Multiple sequence alignment - TraesCS2A01G415600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G415600 chr2A 100.000 5506 0 0 1 5506 672342418 672347923 0.000000e+00 10168.0
1 TraesCS2A01G415600 chr2D 92.491 2730 97 46 1484 4164 527386805 527389475 0.000000e+00 3807.0
2 TraesCS2A01G415600 chr2D 90.934 1456 73 19 1 1425 527385272 527386699 0.000000e+00 1903.0
3 TraesCS2A01G415600 chr2D 90.316 1012 71 18 4162 5168 527391343 527392332 0.000000e+00 1301.0
4 TraesCS2A01G415600 chr2B 94.651 1832 67 14 1485 3298 624536352 624538170 0.000000e+00 2811.0
5 TraesCS2A01G415600 chr2B 92.344 1881 80 21 3348 5190 624538171 624540025 0.000000e+00 2617.0
6 TraesCS2A01G415600 chr2B 91.339 1524 74 15 1 1486 624534818 624536321 0.000000e+00 2030.0
7 TraesCS2A01G415600 chr2B 85.149 101 6 4 5218 5310 624540110 624540209 1.630000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G415600 chr2A 672342418 672347923 5505 False 10168.000 10168 100.00000 1 5506 1 chr2A.!!$F1 5505
1 TraesCS2A01G415600 chr2D 527385272 527392332 7060 False 2337.000 3807 91.24700 1 5168 3 chr2D.!!$F1 5167
2 TraesCS2A01G415600 chr2B 624534818 624540209 5391 False 1888.325 2811 90.87075 1 5310 4 chr2B.!!$F1 5309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 337 0.108424 AACTCTTGCCGCTCTAGCAG 60.108 55.000 2.44 0.0 42.17 4.24 F
1398 1459 0.036732 ATTCGTCCATGTGTGCCTGT 59.963 50.000 0.00 0.0 0.00 4.00 F
1488 1604 0.931005 GATGGCGACGAGAAATGGAC 59.069 55.000 0.00 0.0 0.00 4.02 F
3119 3257 1.211457 AGCATCTTGCCTCTGTTAGGG 59.789 52.381 0.00 0.0 46.52 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1419 1480 0.039472 ATACCATGCCACAAGCCACA 59.961 50.000 0.00 0.0 42.71 4.17 R
2489 2618 1.032014 ACATCCACCATAAATGCCGC 58.968 50.000 0.00 0.0 0.00 6.53 R
3261 3429 1.140312 ACTGCAGTCCTTTCCCTCAA 58.860 50.000 15.25 0.0 0.00 3.02 R
4612 6684 1.079057 GACTCGAGAACAAGCCCCC 60.079 63.158 21.68 0.0 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.181501 CGAAGCAACTGTGAGGAAACAAA 60.182 43.478 0.00 0.00 0.00 2.83
55 56 3.782889 AGCAACTGTGAGGAAACAAAC 57.217 42.857 0.00 0.00 0.00 2.93
59 72 1.569072 ACTGTGAGGAAACAAACCCCT 59.431 47.619 0.00 0.00 0.00 4.79
95 109 6.869315 TTCGTCAGATAACATCACCAAAAA 57.131 33.333 0.00 0.00 0.00 1.94
149 166 4.463186 GGGAGACGAGTACAATGGCTATAT 59.537 45.833 0.00 0.00 0.00 0.86
204 222 3.995048 AGCTTTCGCTACAAAGTTACTCC 59.005 43.478 0.00 0.00 46.79 3.85
205 223 3.995048 GCTTTCGCTACAAAGTTACTCCT 59.005 43.478 0.00 0.00 36.00 3.69
206 224 5.047519 AGCTTTCGCTACAAAGTTACTCCTA 60.048 40.000 0.00 0.00 46.79 2.94
207 225 5.061933 GCTTTCGCTACAAAGTTACTCCTAC 59.938 44.000 0.00 0.00 36.00 3.18
208 226 5.710513 TTCGCTACAAAGTTACTCCTACA 57.289 39.130 0.00 0.00 0.00 2.74
