Multiple sequence alignment - TraesCS2A01G416200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G416200 chr2A 100.000 3652 0 0 1 3652 672536217 672539868 0.000000e+00 6745.0
1 TraesCS2A01G416200 chr4B 98.827 2387 28 0 636 3022 139742624 139745010 0.000000e+00 4253.0
2 TraesCS2A01G416200 chr4B 96.957 2399 61 2 635 3022 2598689 2601086 0.000000e+00 4015.0
3 TraesCS2A01G416200 chr4B 94.295 631 12 1 3022 3652 139745305 139745911 0.000000e+00 944.0
4 TraesCS2A01G416200 chr4B 89.820 668 31 20 3022 3652 2611107 2611774 0.000000e+00 822.0
5 TraesCS2A01G416200 chr5A 98.785 2387 29 0 636 3022 346306297 346308683 0.000000e+00 4248.0
6 TraesCS2A01G416200 chr5A 96.672 631 9 1 3022 3652 346308978 346309596 0.000000e+00 1038.0
7 TraesCS2A01G416200 chr5A 93.617 47 3 0 1 47 469905278 469905324 1.820000e-08 71.3
8 TraesCS2A01G416200 chr1A 98.705 2393 31 0 636 3028 63763700 63761308 0.000000e+00 4248.0
9 TraesCS2A01G416200 chr1A 87.013 385 19 19 636 1004 63755668 63756037 4.390000e-109 405.0
10 TraesCS2A01G416200 chr1A 93.750 48 3 0 1 48 425239690 425239643 5.060000e-09 73.1
11 TraesCS2A01G416200 chr1B 98.663 2393 32 0 636 3028 167930126 167927734 0.000000e+00 4242.0
12 TraesCS2A01G416200 chr1B 96.545 492 13 3 3022 3512 167927542 167927054 0.000000e+00 811.0
13 TraesCS2A01G416200 chr1B 91.837 49 4 0 1 49 590415360 590415312 6.540000e-08 69.4
14 TraesCS2A01G416200 chr1B 88.889 54 6 0 1 54 207853804 207853751 2.350000e-07 67.6
15 TraesCS2A01G416200 chr3A 98.533 2386 35 0 637 3022 199412059 199414444 0.000000e+00 4213.0
16 TraesCS2A01G416200 chr3A 97.451 510 13 0 3022 3531 199414739 199415248 0.000000e+00 870.0
17 TraesCS2A01G416200 chr3B 97.670 2403 54 2 626 3028 681202918 681200518 0.000000e+00 4126.0
18 TraesCS2A01G416200 chr3B 97.543 2401 46 3 634 3022 731127040 731129439 0.000000e+00 4095.0
19 TraesCS2A01G416200 chr3B 94.136 631 13 1 3022 3652 731129685 731130291 0.000000e+00 939.0
20 TraesCS2A01G416200 chr3B 93.829 632 14 2 3022 3652 546819357 546818750 0.000000e+00 928.0
21 TraesCS2A01G416200 chr7B 97.668 2401 42 3 633 3022 554160473 554162870 0.000000e+00 4111.0
22 TraesCS2A01G416200 chr7B 94.689 546 22 3 3022 3560 554163642 554164187 0.000000e+00 841.0
23 TraesCS2A01G416200 chr7B 93.617 47 3 0 1 47 727420214 727420260 1.820000e-08 71.3
24 TraesCS2A01G416200 chr5B 96.203 632 23 1 3022 3652 265290721 265291352 0.000000e+00 1033.0
25 TraesCS2A01G416200 chr5B 90.404 198 16 3 3455 3652 56909256 56909450 1.300000e-64 257.0
26 TraesCS2A01G416200 chr5B 84.109 258 17 17 2780 3013 594885124 594884867 1.020000e-55 228.0
27 TraesCS2A01G416200 chr5B 99.107 112 1 0 2910 3021 265289908 265290019 6.180000e-48 202.0
28 TraesCS2A01G416200 chr5B 95.652 46 1 1 1 45 66021851 66021806 5.060000e-09 73.1
29 TraesCS2A01G416200 chr5B 89.286 56 4 2 1 55 508597955 508597901 6.540000e-08 69.4
30 TraesCS2A01G416200 chr2D 82.671 554 21 31 50 545 638606459 638605923 4.360000e-114 422.0
31 TraesCS2A01G416200 chrUn 87.908 306 15 9 47 352 309749145 309748862 1.260000e-89 340.0
32 TraesCS2A01G416200 chrUn 93.607 219 7 5 417 634 309748714 309748502 1.640000e-83 320.0
33 TraesCS2A01G416200 chr7A 87.908 306 15 9 47 352 597583967 597584250 1.260000e-89 340.0
34 TraesCS2A01G416200 chr7A 93.607 219 7 5 417 634 597584398 597584610 1.640000e-83 320.0
35 TraesCS2A01G416200 chr7A 88.945 199 19 2 3457 3652 89132055 89132253 3.640000e-60 243.0
36 TraesCS2A01G416200 chr4A 88.500 200 12 8 3460 3652 683249086 683248891 7.890000e-57 231.0
37 TraesCS2A01G416200 chr4A 92.000 50 2 2 1 50 418122081 418122128 6.540000e-08 69.4
38 TraesCS2A01G416200 chr6B 92.000 50 3 1 1 50 171807360 171807312 6.540000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G416200 chr2A 672536217 672539868 3651 False 6745.0 6745 100.0000 1 3652 1 chr2A.!!$F1 3651
1 TraesCS2A01G416200 chr4B 2598689 2601086 2397 False 4015.0 4015 96.9570 635 3022 1 chr4B.!!$F1 2387
2 TraesCS2A01G416200 chr4B 139742624 139745911 3287 False 2598.5 4253 96.5610 636 3652 2 chr4B.!!$F3 3016
3 TraesCS2A01G416200 chr4B 2611107 2611774 667 False 822.0 822 89.8200 3022 3652 1 chr4B.!!$F2 630
4 TraesCS2A01G416200 chr5A 346306297 346309596 3299 False 2643.0 4248 97.7285 636 3652 2 chr5A.!!$F2 3016
5 TraesCS2A01G416200 chr1A 63761308 63763700 2392 True 4248.0 4248 98.7050 636 3028 1 chr1A.!!$R1 2392
6 TraesCS2A01G416200 chr1B 167927054 167930126 3072 True 2526.5 4242 97.6040 636 3512 2 chr1B.!!$R3 2876
7 TraesCS2A01G416200 chr3A 199412059 199415248 3189 False 2541.5 4213 97.9920 637 3531 2 chr3A.!!$F1 2894
8 TraesCS2A01G416200 chr3B 681200518 681202918 2400 True 4126.0 4126 97.6700 626 3028 1 chr3B.!!$R2 2402
9 TraesCS2A01G416200 chr3B 731127040 731130291 3251 False 2517.0 4095 95.8395 634 3652 2 chr3B.!!$F1 3018
10 TraesCS2A01G416200 chr3B 546818750 546819357 607 True 928.0 928 93.8290 3022 3652 1 chr3B.!!$R1 630
11 TraesCS2A01G416200 chr7B 554160473 554164187 3714 False 2476.0 4111 96.1785 633 3560 2 chr7B.!!$F2 2927
12 TraesCS2A01G416200 chr5B 265289908 265291352 1444 False 617.5 1033 97.6550 2910 3652 2 chr5B.!!$F2 742
13 TraesCS2A01G416200 chr2D 638605923 638606459 536 True 422.0 422 82.6710 50 545 1 chr2D.!!$R1 495
14 TraesCS2A01G416200 chrUn 309748502 309749145 643 True 330.0 340 90.7575 47 634 2 chrUn.!!$R1 587
15 TraesCS2A01G416200 chr7A 597583967 597584610 643 False 330.0 340 90.7575 47 634 2 chr7A.!!$F2 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 521 0.032403 AGTACGGTTGTTGCGTGCTA 59.968 50.0 0.0 0.0 0.0 3.49 F
513 523 0.032403 TACGGTTGTTGCGTGCTAGT 59.968 50.0 0.0 0.0 0.0 2.57 F
631 641 0.035915 GGGACCTGACCTTTGCTCTC 60.036 60.0 0.0 0.0 0.0 3.20 F
1044 1067 0.832135 ACGAGAACTCAAGCCTCCCA 60.832 55.0 0.0 0.0 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1364 1.489230 ACCTTCTCCCAGTCGTTGTTT 59.511 47.619 0.0 0.00 0.00 2.83 R
1347 1370 2.417515 GCTAAGAACCTTCTCCCAGTCG 60.418 54.545 0.0 0.00 36.28 4.18 R
2581 2724 1.065636 CCTCTGCCTTCATGAGCTCAA 60.066 52.381 22.5 1.31 0.00 3.02 R
2760 2904 4.757149 AGATAAACAGCCAGAGTTCACAAC 59.243 41.667 0.0 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.370066 CAAATTTGGGCCGGCGCA 62.370 61.111 39.14 39.14 36.38 6.09
27 28 4.371590 AAATTTGGGCCGGCGCAC 62.372 61.111 41.97 24.75 38.61 5.34
55 56 0.107361 AGCGGTGCCCTATGGTTAAC 60.107 55.000 0.00 0.00 0.00 2.01
65 66 2.629617 CCTATGGTTAACGGGGTATCGT 59.370 50.000 0.00 0.00 46.08 3.73
66 67 3.826157 CCTATGGTTAACGGGGTATCGTA 59.174 47.826 0.00 0.00 43.07 3.43
67 68 3.733443 ATGGTTAACGGGGTATCGTAC 57.267 47.619 0.00 0.00 43.07 3.67
68 69 1.403679 TGGTTAACGGGGTATCGTACG 59.596 52.381 9.53 9.53 43.07 3.67
109 119 2.659897 CTCGCAGCCGTAGATGCC 60.660 66.667 0.00 0.00 36.84 4.40
110 120 3.144120 CTCGCAGCCGTAGATGCCT 62.144 63.158 0.00 0.00 36.84 4.75
