Multiple sequence alignment - TraesCS2A01G416400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G416400 chr2A 100.000 4475 0 0 1 4475 672769890 672774364 0.000000e+00 8264.0
1 TraesCS2A01G416400 chr2A 91.444 187 7 4 1995 2172 30978483 30978669 9.610000e-62 248.0
2 TraesCS2A01G416400 chr2A 96.117 103 4 0 1898 2000 681093498 681093396 7.700000e-38 169.0
3 TraesCS2A01G416400 chr2A 100.000 41 0 0 165 205 672770016 672770056 4.800000e-10 76.8
4 TraesCS2A01G416400 chr2A 100.000 41 0 0 127 167 672770054 672770094 4.800000e-10 76.8
5 TraesCS2A01G416400 chr2D 90.683 1771 101 34 165 1899 527903676 527905418 0.000000e+00 2298.0
6 TraesCS2A01G416400 chr2D 94.113 1342 56 10 2243 3569 527905640 527906973 0.000000e+00 2019.0
7 TraesCS2A01G416400 chr2D 92.129 559 35 4 2243 2801 567941692 567942241 0.000000e+00 780.0
8 TraesCS2A01G416400 chr2D 93.571 420 13 4 3570 3989 527907094 527907499 8.230000e-172 614.0
9 TraesCS2A01G416400 chr2D 89.600 500 17 13 3990 4475 527907528 527908006 1.780000e-168 603.0
10 TraesCS2A01G416400 chr2D 93.040 273 12 5 1993 2260 527905417 527905687 4.200000e-105 392.0
11 TraesCS2A01G416400 chr2D 89.818 275 16 7 1995 2260 567941464 567941735 4.290000e-90 342.0
12 TraesCS2A01G416400 chr2D 94.643 112 5 1 1893 2003 593274237 593274348 5.950000e-39 172.0
13 TraesCS2A01G416400 chr2D 93.069 101 7 0 1 101 571773901 571773801 1.000000e-31 148.0
14 TraesCS2A01G416400 chr2D 95.714 70 3 0 98 167 527903647 527903716 3.660000e-21 113.0
15 TraesCS2A01G416400 chr2D 97.674 43 1 0 3596 3638 561053074 561053032 1.730000e-09 75.0
16 TraesCS2A01G416400 chr2D 97.561 41 1 0 3595 3635 327966851 327966811 2.230000e-08 71.3
17 TraesCS2A01G416400 chr2D 96.970 33 0 1 2774 2805 614896064 614896096 2.000000e-03 54.7
18 TraesCS2A01G416400 chr2B 91.718 1630 98 20 294 1899 625541342 625542958 0.000000e+00 2228.0
19 TraesCS2A01G416400 chr2B 90.112 1426 90 19 2158 3569 625543152 625544540 0.000000e+00 1805.0
20 TraesCS2A01G416400 chr2B 86.512 860 52 27 3644 4475 625544724 625545547 0.000000e+00 887.0
21 TraesCS2A01G416400 chr2B 94.444 180 7 2 1993 2170 625542957 625543135 1.590000e-69 274.0
22 TraesCS2A01G416400 chr2B 98.980 98 1 0 1897 1994 462945967 462945870 4.600000e-40 176.0
23 TraesCS2A01G416400 chr2B 97.059 102 3 0 1896 1997 440223765 440223866 5.950000e-39 172.0
24 TraesCS2A01G416400 chr2B 91.304 46 4 0 3590 3635 201234252 201234297 3.740000e-06 63.9
25 TraesCS2A01G416400 chr6B 88.484 1042 85 13 864 1896 70511700 70512715 0.000000e+00 1227.0
26 TraesCS2A01G416400 chr6B 80.615 423 74 6 1088 1504 506271148 506270728 2.010000e-83 320.0
27 TraesCS2A01G416400 chr6B 96.078 102 4 0 1896 1997 480707094 480706993 2.770000e-37 167.0
28 TraesCS2A01G416400 chr5D 92.819 557 31 4 2243 2799 263474101 263474648 0.000000e+00 798.0
29 TraesCS2A01G416400 chr5D 89.818 275 16 7 1995 2260 263473873 263474144 4.290000e-90 342.0
30 TraesCS2A01G416400 chr5D 95.238 42 2 0 3597 3638 120889970 120889929 2.890000e-07 67.6
31 TraesCS2A01G416400 chr7D 92.129 559 35 4 2243 2801 114197007 114197556 0.000000e+00 780.0
32 TraesCS2A01G416400 chr7D 89.455 275 17 7 1995 2260 114196779 114197050 1.990000e-88 337.0
33 TraesCS2A01G416400 chr7D 91.919 99 8 0 1 99 426819537 426819635 6.040000e-29 139.0
34 TraesCS2A01G416400 chr6D 92.129 559 35 4 2243 2801 427839952 427839403 0.000000e+00 780.0
35 TraesCS2A01G416400 chr6D 91.771 559 37 4 2243 2801 10212363 10211814 0.000000e+00 769.0
36 TraesCS2A01G416400 chr6D 89.455 275 17 7 1995 2260 10212591 10212320 1.990000e-88 337.0
37 TraesCS2A01G416400 chr6D 79.240 342 54 15 1164 1504 294414693 294414368 5.830000e-54 222.0
38 TraesCS2A01G416400 chr7A 93.233 266 14 1 2243 2508 190648228 190648489 5.430000e-104 388.0
39 TraesCS2A01G416400 chr7A 97.500 40 1 0 3599 3638 48055539 48055500 8.030000e-08 69.4
40 TraesCS2A01G416400 chr4D 93.462 260 15 1 2243 2502 505743944 505743687 7.020000e-103 385.0
41 TraesCS2A01G416400 chr4D 90.545 275 15 7 1995 2260 505744172 505743900 1.980000e-93 353.0
42 TraesCS2A01G416400 chr4D 92.079 101 8 0 1 101 449403633 449403533 4.670000e-30 143.0
43 TraesCS2A01G416400 chr5A 88.021 192 7 6 1995 2179 539439220 539439402 3.510000e-51 213.0
44 TraesCS2A01G416400 chr1A 94.643 112 5 1 1893 2004 523364526 523364416 5.950000e-39 172.0
45 TraesCS2A01G416400 chr1A 93.750 112 6 1 1893 2004 524707222 524707332 2.770000e-37 167.0
46 TraesCS2A01G416400 chr7B 97.959 98 2 0 1897 1994 217312360 217312263 2.140000e-38 171.0
47 TraesCS2A01G416400 chr3A 96.040 101 3 1 1895 1994 572598442 572598542 3.580000e-36 163.0
48 TraesCS2A01G416400 chr3A 91.837 98 8 0 1 98 657334073 657333976 2.170000e-28 137.0
49 TraesCS2A01G416400 chr3A 97.619 42 1 0 3594 3635 430526513 430526472 6.210000e-09 73.1
50 TraesCS2A01G416400 chr1D 93.000 100 7 0 1 100 400031981 400031882 3.610000e-31 147.0
51 TraesCS2A01G416400 chr1D 91.089 101 9 0 1 101 426441437 426441537 2.170000e-28 137.0
52 TraesCS2A01G416400 chr1D 96.970 33 0 1 2774 2805 424334320 424334352 2.000000e-03 54.7
53 TraesCS2A01G416400 chr3D 92.000 100 8 0 2 101 63783389 63783488 1.680000e-29 141.0
54 TraesCS2A01G416400 chr3B 91.176 102 9 0 1 102 567800736 567800635 6.040000e-29 139.0
55 TraesCS2A01G416400 chr5B 91.089 101 9 0 1 101 282649163 282649263 2.170000e-28 137.0
56 TraesCS2A01G416400 chr5B 93.182 44 3 0 3595 3638 135750740 135750697 1.040000e-06 65.8
57 TraesCS2A01G416400 chr5B 93.023 43 3 0 3593 3635 12334865 12334907 3.740000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G416400 chr2A 672769890 672774364 4474 False 8264.0 8264 100.000000 1 4475 1 chr2A.!!$F2 4474
1 TraesCS2A01G416400 chr2D 527903647 527908006 4359 False 1006.5 2298 92.786833 98 4475 6 chr2D.!!$F3 4377
2 TraesCS2A01G416400 chr2D 567941464 567942241 777 False 561.0 780 90.973500 1995 2801 2 chr2D.!!$F4 806