209 227 5.306532 TCGCTACAAAGTTACTCCTACAG 57.693 43.478 0.00 0.00 0.00 2.74
210 228 5.005740 TCGCTACAAAGTTACTCCTACAGA 58.994 41.667 0.00 0.00 0.00 3.41
278 302 4.329392 TGTGTGATCATGTGAAGCAATCT 58.671 39.130 0.00 0.00 0.00 2.40
279 303 4.763279 TGTGTGATCATGTGAAGCAATCTT 59.237 37.500 0.00 0.00 34.68 2.40
282 306 5.650703 TGTGATCATGTGAAGCAATCTTGAT 59.349 36.000 0.00 0.00 31.48 2.57
283 307 6.183360 TGTGATCATGTGAAGCAATCTTGATC 60.183 38.462 0.00 15.46 38.59 2.92
284 308 5.298527 TGATCATGTGAAGCAATCTTGATCC 59.701 40.000 17.43 8.63 38.03 3.36
311 335 1.003108 GAAACTCTTGCCGCTCTAGC 58.997 55.000 0.00 0.00 37.78 3.42
313 337 0.108424 AACTCTTGCCGCTCTAGCAG 60.108 55.000 2.44 0.00 42.17 4.24
333 371 4.458397 CAGTAGATCAAATCCATGGCAGT 58.542 43.478 6.96 0.00 0.00 4.40
337 375 4.458397 AGATCAAATCCATGGCAGTACTG 58.542 43.478 18.93 18.93 0.00 2.74
444 482 2.820197 AGATACAGAGAACACAGACGCA 59.180 45.455 0.00 0.00 0.00 5.24
742 782 0.621280 TCCACCCAGCTCATCCATCA 60.621 55.000 0.00 0.00 0.00 3.07
743 783 0.465097 CCACCCAGCTCATCCATCAC 60.465 60.000 0.00 0.00 0.00 3.06
744 784 0.465097 CACCCAGCTCATCCATCACC 60.465 60.000 0.00 0.00 0.00 4.02
745 785 1.227764 CCCAGCTCATCCATCACCG 60.228 63.158 0.00 0.00 0.00 4.94
746 786 1.890979 CCAGCTCATCCATCACCGC 60.891 63.158 0.00 0.00 0.00 5.68
747 787 1.890979 CAGCTCATCCATCACCGCC 60.891 63.158 0.00 0.00 0.00 6.13
792 838 4.394712 GGGGGACACCACAGCTCG 62.395 72.222 0.00 0.00 41.08 5.03
831 877 2.095314 TGCACACACTGAAACACACAAG 60.095 45.455 0.00 0.00 0.00 3.16
843 889 1.227556 ACACAAGGCTCACCGACAC 60.228 57.895 0.00 0.00 42.76 3.67
850 896 3.612681 CTCACCGACACGTGGGGT 61.613 66.667 23.13 23.13 34.36 4.95
857 903 4.265056 ACACGTGGGGTCCTTGGC 62.265 66.667 21.57 0.00 0.00 4.52
884 930 1.066929 TGTCATGTCCATCCACTGACG 60.067 52.381 0.00 0.00 39.20 4.35
936 985 0.976590 AACGGGGTAGGCTCTTCTCC 60.977 60.000 0.00 0.00 0.00 3.71
974 1026 0.331278 CCAGTAGTGCCATTCCCCAA 59.669 55.000 0.00 0.00 0.00 4.12
978 1030 1.064017 GTAGTGCCATTCCCCAATCCA 60.064 52.381 0.00 0.00 0.00 3.41
1097 1158 2.032894 CCGATCCGATCCGATTTTTGTG 60.033 50.000 2.69 0.00 0.00 3.33
1142 1203 0.807275 TTGATGGAGTCGCTGCGATG 60.807 55.000 28.51 0.00 38.42 3.84
1194 1255 3.330720 CGTGGAGGAAGGGGGCTT 61.331 66.667 0.00 0.00 0.00 4.35
1297 1358 4.479993 GGCTCGGCTGTGGATGCT 62.480 66.667 0.00 0.00 0.00 3.79
1398 1459 0.036732 ATTCGTCCATGTGTGCCTGT 59.963 50.000 0.00 0.00 0.00 4.00
1418 1479 1.306056 ATGGGGATTGGTTGTGGCC 60.306 57.895 0.00 0.00 0.00 5.36
1419 1480 1.814292 ATGGGGATTGGTTGTGGCCT 61.814 55.000 3.32 0.00 0.00 5.19
1420 1481 1.984026 GGGGATTGGTTGTGGCCTG 60.984 63.158 3.32 0.00 0.00 4.85
1421 1482 1.228862 GGGATTGGTTGTGGCCTGT 60.229 57.895 3.32 0.00 0.00 4.00