151 161 1.566077 GTCCGTTCCGTTCCGTTTG 59.434 57.895 0.00 0.00 0.00 2.93
152 162 2.246042 TCCGTTCCGTTCCGTTTGC 61.246 57.895 0.00 0.00 0.00 3.68
153 163 2.248835 CCGTTCCGTTCCGTTTGCT 61.249 57.895 0.00 0.00 0.00 3.91
154 164 0.945265 CCGTTCCGTTCCGTTTGCTA 60.945 55.000 0.00 0.00 0.00 3.49
155 165 0.860533 CGTTCCGTTCCGTTTGCTAA 59.139 50.000 0.00 0.00 0.00 3.09
156 166 1.461897 CGTTCCGTTCCGTTTGCTAAT 59.538 47.619 0.00 0.00 0.00 1.73
157 167 2.096119 CGTTCCGTTCCGTTTGCTAATT 60.096 45.455 0.00 0.00 0.00 1.40
158 168 3.231160 GTTCCGTTCCGTTTGCTAATTG 58.769 45.455 0.00 0.00 0.00 2.32
159 169 1.807742 TCCGTTCCGTTTGCTAATTGG 59.192 47.619 0.00 0.00 0.00 3.16
160 170 1.613270 CGTTCCGTTTGCTAATTGGC 58.387 50.000 6.88 6.88 0.00 4.52
161 171 1.068885 CGTTCCGTTTGCTAATTGGCA 60.069 47.619 13.03 13.03 40.74 4.92
175 185 2.513897 GGCAATTAGCGCCTCCGT 60.514 61.111 2.29 0.00 46.56 4.69
176 186 2.709475 GCAATTAGCGCCTCCGTG 59.291 61.111 2.29 0.00 36.67 4.94
177 187 2.823829 GCAATTAGCGCCTCCGTGG 61.824 63.158 2.29 0.00 36.67 4.94
190 200 2.748251 CGTGGCCCGCACCAAATA 60.748 61.111 0.00 0.00 42.70 1.40
191 201 2.336478 CGTGGCCCGCACCAAATAA 61.336 57.895 0.00 0.00 42.70 1.40
192 202 1.867919 CGTGGCCCGCACCAAATAAA 61.868 55.000 0.00 0.00 42.70 1.40
193 203 0.534873 GTGGCCCGCACCAAATAAAT 59.465 50.000 0.00 0.00 42.70 1.40
194 204 0.534412 TGGCCCGCACCAAATAAATG 59.466 50.000 0.00 0.00 36.55 2.32
195 205 0.179086 GGCCCGCACCAAATAAATGG 60.179 55.000 0.00 0.00 46.38 3.16
196 206 0.809636 GCCCGCACCAAATAAATGGC 60.810 55.000 0.00 0.00 44.75 4.40
197 207 0.534412 CCCGCACCAAATAAATGGCA 59.466 50.000 0.00 0.00 44.75 4.92
198 208 1.639280 CCGCACCAAATAAATGGCAC 58.361 50.000 0.00 0.00 44.75 5.01
199 209 1.639280 CGCACCAAATAAATGGCACC 58.361 50.000 0.00 0.00 44.75 5.01
200 210 1.639280 GCACCAAATAAATGGCACCG 58.361 50.000 0.00 0.00 44.75 4.94
201 211 1.203523 GCACCAAATAAATGGCACCGA 59.796 47.619 0.00 0.00 44.75 4.69
202 212 2.874849 CACCAAATAAATGGCACCGAC 58.125 47.619 0.00 0.00 44.75 4.79
203 213 2.491693 CACCAAATAAATGGCACCGACT 59.508 45.455 0.00 0.00 44.75 4.18
204 214 2.752903 ACCAAATAAATGGCACCGACTC 59.247 45.455 0.00 0.00 44.75 3.36
205 215 2.099098 CCAAATAAATGGCACCGACTCC 59.901 50.000 0.00 0.00 32.78 3.85
206 216 3.016736 CAAATAAATGGCACCGACTCCT 58.983 45.455 0.00 0.00 0.00 3.69
207 217 2.622064 ATAAATGGCACCGACTCCTC 57.378 50.000 0.00 0.00 0.00 3.71
208 218 1.271856 TAAATGGCACCGACTCCTCA 58.728 50.000 0.00 0.00 0.00 3.86
209 219 0.400213 AAATGGCACCGACTCCTCAA 59.600 50.000 0.00 0.00 0.00 3.02
210 220 0.620556 AATGGCACCGACTCCTCAAT 59.379 50.000 0.00 0.00 0.00 2.57
211 221 0.179000 ATGGCACCGACTCCTCAATC 59.821 55.000 0.00 0.00 0.00 2.67
212 222 1.519455 GGCACCGACTCCTCAATCG 60.519 63.158 0.00 0.00 38.08 3.34
213 223 1.215647 GCACCGACTCCTCAATCGT 59.784 57.895 0.00 0.00 36.60 3.73
214 224 0.802607 GCACCGACTCCTCAATCGTC 60.803 60.000 0.00 0.00 36.60 4.20
216 226 1.586564 CCGACTCCTCAATCGTCGC 60.587 63.158 5.60 0.00 46.49 5.19
217 227 1.934956 CGACTCCTCAATCGTCGCG 60.935 63.158 0.00 0.00 43.02 5.87
218 228 1.428219 GACTCCTCAATCGTCGCGA 59.572 57.895 3.71 3.71 41.13 5.87
219 229 0.590230 GACTCCTCAATCGTCGCGAG 60.590 60.000 10.24 3.82 39.91 5.03
220 230 1.025113 ACTCCTCAATCGTCGCGAGA 61.025 55.000 10.24 10.10 39.91 4.04
221 231 0.316607 CTCCTCAATCGTCGCGAGAG 60.317 60.000 10.24 12.47 43.49 3.20
222 232 1.298713 CCTCAATCGTCGCGAGAGG 60.299 63.158 22.23 22.23 46.73 3.69
223 233 1.429825 CTCAATCGTCGCGAGAGGT 59.570 57.895 10.24 0.00 45.61 3.85
224 234 0.656259 CTCAATCGTCGCGAGAGGTA 59.344 55.000 10.24 0.00 45.61 3.08
225 235 1.063616 CTCAATCGTCGCGAGAGGTAA 59.936 52.381 10.24 0.00 45.61 2.85
226 236 1.469703 TCAATCGTCGCGAGAGGTAAA 59.530 47.619 10.24 0.00 45.61 2.01
227 237 2.098607 TCAATCGTCGCGAGAGGTAAAT 59.901 45.455 10.24 0.00 45.61 1.40
228 238 2.121116 ATCGTCGCGAGAGGTAAATG 57.879 50.000 10.24 0.00 45.61 2.32
229 239 0.099968 TCGTCGCGAGAGGTAAATGG 59.900 55.000 10.24 0.00 45.61 3.16
230 240 0.099968 CGTCGCGAGAGGTAAATGGA 59.900 55.000 10.24 0.00 43.49 3.41
231 241 1.468565 CGTCGCGAGAGGTAAATGGAA 60.469 52.381 10.24 0.00 43.49 3.53
232 242 2.613691 GTCGCGAGAGGTAAATGGAAA 58.386 47.619 10.24 0.00 43.49 3.13
233 243 3.195661 GTCGCGAGAGGTAAATGGAAAT 58.804 45.455 10.24 0.00 43.49 2.17
234 244 3.001330 GTCGCGAGAGGTAAATGGAAATG 59.999 47.826 10.24 0.00 43.49 2.32
235 245 3.118920 TCGCGAGAGGTAAATGGAAATGA 60.119 43.478 3.71 0.00 34.84 2.57
236 246 3.621268 CGCGAGAGGTAAATGGAAATGAA 59.379 43.478 0.00 0.00 0.00 2.57
237 247 4.273480 CGCGAGAGGTAAATGGAAATGAAT 59.727 41.667 0.00 0.00 0.00 2.57
238 248 5.220854 CGCGAGAGGTAAATGGAAATGAATT 60.221 40.000 0.00 0.00 0.00 2.17
239 249 6.018262 CGCGAGAGGTAAATGGAAATGAATTA 60.018 38.462 0.00 0.00 0.00 1.40
240 250 7.132863 GCGAGAGGTAAATGGAAATGAATTAC 58.867 38.462 0.00 0.00 0.00 1.89
241 251 7.012421 GCGAGAGGTAAATGGAAATGAATTACT 59.988 37.037 0.00 0.00 0.00 2.24
242 252 9.542462 CGAGAGGTAAATGGAAATGAATTACTA 57.458 33.333 0.00 0.00 0.00 1.82
246 256 9.975218 AGGTAAATGGAAATGAATTACTACTGT 57.025 29.630 0.00 0.00 0.00 3.55
250 260 9.840427 AAATGGAAATGAATTACTACTGTTTCG 57.160 29.630 0.00 0.00 0.00 3.46
251 261 6.837992 TGGAAATGAATTACTACTGTTTCGC 58.162 36.000 0.00 0.00 0.00 4.70
252 262 6.128117 TGGAAATGAATTACTACTGTTTCGCC 60.128 38.462 0.00 0.00 0.00 5.54
253 263 6.093633 GGAAATGAATTACTACTGTTTCGCCT 59.906 38.462 0.00 0.00 0.00 5.52
254 264 6.663944 AATGAATTACTACTGTTTCGCCTC 57.336 37.500 0.00 0.00 0.00 4.70
255 265 4.501071 TGAATTACTACTGTTTCGCCTCC 58.499 43.478 0.00 0.00 0.00 4.30
256 266 3.538634 ATTACTACTGTTTCGCCTCCC 57.461 47.619 0.00 0.00 0.00 4.30
257 267 1.188863 TACTACTGTTTCGCCTCCCC 58.811 55.000 0.00 0.00 0.00 4.81
258 268 1.221021 CTACTGTTTCGCCTCCCCC 59.779 63.158 0.00 0.00 0.00 5.40
259 269 1.536907 TACTGTTTCGCCTCCCCCA 60.537 57.895 0.00 0.00 0.00 4.96
260 270 1.550130 TACTGTTTCGCCTCCCCCAG 61.550 60.000 0.00 0.00 0.00 4.45
261 271 2.528127 TGTTTCGCCTCCCCCAGA 60.528 61.111 0.00 0.00 0.00 3.86
262 272 2.046217 GTTTCGCCTCCCCCAGAC 60.046 66.667 0.00 0.00 0.00 3.51
263 273 3.702048 TTTCGCCTCCCCCAGACG 61.702 66.667 0.00 0.00 0.00 4.18
268 278 4.787280 CCTCCCCCAGACGGCTCT 62.787 72.222 0.00 0.00 0.00 4.09
269 279 3.151022 CTCCCCCAGACGGCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
270 280 4.779733 TCCCCCAGACGGCTCTCC 62.780 72.222 0.00 0.00 0.00 3.71
280 290 3.320359 GGCTCTCCCCCGAATGAA 58.680 61.111 0.00 0.00 0.00 2.57
281 291 1.839894 GGCTCTCCCCCGAATGAAT 59.160 57.895 0.00 0.00 0.00 2.57
282 292 0.250510 GGCTCTCCCCCGAATGAATC 60.251 60.000 0.00 0.00 0.00 2.52
295 305 4.637574 GAATGAATCGAATCGAATCGCT 57.362 40.909 17.89 5.64 38.45 4.93
296 306 4.623177 GAATGAATCGAATCGAATCGCTC 58.377 43.478 17.89 15.79 38.45 5.03
297 307 2.394708 TGAATCGAATCGAATCGCTCC 58.605 47.619 17.89 9.16 38.45 4.70
298 308 1.383744 GAATCGAATCGAATCGCTCCG 59.616 52.381 17.89 0.89 42.44 4.63