3 TraesCS2A01G416400 chr2B 625541342 625545547 4205 False 1298.5 2228 90.696500 294 4475 4 chr2B.!!$F3 4181
4 TraesCS2A01G416400 chr6B 70511700 70512715 1015 False 1227.0 1227 88.484000 864 1896 1 chr6B.!!$F1 1032
5 TraesCS2A01G416400 chr5D 263473873 263474648 775 False 570.0 798 91.318500 1995 2799 2 chr5D.!!$F1 804
6 TraesCS2A01G416400 chr7D 114196779 114197556 777 False 558.5 780 90.792000 1995 2801 2 chr7D.!!$F2 806
7 TraesCS2A01G416400 chr6D 427839403 427839952 549 True 780.0 780 92.129000 2243 2801 1 chr6D.!!$R2 558
8 TraesCS2A01G416400 chr6D 10211814 10212591 777 True 553.0 769 90.613000 1995 2801 2 chr6D.!!$R3 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.042188 CGCACAGTGAAACCTCAACG 60.042 55.000 4.15 0.0 37.80 4.10 F
238 239 0.180406 ACAGTGAAACCTCAACGGCT 59.820 50.000 0.00 0.0 37.80 5.52 F
1903 1957 0.105039 CGGGACAGCTCAATACTCCC 59.895 60.000 0.00 0.0 37.77 4.30 F
1907 1961 1.067821 GACAGCTCAATACTCCCTCCG 59.932 57.143 0.00 0.0 0.00 4.63 F
2877 2997 1.073763 TGCACTACCTGACATTTGCCT 59.926 47.619 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1543 1594 0.597377 GTTGAAAGCAAAGCGGTGGG 60.597 55.000 0.00 0.0 35.42 4.61 R
1978 2032 1.076677 TCAACTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.0 0.00 3.36 R
3329 3449 0.252479 CTTGCTCTGCTGGATCAGGT 59.748 55.000 0.00 0.0 34.91 4.00 R
3330 3450 0.540454 TCTTGCTCTGCTGGATCAGG 59.460 55.000 0.00 0.0 34.91 3.86 R
4306 4593 1.298713 CGGAGTCAAGATCGCGGAG 60.299 63.158 6.13 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.322689 TTTATCCGTTTGGGGCCG 57.677 55.556 0.00 0.00 36.01 6.13
18 19 2.047443 TTTATCCGTTTGGGGCCGC 61.047 57.895 14.01 14.01 36.01 6.53
19 20 4.841861 TATCCGTTTGGGGCCGCG 62.842 66.667 15.95 0.00 36.01 6.46
36 37 3.595758 GCATTGGGCCGCGCTATT 61.596 61.111 5.56 0.00 36.11 1.73
37 38 2.639286 CATTGGGCCGCGCTATTC 59.361 61.111 5.56 0.00 0.00 1.75
38 39 2.972505 ATTGGGCCGCGCTATTCG 60.973 61.111 5.56 0.00 42.12 3.34
39 40 3.750373 ATTGGGCCGCGCTATTCGT 62.750 57.895 5.56 0.00 41.07 3.85
40 41 4.884257 TGGGCCGCGCTATTCGTC 62.884 66.667 5.56 0.00 41.07 4.20
44 45 2.581409 CCGCGCTATTCGTCCGTT 60.581 61.111 5.56 0.00 41.07 4.44
45 46 2.574222 CCGCGCTATTCGTCCGTTC 61.574 63.158 5.56 0.00 41.07 3.95
46 47 1.585521 CGCGCTATTCGTCCGTTCT 60.586 57.895 5.56 0.00 41.07 3.01
47 48 0.316442 CGCGCTATTCGTCCGTTCTA 60.316 55.000 5.56 0.00 41.07 2.10
48 49 1.118833 GCGCTATTCGTCCGTTCTAC 58.881 55.000 0.00 0.00 41.07 2.59
49 50 1.751552 CGCTATTCGTCCGTTCTACC 58.248 55.000 0.00 0.00 0.00 3.18
50 51 1.598924 CGCTATTCGTCCGTTCTACCC 60.599 57.143 0.00 0.00 0.00 3.69
51 52 1.269465 GCTATTCGTCCGTTCTACCCC 60.269 57.143 0.00 0.00 0.00 4.95
52 53 2.026641 CTATTCGTCCGTTCTACCCCA 58.973 52.381 0.00 0.00 0.00 4.96
53 54 1.269012 ATTCGTCCGTTCTACCCCAA 58.731 50.000 0.00 0.00 0.00 4.12
54 55 1.047002 TTCGTCCGTTCTACCCCAAA 58.953 50.000 0.00 0.00 0.00 3.28
55 56 0.318120 TCGTCCGTTCTACCCCAAAC 59.682 55.000 0.00 0.00 0.00 2.93
56 57 1.010419 CGTCCGTTCTACCCCAAACG 61.010 60.000 0.93 0.93 45.83 3.60
59 60 2.831597 CGTTCTACCCCAAACGGAC 58.168 57.895 0.00 0.00 43.31 4.79
60 61 1.010419 CGTTCTACCCCAAACGGACG 61.010 60.000 0.00 0.00 43.31 4.79
61 62 1.004679 TTCTACCCCAAACGGACGC 60.005 57.895 0.00 0.00 0.00 5.19
62 63 1.756408 TTCTACCCCAAACGGACGCA 61.756 55.000 0.00 0.00 0.00 5.24
63 64 1.078708 CTACCCCAAACGGACGCAT 60.079 57.895 0.00 0.00 0.00 4.73
64 65 1.078988 TACCCCAAACGGACGCATC 60.079 57.895 0.00 0.00 0.00 3.91
65 66 2.524951 TACCCCAAACGGACGCATCC 62.525 60.000 0.00 0.00 42.28 3.51
73 74 4.590487 GGACGCATCCGAACAAGA 57.410 55.556 0.00 0.00 34.48 3.02
74 75 3.065575 GGACGCATCCGAACAAGAT 57.934 52.632 0.00 0.00 34.48 2.40
75 76 0.652592 GGACGCATCCGAACAAGATG 59.347 55.000 0.00 0.00 43.31 2.90
76 77 0.652592 GACGCATCCGAACAAGATGG 59.347 55.000 3.19 0.00 41.22 3.51
77 78 2.016961 CGCATCCGAACAAGATGGG 58.983 57.895 3.82 3.82 44.82 4.00
78 79 1.439353 CGCATCCGAACAAGATGGGG 61.439 60.000 9.28 0.00 45.80 4.96
79 80 0.394352 GCATCCGAACAAGATGGGGT 60.394 55.000 3.19 0.00 41.22 4.95
80 81 1.668419 CATCCGAACAAGATGGGGTC 58.332 55.000 0.00 0.00 37.96 4.46
81 82 0.178068 ATCCGAACAAGATGGGGTCG 59.822 55.000 0.00 0.00 0.00 4.79
82 83 2.106683 CCGAACAAGATGGGGTCGC 61.107 63.158 0.00 0.00 0.00 5.19
83 84 1.375396 CGAACAAGATGGGGTCGCA 60.375 57.895 0.00 0.00 0.00 5.10
84 85 1.635663 CGAACAAGATGGGGTCGCAC 61.636 60.000 0.00 0.00 0.00 5.34
85 86 0.605319 GAACAAGATGGGGTCGCACA 60.605 55.000 0.00 0.00 0.00 4.57
86 87 0.606401 AACAAGATGGGGTCGCACAG 60.606 55.000 0.00 0.00 0.00 3.66
87 88 1.003355 CAAGATGGGGTCGCACAGT 60.003 57.895 0.00 0.00 0.00 3.55
88 89 1.003355 AAGATGGGGTCGCACAGTG 60.003 57.895 0.00 0.00 0.00 3.66
89 90 2.436646 GATGGGGTCGCACAGTGG 60.437 66.667 1.84 0.00 0.00 4.00
90 91 2.927856 ATGGGGTCGCACAGTGGA 60.928 61.111 1.84 0.00 0.00 4.02
91 92 2.859273 GATGGGGTCGCACAGTGGAG 62.859 65.000 1.84 0.00 0.00 3.86
92 93 3.626924 GGGGTCGCACAGTGGAGT 61.627 66.667 1.84 0.00 0.00 3.85
93 94 2.426023 GGGTCGCACAGTGGAGTT 59.574 61.111 1.84 0.00 0.00 3.01
94 95 1.961277 GGGTCGCACAGTGGAGTTG 60.961 63.158 1.84 0.00 0.00 3.16
95 96 1.069090 GGTCGCACAGTGGAGTTGA 59.931 57.895 1.84 0.00 0.00 3.18
96 97 1.222115 GGTCGCACAGTGGAGTTGAC 61.222 60.000 1.84 0.22 0.00 3.18
129 130 2.175878 AGCTCAACTGACCACACATC 57.824 50.000 0.00 0.00 0.00 3.06
130 131 1.696336 AGCTCAACTGACCACACATCT 59.304 47.619 0.00 0.00 0.00 2.90
131 132 2.899900 AGCTCAACTGACCACACATCTA 59.100 45.455 0.00 0.00 0.00 1.98
132 133 2.996621 GCTCAACTGACCACACATCTAC 59.003 50.000 0.00 0.00 0.00 2.59
133 134 3.554960 GCTCAACTGACCACACATCTACA 60.555 47.826 0.00 0.00 0.00 2.74
134 135 4.240888 CTCAACTGACCACACATCTACAG 58.759 47.826 0.00 0.00 0.00 2.74
135 136 3.006859 TCAACTGACCACACATCTACAGG 59.993 47.826 0.00 0.00 0.00 4.00