1422 1483 1.535204 GGGATTGGTTGTGGCCTGTG 61.535 60.000 3.32 0.00 0.00 3.66
1423 1484 1.535204 GGATTGGTTGTGGCCTGTGG 61.535 60.000 3.32 0.00 0.00 4.17
1446 1507 4.735578 GCTTGTGGCATGGTATCATTTCAG 60.736 45.833 0.00 0.00 41.35 3.02
1448 1509 3.947196 TGTGGCATGGTATCATTTCAGTC 59.053 43.478 0.00 0.00 0.00 3.51
1450 1511 4.274459 GTGGCATGGTATCATTTCAGTCTC 59.726 45.833 0.00 0.00 0.00 3.36
1469 1553 4.351054 GTGGGAGCACTGGGGTGG 62.351 72.222 0.00 0.00 43.18 4.61
1480 1564 4.530857 GGGGTGGATGGCGACGAG 62.531 72.222 0.00 0.00 0.00 4.18
1488 1604 0.931005 GATGGCGACGAGAAATGGAC 59.069 55.000 0.00 0.00 0.00 4.02
1537 1659 2.733026 ACCGAAGTTACATTTCGTTCCG 59.267 45.455 6.12 0.00 44.30 4.30
1717 1839 4.142116 CCAGACAGCAAAATGATATGGCAA 60.142 41.667 0.00 0.00 0.00 4.52
1719 1841 4.708421 AGACAGCAAAATGATATGGCAACT 59.292 37.500 0.00 0.00 37.61 3.16
1727 1849 7.279313 GCAAAATGATATGGCAACTCAGAAAAT 59.721 33.333 8.13 0.00 37.61 1.82
1764 1886 9.503427 CTCAAATAGGATTTTATTCGGTGTTTC 57.497 33.333 0.00 0.00 0.00 2.78
1797 1921 3.636153 ATGGTGAGAACCTTAAGCCTC 57.364 47.619 0.00 4.16 0.00 4.70
1838 1962 8.306761 CAAGCCTACTTAAAACAATTCTGGAAT 58.693 33.333 0.00 0.00 33.74 3.01
1883 2007 8.972262 TGTCGATAACATCTATTATCAGAAGC 57.028 34.615 0.00 0.00 40.27 3.86
1902 2027 9.373603 TCAGAAGCGCTATTTTACACTAATTTA 57.626 29.630 12.05 0.00 0.00 1.40
2065 2190 4.589908 CTTGCCCACTCAACCTATTTACT 58.410 43.478 0.00 0.00 0.00 2.24
2169 2295 6.573664 TGCCGCAGATAAATATTAGCAATT 57.426 33.333 0.00 0.00 0.00 2.32
2510 2639 2.819608 GCGGCATTTATGGTGGATGTAT 59.180 45.455 0.00 0.00 0.00 2.29
2512 2641 4.615912 GCGGCATTTATGGTGGATGTATTC 60.616 45.833 0.00 0.00 0.00 1.75
2513 2642 4.761739 CGGCATTTATGGTGGATGTATTCT 59.238 41.667 0.00 0.00 0.00 2.40
2539 2675 4.836125 TGCTTAAGAAAACTGGCAGAAG 57.164 40.909 23.66 13.13 0.00 2.85
2617 2753 1.547372 GCAAAGTTGGTCATGGAGCAT 59.453 47.619 0.00 0.00 39.81 3.79
2846 2982 4.331968 TGTTAAAAGTGCTGTATGGGAGG 58.668 43.478 0.00 0.00 0.00 4.30
2985 3121 2.167075 ACAAGGTACCTAGCGCGTTTAT 59.833 45.455 16.67 0.00 0.00 1.40
3034 3172 6.364706 TGAAACTAAACAGTGTGCTTTTGTTG 59.635 34.615 0.00 0.00 35.39 3.33
3119 3257 1.211457 AGCATCTTGCCTCTGTTAGGG 59.789 52.381 0.00 0.00 46.52 3.53
3250 3418 4.589216 TTTTTGAGGGAAATGACTGCAG 57.411 40.909 13.48 13.48 0.00 4.41
3251 3419 2.957402 TTGAGGGAAATGACTGCAGT 57.043 45.000 21.88 21.88 0.00 4.40
3252 3420 4.365514 TTTGAGGGAAATGACTGCAGTA 57.634 40.909 21.73 8.91 0.00 2.74
3253 3421 4.365514 TTGAGGGAAATGACTGCAGTAA 57.634 40.909 21.73 14.20 0.00 2.24
3254 3422 4.574674 TGAGGGAAATGACTGCAGTAAT 57.425 40.909 21.73 16.28 0.00 1.89
3255 3423 4.922206 TGAGGGAAATGACTGCAGTAATT 58.078 39.130 21.91 21.91 30.44 1.40
3256 3424 4.943705 TGAGGGAAATGACTGCAGTAATTC 59.056 41.667 26.51 23.72 29.00 2.17