299 309 0.591659 ATCGAATCGAATCGCTCCGA 59.408 50.000 17.89 13.05 42.44 4.55
300 310 0.041224 TCGAATCGAATCGCTCCGAG 60.041 55.000 17.89 0.00 42.44 4.63
301 311 0.041224 CGAATCGAATCGCTCCGAGA 60.041 55.000 10.33 0.00 39.91 4.04
302 312 1.400550 GAATCGAATCGCTCCGAGAC 58.599 55.000 0.00 0.00 39.91 3.36
303 313 0.317103 AATCGAATCGCTCCGAGACG 60.317 55.000 0.00 2.81 39.91 4.18
304 314 1.158484 ATCGAATCGCTCCGAGACGA 61.158 55.000 14.44 14.44 44.88 4.20
305 315 1.368255 CGAATCGCTCCGAGACGAG 60.368 63.158 16.34 4.33 42.31 4.18
306 316 1.763200 CGAATCGCTCCGAGACGAGA 61.763 60.000 16.34 4.22 42.31 4.04
307 317 0.316360 GAATCGCTCCGAGACGAGAC 60.316 60.000 16.34 10.84 42.31 3.36
308 318 2.037913 AATCGCTCCGAGACGAGACG 62.038 60.000 16.34 3.60 42.31 4.18
309 319 2.902759 ATCGCTCCGAGACGAGACGA 62.903 60.000 16.34 8.07 42.31 4.20
310 320 2.704616 GCTCCGAGACGAGACGAG 59.295 66.667 0.00 0.00 30.97 4.18
311 321 1.810441 GCTCCGAGACGAGACGAGA 60.810 63.158 0.00 0.00 30.97 4.04
312 322 2.000587 CTCCGAGACGAGACGAGAC 58.999 63.158 0.00 0.00 30.97 3.36
313 323 0.736672 CTCCGAGACGAGACGAGACA 60.737 60.000 0.00 0.00 30.97 3.41
314 324 0.736672 TCCGAGACGAGACGAGACAG 60.737 60.000 0.00 0.00 0.00 3.51
315 325 1.059681 CGAGACGAGACGAGACAGC 59.940 63.158 0.00 0.00 0.00 4.40
316 326 1.059681 GAGACGAGACGAGACAGCG 59.940 63.158 0.00 0.00 37.29 5.18
317 327 2.574736 GACGAGACGAGACAGCGC 60.575 66.667 0.00 0.00 33.86 5.92
318 328 4.447069 ACGAGACGAGACAGCGCG 62.447 66.667 0.00 0.00 43.24 6.86
320 330 4.838486 GAGACGAGACAGCGCGGG 62.838 72.222 13.26 6.53 41.84 6.13
332 342 4.595538 CGCGGGCCAGCCGTATTA 62.596 66.667 22.76 0.00 36.85 0.98
333 343 2.032071 GCGGGCCAGCCGTATTAT 59.968 61.111 18.10 0.00 36.85 1.28
334 344 1.599797 GCGGGCCAGCCGTATTATT 60.600 57.895 18.10 0.00 36.85 1.40
335 345 0.320946 GCGGGCCAGCCGTATTATTA 60.321 55.000 18.10 0.00 36.85 0.98
336 346 1.878948 GCGGGCCAGCCGTATTATTAA 60.879 52.381 18.10 0.00 36.85 1.40
337 347 2.496111 CGGGCCAGCCGTATTATTAAA 58.504 47.619 4.39 0.00 36.85 1.52
338 348 2.482721 CGGGCCAGCCGTATTATTAAAG 59.517 50.000 4.39 0.00 36.85 1.85
339 349 3.483421 GGGCCAGCCGTATTATTAAAGT 58.517 45.455 4.39 0.00 36.85 2.66
340 350 3.501062 GGGCCAGCCGTATTATTAAAGTC 59.499 47.826 4.39 0.00 36.85 3.01
341 351 4.386711 GGCCAGCCGTATTATTAAAGTCT 58.613 43.478 0.00 0.00 0.00 3.24
342 352 4.451435 GGCCAGCCGTATTATTAAAGTCTC 59.549 45.833 0.00 0.00 0.00 3.36
343 353 4.451435 GCCAGCCGTATTATTAAAGTCTCC 59.549 45.833 0.00 0.00 0.00 3.71
344 354 5.742255 GCCAGCCGTATTATTAAAGTCTCCT 60.742 44.000 0.00 0.00 0.00 3.69
345 355 5.927115 CCAGCCGTATTATTAAAGTCTCCTC 59.073 44.000 0.00 0.00 0.00 3.71
346 356 5.927115 CAGCCGTATTATTAAAGTCTCCTCC 59.073 44.000 0.00 0.00 0.00 4.30
347 357 5.839606 AGCCGTATTATTAAAGTCTCCTCCT 59.160 40.000 0.00 0.00 0.00 3.69
348 358 6.015265 AGCCGTATTATTAAAGTCTCCTCCTC 60.015 42.308 0.00 0.00 0.00 3.71
349 359 6.689554 CCGTATTATTAAAGTCTCCTCCTCC 58.310 44.000 0.00 0.00 0.00 4.30
350 360 6.494146 CCGTATTATTAAAGTCTCCTCCTCCT 59.506 42.308 0.00 0.00 0.00 3.69
351 361 7.309316 CCGTATTATTAAAGTCTCCTCCTCCTC 60.309 44.444 0.00 0.00 0.00 3.71
352 362 6.658188 ATTATTAAAGTCTCCTCCTCCTCG 57.342 41.667 0.00 0.00 0.00 4.63
353 363 3.453059 TTAAAGTCTCCTCCTCCTCGT 57.547 47.619 0.00 0.00 0.00 4.18
354 364 2.312424 AAAGTCTCCTCCTCCTCGTT 57.688 50.000 0.00 0.00 0.00 3.85
355 365 1.842052 AAGTCTCCTCCTCCTCGTTC 58.158 55.000 0.00 0.00 0.00 3.95
356 366 0.393267 AGTCTCCTCCTCCTCGTTCG 60.393 60.000 0.00 0.00 0.00 3.95
357 367 1.749638 TCTCCTCCTCCTCGTTCGC 60.750 63.158 0.00 0.00 0.00 4.70
358 368 1.751162 CTCCTCCTCCTCGTTCGCT 60.751 63.158 0.00 0.00 0.00 4.93
359 369 1.999071 CTCCTCCTCCTCGTTCGCTG 61.999 65.000 0.00 0.00 0.00 5.18
360 370 2.202676 CTCCTCCTCGTTCGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
361 371 2.676822 TCCTCCTCGTTCGCTGCT 60.677 61.111 0.00 0.00 0.00 4.24
362 372 2.507992 CCTCCTCGTTCGCTGCTG 60.508 66.667 0.00 0.00 0.00 4.41
363 373 3.184683 CTCCTCGTTCGCTGCTGC 61.185 66.667 5.34 5.34 0.00 5.25
364 374 3.921767 CTCCTCGTTCGCTGCTGCA 62.922 63.158 16.29 0.88 39.64 4.41
365 375 2.816958 CCTCGTTCGCTGCTGCAT 60.817 61.111 16.29 0.00 39.64 3.96
366 376 2.398429 CTCGTTCGCTGCTGCATG 59.602 61.111 16.29 0.00 39.64 4.06
367 377 3.713615 CTCGTTCGCTGCTGCATGC 62.714 63.158 11.82 11.82 43.25 4.06
379 389 4.107051 GCATGCGCGGTCAGCTTT 62.107 61.111 8.83 0.00 45.59 3.51
380 390 2.202388 CATGCGCGGTCAGCTTTG 60.202 61.111 8.83 0.00 45.59 2.77
381 391 2.669569 ATGCGCGGTCAGCTTTGT 60.670 55.556 8.83 0.00 45.59 2.83
382 392 2.969806 ATGCGCGGTCAGCTTTGTG 61.970 57.895 8.83 0.00 45.59 3.33
383 393 3.345808 GCGCGGTCAGCTTTGTGA 61.346 61.111 8.83 0.00 45.59 3.58
384 394 2.680913 GCGCGGTCAGCTTTGTGAT 61.681 57.895 8.83 0.00 45.59 3.06
385 395 1.133253 CGCGGTCAGCTTTGTGATG 59.867 57.895 0.00 0.00 45.59 3.07
386 396 1.568612 CGCGGTCAGCTTTGTGATGT 61.569 55.000 0.00 0.00 45.59 3.06
387 397 0.110056 GCGGTCAGCTTTGTGATGTG 60.110 55.000 0.00 0.00 44.04 3.21
388 398 1.229428 CGGTCAGCTTTGTGATGTGT 58.771 50.000 0.00 0.00 33.14 3.72
389 399 1.069703 CGGTCAGCTTTGTGATGTGTG 60.070 52.381 0.00 0.00 33.14 3.82
390 400 2.221169 GGTCAGCTTTGTGATGTGTGA 58.779 47.619 0.00 0.00 33.14 3.58
391 401 2.031682 GGTCAGCTTTGTGATGTGTGAC 60.032 50.000 0.00 0.00 33.14 3.67
392 402 2.613595 GTCAGCTTTGTGATGTGTGACA 59.386 45.455 0.00 0.00 34.33 3.58
393 403 2.613595 TCAGCTTTGTGATGTGTGACAC 59.386 45.455 9.14 9.14 37.51 3.67
445 455 3.602390 AAAAAGATGTGACCGTGAACG 57.398 42.857 0.00 0.00 39.44 3.95
446 456 2.234300 AAAGATGTGACCGTGAACGT 57.766 45.000 1.75 0.00 37.74 3.99
447 457 1.497991 AAGATGTGACCGTGAACGTG 58.502 50.000 1.75 0.00 37.74 4.49
448 458 0.671796 AGATGTGACCGTGAACGTGA 59.328 50.000 1.75 0.00 37.74 4.35
449 459 0.782384 GATGTGACCGTGAACGTGAC 59.218 55.000 1.75 0.00 37.74 3.67
450 460 0.937699 ATGTGACCGTGAACGTGACG 60.938 55.000 2.24 2.24 37.74 4.35
451 461 1.298563 GTGACCGTGAACGTGACGA 60.299 57.895 13.70 0.05 39.21 4.20
452 462 1.009335 TGACCGTGAACGTGACGAG 60.009 57.895 13.70 12.42 39.21 4.18
453 463 2.354305 ACCGTGAACGTGACGAGC 60.354 61.111 13.70 3.18 39.21 5.03
454 464 3.458579 CCGTGAACGTGACGAGCG 61.459 66.667 13.70 9.88 39.21 5.03
455 465 4.104633 CGTGAACGTGACGAGCGC 62.105 66.667 13.70 0.00 39.21 5.92
456 466 3.028019 GTGAACGTGACGAGCGCA 61.028 61.111 13.70 0.58 0.00 6.09
457 467 3.028019 TGAACGTGACGAGCGCAC 61.028 61.111 13.70 0.96 0.00 5.34
458 468 2.729862 GAACGTGACGAGCGCACT 60.730 61.111 13.70 0.00 34.18 4.40
459 469 2.708059 GAACGTGACGAGCGCACTC 61.708 63.158 13.70 3.71 39.75 3.51
460 470 3.478724 AACGTGACGAGCGCACTCA 62.479 57.895 13.70 6.53 43.66 3.41
461 471 3.461982 CGTGACGAGCGCACTCAC 61.462 66.667 11.47 16.97 43.66 3.51
462 472 2.049985 GTGACGAGCGCACTCACT 60.050 61.111 20.99 0.00 43.66 3.41
463 473 1.209383 GTGACGAGCGCACTCACTA 59.791 57.895 20.99 0.00 43.66 2.74