136 137 1.902508 ACTGACCACACATCTACAGGG 59.097 52.381 0.00 0.00 0.00 4.45
137 138 1.902508 CTGACCACACATCTACAGGGT 59.097 52.381 0.00 0.00 0.00 4.34
138 139 1.623311 TGACCACACATCTACAGGGTG 59.377 52.381 0.00 0.00 38.47 4.61
139 140 3.861341 CCACACATCTACAGGGTGG 57.139 57.895 0.00 0.00 42.57 4.61
142 143 3.634397 CACACATCTACAGGGTGGATT 57.366 47.619 0.00 0.00 31.53 3.01
143 144 3.535561 CACACATCTACAGGGTGGATTC 58.464 50.000 0.00 0.00 31.53 2.52
144 145 3.055167 CACACATCTACAGGGTGGATTCA 60.055 47.826 0.00 0.00 31.53 2.57
145 146 3.055094 ACACATCTACAGGGTGGATTCAC 60.055 47.826 0.00 0.00 42.91 3.18
156 157 1.559368 TGGATTCACCATTGCCAAGG 58.441 50.000 0.00 0.00 44.64 3.61
157 158 0.826062 GGATTCACCATTGCCAAGGG 59.174 55.000 6.58 6.58 38.79 3.95
159 160 2.622977 GGATTCACCATTGCCAAGGGTA 60.623 50.000 14.20 0.00 45.13 3.69
160 161 2.917713 TTCACCATTGCCAAGGGTAT 57.082 45.000 14.20 0.00 45.13 2.73
161 162 4.469657 GATTCACCATTGCCAAGGGTATA 58.530 43.478 14.20 5.24 45.13 1.47
162 163 4.323569 TTCACCATTGCCAAGGGTATAA 57.676 40.909 14.20 8.64 45.13 0.98
163 164 4.534647 TCACCATTGCCAAGGGTATAAT 57.465 40.909 14.20 0.00 45.13 1.28
164 165 4.469657 TCACCATTGCCAAGGGTATAATC 58.530 43.478 14.20 0.00 45.13 1.75
165 166 4.079500 TCACCATTGCCAAGGGTATAATCA 60.080 41.667 14.20 0.00 45.13 2.57
166 167 4.834496 CACCATTGCCAAGGGTATAATCAT 59.166 41.667 14.20 0.00 45.13 2.45
207 208 3.524095 TGCCAAGGGTATAATCATGGG 57.476 47.619 0.00 0.00 0.00 4.00
208 209 3.059853 TGCCAAGGGTATAATCATGGGA 58.940 45.455 0.00 0.00 0.00 4.37
211 212 5.086621 GCCAAGGGTATAATCATGGGAAAT 58.913 41.667 0.00 0.00 0.00 2.17
216 217 7.839680 AGGGTATAATCATGGGAAATTGTTC 57.160 36.000 0.00 0.00 0.00 3.18
224 225 2.050477 GGGAAATTGTTCGCACAGTG 57.950 50.000 0.00 0.00 44.15 3.66
235 236 0.042188 CGCACAGTGAAACCTCAACG 60.042 55.000 4.15 0.00 37.80 4.10
236 237 0.307760 GCACAGTGAAACCTCAACGG 59.692 55.000 4.15 0.00 37.80 4.44
237 238 0.307760 CACAGTGAAACCTCAACGGC 59.692 55.000 0.00 0.00 37.80 5.68
238 239 0.180406 ACAGTGAAACCTCAACGGCT 59.820 50.000 0.00 0.00 37.80 5.52
239 240 0.868406 CAGTGAAACCTCAACGGCTC 59.132 55.000 0.00 0.00 37.80 4.70
240 241 0.468226 AGTGAAACCTCAACGGCTCA 59.532 50.000 0.00 0.00 37.80 4.26
241 242 1.134220 AGTGAAACCTCAACGGCTCAA 60.134 47.619 0.00 0.00 37.80 3.02
242 243 1.002792 GTGAAACCTCAACGGCTCAAC 60.003 52.381 0.00 0.00 35.61 3.18
243 244 0.234884 GAAACCTCAACGGCTCAACG 59.765 55.000 0.00 0.00 40.31 4.10
256 257 2.403698 GGCTCAACGCAAATGTTTAACG 59.596 45.455 0.00 0.00 41.67 3.18
262 263 6.484540 TCAACGCAAATGTTTAACGTCTAAA 58.515 32.000 0.00 0.00 33.01 1.85
263 264 6.411492 TCAACGCAAATGTTTAACGTCTAAAC 59.589 34.615 18.40 18.40 37.78 2.01
266 267 6.412653 ACGCAAATGTTTAACGTCTAAACTTG 59.587 34.615 22.28 20.10 38.04 3.16
267 268 6.412653 CGCAAATGTTTAACGTCTAAACTTGT 59.587 34.615 22.28 14.55 38.04 3.16
280 281 6.350277 CGTCTAAACTTGTGATCTACTCCCTT 60.350 42.308 0.00 0.00 0.00 3.95
281 282 7.036829 GTCTAAACTTGTGATCTACTCCCTTC 58.963 42.308 0.00 0.00 0.00 3.46
282 283 6.954684 TCTAAACTTGTGATCTACTCCCTTCT 59.045 38.462 0.00 0.00 0.00 2.85
315 316 0.433871 GACGTTTTTCGACGCTCTCC 59.566 55.000 0.00 0.00 46.47 3.71
316 317 1.273455 ACGTTTTTCGACGCTCTCCG 61.273 55.000 0.00 0.00 46.47 4.63
329 331 2.341760 CGCTCTCCGAGACTTAAAAACG 59.658 50.000 0.00 0.00 40.02 3.60
341 343 9.429600 CGAGACTTAAAAACGTCTTGTAAAAAT 57.570 29.630 0.00 0.00 40.37 1.82
361 364 7.534723 AAAATTTAAGACAGGGGGAGTAAAC 57.465 36.000 0.00 0.00 0.00 2.01
377 380 8.635328 GGGGAGTAAACACAAATTTTCTTTCTA 58.365 33.333 0.00 0.00 0.00 2.10
417 421 6.778834 TTTTTACATGCCATCACTCATCAT 57.221 33.333 0.00 0.00 0.00 2.45
418 422 6.778834 TTTTACATGCCATCACTCATCATT 57.221 33.333 0.00 0.00 0.00 2.57
419 423 6.778834 TTTACATGCCATCACTCATCATTT 57.221 33.333 0.00 0.00 0.00 2.32
420 424 4.913335 ACATGCCATCACTCATCATTTC 57.087 40.909 0.00 0.00 0.00 2.17
479 488 0.820871 CCCTACTCTGGCTCAGACAC 59.179 60.000 1.25 0.00 35.39 3.67
484 493 2.046507 CTGGCTCAGACACAGGGC 60.047 66.667 0.00 0.00 32.44 5.19
584 601 0.394352 GGGTCCTATTGCCCACACTG 60.394 60.000 0.00 0.00 44.23 3.66
600 617 2.895404 ACACTGTTCATGGGTACGTACT 59.105 45.455 24.07 2.78 0.00 2.73
601 618 4.081406 ACACTGTTCATGGGTACGTACTA 58.919 43.478 24.07 14.43 0.00 1.82
602 619 4.082571 ACACTGTTCATGGGTACGTACTAC 60.083 45.833 24.07 17.47 0.00 2.73
643 660 2.545526 GCACTTATCATCCACATCCACG 59.454 50.000 0.00 0.00 0.00 4.94
692 714 2.588201 GGGATCCATCGCTCTCCCC 61.588 68.421 15.23 0.00 41.35 4.81
703 725 1.893786 CTCTCCCCCAACACGAGAG 59.106 63.158 0.00 0.00 42.60 3.20
733 755 3.598264 AGCTAGCTTCCACCCCAATATA 58.402 45.455 12.68 0.00 0.00 0.86
734 756 3.328050 AGCTAGCTTCCACCCCAATATAC 59.672 47.826 12.68 0.00 0.00 1.47
735 757 3.072476 GCTAGCTTCCACCCCAATATACA 59.928 47.826 7.70 0.00 0.00 2.29
749 771 5.472137 CCCAATATACACCCAAAGAATACCG 59.528 44.000 0.00 0.00 0.00 4.02
789 831 1.203523 TGTCACACACAACAAAAGGGC 59.796 47.619 0.00 0.00 29.30 5.19
872 914 0.904865 GAAAAGGGGCAGGGAAAGGG 60.905 60.000 0.00 0.00 0.00 3.95
873 915 3.546144 AAAGGGGCAGGGAAAGGGC 62.546 63.158 0.00 0.00 0.00 5.19
882 924 3.403558 GGAAAGGGCGGAGGAGCT 61.404 66.667 0.00 0.00 37.29 4.09
901 943 0.463620 TGCCCAAGCACAAACCTTTC 59.536 50.000 0.00 0.00 46.52 2.62
935 977 3.692370 AACCCTACCAATCCGCCGC 62.692 63.158 0.00 0.00 0.00 6.53
1044 1086 4.148825 CTCTTCGCGGTCCTGGGG 62.149 72.222 6.13 0.00 0.00 4.96
1505 1556 1.081175 GCCGCTTCTTGCAAGGTTC 60.081 57.895 25.73 13.36 43.06 3.62
1528 1579 0.716108 CTTTACTCGCGTTGCTCCAG 59.284 55.000 5.77 0.00 0.00 3.86
1543 1594 1.929836 CTCCAGAGCGTGCAATTACTC 59.070 52.381 0.00 0.00 0.00 2.59
1548 1599 0.676782 AGCGTGCAATTACTCCCACC 60.677 55.000 0.00 0.00 0.00 4.61
1562 1613 0.597377 CCCACCGCTTTGCTTTCAAC 60.597 55.000 0.00 0.00 30.75 3.18
1571 1622 3.063861 GCTTTGCTTTCAACCCAAGTTTG 59.936 43.478 0.00 0.00 32.45 2.93