3257 3425 5.184892 AGGGAAATGACTGCAGTAATTCT 57.815 39.130 26.51 17.62 29.00 2.40
3258 3426 5.574188 AGGGAAATGACTGCAGTAATTCTT 58.426 37.500 26.51 14.35 29.00 2.52
3259 3427 6.012745 AGGGAAATGACTGCAGTAATTCTTT 58.987 36.000 26.51 14.34 29.00 2.52
3260 3428 6.494835 AGGGAAATGACTGCAGTAATTCTTTT 59.505 34.615 26.51 19.31 29.00 2.27
3261 3429 7.015584 AGGGAAATGACTGCAGTAATTCTTTTT 59.984 33.333 26.51 13.65 29.00 1.94
3292 3460 2.351726 GGACTGCAGTATTTAGTTGGCG 59.648 50.000 21.73 0.00 0.00 5.69
3310 3478 6.641314 AGTTGGCGTTGTATCTTCTATATTCG 59.359 38.462 0.00 0.00 0.00 3.34
3333 3501 6.605995 TCGAACTTCTGTCTGAGGGATAATAA 59.394 38.462 0.00 0.00 0.00 1.40
3442 3610 7.148639 GCGAGTCTTGATGATGTTGTTACTTTA 60.149 37.037 0.00 0.00 0.00 1.85
3486 3654 7.645340 GCTAACAAAATAGATGGTGCATAGTTG 59.355 37.037 0.00 0.00 0.00 3.16
3489 3657 6.835488 ACAAAATAGATGGTGCATAGTTGGAT 59.165 34.615 0.00 0.00 0.00 3.41
3588 3756 9.906660 TTATGACAGACATATTTTTGGTTTGTC 57.093 29.630 0.00 0.00 43.20 3.18
3607 3775 9.369904 GGTTTGTCCAACTTATATTTACGTAGA 57.630 33.333 0.00 0.00 35.46 2.59
3666 3839 8.134202 TCAACTTCTGAAATACTCTGGTATCA 57.866 34.615 0.00 0.00 37.63 2.15
3886 4059 4.694509 GGATCTTCTGCATATGGTGATGAC 59.305 45.833 4.56 0.00 0.00 3.06
3943 4116 1.581934 TTATGATGCGCTTCCTTCCG 58.418 50.000 19.40 0.00 0.00 4.30
4003 4177 5.300792 TGTTCTTCTTTCCCACAAACCATAC 59.699 40.000 0.00 0.00 0.00 2.39
4066 4262 6.293626 GCAAGCTGTTATTTTCTCTGAACTCA 60.294 38.462 0.00 0.00 0.00 3.41
4082 4278 5.316167 TGAACTCACTTTAATCATGCACCT 58.684 37.500 0.00 0.00 0.00 4.00
4083 4279 6.472016 TGAACTCACTTTAATCATGCACCTA 58.528 36.000 0.00 0.00 0.00 3.08
4164 6233 7.013274 ACCATGTCCATATTCTAATTTGGTTCG 59.987 37.037 10.68 0.00 38.28 3.95
4176 6245 3.478857 TTTGGTTCGAAGGCTGAGTAA 57.521 42.857 0.00 0.00 0.00 2.24
4178 6247 3.247006 TGGTTCGAAGGCTGAGTAATC 57.753 47.619 0.00 0.00 0.00 1.75
4244 6316 0.174162 GCAATGGTCCCATGAACTGC 59.826 55.000 0.00 2.41 36.68 4.40
4249 6321 0.392998 GGTCCCATGAACTGCGATGT 60.393 55.000 0.00 0.00 0.00 3.06
4250 6322 1.453155 GTCCCATGAACTGCGATGTT 58.547 50.000 0.00 0.00 0.00 2.71
4251 6323 1.812571 GTCCCATGAACTGCGATGTTT 59.187 47.619 0.00 0.00 0.00 2.83
4289 6361 9.787532 ACATTTATGTGATGTTATTGCAGTTAC 57.212 29.630 0.00 0.00 40.03 2.50
4398 6470 1.598882 TGTTGGTGCTGTATTTGCGA 58.401 45.000 0.00 0.00 0.00 5.10
4521 6593 4.818546 CACCTTAACATAGGCAGATCCTTG 59.181 45.833 0.00 0.00 44.75 3.61
4573 6645 6.472686 AGGTGTATTCCTCTATGTCAAGTC 57.527 41.667 0.00 0.00 31.32 3.01
4607 6679 4.644685 ACTCCCATGGTAATGCAACAATAC 59.355 41.667 11.73 0.00 31.93 1.89
4612 6684 4.998671 TGGTAATGCAACAATACCATGG 57.001 40.909 11.19 11.19 42.71 3.66