464 474 0.179161 GTGACGAGCGCACTCACTAT 60.179 55.000 20.99 0.00 43.66 2.12
465 475 1.063616 GTGACGAGCGCACTCACTATA 59.936 52.381 20.99 0.00 43.66 1.31
466 476 1.947456 TGACGAGCGCACTCACTATAT 59.053 47.619 11.47 0.00 43.66 0.86
467 477 3.059120 GTGACGAGCGCACTCACTATATA 60.059 47.826 20.99 0.00 43.66 0.86
468 478 3.751698 TGACGAGCGCACTCACTATATAT 59.248 43.478 11.47 0.00 43.66 0.86
469 479 4.142881 TGACGAGCGCACTCACTATATATC 60.143 45.833 11.47 0.00 43.66 1.63
470 480 3.127203 ACGAGCGCACTCACTATATATCC 59.873 47.826 11.47 0.00 43.66 2.59
471 481 3.127030 CGAGCGCACTCACTATATATCCA 59.873 47.826 11.47 0.00 43.66 3.41
472 482 4.416620 GAGCGCACTCACTATATATCCAC 58.583 47.826 11.47 0.00 42.93 4.02
473 483 3.119814 AGCGCACTCACTATATATCCACG 60.120 47.826 11.47 0.00 0.00 4.94
474 484 3.172050 CGCACTCACTATATATCCACGC 58.828 50.000 0.00 0.00 0.00 5.34
475 485 3.119814 CGCACTCACTATATATCCACGCT 60.120 47.826 0.00 0.00 0.00 5.07
476 486 4.094442 CGCACTCACTATATATCCACGCTA 59.906 45.833 0.00 0.00 0.00 4.26
477 487 5.333513 GCACTCACTATATATCCACGCTAC 58.666 45.833 0.00 0.00 0.00 3.58
478 488 5.124138 GCACTCACTATATATCCACGCTACT 59.876 44.000 0.00 0.00 0.00 2.57
479 489 6.675971 GCACTCACTATATATCCACGCTACTC 60.676 46.154 0.00 0.00 0.00 2.59
480 490 5.881443 ACTCACTATATATCCACGCTACTCC 59.119 44.000 0.00 0.00 0.00 3.85
481 491 4.874396 TCACTATATATCCACGCTACTCCG 59.126 45.833 0.00 0.00 0.00 4.63
482 492 4.874396 CACTATATATCCACGCTACTCCGA 59.126 45.833 0.00 0.00 0.00 4.55
483 493 4.874966 ACTATATATCCACGCTACTCCGAC 59.125 45.833 0.00 0.00 0.00 4.79
484 494 0.873054 ATATCCACGCTACTCCGACG 59.127 55.000 0.00 0.00 0.00 5.12
485 495 1.779025 TATCCACGCTACTCCGACGC 61.779 60.000 0.00 0.00 0.00 5.19
489 499 2.053291 CGCTACTCCGACGCGTAG 60.053 66.667 13.97 13.30 41.78 3.51
490 500 2.806856 CGCTACTCCGACGCGTAGT 61.807 63.158 13.97 15.63 41.78 2.73
491 501 1.482621 CGCTACTCCGACGCGTAGTA 61.483 60.000 13.97 15.96 41.78 1.82
492 502 0.652592 GCTACTCCGACGCGTAGTAA 59.347 55.000 13.97 1.08 36.39 2.24
493 503 1.332728 GCTACTCCGACGCGTAGTAAG 60.333 57.143 13.97 14.29 36.39 2.34
494 504 1.929836 CTACTCCGACGCGTAGTAAGT 59.070 52.381 13.97 19.29 0.00 2.24
495 505 2.010145 ACTCCGACGCGTAGTAAGTA 57.990 50.000 13.97 0.00 0.00 2.24
496 506 1.661112 ACTCCGACGCGTAGTAAGTAC 59.339 52.381 13.97 0.00 0.00 2.73
506 516 3.959609 GTAGTAAGTACGGTTGTTGCG 57.040 47.619 0.00 0.00 0.00 4.85
507 517 2.514205 AGTAAGTACGGTTGTTGCGT 57.486 45.000 0.00 0.00 0.00 5.24
508 518 2.129607 AGTAAGTACGGTTGTTGCGTG 58.870 47.619 0.00 0.00 0.00 5.34
509 519 0.860533 TAAGTACGGTTGTTGCGTGC 59.139 50.000 0.00 0.00 0.00 5.34
510 520 0.812412 AAGTACGGTTGTTGCGTGCT 60.812 50.000 0.00 0.00 0.00 4.40
511 521 0.032403 AGTACGGTTGTTGCGTGCTA 59.968 50.000 0.00 0.00 0.00 3.49
512 522 0.437295 GTACGGTTGTTGCGTGCTAG 59.563 55.000 0.00 0.00 0.00 3.42
513 523 0.032403 TACGGTTGTTGCGTGCTAGT 59.968 50.000 0.00 0.00 0.00 2.57
514 524 0.032403 ACGGTTGTTGCGTGCTAGTA 59.968 50.000 0.00 0.00 0.00 1.82
515 525 1.141645 CGGTTGTTGCGTGCTAGTAA 58.858 50.000 0.00 0.00 0.00 2.24
516 526 1.730064 CGGTTGTTGCGTGCTAGTAAT 59.270 47.619 0.00 0.00 0.00 1.89
517 527 2.924926 CGGTTGTTGCGTGCTAGTAATA 59.075 45.455 0.00 0.00 0.00 0.98
518 528 3.241868 CGGTTGTTGCGTGCTAGTAATAC 60.242 47.826 0.00 0.00 0.00 1.89
519 529 3.241868 GGTTGTTGCGTGCTAGTAATACG 60.242 47.826 0.00 0.00 40.52 3.06
520 530 2.532235 TGTTGCGTGCTAGTAATACGG 58.468 47.619 11.05 0.00 38.20 4.02
521 531 2.164017 TGTTGCGTGCTAGTAATACGGA 59.836 45.455 11.05 6.96 38.20 4.69
522 532 2.480224 TGCGTGCTAGTAATACGGAC 57.520 50.000 11.05 0.00 38.20 4.79
523 533 1.268184 TGCGTGCTAGTAATACGGACG 60.268 52.381 7.68 7.68 38.20 4.79
524 534 1.268234 GCGTGCTAGTAATACGGACGT 60.268 52.381 12.03 1.98 38.20 4.34
525 535 2.369600 CGTGCTAGTAATACGGACGTG 58.630 52.381 7.73 0.00 34.43 4.49
526 536 2.114825 GTGCTAGTAATACGGACGTGC 58.885 52.381 7.73 0.00 0.00 5.34
527 537 1.066002 TGCTAGTAATACGGACGTGCC 59.934 52.381 7.73 0.00 0.00 5.01
528 538 1.601412 GCTAGTAATACGGACGTGCCC 60.601 57.143 7.73 0.00 0.00 5.36
529 539 1.677576 CTAGTAATACGGACGTGCCCA 59.322 52.381 7.73 0.00 0.00 5.36
530 540 1.117150 AGTAATACGGACGTGCCCAT 58.883 50.000 7.73 0.00 0.00 4.00
531 541 1.483415 AGTAATACGGACGTGCCCATT 59.517 47.619 7.73 3.81 0.00 3.16
532 542 2.093341 AGTAATACGGACGTGCCCATTT 60.093 45.455 7.73 0.00 0.00 2.32
533 543 1.828979 AATACGGACGTGCCCATTTT 58.171 45.000 7.73 0.00 0.00 1.82
534 544 1.828979 ATACGGACGTGCCCATTTTT 58.171 45.000 7.73 0.00 0.00 1.94
561 571 9.516546 TGCTAATATATGTGCTACTACTACTGT 57.483 33.333 10.33 0.00 0.00 3.55
608 618 4.686191 TCCATTTGGAATTGCAACTGTT 57.314 36.364 22.43 0.00 42.18 3.16
609 619 4.378774 TCCATTTGGAATTGCAACTGTTG 58.621 39.130 22.43 15.98 42.18 3.33
610 620 3.499157 CCATTTGGAATTGCAACTGTTGG 59.501 43.478 22.43 17.30 37.39 3.77
611 621 3.902881 TTTGGAATTGCAACTGTTGGT 57.097 38.095 21.01 0.00 0.00 3.67
612 622 2.886862 TGGAATTGCAACTGTTGGTG 57.113 45.000 21.01 0.00 0.00 4.17
613 623 1.411977 TGGAATTGCAACTGTTGGTGG 59.588 47.619 21.01 0.00 0.00 4.61
614 624 1.270252 GGAATTGCAACTGTTGGTGGG 60.270 52.381 21.01 0.00 0.00 4.61
615 625 1.686052 GAATTGCAACTGTTGGTGGGA 59.314 47.619 21.01 0.00 0.00 4.37
616 626 1.039856 ATTGCAACTGTTGGTGGGAC 58.960 50.000 21.01 4.85 0.00 4.46
617 627 1.040339 TTGCAACTGTTGGTGGGACC 61.040 55.000 21.01 4.18 39.22 4.46
618 628 1.152756 GCAACTGTTGGTGGGACCT 60.153 57.895 21.01 0.00 39.58 3.85
619 629 1.455383 GCAACTGTTGGTGGGACCTG 61.455 60.000 21.01 0.00 39.58 4.00
620 630 0.182537 CAACTGTTGGTGGGACCTGA 59.817 55.000 12.66 0.00 39.58 3.86
621 631 0.182775 AACTGTTGGTGGGACCTGAC 59.817 55.000 0.00 0.00 39.58 3.51
622 632 1.073199 CTGTTGGTGGGACCTGACC 59.927 63.158 6.34 6.34 39.58 4.02
623 633 1.385347 TGTTGGTGGGACCTGACCT 60.385 57.895 12.74 0.00 39.58 3.85
624 634 0.991355 TGTTGGTGGGACCTGACCTT 60.991 55.000 12.74 0.00 39.58 3.50
625 635 0.185175 GTTGGTGGGACCTGACCTTT 59.815 55.000 12.74 0.00 39.58 3.11
626 636 0.184933 TTGGTGGGACCTGACCTTTG 59.815 55.000 12.74 0.00 39.58 2.77
627 637 1.603739 GGTGGGACCTGACCTTTGC 60.604 63.158 6.09 0.00 34.73 3.68
628 638 1.456287 GTGGGACCTGACCTTTGCT 59.544 57.895 0.00 0.00 0.00 3.91
629 639 0.606673 GTGGGACCTGACCTTTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
630 640 0.768221 TGGGACCTGACCTTTGCTCT 60.768 55.000 0.00 0.00 0.00 4.09
631 641 0.035915 GGGACCTGACCTTTGCTCTC 60.036 60.000 0.00 0.00 0.00 3.20
683 693 2.025037 TGGGGCATTAGAAGCAGATTGT 60.025 45.455 0.00 0.00 0.00 2.71
1044 1067 0.832135 ACGAGAACTCAAGCCTCCCA 60.832 55.000 0.00 0.00 0.00 4.37
1134 1157 9.246670 GTTAGGGCTAGGTTTAGGAAAATTTTA 57.753 33.333 2.75 0.00 0.00 1.52
1149 1172 9.987272 AGGAAAATTTTAGGATTTTTCTGTCTG 57.013 29.630 2.75 0.00 41.22 3.51
1174 1197 3.149196 GGTCTTTGCTGTGAGGATTTCA 58.851 45.455 0.00 0.00 0.00 2.69