1639 1690 6.578919 GCTGAAACTGTAGTAAATTTGCTGAC 59.421 38.462 17.88 12.13 0.00 3.51
1641 1692 7.861630 TGAAACTGTAGTAAATTTGCTGACTC 58.138 34.615 17.88 7.18 0.00 3.36
1650 1704 1.241165 TTTGCTGACTCATGTGCCAG 58.759 50.000 6.71 6.71 0.00 4.85
1653 1707 3.170360 CTGACTCATGTGCCAGCAT 57.830 52.632 0.00 0.00 0.00 3.79
1654 1708 1.015109 CTGACTCATGTGCCAGCATC 58.985 55.000 0.00 0.00 0.00 3.91
1655 1709 0.741927 TGACTCATGTGCCAGCATCG 60.742 55.000 0.00 0.00 0.00 3.84
1670 1724 3.428198 CAGCATCGTAATTAGCTCTGCTC 59.572 47.826 0.00 0.00 40.44 4.26
1732 1786 8.830580 TCTCTGTTTGATTTGATCGATTATTCC 58.169 33.333 0.00 0.00 0.00 3.01
1818 1872 3.385755 AGCCTTGCAGAGTGATTTTTGTT 59.614 39.130 0.00 0.00 0.00 2.83
1819 1873 4.584325 AGCCTTGCAGAGTGATTTTTGTTA 59.416 37.500 0.00 0.00 0.00 2.41
1820 1874 4.681483 GCCTTGCAGAGTGATTTTTGTTAC 59.319 41.667 0.00 0.00 0.00 2.50
1883 1937 7.709613 ACTTTTGTCGTGAAGTTTACTAGACAT 59.290 33.333 8.59 0.00 37.07 3.06
1897 1951 1.198713 AGACATCGGGACAGCTCAAT 58.801 50.000 0.00 0.00 0.00 2.57
1898 1952 2.388735 AGACATCGGGACAGCTCAATA 58.611 47.619 0.00 0.00 0.00 1.90
1899 1953 2.101582 AGACATCGGGACAGCTCAATAC 59.898 50.000 0.00 0.00 0.00 1.89
1900 1954 2.101582 GACATCGGGACAGCTCAATACT 59.898 50.000 0.00 0.00 0.00 2.12
1901 1955 2.101582 ACATCGGGACAGCTCAATACTC 59.898 50.000 0.00 0.00 0.00 2.59
1902 1956 1.112113 TCGGGACAGCTCAATACTCC 58.888 55.000 0.00 0.00 0.00 3.85
1903 1957 0.105039 CGGGACAGCTCAATACTCCC 59.895 60.000 0.00 0.00 37.77 4.30
1904 1958 1.501582 GGGACAGCTCAATACTCCCT 58.498 55.000 0.00 0.00 38.07 4.20
1905 1959 1.414550 GGGACAGCTCAATACTCCCTC 59.585 57.143 0.00 0.00 38.07 4.30
1906 1960 1.414550 GGACAGCTCAATACTCCCTCC 59.585 57.143 0.00 0.00 0.00 4.30
1907 1961 1.067821 GACAGCTCAATACTCCCTCCG 59.932 57.143 0.00 0.00 0.00 4.63
1908 1962 1.115467 CAGCTCAATACTCCCTCCGT 58.885 55.000 0.00 0.00 0.00 4.69
1909 1963 1.482593 CAGCTCAATACTCCCTCCGTT 59.517 52.381 0.00 0.00 0.00 4.44
1910 1964 1.757699 AGCTCAATACTCCCTCCGTTC 59.242 52.381 0.00 0.00 0.00 3.95
1911 1965 1.202545 GCTCAATACTCCCTCCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
1912 1966 2.108168 CTCAATACTCCCTCCGTTCCA 58.892 52.381 0.00 0.00 0.00 3.53
1913 1967 2.500098 CTCAATACTCCCTCCGTTCCAA 59.500 50.000 0.00 0.00 0.00 3.53
1914 1968 2.907696 TCAATACTCCCTCCGTTCCAAA 59.092 45.455 0.00 0.00 0.00 3.28
1915 1969 3.328343 TCAATACTCCCTCCGTTCCAAAA 59.672 43.478 0.00 0.00 0.00 2.44
1916 1970 4.018779 TCAATACTCCCTCCGTTCCAAAAT 60.019 41.667 0.00 0.00 0.00 1.82
1917 1971 5.190132 TCAATACTCCCTCCGTTCCAAAATA 59.810 40.000 0.00 0.00 0.00 1.40
1918 1972 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1919 1973 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1920 1974 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1921 1975 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1922 1976 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1923 1977 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1924 1978 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1925 1979 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1926 1980 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1927 1981 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1928 1982 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
1929 1983 6.884295 TCCGTTCCAAAATAGATGACTCAATT 59.116 34.615 0.00 0.00 0.00 2.32
1930 1984 7.393234 TCCGTTCCAAAATAGATGACTCAATTT 59.607 33.333 0.00 0.00 0.00 1.82
1931 1985 8.028938 CCGTTCCAAAATAGATGACTCAATTTT 58.971 33.333 0.00 0.00 33.07 1.82
1969 2023 9.716531 AGTACAAAGTTAGTATAAAGTTGGGTC 57.283 33.333 0.00 0.00 0.00 4.46
1970 2024 9.492973 GTACAAAGTTAGTATAAAGTTGGGTCA 57.507 33.333 0.00 0.00 0.00 4.02
1972 2026 9.227777 ACAAAGTTAGTATAAAGTTGGGTCATC 57.772 33.333 0.00 0.00 0.00 2.92
1973 2027 9.449719 CAAAGTTAGTATAAAGTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
1983 2037 7.939784 AAAGTTGGGTCATCTATTTAGGAAC 57.060 36.000 0.00 0.00 0.00 3.62
1984 2038 5.671493 AGTTGGGTCATCTATTTAGGAACG 58.329 41.667 0.00 0.00 0.00 3.95
1985 2039 4.682778 TGGGTCATCTATTTAGGAACGG 57.317 45.455 0.00 0.00 0.00 4.44
1986 2040 4.291792 TGGGTCATCTATTTAGGAACGGA 58.708 43.478 0.00 0.00 0.00 4.69
1987 2041 4.344102 TGGGTCATCTATTTAGGAACGGAG 59.656 45.833 0.00 0.00 0.00 4.63
1988 2042 4.262506 GGGTCATCTATTTAGGAACGGAGG 60.263 50.000 0.00 0.00 0.00 4.30
1989 2043 4.262506 GGTCATCTATTTAGGAACGGAGGG 60.263 50.000 0.00 0.00 0.00 4.30
1990 2044 4.587684 GTCATCTATTTAGGAACGGAGGGA 59.412 45.833 0.00 0.00 0.00 4.20
1991 2045 4.833380 TCATCTATTTAGGAACGGAGGGAG 59.167 45.833 0.00 0.00 0.00 4.30
2124 2187 6.024552 TGTAGCAACCTCATTTGATTTTCC 57.975 37.500 0.00 0.00 0.00 3.13
2156 2221 9.760660 GATCTGTGTTGTTCAGTTATATCAAAC 57.239 33.333 0.00 0.00 34.86 2.93
2234 2328 9.836864 ATTATTAAATGGAAATGCTTTCTTCCC 57.163 29.630 8.05 0.00 40.45 3.97
2235 2329 6.933514 TTAAATGGAAATGCTTTCTTCCCT 57.066 33.333 8.05 0.00 40.45 4.20
2236 2330 4.813750 AATGGAAATGCTTTCTTCCCTG 57.186 40.909 8.05 0.00 40.45 4.45
2237 2331 3.524095 TGGAAATGCTTTCTTCCCTGA 57.476 42.857 8.05 0.00 40.45 3.86
2238 2332 3.843422 TGGAAATGCTTTCTTCCCTGAA 58.157 40.909 8.05 0.00 40.45 3.02
2239 2333 4.222336 TGGAAATGCTTTCTTCCCTGAAA 58.778 39.130 8.05 0.00 40.45 2.69
2240 2334 4.653341 TGGAAATGCTTTCTTCCCTGAAAA 59.347 37.500 8.05 0.00 40.45 2.29
2241 2335 5.130145 TGGAAATGCTTTCTTCCCTGAAAAA 59.870 36.000 8.05 0.00 40.45 1.94
2311 2423 9.890629 TCTTATATGAAGTGTTTGCAAGACTAT 57.109 29.630 12.24 7.19 33.33 2.12
2325 2437 6.798482 TGCAAGACTATCTTTATGGCATTTG 58.202 36.000 4.78 0.84 33.78 2.32
2384 2496 5.333513 CATCTTTCAGCTCTCATTTTCAGC 58.666 41.667 0.00 0.00 0.00 4.26
2389 2501 1.552337 AGCTCTCATTTTCAGCGGAGA 59.448 47.619 0.00 0.00 38.26 3.71
2514 2626 9.495572 AAAACAATTTCTGTGGTTTTTGACTTA 57.504 25.926 0.00 0.00 39.63 2.24