4642 6715 6.769134 TGTTCTCGAGTCTTATATTGGACA 57.231 37.500 13.13 0.00 35.18 4.02
4686 6759 9.587772 CTGCCATGTTATATAATGGTAGTAGAC 57.412 37.037 18.22 3.76 46.04 2.59
4697 6770 8.839310 ATAATGGTAGTAGACTCATTGAATGC 57.161 34.615 0.00 0.00 33.57 3.56
4713 6786 4.989044 TGAATGCATGCATTGTAGACTTG 58.011 39.130 42.33 0.00 45.50 3.16
4723 6796 5.700832 TGCATTGTAGACTTGTCGAGAAAAT 59.299 36.000 0.00 0.00 0.00 1.82
4735 6808 3.084039 TCGAGAAAATGCTGGAATTGCT 58.916 40.909 0.00 0.00 0.00 3.91
4736 6809 3.507233 TCGAGAAAATGCTGGAATTGCTT 59.493 39.130 0.00 0.00 0.00 3.91
4739 6812 6.038356 CGAGAAAATGCTGGAATTGCTTATT 58.962 36.000 0.00 0.00 0.00 1.40
4750 6823 7.359514 GCTGGAATTGCTTATTGTCAACTTTTC 60.360 37.037 0.00 0.00 0.00 2.29
4759 6832 7.383300 GCTTATTGTCAACTTTTCTCTTGCAAT 59.617 33.333 0.00 0.00 33.11 3.56
4766 6839 6.260050 TCAACTTTTCTCTTGCAATTACGAGT 59.740 34.615 11.81 4.97 0.00 4.18
4788 6864 7.248743 AGTTTTAATGTACTAGCCAGGTGTA 57.751 36.000 0.00 0.00 0.00 2.90
4803 6879 5.122396 GCCAGGTGTACTTCTTTAAGTCATG 59.878 44.000 0.00 0.00 42.42 3.07
4896 6972 4.074970 GTCAGCTTTGAAGATTCCCAGAA 58.925 43.478 0.00 0.00 0.00 3.02
4921 6997 4.530553 ACCTCCTCCTTTGTTGTTGTTTTT 59.469 37.500 0.00 0.00 0.00 1.94
5004 7089 5.624509 CGAGTTGACACCCATTTCTCTATGA 60.625 44.000 0.00 0.00 0.00 2.15
5006 7091 6.725364 AGTTGACACCCATTTCTCTATGAAT 58.275 36.000 0.00 0.00 34.24 2.57
5114 7199 8.451748 GTTGATTAAGCGAGAAAAAGGTTATCT 58.548 33.333 0.00 0.00 31.59 1.98
5122 7207 7.337942 AGCGAGAAAAAGGTTATCTTTGATGAT 59.662 33.333 0.00 0.00 44.30 2.45
5129 7214 5.118990 AGGTTATCTTTGATGATGGTCGTG 58.881 41.667 0.00 0.00 0.00 4.35
5141 7226 0.882927 TGGTCGTGTTAGGCAGCAAC 60.883 55.000 0.00 0.00 0.00 4.17
5142 7227 0.602905 GGTCGTGTTAGGCAGCAACT 60.603 55.000 0.00 0.00 0.00 3.16
5178 7266 6.169419 TCTCTGAATATGCTTTTGTTGTCG 57.831 37.500 0.00 0.00 0.00 4.35
5190 7278 0.950555 TGTTGTCGAGGATGCTGTGC 60.951 55.000 0.00 0.00 0.00 4.57
5191 7279 0.950555 GTTGTCGAGGATGCTGTGCA 60.951 55.000 0.00 0.00 44.86 4.57
5192 7280 0.950555 TTGTCGAGGATGCTGTGCAC 60.951 55.000 10.75 10.75 43.04 4.57
5193 7281 1.079543 GTCGAGGATGCTGTGCACT 60.080 57.895 19.41 0.00 43.04 4.40
5194 7282 0.173481 GTCGAGGATGCTGTGCACTA 59.827 55.000 19.41 4.90 43.04 2.74
5195 7283 0.894835 TCGAGGATGCTGTGCACTAA 59.105 50.000 19.41 3.65 43.04 2.24
5196 7284 1.275010 TCGAGGATGCTGTGCACTAAA 59.725 47.619 19.41 3.26 43.04 1.85
5197 7285 2.093500 TCGAGGATGCTGTGCACTAAAT 60.093 45.455 19.41 8.37 43.04 1.40
5198 7286 2.679837 CGAGGATGCTGTGCACTAAATT 59.320 45.455 19.41 0.00 43.04 1.82
5199 7287 3.486375 CGAGGATGCTGTGCACTAAATTG 60.486 47.826 19.41 2.63 43.04 2.32
5200 7288 2.165030 AGGATGCTGTGCACTAAATTGC 59.835 45.455 19.41 12.37 43.04 3.56