1341 1364 3.225104 AGAGGCTTGTTGCATTTGAAGA 58.775 40.909 0.00 0.00 45.15 2.87
1347 1370 5.257864 GCTTGTTGCATTTGAAGAAACAAC 58.742 37.500 0.00 0.00 42.31 3.32
1412 1435 6.964807 TCTTGCCTTATTGATTATGCACAT 57.035 33.333 0.00 0.00 0.00 3.21
2142 2285 9.136323 ACCATTTGACAGAAGAAAATAAGAAGT 57.864 29.630 0.00 0.00 0.00 3.01
2307 2450 7.660617 TGAATGCAAAAATGGCAAAGAAAGATA 59.339 29.630 0.00 0.00 45.60 1.98
2316 2459 5.804639 TGGCAAAGAAAGATACAGCTCTAA 58.195 37.500 0.00 0.00 0.00 2.10
2581 2724 8.517062 AAGCAGATGCAAGAGTTTAAGATTAT 57.483 30.769 7.68 0.00 45.16 1.28
2782 2926 4.757149 AGTTGTGAACTCTGGCTGTTTATC 59.243 41.667 0.00 0.00 37.02 1.75
2908 3057 8.784043 GTGTTGAACTCCAGTTAGTATCATTTT 58.216 33.333 0.00 0.00 38.56 1.82
3238 4434 4.023279 GCAAAGATGACATTGTACACCACA 60.023 41.667 0.00 0.00 34.51 4.17
3303 4977 3.468071 TCCAGTATGTCTACCACCAGT 57.532 47.619 0.00 0.00 0.00 4.00
3320 4994 1.347707 CAGTACCTCTCCCAGCAACAA 59.652 52.381 0.00 0.00 0.00 2.83
3473 5147 2.046507 CAGCACCTCTCCCAGCAC 60.047 66.667 0.00 0.00 0.00 4.40
3504 5202 0.905337 GCACCTCTACCACCACCTCT 60.905 60.000 0.00 0.00 0.00 3.69
3505 5203 1.187087 CACCTCTACCACCACCTCTC 58.813 60.000 0.00 0.00 0.00 3.20
3506 5204 0.041386 ACCTCTACCACCACCTCTCC 59.959 60.000 0.00 0.00 0.00 3.71
3507 5205 0.688087 CCTCTACCACCACCTCTCCC 60.688 65.000 0.00 0.00 0.00 4.30
3508 5206 0.041238 CTCTACCACCACCTCTCCCA 59.959 60.000 0.00 0.00 0.00 4.37
3509 5207 0.041238 TCTACCACCACCTCTCCCAG 59.959 60.000 0.00 0.00 0.00 4.45
3510 5208 1.612442 TACCACCACCTCTCCCAGC 60.612 63.158 0.00 0.00 0.00 4.85
3511 5209 2.106923 TACCACCACCTCTCCCAGCT 62.107 60.000 0.00 0.00 0.00 4.24
3512 5210 2.664081 CCACCACCTCTCCCAGCTC 61.664 68.421 0.00 0.00 0.00 4.09
3513 5211 2.284995 ACCACCTCTCCCAGCTCC 60.285 66.667 0.00 0.00 0.00 4.70
3514 5212 2.040278 CCACCTCTCCCAGCTCCT 59.960 66.667 0.00 0.00 0.00 3.69
3515 5213 2.063378 CCACCTCTCCCAGCTCCTC 61.063 68.421 0.00 0.00 0.00 3.71
3516 5214 1.001503 CACCTCTCCCAGCTCCTCT 59.998 63.158 0.00 0.00 0.00 3.69
3517 5215 1.042559 CACCTCTCCCAGCTCCTCTC 61.043 65.000 0.00 0.00 0.00 3.20
3518 5216 1.457455 CCTCTCCCAGCTCCTCTCC 60.457 68.421 0.00 0.00 0.00 3.71
3519 5217 1.457455 CTCTCCCAGCTCCTCTCCC 60.457 68.421 0.00 0.00 0.00 4.30
3520 5218 2.235602 CTCTCCCAGCTCCTCTCCCA 62.236 65.000 0.00 0.00 0.00 4.37
3521 5219 1.761667 CTCCCAGCTCCTCTCCCAG 60.762 68.421 0.00 0.00 0.00 4.45
3522 5220 3.478274 CCCAGCTCCTCTCCCAGC 61.478 72.222 0.00 0.00 35.73 4.85
3524 5222 2.433994 CCAGCTCCTCTCCCAGCTC 61.434 68.421 0.00 0.00 44.47 4.09
3525 5223 2.042025 AGCTCCTCTCCCAGCTCC 60.042 66.667 0.00 0.00 42.60 4.70
3526 5224 2.042025 GCTCCTCTCCCAGCTCCT 60.042 66.667 0.00 0.00 32.48 3.69
3527 5225 2.133641 GCTCCTCTCCCAGCTCCTC 61.134 68.421 0.00 0.00 32.48 3.71
3531 5229 1.620259 CTCTCCCAGCTCCTCTCCT 59.380 63.158 0.00 0.00 0.00 3.69
3576 5361 2.942376 CAGCTGTTGGTGTTGTTGTAGA 59.058 45.455 5.25 0.00 36.97 2.59
3629 5417 1.064003 AGTAGCACCACCACCATTGA 58.936 50.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.571231 CCAAATTTGGGCCGGTCG 59.429 61.111 26.87 1.10 44.70 4.79
9 10 4.370066 TGCGCCGGCCCAAATTTG 62.370 61.111 23.46 11.40 38.85 2.32
10 11 4.371590 GTGCGCCGGCCCAAATTT 62.372 61.111 23.46 0.00 38.85 1.82
40 41 0.464916 CCCCGTTAACCATAGGGCAC 60.465 60.000 10.06 0.00 42.47 5.01
41 42 0.915387 ACCCCGTTAACCATAGGGCA 60.915 55.000 14.51 0.00 41.86 5.36
42 43 1.130777 TACCCCGTTAACCATAGGGC 58.869 55.000 14.51 0.00 41.86 5.19
43 44 2.028748 CGATACCCCGTTAACCATAGGG 60.029 54.545 13.47 13.47 43.88 3.53
44 45 2.629617 ACGATACCCCGTTAACCATAGG 59.370 50.000 0.00 0.00 40.17 2.57
45 46 4.613622 CGTACGATACCCCGTTAACCATAG 60.614 50.000 10.44 0.00 43.20 2.23
55 56 4.201724 GCTATAAGTACGTACGATACCCCG 60.202 50.000 24.41 10.35 0.00 5.73
65 66 2.618241 CCACCACCGCTATAAGTACGTA 59.382 50.000 0.00 0.00 0.00 3.57
66 67 1.406539 CCACCACCGCTATAAGTACGT 59.593 52.381 0.00 0.00 0.00 3.57
67 68 1.269413 CCCACCACCGCTATAAGTACG 60.269 57.143 0.00 0.00 0.00 3.67
68 69 1.069668 CCCCACCACCGCTATAAGTAC 59.930 57.143 0.00 0.00 0.00 2.73
159 169 2.709475 CACGGAGGCGCTAATTGC 59.291 61.111 7.64 0.00 38.57 3.56
160 170 3.409856 CCACGGAGGCGCTAATTG 58.590 61.111 7.64 0.00 0.00 2.32
173 183 1.867919 TTTATTTGGTGCGGGCCACG 61.868 55.000 4.39 7.24 45.62 4.94
174 184 0.534873 ATTTATTTGGTGCGGGCCAC 59.465 50.000 4.39 0.00 43.90 5.01
175 185 0.534412 CATTTATTTGGTGCGGGCCA 59.466 50.000 4.39 0.00 36.62 5.36
176 186 0.179086 CCATTTATTTGGTGCGGGCC 60.179 55.000 0.00 0.00 31.74 5.80
177 187 0.809636 GCCATTTATTTGGTGCGGGC 60.810 55.000 0.00 0.00 39.11 6.13
178 188 0.534412 TGCCATTTATTTGGTGCGGG 59.466 50.000 0.00 0.00 39.11 6.13
179 189 1.639280 GTGCCATTTATTTGGTGCGG 58.361 50.000 0.00 0.00 39.11 5.69
180 190 1.639280 GGTGCCATTTATTTGGTGCG 58.361 50.000 0.00 0.00 39.11 5.34
181 191 1.203523 TCGGTGCCATTTATTTGGTGC 59.796 47.619 0.00 0.00 39.11 5.01
182 192 2.491693 AGTCGGTGCCATTTATTTGGTG 59.508 45.455 0.00 0.00 39.11 4.17
183 193 2.752903 GAGTCGGTGCCATTTATTTGGT 59.247 45.455 0.00 0.00 39.11 3.67
184 194 2.099098 GGAGTCGGTGCCATTTATTTGG 59.901 50.000 0.00 0.00 39.94 3.28
185 195 3.016736 AGGAGTCGGTGCCATTTATTTG 58.983 45.455 0.00 0.00 0.00 2.32
186 196 3.279434 GAGGAGTCGGTGCCATTTATTT 58.721 45.455 0.00 0.00 0.00 1.40
187 197 2.238646 TGAGGAGTCGGTGCCATTTATT 59.761 45.455 0.00 0.00 0.00 1.40
188 198 1.837439 TGAGGAGTCGGTGCCATTTAT 59.163 47.619 0.00 0.00 0.00 1.40
189 199 1.271856 TGAGGAGTCGGTGCCATTTA 58.728 50.000 0.00 0.00 0.00 1.40
190 200 0.400213 TTGAGGAGTCGGTGCCATTT 59.600 50.000 0.00 0.00 0.00 2.32
191 201 0.620556 ATTGAGGAGTCGGTGCCATT 59.379 50.000 0.00 0.00 0.00 3.16
192 202 0.179000 GATTGAGGAGTCGGTGCCAT 59.821 55.000 0.00 0.00 0.00 4.40
193 203 1.596934 GATTGAGGAGTCGGTGCCA 59.403 57.895 0.00 0.00 0.00 4.92
194 204 1.519455 CGATTGAGGAGTCGGTGCC 60.519 63.158 0.00 0.00 34.39 5.01
195 205 0.802607 GACGATTGAGGAGTCGGTGC 60.803 60.000 0.00 0.00 41.87 5.01
196 206 3.330766 GACGATTGAGGAGTCGGTG 57.669 57.895 0.00 0.00 41.87 4.94
200 210 0.590230 CTCGCGACGATTGAGGAGTC 60.590 60.000 3.71 0.00 34.61 3.36
201 211 1.025113 TCTCGCGACGATTGAGGAGT 61.025 55.000 3.71 0.00 34.61 3.85
202 212 0.316607 CTCTCGCGACGATTGAGGAG 60.317 60.000 3.71 3.74 34.61 3.69
203 213 1.715862 CCTCTCGCGACGATTGAGGA 61.716 60.000 28.25 11.95 45.21 3.71
204 214 1.298713 CCTCTCGCGACGATTGAGG 60.299 63.158 22.23 22.23 40.22 3.86
205 215 0.656259 TACCTCTCGCGACGATTGAG 59.344 55.000 3.71 10.22 34.61 3.02
206 216 1.089112 TTACCTCTCGCGACGATTGA 58.911 50.000 3.71 0.00 34.61 2.57
207 217 1.904144 TTTACCTCTCGCGACGATTG 58.096 50.000 3.71 0.00 34.61 2.67
208 218 2.460918 CATTTACCTCTCGCGACGATT 58.539 47.619 3.71 0.31 34.61 3.34
209 219 1.269102 CCATTTACCTCTCGCGACGAT 60.269 52.381 3.71 0.00 34.61 3.73
210 220 0.099968 CCATTTACCTCTCGCGACGA 59.900 55.000 3.71 6.39 0.00 4.20