2575 2691 3.888930 GAGGGTTTGAAAAGGACATGTCA 59.111 43.478 26.47 3.25 0.00 3.58
2614 2730 7.246311 TGCTACTACTACATTTCTTGTACGAC 58.754 38.462 0.00 0.00 39.87 4.34
2697 2813 9.668497 TCTATTACATCTATATCGTACTGCACT 57.332 33.333 0.00 0.00 0.00 4.40
2703 2819 8.793592 ACATCTATATCGTACTGCACTATTGAA 58.206 33.333 0.00 0.00 0.00 2.69
2725 2841 4.497473 TTGAAAATGTGTCGGCCTTTAG 57.503 40.909 0.00 0.00 0.00 1.85
2815 2931 5.826601 TGCTAGTTACTGTCAGATCTCAG 57.173 43.478 6.91 9.34 37.65 3.35
2825 2941 7.218228 ACTGTCAGATCTCAGATCATGATAC 57.782 40.000 17.27 7.49 37.28 2.24
2874 2994 3.930336 TCTCTGCACTACCTGACATTTG 58.070 45.455 0.00 0.00 0.00 2.32
2877 2997 1.073763 TGCACTACCTGACATTTGCCT 59.926 47.619 0.00 0.00 0.00 4.75
2878 2998 2.162681 GCACTACCTGACATTTGCCTT 58.837 47.619 0.00 0.00 0.00 4.35
2901 3021 5.993748 TTTAAATTTTACCTGCAGAGGGG 57.006 39.130 17.39 0.66 44.84 4.79
2946 3066 6.179040 GGAGATAATCTGCAAGCTATCCATT 58.821 40.000 0.00 0.00 34.73 3.16
3057 3177 1.750399 CGATTTCCAGCCCAGGGTG 60.750 63.158 7.55 8.95 42.60 4.61
3060 3180 2.484287 ATTTCCAGCCCAGGGTGTCG 62.484 60.000 14.43 0.87 41.52 4.35
3093 3213 4.785453 CTCCTGCTGAACCCCGCC 62.785 72.222 0.00 0.00 0.00 6.13
3354 3474 0.037882 TCCAGCAGAGCAAGAACTCG 60.038 55.000 0.00 0.00 41.77 4.18
3435 3555 0.179108 CGTCCTTGAGACCGGATTCC 60.179 60.000 9.46 0.00 43.08 3.01
3437 3557 1.134670 GTCCTTGAGACCGGATTCCAG 60.135 57.143 9.46 6.27 39.84 3.86
3441 3561 1.227002 GAGACCGGATTCCAGACGC 60.227 63.158 9.46 0.00 0.00 5.19
3468 3588 2.214376 AGAGGCTGGAGGAGATATCG 57.786 55.000 0.00 0.00 0.00 2.92
3488 3608 4.364409 GTGACCGAAACACGCCGC 62.364 66.667 0.00 0.00 41.07 6.53
3540 3670 0.833287 ATACCAGCAGCAGGGTAGTG 59.167 55.000 17.90 0.00 42.55 2.74
3541 3671 0.544357 TACCAGCAGCAGGGTAGTGT 60.544 55.000 8.98 0.00 38.60 3.55
3542 3672 1.376466 CCAGCAGCAGGGTAGTGTT 59.624 57.895 0.00 0.00 0.00 3.32
3543 3673 0.957395 CCAGCAGCAGGGTAGTGTTG 60.957 60.000 0.00 0.00 0.00 3.33
3583 3836 0.108138 ACCCGCTGACTGTATTCTGC 60.108 55.000 0.00 0.00 37.16 4.26
3591 3844 2.164422 TGACTGTATTCTGCAGACCTCG 59.836 50.000 18.03 6.78 37.40 4.63
3606 3859 3.574826 AGACCTCGCCTGAATTATACTCC 59.425 47.826 0.00 0.00 0.00 3.85
3673 3926 6.603201 TGTATGGATCCTTCATCTTTTGAACC 59.397 38.462 14.23 0.00 39.44 3.62
3695 3948 1.358759 GGAGGTGGTTGTTTGCACG 59.641 57.895 0.00 0.00 0.00 5.34
3696 3949 1.299089 GAGGTGGTTGTTTGCACGC 60.299 57.895 0.00 0.00 0.00 5.34
3697 3950 1.999071 GAGGTGGTTGTTTGCACGCA 61.999 55.000 0.00 0.00 0.00 5.24
3698 3951 1.876263 GGTGGTTGTTTGCACGCAC 60.876 57.895 0.00 0.00 0.00 5.34
3705 3958 1.100463 TGTTTGCACGCACTGGTCAT 61.100 50.000 0.00 0.00 0.00 3.06
3741 3994 2.754552 TCCTGGCTGTTGTTTGATATGC 59.245 45.455 0.00 0.00 0.00 3.14
3747 4000 3.782250 GCTGTTGTTTGATATGCGACTCG 60.782 47.826 0.00 0.00 0.00 4.18
3748 4001 3.322369 TGTTGTTTGATATGCGACTCGT 58.678 40.909 0.00 0.00 0.00 4.18
3966 4223 1.700186 GAATCTACCCTCCCATGTCCC 59.300 57.143 0.00 0.00 0.00 4.46
3967 4224 0.647738 ATCTACCCTCCCATGTCCCA 59.352 55.000 0.00 0.00 0.00 4.37
4046 4333 2.948315 GTTTTGCAATTTTGGCCCAGAA 59.052 40.909 0.00 0.00 0.00 3.02
4054 4341 0.401738 TTTGGCCCAGAAGAGAGTGG 59.598 55.000 0.00 0.00 0.00 4.00
4101 4388 9.150348 AGAGTTGGTAAGTTTTGATTTGTTTTG 57.850 29.630 0.00 0.00 0.00 2.44
4121 4408 0.252197 ACACCGGCTACAGAAATCCC 59.748 55.000 0.00 0.00 0.00 3.85
4195 4482 1.221840 GAAGAGATCAGGCGGCCAA 59.778 57.895 23.09 9.36 0.00 4.52
4197 4484 2.514824 GAGATCAGGCGGCCAACC 60.515 66.667 23.09 2.94 0.00 3.77
4198 4485 3.329542 GAGATCAGGCGGCCAACCA 62.330 63.158 23.09 1.39 34.57 3.67
4199 4486 2.124151 GATCAGGCGGCCAACCAT 60.124 61.111 23.09 6.76 34.57 3.55
4200 4487 2.440796 ATCAGGCGGCCAACCATG 60.441 61.111 23.09 10.43 34.57 3.66
4201 4488 3.286694 ATCAGGCGGCCAACCATGT 62.287 57.895 23.09 0.00 34.57 3.21
4248 4535 3.011144 TCTGATGGGAAAATGCCACCTTA 59.989 43.478 0.00 0.00 41.95 2.69
4306 4593 4.211374 CGTATAGCTGGCTGGATAAACAAC 59.789 45.833 5.25 0.00 0.00 3.32
4331 4618 0.532573 GATCTTGACTCCGCCACAGA 59.467 55.000 0.00 0.00 0.00 3.41
4332 4619 0.976641 ATCTTGACTCCGCCACAGAA 59.023 50.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.047443 GCGGCCCCAAACGGATAAA 61.047 57.895 0.00 0.00 0.00 1.40
1 2 2.438795 GCGGCCCCAAACGGATAA 60.439 61.111 0.00 0.00 0.00 1.75
2 3 4.841861 CGCGGCCCCAAACGGATA 62.842 66.667 0.00 0.00 0.00 2.59
19 20 3.542629 GAATAGCGCGGCCCAATGC 62.543 63.158 8.83 0.00 40.16 3.56
20 21 2.639286 GAATAGCGCGGCCCAATG 59.361 61.111 8.83 0.00 0.00 2.82
21 22 2.972505 CGAATAGCGCGGCCCAAT 60.973 61.111 8.83 0.00 0.00 3.16
22 23 4.460683 ACGAATAGCGCGGCCCAA 62.461 61.111 8.83 0.00 46.04 4.12
23 24 4.884257 GACGAATAGCGCGGCCCA 62.884 66.667 8.83 0.00 46.04 5.36
27 28 2.574222 GAACGGACGAATAGCGCGG 61.574 63.158 8.83 0.00 46.04 6.46
28 29 0.316442 TAGAACGGACGAATAGCGCG 60.316 55.000 0.00 0.00 46.04 6.86
29 30 1.118833 GTAGAACGGACGAATAGCGC 58.881 55.000 0.00 0.00 46.04 5.92
31 32 1.269465 GGGGTAGAACGGACGAATAGC 60.269 57.143 0.00 0.00 0.00 2.97
32 33 2.026641 TGGGGTAGAACGGACGAATAG 58.973 52.381 0.00 0.00 0.00 1.73
33 34 2.142356 TGGGGTAGAACGGACGAATA 57.858 50.000 0.00 0.00 0.00 1.75
34 35 1.269012 TTGGGGTAGAACGGACGAAT 58.731 50.000 0.00 0.00 0.00 3.34
35 36 1.047002 TTTGGGGTAGAACGGACGAA 58.953 50.000 0.00 0.00 0.00 3.85
36 37 0.318120 GTTTGGGGTAGAACGGACGA 59.682 55.000 0.00 0.00 0.00 4.20
37 38 1.010419 CGTTTGGGGTAGAACGGACG 61.010 60.000 1.06 0.00 43.44 4.79
38 39 2.831597 CGTTTGGGGTAGAACGGAC 58.168 57.895 1.06 0.00 43.44 4.79
41 42 1.010419 CGTCCGTTTGGGGTAGAACG 61.010 60.000 1.98 1.98 45.89 3.95
42 43 1.293963 GCGTCCGTTTGGGGTAGAAC 61.294 60.000 0.00 0.00 36.01 3.01
43 44 1.004679 GCGTCCGTTTGGGGTAGAA 60.005 57.895 0.00 0.00 36.01 2.10
44 45 1.546589 ATGCGTCCGTTTGGGGTAGA 61.547 55.000 0.00 0.00 36.01 2.59