5213 7301 6.191661 GCACTAAATTGCACCTTTGTTTTTC 58.808 36.000 4.14 0.00 42.49 2.29
5216 7304 1.646189 TTGCACCTTTGTTTTTCGCC 58.354 45.000 0.00 0.00 0.00 5.54
5227 7315 2.218603 GTTTTTCGCCTGAAGACCTCA 58.781 47.619 0.00 0.00 35.06 3.86
5266 7428 0.654683 GCAGGAGATGAATGCGTGTC 59.345 55.000 0.00 0.00 0.00 3.67
5290 7460 1.062525 GGGTCGCGATCATGTTTGC 59.937 57.895 22.78 5.99 0.00 3.68
5306 7476 3.795639 TGTTTGCACGAAATGAATGTGTG 59.204 39.130 0.00 0.00 36.04 3.82
5311 7481 2.406024 CACGAAATGAATGTGTGCAAGC 59.594 45.455 0.00 0.00 0.00 4.01
5312 7482 1.987770 CGAAATGAATGTGTGCAAGCC 59.012 47.619 0.00 0.00 0.00 4.35
5313 7483 2.607526 CGAAATGAATGTGTGCAAGCCA 60.608 45.455 0.00 0.00 0.00 4.75
5314 7484 2.443887 AATGAATGTGTGCAAGCCAC 57.556 45.000 0.00 0.00 44.90 5.01
5315 7485 0.604578 ATGAATGTGTGCAAGCCACC 59.395 50.000 3.73 0.00 44.01 4.61
5316 7486 0.754587 TGAATGTGTGCAAGCCACCA 60.755 50.000 3.73 0.00 44.01 4.17
5317 7487 0.038892 GAATGTGTGCAAGCCACCAG 60.039 55.000 3.73 0.00 44.01 4.00
5318 7488 1.466025 AATGTGTGCAAGCCACCAGG 61.466 55.000 3.73 0.00 44.01 4.45
5319 7489 2.203337 GTGTGCAAGCCACCAGGA 60.203 61.111 0.00 0.00 44.01 3.86
5320 7490 2.203337 TGTGCAAGCCACCAGGAC 60.203 61.111 0.00 0.00 44.01 3.85
5321 7491 2.203337 GTGCAAGCCACCAGGACA 60.203 61.111 0.00 0.00 38.55 4.02
5322 7492 2.113774 TGCAAGCCACCAGGACAG 59.886 61.111 0.00 0.00 36.89 3.51
5323 7493 2.674380 GCAAGCCACCAGGACAGG 60.674 66.667 0.00 0.00 36.89 4.00
5324 7494 2.034687 CAAGCCACCAGGACAGGG 59.965 66.667 0.00 0.00 36.89 4.45
5325 7495 2.121963 AAGCCACCAGGACAGGGA 60.122 61.111 0.00 0.00 36.89 4.20
5326 7496 1.774217 AAGCCACCAGGACAGGGAA 60.774 57.895 0.00 0.00 36.89 3.97
5327 7497 1.783250 AAGCCACCAGGACAGGGAAG 61.783 60.000 0.00 0.00 36.89 3.46
5328 7498 2.224159 GCCACCAGGACAGGGAAGA 61.224 63.158 0.00 0.00 36.89 2.87
5329 7499 1.779061 GCCACCAGGACAGGGAAGAA 61.779 60.000 0.00 0.00 36.89 2.52
5330 7500 0.771127 CCACCAGGACAGGGAAGAAA 59.229 55.000 0.00 0.00 36.89 2.52
5331 7501 1.545651 CCACCAGGACAGGGAAGAAAC 60.546 57.143 0.00 0.00 36.89 2.78
5332 7502 1.421646 CACCAGGACAGGGAAGAAACT 59.578 52.381 0.00 0.00 0.00 2.66
5333 7503 2.136026 ACCAGGACAGGGAAGAAACTT 58.864 47.619 0.00 0.00 0.00 2.66
5334 7504 2.158608 ACCAGGACAGGGAAGAAACTTG 60.159 50.000 0.00 0.00 0.00 3.16
5335 7505 2.508526 CAGGACAGGGAAGAAACTTGG 58.491 52.381 0.00 0.00 0.00 3.61
5336 7506 2.106511 CAGGACAGGGAAGAAACTTGGA 59.893 50.000 0.00 0.00 0.00 3.53
5337 7507 2.989571 AGGACAGGGAAGAAACTTGGAT 59.010 45.455 0.00 0.00 0.00 3.41
5338 7508 4.019321 CAGGACAGGGAAGAAACTTGGATA 60.019 45.833 0.00 0.00 0.00 2.59
5339 7509 4.601857 AGGACAGGGAAGAAACTTGGATAA 59.398 41.667 0.00 0.00 0.00 1.75
5340 7510 5.254032 AGGACAGGGAAGAAACTTGGATAAT 59.746 40.000 0.00 0.00 0.00 1.28