211 221 0.099968 TCCATTTACCTCTCGCGACG 59.900 55.000 3.71 1.32 0.00 5.12
212 222 2.288961 TTCCATTTACCTCTCGCGAC 57.711 50.000 3.71 0.00 0.00 5.19
213 223 3.118920 TCATTTCCATTTACCTCTCGCGA 60.119 43.478 9.26 9.26 0.00 5.87
214 224 3.194861 TCATTTCCATTTACCTCTCGCG 58.805 45.455 0.00 0.00 0.00 5.87
215 225 5.757850 ATTCATTTCCATTTACCTCTCGC 57.242 39.130 0.00 0.00 0.00 5.03
216 226 8.438676 AGTAATTCATTTCCATTTACCTCTCG 57.561 34.615 0.00 0.00 0.00 4.04
220 230 9.975218 ACAGTAGTAATTCATTTCCATTTACCT 57.025 29.630 0.00 0.00 0.00 3.08
224 234 9.840427 CGAAACAGTAGTAATTCATTTCCATTT 57.160 29.630 0.00 0.00 0.00 2.32
225 235 7.968405 GCGAAACAGTAGTAATTCATTTCCATT 59.032 33.333 0.00 0.00 0.00 3.16
226 236 7.415206 GGCGAAACAGTAGTAATTCATTTCCAT 60.415 37.037 0.00 0.00 0.00 3.41
227 237 6.128117 GGCGAAACAGTAGTAATTCATTTCCA 60.128 38.462 0.00 0.00 0.00 3.53
228 238 6.093633 AGGCGAAACAGTAGTAATTCATTTCC 59.906 38.462 0.00 0.00 0.00 3.13
229 239 7.073342 AGGCGAAACAGTAGTAATTCATTTC 57.927 36.000 0.00 0.00 0.00 2.17
230 240 6.093633 GGAGGCGAAACAGTAGTAATTCATTT 59.906 38.462 0.00 0.00 0.00 2.32
231 241 5.585047 GGAGGCGAAACAGTAGTAATTCATT 59.415 40.000 0.00 0.00 0.00 2.57
232 242 5.116882 GGAGGCGAAACAGTAGTAATTCAT 58.883 41.667 0.00 0.00 0.00 2.57
233 243 4.501071 GGAGGCGAAACAGTAGTAATTCA 58.499 43.478 0.00 0.00 0.00 2.57
234 244 3.869832 GGGAGGCGAAACAGTAGTAATTC 59.130 47.826 0.00 0.00 0.00 2.17
235 245 3.370209 GGGGAGGCGAAACAGTAGTAATT 60.370 47.826 0.00 0.00 0.00 1.40
236 246 2.169978 GGGGAGGCGAAACAGTAGTAAT 59.830 50.000 0.00 0.00 0.00 1.89
237 247 1.551883 GGGGAGGCGAAACAGTAGTAA 59.448 52.381 0.00 0.00 0.00 2.24
238 248 1.188863 GGGGAGGCGAAACAGTAGTA 58.811 55.000 0.00 0.00 0.00 1.82
239 249 1.551019 GGGGGAGGCGAAACAGTAGT 61.551 60.000 0.00 0.00 0.00 2.73
240 250 1.221021 GGGGGAGGCGAAACAGTAG 59.779 63.158 0.00 0.00 0.00 2.57
241 251 1.536907 TGGGGGAGGCGAAACAGTA 60.537 57.895 0.00 0.00 0.00 2.74
242 252 2.852075 TGGGGGAGGCGAAACAGT 60.852 61.111 0.00 0.00 0.00 3.55
243 253 2.045926 CTGGGGGAGGCGAAACAG 60.046 66.667 0.00 0.00 0.00 3.16
244 254 2.528127 TCTGGGGGAGGCGAAACA 60.528 61.111 0.00 0.00 0.00 2.83
245 255 2.046217 GTCTGGGGGAGGCGAAAC 60.046 66.667 0.00 0.00 0.00 2.78
251 261 4.787280 AGAGCCGTCTGGGGGAGG 62.787 72.222 0.00 0.00 35.78 4.30
252 262 3.151022 GAGAGCCGTCTGGGGGAG 61.151 72.222 0.00 0.00 35.78 4.30
253 263 4.779733 GGAGAGCCGTCTGGGGGA 62.780 72.222 0.00 0.00 35.78 4.81
259 269 3.680920 ATTCGGGGGAGAGCCGTCT 62.681 63.158 0.00 0.00 34.86 4.18
260 270 3.155167 ATTCGGGGGAGAGCCGTC 61.155 66.667 0.00 0.00 33.83 4.79
261 271 3.470888 CATTCGGGGGAGAGCCGT 61.471 66.667 0.00 0.00 33.83 5.68
262 272 2.044806 ATTCATTCGGGGGAGAGCCG 62.045 60.000 0.00 0.00 33.83 5.52
263 273 0.250510 GATTCATTCGGGGGAGAGCC 60.251 60.000 0.00 0.00 0.00 4.70
264 274 0.601311 CGATTCATTCGGGGGAGAGC 60.601 60.000 0.00 0.00 44.28 4.09
265 275 3.595691 CGATTCATTCGGGGGAGAG 57.404 57.895 0.00 0.00 44.28 3.20
274 284 4.433544 GGAGCGATTCGATTCGATTCATTC 60.434 45.833 28.28 19.21 41.62 2.67
275 285 3.430218 GGAGCGATTCGATTCGATTCATT 59.570 43.478 28.28 14.15 41.62 2.57
276 286 2.989840 GGAGCGATTCGATTCGATTCAT 59.010 45.455 28.28 14.71 41.62 2.57
277 287 2.394708 GGAGCGATTCGATTCGATTCA 58.605 47.619 28.28 6.59 41.62 2.57
282 292 0.041224 TCTCGGAGCGATTCGATTCG 60.041 55.000 18.36 18.36 45.96 3.34
283 293 1.400550 GTCTCGGAGCGATTCGATTC 58.599 55.000 3.69 0.29 34.61 2.52
284 294 0.317103 CGTCTCGGAGCGATTCGATT 60.317 55.000 3.69 0.00 35.37 3.34
285 295 1.158484 TCGTCTCGGAGCGATTCGAT 61.158 55.000 3.69 2.44 36.59 3.59
286 296 1.763200 CTCGTCTCGGAGCGATTCGA 61.763 60.000 19.43 3.09 38.01 3.71
287 297 1.368255 CTCGTCTCGGAGCGATTCG 60.368 63.158 19.43 0.00 36.50 3.34
288 298 0.316360 GTCTCGTCTCGGAGCGATTC 60.316 60.000 19.43 13.60 36.50 2.52
289 299 1.722677 GTCTCGTCTCGGAGCGATT 59.277 57.895 19.43 0.00 36.50 3.34
290 300 2.526993 CGTCTCGTCTCGGAGCGAT 61.527 63.158 19.43 0.00 36.42 4.58
291 301 3.186730 CGTCTCGTCTCGGAGCGA 61.187 66.667 18.52 18.52 36.42 4.93
292 302 3.145375 CTCGTCTCGTCTCGGAGCG 62.145 68.421 13.26 13.26 35.99 5.03
293 303 1.810441 TCTCGTCTCGTCTCGGAGC 60.810 63.158 0.00 0.00 33.98 4.70
294 304 0.736672 TGTCTCGTCTCGTCTCGGAG 60.737 60.000 0.00 0.00 35.32 4.63
295 305 0.736672 CTGTCTCGTCTCGTCTCGGA 60.737 60.000 0.00 0.00 0.00 4.55
296 306 1.710919 CTGTCTCGTCTCGTCTCGG 59.289 63.158 0.00 0.00 0.00 4.63
297 307 1.059681 GCTGTCTCGTCTCGTCTCG 59.940 63.158 0.00 0.00 0.00 4.04
298 308 1.059681 CGCTGTCTCGTCTCGTCTC 59.940 63.158 0.00 0.00 0.00 3.36
299 309 3.029564 GCGCTGTCTCGTCTCGTCT 62.030 63.158 0.00 0.00 0.00 4.18
300 310 2.574736 GCGCTGTCTCGTCTCGTC 60.575 66.667 0.00 0.00 0.00 4.20
301 311 4.447069 CGCGCTGTCTCGTCTCGT 62.447 66.667 5.56 0.00 0.00 4.18
303 313 4.838486 CCCGCGCTGTCTCGTCTC 62.838 72.222 5.56 0.00 0.00 3.36
318 328 3.483421 ACTTTAATAATACGGCTGGCCC 58.517 45.455 0.00 0.00 0.00 5.80
319 329 4.386711 AGACTTTAATAATACGGCTGGCC 58.613 43.478 0.00 0.00 0.00 5.36
320 330 4.451435 GGAGACTTTAATAATACGGCTGGC 59.549 45.833 0.00 0.00 0.00 4.85
321 331 5.855045 AGGAGACTTTAATAATACGGCTGG 58.145 41.667 0.00 0.00 37.44 4.85
322 332 5.927115 GGAGGAGACTTTAATAATACGGCTG 59.073 44.000 0.00 0.00 44.43 4.85
323 333 5.839606 AGGAGGAGACTTTAATAATACGGCT 59.160 40.000 0.00 0.00 44.43 5.52
324 334 6.099159 AGGAGGAGACTTTAATAATACGGC 57.901 41.667 0.00 0.00 44.43 5.68
325 335 6.494146 AGGAGGAGGAGACTTTAATAATACGG 59.506 42.308 0.00 0.00 44.43 4.02
326 336 7.527568 AGGAGGAGGAGACTTTAATAATACG 57.472 40.000 0.00 0.00 44.43 3.06
327 337 7.231115 ACGAGGAGGAGGAGACTTTAATAATAC 59.769 40.741 0.00 0.00 44.43 1.89
328 338 7.296098 ACGAGGAGGAGGAGACTTTAATAATA 58.704 38.462 0.00 0.00 44.43 0.98
329 339 6.137559 ACGAGGAGGAGGAGACTTTAATAAT 58.862 40.000 0.00 0.00 44.43 1.28
330 340 5.516984 ACGAGGAGGAGGAGACTTTAATAA 58.483 41.667 0.00 0.00 44.43 1.40
331 341 5.126699 ACGAGGAGGAGGAGACTTTAATA 57.873 43.478 0.00 0.00 44.43 0.98
332 342 3.983821 ACGAGGAGGAGGAGACTTTAAT 58.016 45.455 0.00 0.00 44.43 1.40
333 343 3.453059 ACGAGGAGGAGGAGACTTTAA 57.547 47.619 0.00 0.00 44.43 1.52
334 344 3.354467 GAACGAGGAGGAGGAGACTTTA 58.646 50.000 0.00 0.00 44.43 1.85
335 345 2.172679 GAACGAGGAGGAGGAGACTTT 58.827 52.381 0.00 0.00 44.43 2.66
336 346 1.842052 GAACGAGGAGGAGGAGACTT 58.158 55.000 0.00 0.00 44.43 3.01
338 348 1.995646 GCGAACGAGGAGGAGGAGAC 61.996 65.000 0.00 0.00 0.00 3.36
339 349 1.749638 GCGAACGAGGAGGAGGAGA 60.750 63.158 0.00 0.00 0.00 3.71
340 350 1.751162 AGCGAACGAGGAGGAGGAG 60.751 63.158 0.00 0.00 0.00 3.69
341 351 2.046864 CAGCGAACGAGGAGGAGGA 61.047 63.158 0.00 0.00 0.00 3.71
342 352 2.492090 CAGCGAACGAGGAGGAGG 59.508 66.667 0.00 0.00 0.00 4.30
343 353 2.202676 GCAGCGAACGAGGAGGAG 60.203 66.667 0.00 0.00 0.00 3.69
344 354 2.676822 AGCAGCGAACGAGGAGGA 60.677 61.111 0.00 0.00 0.00 3.71
345 355 2.507992 CAGCAGCGAACGAGGAGG 60.508 66.667 0.00 0.00 0.00 4.30