45 46 1.078708 ATGCGTCCGTTTGGGGTAG 60.079 57.895 0.00 0.00 36.01 3.18
46 47 1.078988 GATGCGTCCGTTTGGGGTA 60.079 57.895 0.00 0.00 36.01 3.69
47 48 2.359478 GATGCGTCCGTTTGGGGT 60.359 61.111 0.00 0.00 36.01 4.95
48 49 3.131478 GGATGCGTCCGTTTGGGG 61.131 66.667 9.75 0.00 34.13 4.96
56 57 0.652592 CATCTTGTTCGGATGCGTCC 59.347 55.000 15.54 15.54 41.40 4.79
57 58 0.652592 CCATCTTGTTCGGATGCGTC 59.347 55.000 6.49 0.00 39.19 5.19
58 59 0.744414 CCCATCTTGTTCGGATGCGT 60.744 55.000 6.49 0.00 39.19 5.24
59 60 1.439353 CCCCATCTTGTTCGGATGCG 61.439 60.000 0.00 0.00 39.19 4.73
60 61 0.394352 ACCCCATCTTGTTCGGATGC 60.394 55.000 0.00 0.00 39.19 3.91
61 62 1.668419 GACCCCATCTTGTTCGGATG 58.332 55.000 0.00 0.00 39.94 3.51
62 63 0.178068 CGACCCCATCTTGTTCGGAT 59.822 55.000 0.00 0.00 0.00 4.18
63 64 1.594833 CGACCCCATCTTGTTCGGA 59.405 57.895 0.00 0.00 0.00 4.55
64 65 2.106683 GCGACCCCATCTTGTTCGG 61.107 63.158 0.00 0.00 0.00 4.30
65 66 1.375396 TGCGACCCCATCTTGTTCG 60.375 57.895 0.00 0.00 0.00 3.95
66 67 0.605319 TGTGCGACCCCATCTTGTTC 60.605 55.000 0.00 0.00 0.00 3.18
67 68 0.606401 CTGTGCGACCCCATCTTGTT 60.606 55.000 0.00 0.00 0.00 2.83
68 69 1.003355 CTGTGCGACCCCATCTTGT 60.003 57.895 0.00 0.00 0.00 3.16
69 70 1.003355 ACTGTGCGACCCCATCTTG 60.003 57.895 0.00 0.00 0.00 3.02
70 71 1.003355 CACTGTGCGACCCCATCTT 60.003 57.895 0.00 0.00 0.00 2.40
71 72 2.665000 CACTGTGCGACCCCATCT 59.335 61.111 0.00 0.00 0.00 2.90
72 73 2.436646 CCACTGTGCGACCCCATC 60.437 66.667 1.29 0.00 0.00 3.51
73 74 2.927856 TCCACTGTGCGACCCCAT 60.928 61.111 1.29 0.00 0.00 4.00
74 75 3.625897 CTCCACTGTGCGACCCCA 61.626 66.667 1.29 0.00 0.00 4.96
75 76 3.178540 AACTCCACTGTGCGACCCC 62.179 63.158 1.29 0.00 0.00 4.95
76 77 1.961277 CAACTCCACTGTGCGACCC 60.961 63.158 1.29 0.00 0.00 4.46
77 78 1.069090 TCAACTCCACTGTGCGACC 59.931 57.895 1.29 0.00 0.00 4.79
78 79 1.222115 GGTCAACTCCACTGTGCGAC 61.222 60.000 1.29 3.59 0.00 5.19
79 80 1.069090 GGTCAACTCCACTGTGCGA 59.931 57.895 1.29 0.69 0.00 5.10
80 81 0.317160 TAGGTCAACTCCACTGTGCG 59.683 55.000 1.29 0.00 0.00 5.34
81 82 2.543777 TTAGGTCAACTCCACTGTGC 57.456 50.000 1.29 0.00 0.00 4.57
82 83 3.815401 CCTTTTAGGTCAACTCCACTGTG 59.185 47.826 0.00 0.00 0.00 3.66
83 84 4.086706 CCTTTTAGGTCAACTCCACTGT 57.913 45.455 0.00 0.00 0.00 3.55
96 97 4.938226 CAGTTGAGCTAGGAACCTTTTAGG 59.062 45.833 0.00 0.00 42.49 2.69
109 110 2.899900 AGATGTGTGGTCAGTTGAGCTA 59.100 45.455 12.02 0.00 42.60 3.32
116 117 1.902508 CCCTGTAGATGTGTGGTCAGT 59.097 52.381 0.00 0.00 0.00 3.41
138 139 0.826062 CCCTTGGCAATGGTGAATCC 59.174 55.000 12.84 0.00 0.00 3.01
139 140 1.560505 ACCCTTGGCAATGGTGAATC 58.439 50.000 23.90 0.00 0.00 2.52
140 141 2.917713 TACCCTTGGCAATGGTGAAT 57.082 45.000 30.09 11.48 33.55 2.57
141 142 2.917713 ATACCCTTGGCAATGGTGAA 57.082 45.000 30.09 16.31 33.55 3.18
142 143 4.079500 TGATTATACCCTTGGCAATGGTGA 60.080 41.667 30.09 18.37 33.55 4.02
143 144 4.214310 TGATTATACCCTTGGCAATGGTG 58.786 43.478 30.09 15.83 33.55 4.17
144 145 4.534647 TGATTATACCCTTGGCAATGGT 57.465 40.909 26.73 26.73 36.15 3.55
145 146 5.327732 AGATGATTATACCCTTGGCAATGG 58.672 41.667 18.55 18.55 0.00 3.16
146 147 6.942005 TGTAGATGATTATACCCTTGGCAATG 59.058 38.462 0.00 0.00 0.00 2.82
147 148 7.090319 TGTAGATGATTATACCCTTGGCAAT 57.910 36.000 0.00 0.00 0.00 3.56
148 149 6.465751 CCTGTAGATGATTATACCCTTGGCAA 60.466 42.308 0.00 0.00 0.00 4.52
149 150 5.013079 CCTGTAGATGATTATACCCTTGGCA 59.987 44.000 0.00 0.00 0.00 4.92
150 151 5.491982 CCTGTAGATGATTATACCCTTGGC 58.508 45.833 0.00 0.00 0.00 4.52
151 152 5.548056 ACCCTGTAGATGATTATACCCTTGG 59.452 44.000 0.00 0.00 0.00 3.61
152 153 6.467677 CACCCTGTAGATGATTATACCCTTG 58.532 44.000 0.00 0.00 0.00 3.61
153 154 5.548056 CCACCCTGTAGATGATTATACCCTT 59.452 44.000 0.00 0.00 0.00 3.95
154 155 5.094387 CCACCCTGTAGATGATTATACCCT 58.906 45.833 0.00 0.00 0.00 4.34
155 156 5.091552 TCCACCCTGTAGATGATTATACCC 58.908 45.833 0.00 0.00 0.00 3.69
156 157 6.875972 ATCCACCCTGTAGATGATTATACC 57.124 41.667 0.00 0.00 0.00 2.73
157 158 7.819900 GTGAATCCACCCTGTAGATGATTATAC 59.180 40.741 0.00 0.00 37.33 1.47
158 159 7.907389 GTGAATCCACCCTGTAGATGATTATA 58.093 38.462 0.00 0.00 37.33 0.98
159 160 6.773638 GTGAATCCACCCTGTAGATGATTAT 58.226 40.000 0.00 0.00 37.33 1.28
160 161 6.174720 GTGAATCCACCCTGTAGATGATTA 57.825 41.667 0.00 0.00 37.33 1.75
161 162 5.041191 GTGAATCCACCCTGTAGATGATT 57.959 43.478 0.00 0.00 37.33 2.57
162 163 4.696479 GTGAATCCACCCTGTAGATGAT 57.304 45.455 0.00 0.00 37.33 2.45
191 192 7.014230 CGAACAATTTCCCATGATTATACCCTT 59.986 37.037 0.00 0.00 0.00 3.95
207 208 3.485743 GGTTTCACTGTGCGAACAATTTC 59.514 43.478 20.49 6.71 0.00 2.17
208 209 3.130340 AGGTTTCACTGTGCGAACAATTT 59.870 39.130 20.49 7.40 0.00 1.82
211 212 1.668751 GAGGTTTCACTGTGCGAACAA 59.331 47.619 20.49 2.92 0.00 2.83
216 217 0.042188 CGTTGAGGTTTCACTGTGCG 60.042 55.000 2.12 0.00 31.71 5.34
222 223 1.002792 GTTGAGCCGTTGAGGTTTCAC 60.003 52.381 0.00 0.00 43.70 3.18
224 225 0.234884 CGTTGAGCCGTTGAGGTTTC 59.765 55.000 0.00 0.00 43.70 2.78
237 238 4.523813 AGACGTTAAACATTTGCGTTGAG 58.476 39.130 0.00 0.00 34.85 3.02
238 239 4.539509 AGACGTTAAACATTTGCGTTGA 57.460 36.364 0.00 0.00 34.85 3.18
239 240 6.412653 AGTTTAGACGTTAAACATTTGCGTTG 59.587 34.615 23.13 0.00 39.24 4.10
240 241 6.488817 AGTTTAGACGTTAAACATTTGCGTT 58.511 32.000 23.13 7.98 39.24 4.84
241 242 6.051646 AGTTTAGACGTTAAACATTTGCGT 57.948 33.333 23.13 8.00 39.24 5.24
242 243 6.412653 ACAAGTTTAGACGTTAAACATTTGCG 59.587 34.615 23.13 13.20 39.24 4.85
243 244 7.429920 TCACAAGTTTAGACGTTAAACATTTGC 59.570 33.333 23.13 6.94 39.24 3.68
256 257 6.532988 AGGGAGTAGATCACAAGTTTAGAC 57.467 41.667 0.00 0.00 31.63 2.59
262 263 6.726764 AGTTAAGAAGGGAGTAGATCACAAGT 59.273 38.462 0.00 0.00 31.63 3.16
263 264 7.176589 AGTTAAGAAGGGAGTAGATCACAAG 57.823 40.000 0.00 0.00 31.63 3.16