5341 7511 6.447084 AGGACAGGGAAGAAACTTGGATAATA 59.553 38.462 0.00 0.00 0.00 0.98
5342 7512 7.036863 AGGACAGGGAAGAAACTTGGATAATAA 60.037 37.037 0.00 0.00 0.00 1.40
5343 7513 7.614192 GGACAGGGAAGAAACTTGGATAATAAA 59.386 37.037 0.00 0.00 0.00 1.40
5344 7514 8.349568 ACAGGGAAGAAACTTGGATAATAAAC 57.650 34.615 0.00 0.00 0.00 2.01
5345 7515 7.396339 ACAGGGAAGAAACTTGGATAATAAACC 59.604 37.037 0.00 0.00 0.00 3.27
5346 7516 6.895756 AGGGAAGAAACTTGGATAATAAACCC 59.104 38.462 0.00 0.00 0.00 4.11
5347 7517 6.666113 GGGAAGAAACTTGGATAATAAACCCA 59.334 38.462 0.00 0.00 0.00 4.51
5348 7518 7.344612 GGGAAGAAACTTGGATAATAAACCCAT 59.655 37.037 0.00 0.00 0.00 4.00
5349 7519 9.416284 GGAAGAAACTTGGATAATAAACCCATA 57.584 33.333 0.00 0.00 0.00 2.74
5364 7534 6.796785 AAACCCATAAATAAGAGCATTGCT 57.203 33.333 11.79 11.79 43.88 3.91
5365 7535 5.779529 ACCCATAAATAAGAGCATTGCTG 57.220 39.130 17.51 0.00 39.88 4.41
5366 7536 5.203528 ACCCATAAATAAGAGCATTGCTGT 58.796 37.500 17.51 9.62 39.88 4.40
5367 7537 5.658190 ACCCATAAATAAGAGCATTGCTGTT 59.342 36.000 22.65 22.65 44.24 3.16
5368 7538 6.155049 ACCCATAAATAAGAGCATTGCTGTTT 59.845 34.615 23.96 15.93 39.07 2.83
5369 7539 6.698766 CCCATAAATAAGAGCATTGCTGTTTC 59.301 38.462 23.96 6.91 39.07 2.78
5370 7540 7.259882 CCATAAATAAGAGCATTGCTGTTTCA 58.740 34.615 23.96 9.57 39.07 2.69
5371 7541 7.221452 CCATAAATAAGAGCATTGCTGTTTCAC 59.779 37.037 23.96 5.58 39.07 3.18
5372 7542 5.972107 AATAAGAGCATTGCTGTTTCACT 57.028 34.783 23.96 7.81 39.07 3.41
5373 7543 7.452880 AAATAAGAGCATTGCTGTTTCACTA 57.547 32.000 23.96 8.19 39.07 2.74
5374 7544 4.756084 AAGAGCATTGCTGTTTCACTAC 57.244 40.909 17.51 0.00 39.07 2.73
5375 7545 3.743521 AGAGCATTGCTGTTTCACTACA 58.256 40.909 17.51 0.00 39.88 2.74
5376 7546 4.330250 AGAGCATTGCTGTTTCACTACAT 58.670 39.130 17.51 0.00 39.88 2.29
5377 7547 4.155462 AGAGCATTGCTGTTTCACTACATG 59.845 41.667 17.51 0.00 39.88 3.21
5378 7548 2.919229 GCATTGCTGTTTCACTACATGC 59.081 45.455 0.16 0.00 0.00 4.06
5379 7549 3.612241 GCATTGCTGTTTCACTACATGCA 60.612 43.478 0.16 0.00 33.00 3.96
5380 7550 4.740268 CATTGCTGTTTCACTACATGCAT 58.260 39.130 0.00 0.00 34.53 3.96
5381 7551 4.852134 TTGCTGTTTCACTACATGCATT 57.148 36.364 0.00 0.00 34.53 3.56
5382 7552 4.852134 TGCTGTTTCACTACATGCATTT 57.148 36.364 0.00 0.00 31.75 2.32
5383 7553 5.199024 TGCTGTTTCACTACATGCATTTT 57.801 34.783 0.00 0.00 31.75 1.82
5384 7554 4.983538 TGCTGTTTCACTACATGCATTTTG 59.016 37.500 0.00 0.00 31.75 2.44
5385 7555 4.984161 GCTGTTTCACTACATGCATTTTGT 59.016 37.500 0.00 0.00 0.00 2.83
5386 7556 5.463061 GCTGTTTCACTACATGCATTTTGTT 59.537 36.000 0.00 0.00 0.00 2.83
5387 7557 6.640499 GCTGTTTCACTACATGCATTTTGTTA 59.360 34.615 0.00 0.00 0.00 2.41