346 356 3.184683 GCAGCAGCGAACGAGGAG 61.185 66.667 0.00 0.00 0.00 3.69
347 357 3.300934 ATGCAGCAGCGAACGAGGA 62.301 57.895 0.00 0.00 46.23 3.71
348 358 2.816958 ATGCAGCAGCGAACGAGG 60.817 61.111 0.00 0.00 46.23 4.63
349 359 2.398429 CATGCAGCAGCGAACGAG 59.602 61.111 0.00 0.00 46.23 4.18
350 360 3.792047 GCATGCAGCAGCGAACGA 61.792 61.111 14.21 0.00 46.23 3.85
362 372 4.107051 AAAGCTGACCGCGCATGC 62.107 61.111 7.91 7.91 45.59 4.06
363 373 2.202388 CAAAGCTGACCGCGCATG 60.202 61.111 8.75 0.00 45.59 4.06
364 374 2.669569 ACAAAGCTGACCGCGCAT 60.670 55.556 8.75 0.00 45.59 4.73
365 375 3.648982 CACAAAGCTGACCGCGCA 61.649 61.111 8.75 0.00 45.59 6.09
366 376 2.680913 ATCACAAAGCTGACCGCGC 61.681 57.895 0.00 0.00 45.59 6.86
367 377 1.133253 CATCACAAAGCTGACCGCG 59.867 57.895 0.00 0.00 45.59 6.46
368 378 0.110056 CACATCACAAAGCTGACCGC 60.110 55.000 0.00 0.00 39.57 5.68
369 379 1.069703 CACACATCACAAAGCTGACCG 60.070 52.381 0.00 0.00 0.00 4.79
370 380 2.031682 GTCACACATCACAAAGCTGACC 60.032 50.000 0.00 0.00 0.00 4.02
371 381 2.613595 TGTCACACATCACAAAGCTGAC 59.386 45.455 0.00 0.00 0.00 3.51
372 382 2.613595 GTGTCACACATCACAAAGCTGA 59.386 45.455 2.00 0.00 34.08 4.26
373 383 2.355444 TGTGTCACACATCACAAAGCTG 59.645 45.455 6.50 0.00 39.62 4.24
374 384 2.642427 TGTGTCACACATCACAAAGCT 58.358 42.857 6.50 0.00 39.62 3.74
425 435 2.940410 ACGTTCACGGTCACATCTTTTT 59.060 40.909 4.07 0.00 44.95 1.94
426 436 2.286833 CACGTTCACGGTCACATCTTTT 59.713 45.455 4.07 0.00 44.95 2.27
427 437 1.864711 CACGTTCACGGTCACATCTTT 59.135 47.619 4.07 0.00 44.95 2.52
428 438 1.067974 TCACGTTCACGGTCACATCTT 59.932 47.619 4.07 0.00 44.95 2.40
429 439 0.671796 TCACGTTCACGGTCACATCT 59.328 50.000 4.07 0.00 44.95 2.90
430 440 0.782384 GTCACGTTCACGGTCACATC 59.218 55.000 4.07 0.00 44.95 3.06
431 441 0.937699 CGTCACGTTCACGGTCACAT 60.938 55.000 8.63 0.00 44.95 3.21
432 442 1.586826 CGTCACGTTCACGGTCACA 60.587 57.895 8.63 0.00 44.95 3.58
433 443 1.266786 CTCGTCACGTTCACGGTCAC 61.267 60.000 15.01 0.00 44.95 3.67
434 444 1.009335 CTCGTCACGTTCACGGTCA 60.009 57.895 15.01 0.00 44.95 4.02
435 445 2.362800 GCTCGTCACGTTCACGGTC 61.363 63.158 15.01 5.55 44.95 4.79
436 446 2.354305 GCTCGTCACGTTCACGGT 60.354 61.111 15.01 0.00 44.95 4.83
437 447 3.458579 CGCTCGTCACGTTCACGG 61.459 66.667 15.01 8.35 44.95 4.94
438 448 4.104633 GCGCTCGTCACGTTCACG 62.105 66.667 10.00 10.00 46.33 4.35
439 449 3.028019 TGCGCTCGTCACGTTCAC 61.028 61.111 9.73 0.00 0.00 3.18
440 450 3.028019 GTGCGCTCGTCACGTTCA 61.028 61.111 9.73 0.00 0.00 3.18
441 451 2.708059 GAGTGCGCTCGTCACGTTC 61.708 63.158 12.26 0.00 39.31 3.95
442 452 2.729862 GAGTGCGCTCGTCACGTT 60.730 61.111 12.26 0.00 39.31 3.99
443 453 3.961197 TGAGTGCGCTCGTCACGT 61.961 61.111 21.66 0.00 44.48 4.49
444 454 2.508755 TAGTGAGTGCGCTCGTCACG 62.509 60.000 21.66 0.00 44.41 4.35
445 455 0.179161 ATAGTGAGTGCGCTCGTCAC 60.179 55.000 21.66 22.08 44.48 3.67
446 456 1.375551 TATAGTGAGTGCGCTCGTCA 58.624 50.000 21.66 9.58 44.48 4.35
447 457 2.690173 ATATAGTGAGTGCGCTCGTC 57.310 50.000 21.66 16.56 44.48 4.20
448 458 3.127203 GGATATATAGTGAGTGCGCTCGT 59.873 47.826 21.66 14.05 44.48 4.18
449 459 3.127030 TGGATATATAGTGAGTGCGCTCG 59.873 47.826 21.66 0.00 44.48 5.03
450 460 4.416620 GTGGATATATAGTGAGTGCGCTC 58.583 47.826 20.51 20.51 41.97 5.03
451 461 3.119814 CGTGGATATATAGTGAGTGCGCT 60.120 47.826 9.73 0.00 38.64 5.92
452 462 3.172050 CGTGGATATATAGTGAGTGCGC 58.828 50.000 0.00 0.00 0.00 6.09
453 463 3.119814 AGCGTGGATATATAGTGAGTGCG 60.120 47.826 0.00 0.00 0.00 5.34
454 464 4.442375 AGCGTGGATATATAGTGAGTGC 57.558 45.455 0.00 0.00 0.00 4.40
455 465 6.183360 GGAGTAGCGTGGATATATAGTGAGTG 60.183 46.154 0.00 0.00 0.00 3.51
456 466 5.881443 GGAGTAGCGTGGATATATAGTGAGT 59.119 44.000 0.00 0.00 0.00 3.41
457 467 5.006844 CGGAGTAGCGTGGATATATAGTGAG 59.993 48.000 0.00 0.00 0.00 3.51
458 468 4.874396 CGGAGTAGCGTGGATATATAGTGA 59.126 45.833 0.00 0.00 0.00 3.41
459 469 4.874396 TCGGAGTAGCGTGGATATATAGTG 59.126 45.833 0.00 0.00 0.00 2.74
460 470 4.874966 GTCGGAGTAGCGTGGATATATAGT 59.125 45.833 0.00 0.00 0.00 2.12
461 471 4.025896 CGTCGGAGTAGCGTGGATATATAG 60.026 50.000 0.00 0.00 0.00 1.31
462 472 3.867493 CGTCGGAGTAGCGTGGATATATA 59.133 47.826 0.00 0.00 0.00 0.86
463 473 2.676839 CGTCGGAGTAGCGTGGATATAT 59.323 50.000 0.00 0.00 0.00 0.86
464 474 2.071540 CGTCGGAGTAGCGTGGATATA 58.928 52.381 0.00 0.00 0.00 0.86
465 475 0.873054 CGTCGGAGTAGCGTGGATAT 59.127 55.000 0.00 0.00 0.00 1.63
466 476 1.779025 GCGTCGGAGTAGCGTGGATA 61.779 60.000 0.00 0.00 0.00 2.59
467 477 3.108343 CGTCGGAGTAGCGTGGAT 58.892 61.111 0.00 0.00 0.00 3.41
468 478 3.807538 GCGTCGGAGTAGCGTGGA 61.808 66.667 0.00 0.00 0.00 4.02
477 487 1.331507 CGTACTTACTACGCGTCGGAG 60.332 57.143 18.63 11.14 44.37 4.63
478 488 0.645355 CGTACTTACTACGCGTCGGA 59.355 55.000 18.63 1.83 41.81 4.55
479 489 0.315382 CCGTACTTACTACGCGTCGG 60.315 60.000 18.63 16.81 45.96 4.79
480 490 0.370273 ACCGTACTTACTACGCGTCG 59.630 55.000 18.63 13.46 45.96 5.12
481 491 2.169179 CAACCGTACTTACTACGCGTC 58.831 52.381 18.63 0.00 45.96 5.19
482 492 1.535462 ACAACCGTACTTACTACGCGT 59.465 47.619 19.17 19.17 45.96 6.01
483 493 2.247311 ACAACCGTACTTACTACGCG 57.753 50.000 3.53 3.53 45.96 6.01
484 494 2.091122 GCAACAACCGTACTTACTACGC 59.909 50.000 0.00 0.00 45.96 4.42
485 495 2.339400 CGCAACAACCGTACTTACTACG 59.661 50.000 0.00 0.00 46.74 3.51
486 496 3.120121 CACGCAACAACCGTACTTACTAC 59.880 47.826 0.00 0.00 37.12 2.73
487 497 3.307674 CACGCAACAACCGTACTTACTA 58.692 45.455 0.00 0.00 37.12 1.82
488 498 2.129607 CACGCAACAACCGTACTTACT 58.870 47.619 0.00 0.00 37.12 2.24
489 499 1.397567 GCACGCAACAACCGTACTTAC 60.398 52.381 0.00 0.00 37.12 2.34
490 500 0.860533 GCACGCAACAACCGTACTTA 59.139 50.000 0.00 0.00 37.12 2.24
491 501 0.812412 AGCACGCAACAACCGTACTT 60.812 50.000 0.00 0.00 37.12 2.24
492 502 0.032403 TAGCACGCAACAACCGTACT 59.968 50.000 0.00 0.00 37.12 2.73
493 503 0.437295 CTAGCACGCAACAACCGTAC 59.563 55.000 0.00 0.00 37.12 3.67
494 504 0.032403 ACTAGCACGCAACAACCGTA 59.968 50.000 0.00 0.00 37.12 4.02
495 505 0.032403 TACTAGCACGCAACAACCGT 59.968 50.000 0.00 0.00 39.91 4.83
496 506 1.141645 TTACTAGCACGCAACAACCG 58.858 50.000 0.00 0.00 0.00 4.44
497 507 3.241868 CGTATTACTAGCACGCAACAACC 60.242 47.826 0.00 0.00 0.00 3.77
498 508 3.241868 CCGTATTACTAGCACGCAACAAC 60.242 47.826 0.00 0.00 34.42 3.32
499 509 2.924926 CCGTATTACTAGCACGCAACAA 59.075 45.455 0.00 0.00 34.42 2.83
500 510 2.164017 TCCGTATTACTAGCACGCAACA 59.836 45.455 0.00 0.00 34.42 3.33
501 511 2.533129 GTCCGTATTACTAGCACGCAAC 59.467 50.000 0.00 0.00 34.42 4.17
502 512 2.792196 CGTCCGTATTACTAGCACGCAA 60.792 50.000 0.00 0.00 34.42 4.85
503 513 1.268184 CGTCCGTATTACTAGCACGCA 60.268 52.381 0.00 0.00 34.42 5.24
504 514 1.268234 ACGTCCGTATTACTAGCACGC 60.268 52.381 0.00 0.00 34.42 5.34