315 316 8.810327 TTTTTACAAGACGTTTTTAAGTCTCG 57.190 30.769 0.00 0.00 45.91 4.04
329 331 7.231925 TCCCCCTGTCTTAAATTTTTACAAGAC 59.768 37.037 18.51 18.51 33.90 3.01
341 343 4.412858 TGTGTTTACTCCCCCTGTCTTAAA 59.587 41.667 0.00 0.00 0.00 1.52
346 348 2.943036 TTGTGTTTACTCCCCCTGTC 57.057 50.000 0.00 0.00 0.00 3.51
348 350 5.304357 AGAAAATTTGTGTTTACTCCCCCTG 59.696 40.000 0.00 0.00 0.00 4.45
349 351 5.464069 AGAAAATTTGTGTTTACTCCCCCT 58.536 37.500 0.00 0.00 0.00 4.79
350 352 5.801531 AGAAAATTTGTGTTTACTCCCCC 57.198 39.130 0.00 0.00 0.00 5.40
417 421 8.966868 CAGGCCAGGTTTAAAATATTCTAGAAA 58.033 33.333 9.71 0.00 0.00 2.52
418 422 7.559897 CCAGGCCAGGTTTAAAATATTCTAGAA 59.440 37.037 7.82 7.82 0.00 2.10
419 423 7.060421 CCAGGCCAGGTTTAAAATATTCTAGA 58.940 38.462 5.01 0.00 0.00 2.43
420 424 6.239036 GCCAGGCCAGGTTTAAAATATTCTAG 60.239 42.308 16.66 0.00 0.00 2.43
484 493 4.313282 CTCATGTCATGTGGCACTATAGG 58.687 47.826 19.83 0.00 29.57 2.57
600 617 2.942376 GTTCATGATGGCAATGGACGTA 59.058 45.455 0.00 0.00 0.00 3.57
601 618 1.745087 GTTCATGATGGCAATGGACGT 59.255 47.619 0.00 0.00 0.00 4.34
602 619 1.268184 CGTTCATGATGGCAATGGACG 60.268 52.381 16.20 16.20 0.00 4.79
643 660 4.368315 CTTGCTTGGACTTTGGGTTTTAC 58.632 43.478 0.00 0.00 0.00 2.01
692 714 1.450312 GGGATGCCTCTCGTGTTGG 60.450 63.158 0.00 0.00 0.00 3.77
703 725 0.821301 GGAAGCTAGCTTGGGATGCC 60.821 60.000 33.91 22.49 36.26 4.40
733 755 0.402504 TGGCGGTATTCTTTGGGTGT 59.597 50.000 0.00 0.00 0.00 4.16
734 756 1.762708 ATGGCGGTATTCTTTGGGTG 58.237 50.000 0.00 0.00 0.00 4.61
735 757 2.525105 AATGGCGGTATTCTTTGGGT 57.475 45.000 0.00 0.00 0.00 4.51
749 771 2.611292 CAGTGTCAGCTAAGCTAATGGC 59.389 50.000 0.00 0.00 36.40 4.40
935 977 0.250597 GGAATTCCCGGGGGATTACG 60.251 60.000 23.50 0.00 44.74 3.18
936 978 1.073444 GAGGAATTCCCGGGGGATTAC 59.927 57.143 20.50 20.50 44.74 1.89
1044 1086 4.719369 AAGAGCGCGACCACGACC 62.719 66.667 12.10 0.00 42.66 4.79
1440 1491 3.764466 ACGAGCAGCTTCTCCCCG 61.764 66.667 7.84 0.00 0.00 5.73
1528 1579 0.727398 GTGGGAGTAATTGCACGCTC 59.273 55.000 9.04 2.75 0.00 5.03
1543 1594 0.597377 GTTGAAAGCAAAGCGGTGGG 60.597 55.000 0.00 0.00 35.42 4.61
1548 1599 1.202405 ACTTGGGTTGAAAGCAAAGCG 60.202 47.619 8.88 0.00 40.30 4.68
1571 1622 4.210120 CGCATGATTAGTCTTACTCAAGCC 59.790 45.833 0.00 0.00 32.68 4.35
1572 1623 5.043903 TCGCATGATTAGTCTTACTCAAGC 58.956 41.667 0.00 0.00 32.86 4.01
1639 1690 1.655484 TTACGATGCTGGCACATGAG 58.345 50.000 0.00 0.00 38.20 2.90
1641 1692 3.607775 GCTAATTACGATGCTGGCACATG 60.608 47.826 7.19 0.00 38.20 3.21
1650 1704 2.734079 GGAGCAGAGCTAATTACGATGC 59.266 50.000 0.00 0.00 39.88 3.91
1653 1707 2.022195 ACGGAGCAGAGCTAATTACGA 58.978 47.619 0.00 0.00 39.88 3.43
1654 1708 2.033550 AGACGGAGCAGAGCTAATTACG 59.966 50.000 0.00 0.00 39.88 3.18
1655 1709 3.316868 AGAGACGGAGCAGAGCTAATTAC 59.683 47.826 0.00 0.00 39.88 1.89
1818 1872 5.482526 TGAAGACACATGGCTAAAGGTAGTA 59.517 40.000 0.00 0.00 29.55 1.82
1819 1873 4.286032 TGAAGACACATGGCTAAAGGTAGT 59.714 41.667 0.00 0.00 29.55 2.73
1820 1874 4.631813 GTGAAGACACATGGCTAAAGGTAG 59.368 45.833 0.00 0.00 45.32 3.18
1883 1937 1.112113 GGAGTATTGAGCTGTCCCGA 58.888 55.000 0.00 0.00 0.00 5.14
1897 1951 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1898 1952 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1899 1953 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1900 1954 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1901 1955 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1902 1956 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1903 1957 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1904 1958 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1905 1959 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
1906 1960 8.970691 AAAATTGAGTCATCTATTTTGGAACG 57.029 30.769 11.47 0.00 44.08 3.95
1943 1997 9.716531 GACCCAACTTTATACTAACTTTGTACT 57.283 33.333 0.00 0.00 0.00 2.73
1944 1998 9.492973 TGACCCAACTTTATACTAACTTTGTAC 57.507 33.333 0.00 0.00 0.00 2.90
1946 2000 9.227777 GATGACCCAACTTTATACTAACTTTGT 57.772 33.333 0.00 0.00 0.00 2.83
1947 2001 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
1957 2011 9.628500 GTTCCTAAATAGATGACCCAACTTTAT 57.372 33.333 0.00 0.00 0.00 1.40
1958 2012 7.767198 CGTTCCTAAATAGATGACCCAACTTTA 59.233 37.037 0.00 0.00 0.00 1.85
1959 2013 6.598064 CGTTCCTAAATAGATGACCCAACTTT 59.402 38.462 0.00 0.00 0.00 2.66
1960 2014 6.113411 CGTTCCTAAATAGATGACCCAACTT 58.887 40.000 0.00 0.00 0.00 2.66
1961 2015 5.396436 CCGTTCCTAAATAGATGACCCAACT 60.396 44.000 0.00 0.00 0.00 3.16
1962 2016 4.814771 CCGTTCCTAAATAGATGACCCAAC 59.185 45.833 0.00 0.00 0.00 3.77
1963 2017 4.717778 TCCGTTCCTAAATAGATGACCCAA 59.282 41.667 0.00 0.00 0.00 4.12
1964 2018 4.291792 TCCGTTCCTAAATAGATGACCCA 58.708 43.478 0.00 0.00 0.00 4.51
1965 2019 4.262506 CCTCCGTTCCTAAATAGATGACCC 60.263 50.000 0.00 0.00 0.00 4.46
1966 2020 4.262506 CCCTCCGTTCCTAAATAGATGACC 60.263 50.000 0.00 0.00 0.00 4.02
1967 2021 4.587684 TCCCTCCGTTCCTAAATAGATGAC 59.412 45.833 0.00 0.00 0.00 3.06
1968 2022 4.811498 TCCCTCCGTTCCTAAATAGATGA 58.189 43.478 0.00 0.00 0.00 2.92
1969 2023 4.589374 ACTCCCTCCGTTCCTAAATAGATG 59.411 45.833 0.00 0.00 0.00 2.90
1970 2024 4.817286 ACTCCCTCCGTTCCTAAATAGAT 58.183 43.478 0.00 0.00 0.00 1.98
1971 2025 4.261411 ACTCCCTCCGTTCCTAAATAGA 57.739 45.455 0.00 0.00 0.00 1.98
1972 2026 5.139001 ACTACTCCCTCCGTTCCTAAATAG 58.861 45.833 0.00 0.00 0.00 1.73
1973 2027 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1974 2028 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1975 2029 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1976 2030 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
1977 2031 2.309755 TCAACTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