505 515 2.369600 CACGTCCGTATTACTAGCACG 58.630 52.381 0.00 0.00 35.50 5.34
506 516 2.114825 GCACGTCCGTATTACTAGCAC 58.885 52.381 0.00 0.00 0.00 4.40
507 517 1.066002 GGCACGTCCGTATTACTAGCA 59.934 52.381 0.00 0.00 0.00 3.49
508 518 1.601412 GGGCACGTCCGTATTACTAGC 60.601 57.143 0.00 0.00 34.94 3.42
509 519 1.677576 TGGGCACGTCCGTATTACTAG 59.322 52.381 0.00 0.00 34.94 2.57
510 520 1.761449 TGGGCACGTCCGTATTACTA 58.239 50.000 0.00 0.00 34.94 1.82
511 521 1.117150 ATGGGCACGTCCGTATTACT 58.883 50.000 0.00 0.00 34.94 2.24
512 522 1.944032 AATGGGCACGTCCGTATTAC 58.056 50.000 0.00 0.00 34.94 1.89
513 523 2.695127 AAATGGGCACGTCCGTATTA 57.305 45.000 0.00 0.00 34.94 0.98
514 524 1.828979 AAAATGGGCACGTCCGTATT 58.171 45.000 0.00 0.00 34.94 1.89
515 525 1.828979 AAAAATGGGCACGTCCGTAT 58.171 45.000 0.00 0.00 34.94 3.06
516 526 3.325902 AAAAATGGGCACGTCCGTA 57.674 47.368 0.00 0.00 34.94 4.02
517 527 4.167597 AAAAATGGGCACGTCCGT 57.832 50.000 0.00 0.00 34.94 4.69
535 545 9.516546 ACAGTAGTAGTAGCACATATATTAGCA 57.483 33.333 8.42 0.00 0.00 3.49
587 597 4.378774 CAACAGTTGCAATTCCAAATGGA 58.621 39.130 13.62 0.00 43.02 3.41
588 598 3.499157 CCAACAGTTGCAATTCCAAATGG 59.501 43.478 13.62 3.00 43.02 3.16
589 599 4.024725 CACCAACAGTTGCAATTCCAAATG 60.025 41.667 7.97 7.97 43.96 2.32
590 600 4.128643 CACCAACAGTTGCAATTCCAAAT 58.871 39.130 7.88 0.00 0.00 2.32
591 601 3.529533 CACCAACAGTTGCAATTCCAAA 58.470 40.909 7.88 0.00 0.00 3.28
592 602 2.158986 CCACCAACAGTTGCAATTCCAA 60.159 45.455 7.88 0.00 0.00 3.53
593 603 1.411977 CCACCAACAGTTGCAATTCCA 59.588 47.619 7.88 0.00 0.00 3.53
594 604 1.270252 CCCACCAACAGTTGCAATTCC 60.270 52.381 7.88 0.00 0.00 3.01
595 605 1.686052 TCCCACCAACAGTTGCAATTC 59.314 47.619 7.88 0.00 0.00 2.17
596 606 1.412343 GTCCCACCAACAGTTGCAATT 59.588 47.619 7.88 0.00 0.00 2.32
597 607 1.039856 GTCCCACCAACAGTTGCAAT 58.960 50.000 7.88 0.00 0.00 3.56
598 608 1.040339 GGTCCCACCAACAGTTGCAA 61.040 55.000 7.88 0.00 38.42 4.08
599 609 1.454847 GGTCCCACCAACAGTTGCA 60.455 57.895 7.88 0.00 38.42 4.08
600 610 1.152756 AGGTCCCACCAACAGTTGC 60.153 57.895 7.88 0.00 41.95 4.17
601 611 0.182537 TCAGGTCCCACCAACAGTTG 59.817 55.000 6.28 6.28 41.95 3.16
602 612 0.182775 GTCAGGTCCCACCAACAGTT 59.817 55.000 0.00 0.00 41.95 3.16
603 613 1.705997 GGTCAGGTCCCACCAACAGT 61.706 60.000 3.08 0.00 41.95 3.55
604 614 1.073199 GGTCAGGTCCCACCAACAG 59.927 63.158 3.08 0.00 41.95 3.16
605 615 0.991355 AAGGTCAGGTCCCACCAACA 60.991 55.000 9.79 0.00 41.95 3.33
606 616 0.185175 AAAGGTCAGGTCCCACCAAC 59.815 55.000 9.79 0.00 41.95 3.77
607 617 0.184933 CAAAGGTCAGGTCCCACCAA 59.815 55.000 9.79 0.00 41.95 3.67
608 618 1.843421 CAAAGGTCAGGTCCCACCA 59.157 57.895 9.79 0.00 41.95 4.17
609 619 1.603739 GCAAAGGTCAGGTCCCACC 60.604 63.158 0.00 0.00 38.99 4.61
610 620 0.606673 GAGCAAAGGTCAGGTCCCAC 60.607 60.000 0.00 0.00 0.00 4.61
611 621 0.768221 AGAGCAAAGGTCAGGTCCCA 60.768 55.000 0.00 0.00 32.93 4.37
612 622 0.035915 GAGAGCAAAGGTCAGGTCCC 60.036 60.000 0.00 0.00 32.93 4.46
613 623 0.980423 AGAGAGCAAAGGTCAGGTCC 59.020 55.000 0.00 0.00 32.93 4.46
614 624 2.416162 CGTAGAGAGCAAAGGTCAGGTC 60.416 54.545 0.00 0.00 31.89 3.85
615 625 1.546476 CGTAGAGAGCAAAGGTCAGGT 59.454 52.381 0.00 0.00 31.89 4.00
616 626 1.819288 TCGTAGAGAGCAAAGGTCAGG 59.181 52.381 0.00 0.00 31.89 3.86
630 640 5.779922 ACTTCTGTGCAATTTACTCGTAGA 58.220 37.500 0.00 0.00 0.00 2.59
631 641 6.034683 GGTACTTCTGTGCAATTTACTCGTAG 59.965 42.308 0.00 0.00 0.00 3.51
924 947 4.535692 AGGCAGAGAGAAGGAAGAAGAAAT 59.464 41.667 0.00 0.00 0.00 2.17
1044 1067 2.420129 GGAGGTTTCGGAGTGCATGTAT 60.420 50.000 0.00 0.00 0.00 2.29
1134 1157 2.447047 ACCACCCAGACAGAAAAATCCT 59.553 45.455 0.00 0.00 0.00 3.24
1149 1172 0.890996 CCTCACAGCAAAGACCACCC 60.891 60.000 0.00 0.00 0.00 4.61
1174 1197 4.321230 GGACGAGGACAAAGCAAATCAAAT 60.321 41.667 0.00 0.00 0.00 2.32
1341 1364 1.489230 ACCTTCTCCCAGTCGTTGTTT 59.511 47.619 0.00 0.00 0.00 2.83
1347 1370 2.417515 GCTAAGAACCTTCTCCCAGTCG 60.418 54.545 0.00 0.00 36.28 4.18
1412 1435 8.267183 ACTATGTGACTTCCAATGAACATATCA 58.733 33.333 0.00 0.00 43.67 2.15
1535 1558 4.826274 AGCCTAAATGCACTCTACTGAA 57.174 40.909 0.00 0.00 0.00 3.02
1968 2111 3.256704 ACCCACAATTCTGACCTTCCTA 58.743 45.455 0.00 0.00 0.00 2.94
2142 2285 5.981088 AACTTGTCATATTGTGCATCCAA 57.019 34.783 0.00 0.00 0.00 3.53
2307 2450 4.708177 TGTTGAAGCTTCTTTAGAGCTGT 58.292 39.130 26.09 0.00 39.06 4.40
2581 2724 1.065636 CCTCTGCCTTCATGAGCTCAA 60.066 52.381 22.50 1.31 0.00 3.02
2760 2904 4.757149 AGATAAACAGCCAGAGTTCACAAC 59.243 41.667 0.00 0.00 0.00 3.32
2908 3057 9.739276 AACCATCATTTTCAGTCTAACATAAGA 57.261 29.630 0.00 0.00 0.00 2.10
3127 4322 4.079558 AGTGAATGCCTGGAATGGACTATT 60.080 41.667 0.00 0.00 0.00 1.73
3238 4434 7.549488 GCAAGTGGTAACTAGATACTTCATGTT 59.451 37.037 9.72 0.00 34.77 2.71
3303 4977 2.375174 ACATTTGTTGCTGGGAGAGGTA 59.625 45.455 0.00 0.00 0.00 3.08
3320 4994 2.254152 TCTACTGCTCCCTCCACATT 57.746 50.000 0.00 0.00 0.00 2.71
3416 5090 1.915769 GAGGTGCTGGGAGAGGTGT 60.916 63.158 0.00 0.00 0.00 4.16
3504 5202 2.366167 CTGGGAGAGGAGCTGGGA 59.634 66.667 0.00 0.00 0.00 4.37
3505 5203 3.478274 GCTGGGAGAGGAGCTGGG 61.478 72.222 0.00 0.00 32.12 4.45
3506 5204 2.365370 AGCTGGGAGAGGAGCTGG 60.365 66.667 0.00 0.00 44.03 4.85
3507 5205 2.433994 GGAGCTGGGAGAGGAGCTG 61.434 68.421 0.00 0.00 45.72 4.24
3509 5207 2.042025 AGGAGCTGGGAGAGGAGC 60.042 66.667 0.00 0.00 35.28 4.70
3510 5208 0.468029 GAGAGGAGCTGGGAGAGGAG 60.468 65.000 0.00 0.00 0.00 3.69
3511 5209 1.618030 GAGAGGAGCTGGGAGAGGA 59.382 63.158 0.00 0.00 0.00 3.71
3512 5210 1.457455 GGAGAGGAGCTGGGAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
3513 5211 0.850100 TAGGAGAGGAGCTGGGAGAG 59.150 60.000 0.00 0.00 0.00 3.20
3514 5212 0.850100 CTAGGAGAGGAGCTGGGAGA 59.150 60.000 0.00 0.00 0.00 3.71
3515 5213 0.827507 GCTAGGAGAGGAGCTGGGAG 60.828 65.000 0.00 0.00 35.73 4.30
3516 5214 1.231641 GCTAGGAGAGGAGCTGGGA 59.768 63.158 0.00 0.00 35.73 4.37
3517 5215 3.869481 GCTAGGAGAGGAGCTGGG 58.131 66.667 0.00 0.00 35.73 4.45
3521 5219 0.478507 AGAGGAGCTAGGAGAGGAGC 59.521 60.000 0.00 0.00 39.08 4.70
3522 5220 1.073923 GGAGAGGAGCTAGGAGAGGAG 59.926 61.905 0.00 0.00 0.00 3.69
3523 5221 1.145571 GGAGAGGAGCTAGGAGAGGA 58.854 60.000 0.00 0.00 0.00 3.71
3524 5222 0.112412 GGGAGAGGAGCTAGGAGAGG 59.888 65.000 0.00 0.00 0.00 3.69
3525 5223 0.850100 TGGGAGAGGAGCTAGGAGAG 59.150 60.000 0.00 0.00 0.00 3.20
3526 5224 0.850100 CTGGGAGAGGAGCTAGGAGA 59.150 60.000 0.00 0.00 0.00 3.71
3527 5225 0.827507 GCTGGGAGAGGAGCTAGGAG 60.828 65.000 0.00 0.00 32.12 3.69
3531 5229 1.231641 GGAGCTGGGAGAGGAGCTA 59.768 63.158 0.00 0.00 45.72 3.32
3576 5361 1.884579 CAACAACCTCTCATGCAGCTT 59.115 47.619 0.00 0.00 0.00 3.74
3629 5417 2.289257 GCAAGCCTCTTGCAAGGAATTT 60.289 45.455 25.73 12.79 44.34 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.