1978 2032 1.076677 TCAACTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
1979 2033 1.553706 TCAACTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
1980 2034 4.996788 TTATCAACTACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
1981 2035 4.161754 CCTTTATCAACTACTCCCTCCGTT 59.838 45.833 0.00 0.00 0.00 4.44
1982 2036 3.705072 CCTTTATCAACTACTCCCTCCGT 59.295 47.826 0.00 0.00 0.00 4.69
1983 2037 3.705072 ACCTTTATCAACTACTCCCTCCG 59.295 47.826 0.00 0.00 0.00 4.63
1984 2038 4.470304 ACACCTTTATCAACTACTCCCTCC 59.530 45.833 0.00 0.00 0.00 4.30
1985 2039 5.678955 ACACCTTTATCAACTACTCCCTC 57.321 43.478 0.00 0.00 0.00 4.30
1986 2040 6.183361 ACAAACACCTTTATCAACTACTCCCT 60.183 38.462 0.00 0.00 0.00 4.20
1987 2041 6.002082 ACAAACACCTTTATCAACTACTCCC 58.998 40.000 0.00 0.00 0.00 4.30
1988 2042 6.708949 TCACAAACACCTTTATCAACTACTCC 59.291 38.462 0.00 0.00 0.00 3.85
1989 2043 7.724305 TCACAAACACCTTTATCAACTACTC 57.276 36.000 0.00 0.00 0.00 2.59
1990 2044 7.773690 AGTTCACAAACACCTTTATCAACTACT 59.226 33.333 0.00 0.00 37.88 2.57
1991 2045 7.927048 AGTTCACAAACACCTTTATCAACTAC 58.073 34.615 0.00 0.00 37.88 2.73
2124 2187 3.309682 ACTGAACAACACAGATCAACACG 59.690 43.478 0.00 0.00 38.55 4.49
2311 2423 5.076182 TCAACCTCACAAATGCCATAAAGA 58.924 37.500 0.00 0.00 0.00 2.52
2325 2437 4.276926 ACAGCTCAGAAAAATCAACCTCAC 59.723 41.667 0.00 0.00 0.00 3.51
2384 2496 7.664082 AAGAGCATATAATTCAACATCTCCG 57.336 36.000 0.00 0.00 0.00 4.63
2514 2626 7.781056 ACACCTCAAAAGTTATTGACAACAAT 58.219 30.769 0.00 0.00 46.64 2.71
2549 2665 3.287222 TGTCCTTTTCAAACCCTCACAG 58.713 45.455 0.00 0.00 0.00 3.66
2575 2691 6.128138 AGTAGTAGCAAAGAGGACCATTTT 57.872 37.500 0.00 0.00 0.00 1.82
2677 2793 8.336801 TCAATAGTGCAGTACGATATAGATGT 57.663 34.615 2.64 0.00 0.00 3.06
2681 2797 9.626045 TCAATTCAATAGTGCAGTACGATATAG 57.374 33.333 2.64 0.00 0.00 1.31
2687 2803 7.750458 ACATTTTCAATTCAATAGTGCAGTACG 59.250 33.333 2.64 0.00 0.00 3.67
2697 2813 5.184864 AGGCCGACACATTTTCAATTCAATA 59.815 36.000 0.00 0.00 0.00 1.90
2703 2819 4.082245 CCTAAAGGCCGACACATTTTCAAT 60.082 41.667 0.00 0.00 0.00 2.57
2746 2862 6.884295 CAGTAGTGGGAAAATCTCATGGTAAA 59.116 38.462 0.00 0.00 0.00 2.01
2864 2984 9.877137 GTAAAATTTAAAAAGGCAAATGTCAGG 57.123 29.630 0.00 0.00 0.00 3.86
2874 2994 6.368791 CCTCTGCAGGTAAAATTTAAAAAGGC 59.631 38.462 15.13 0.00 34.60 4.35
2877 2997 6.555360 TCCCCTCTGCAGGTAAAATTTAAAAA 59.445 34.615 15.13 0.00 38.30 1.94
2878 2998 6.078664 TCCCCTCTGCAGGTAAAATTTAAAA 58.921 36.000 15.13 0.00 38.30 1.52
2901 3021 5.618236 TCCCATCTCTGTGAATCATTGATC 58.382 41.667 0.00 0.00 0.00 2.92
2946 3066 3.329889 AGCCCCTTGACGATGCCA 61.330 61.111 0.00 0.00 0.00 4.92
3057 3177 1.432657 GTAGAGCCCGAAGTCCGAC 59.567 63.158 0.00 0.00 41.76 4.79
3060 3180 1.393487 GGAGGTAGAGCCCGAAGTCC 61.393 65.000 0.00 0.00 38.26 3.85
3324 3444 1.142748 CTGCTGGATCAGGTCGGAC 59.857 63.158 0.00 0.00 31.21 4.79
3329 3449 0.252479 CTTGCTCTGCTGGATCAGGT 59.748 55.000 0.00 0.00 34.91 4.00
3330 3450 0.540454 TCTTGCTCTGCTGGATCAGG 59.460 55.000 0.00 0.00 34.91 3.86
3354 3474 1.524849 GAGCTTCGCCTCATTCCCC 60.525 63.158 0.00 0.00 0.00 4.81
3399 3519 4.043200 GGCGAAGGGTTGCAGCAC 62.043 66.667 2.05 0.00 0.00 4.40
3435 3555 0.809241 GCCTCTTCAGGATGCGTCTG 60.809 60.000 5.77 2.67 43.65 3.51
3437 3557 1.519719 AGCCTCTTCAGGATGCGTC 59.480 57.895 0.00 0.00 43.65 5.19
3468 3588 2.315386 GGCGTGTTTCGGTCACCTC 61.315 63.158 0.00 0.00 40.26 3.85
3583 3836 4.551388 GAGTATAATTCAGGCGAGGTCTG 58.449 47.826 0.00 0.00 36.50 3.51
3591 3844 4.965200 ACAGAGGGAGTATAATTCAGGC 57.035 45.455 0.00 0.00 0.00 4.85
3635 3888 6.868622 AGGATCCATACATAGCGATCTAAAC 58.131 40.000 15.82 0.00 33.22 2.01
3636 3889 7.178451 TGAAGGATCCATACATAGCGATCTAAA 59.822 37.037 15.82 0.00 33.22 1.85
3637 3890 6.663523 TGAAGGATCCATACATAGCGATCTAA 59.336 38.462 15.82 0.00 33.22 2.10
3638 3891 6.187682 TGAAGGATCCATACATAGCGATCTA 58.812 40.000 15.82 0.00 33.22 1.98
3639 3892 5.019470 TGAAGGATCCATACATAGCGATCT 58.981 41.667 15.82 0.00 33.22 2.75
3640 3893 5.330455 TGAAGGATCCATACATAGCGATC 57.670 43.478 15.82 0.00 0.00 3.69
3673 3926 1.654220 CAAACAACCACCTCCGCAG 59.346 57.895 0.00 0.00 0.00 5.18
3695 3948 1.537202 GACCTTGTGAATGACCAGTGC 59.463 52.381 0.00 0.00 0.00 4.40
3696 3949 2.549754 GTGACCTTGTGAATGACCAGTG 59.450 50.000 0.00 0.00 0.00 3.66
3697 3950 2.439507 AGTGACCTTGTGAATGACCAGT 59.560 45.455 0.00 0.00 0.00 4.00
3698 3951 3.131709 AGTGACCTTGTGAATGACCAG 57.868 47.619 0.00 0.00 0.00 4.00
3705 3958 2.930950 CCAGGAAAGTGACCTTGTGAA 58.069 47.619 0.00 0.00 35.35 3.18
3813 4070 5.574830 CAGTAAAGAGATGTCGACAAGAAGG 59.425 44.000 24.13 1.21 0.00 3.46
3966 4223 2.159653 GCCAGACGTTTTAGCACTGATG 60.160 50.000 0.00 0.00 0.00 3.07
3967 4224 2.076863 GCCAGACGTTTTAGCACTGAT 58.923 47.619 0.00 0.00 0.00 2.90
4046 4333 2.016905 ACTGTTAGTGCCCACTCTCT 57.983 50.000 3.88 0.00 42.54 3.10
4101 4388 1.653151 GGATTTCTGTAGCCGGTGTC 58.347 55.000 1.90 0.00 0.00 3.67
4167 4454 1.941294 CTGATCTCTTCTGTGGCATGC 59.059 52.381 9.90 9.90 0.00 4.06
4197 4484 2.353889 GCTAAGATGACCAGTGCACATG 59.646 50.000 21.04 13.83 0.00 3.21
4198 4485 2.026915 TGCTAAGATGACCAGTGCACAT 60.027 45.455 21.04 2.53 0.00 3.21
4199 4486 1.347378 TGCTAAGATGACCAGTGCACA 59.653 47.619 21.04 0.00 0.00 4.57
4200 4487 2.099141 TGCTAAGATGACCAGTGCAC 57.901 50.000 9.40 9.40 0.00 4.57
4201 4488 2.236893 TGATGCTAAGATGACCAGTGCA 59.763 45.455 0.00 0.00 0.00 4.57
4204 4491 2.840038 TGGTGATGCTAAGATGACCAGT 59.160 45.455 0.00 0.00 34.99 4.00
4248 4535 1.615883 AGCTTCTGACACTGTCATCGT 59.384 47.619 12.34 0.00 41.94 3.73
4306 4593 1.298713 CGGAGTCAAGATCGCGGAG 60.299 63.158 6.13 0.00 0.00 4.63
4331 4618 5.768164 CCCGGTAAATCCAGTTGCTATTATT 59.232 40.000 0.00 0.00 35.57 1.40
4332 4619 5.072600 TCCCGGTAAATCCAGTTGCTATTAT 59.927 40.000 0.00 0.00 35.57 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.