5388 7558 7.148918 GCTGTTTCACTACATGCATTTTGTTAG 60.149 37.037 0.00 0.00 0.00 2.34
5389 7559 7.935520 TGTTTCACTACATGCATTTTGTTAGA 58.064 30.769 0.00 0.00 0.00 2.10
5390 7560 8.409371 TGTTTCACTACATGCATTTTGTTAGAA 58.591 29.630 0.00 0.00 0.00 2.10
5391 7561 9.243637 GTTTCACTACATGCATTTTGTTAGAAA 57.756 29.630 0.00 2.95 0.00 2.52
5392 7562 9.809096 TTTCACTACATGCATTTTGTTAGAAAA 57.191 25.926 0.00 0.00 0.00 2.29
5393 7563 9.979578 TTCACTACATGCATTTTGTTAGAAAAT 57.020 25.926 0.00 0.00 0.00 1.82
5394 7564 9.624697 TCACTACATGCATTTTGTTAGAAAATC 57.375 29.630 0.00 0.00 0.00 2.17
5395 7565 8.577939 CACTACATGCATTTTGTTAGAAAATCG 58.422 33.333 0.00 0.00 0.00 3.34
5396 7566 6.949578 ACATGCATTTTGTTAGAAAATCGG 57.050 33.333 0.00 0.00 0.00 4.18
5397 7567 5.348451 ACATGCATTTTGTTAGAAAATCGGC 59.652 36.000 0.00 0.94 0.00 5.54
5398 7568 5.132897 TGCATTTTGTTAGAAAATCGGCT 57.867 34.783 9.85 0.00 0.00 5.52
5399 7569 5.160641 TGCATTTTGTTAGAAAATCGGCTC 58.839 37.500 9.85 0.00 0.00 4.70
5400 7570 4.562789 GCATTTTGTTAGAAAATCGGCTCC 59.437 41.667 0.00 0.00 0.00 4.70
5401 7571 4.776795 TTTTGTTAGAAAATCGGCTCCC 57.223 40.909 0.00 0.00 0.00 4.30
5402 7572 3.426787 TTGTTAGAAAATCGGCTCCCA 57.573 42.857 0.00 0.00 0.00 4.37
5403 7573 2.985896 TGTTAGAAAATCGGCTCCCAG 58.014 47.619 0.00 0.00 0.00 4.45
5404 7574 2.304761 TGTTAGAAAATCGGCTCCCAGT 59.695 45.455 0.00 0.00 0.00 4.00
5405 7575 3.244770 TGTTAGAAAATCGGCTCCCAGTT 60.245 43.478 0.00 0.00 0.00 3.16
5406 7576 1.826385 AGAAAATCGGCTCCCAGTTG 58.174 50.000 0.00 0.00 0.00 3.16
5407 7577 0.171231 GAAAATCGGCTCCCAGTTGC 59.829 55.000 0.00 0.00 0.00 4.17
5408 7578 0.539438 AAAATCGGCTCCCAGTTGCA 60.539 50.000 0.00 0.00 0.00 4.08
5409 7579 0.323725 AAATCGGCTCCCAGTTGCAT 60.324 50.000 0.00 0.00 0.00 3.96
5410 7580 0.323725 AATCGGCTCCCAGTTGCATT 60.324 50.000 0.00 0.00 0.00 3.56
5411 7581 1.033746 ATCGGCTCCCAGTTGCATTG 61.034 55.000 0.00 0.00 0.00 2.82
5412 7582 1.973281 CGGCTCCCAGTTGCATTGT 60.973 57.895 0.00 0.00 0.00 2.71
5413 7583 1.526575 CGGCTCCCAGTTGCATTGTT 61.527 55.000 0.00 0.00 0.00 2.83
5414 7584 0.681175 GGCTCCCAGTTGCATTGTTT 59.319 50.000 0.00 0.00 0.00 2.83
5415 7585 1.606224 GGCTCCCAGTTGCATTGTTTG 60.606 52.381 0.00 0.00 0.00 2.93
5424 7594 3.495124 GCATTGTTTGCGTGATGGT 57.505 47.368 0.00 0.00 42.54 3.55
5425 7595 1.062258 GCATTGTTTGCGTGATGGTG 58.938 50.000 0.00 0.00 42.54 4.17
5426 7596 1.062258 CATTGTTTGCGTGATGGTGC 58.938 50.000 0.00 0.00 0.00 5.01
5427 7597 0.038343 ATTGTTTGCGTGATGGTGCC 60.038 50.000 0.00 0.00 0.00 5.01
5428 7598 1.106351 TTGTTTGCGTGATGGTGCCT 61.106 50.000 0.00 0.00 0.00 4.75
5429 7599 1.081242 GTTTGCGTGATGGTGCCTG 60.081 57.895 0.00 0.00 0.00 4.85
5430 7600 2.267351 TTTGCGTGATGGTGCCTGG 61.267 57.895 0.00 0.00 0.00 4.45
5436 7606 4.740822 GATGGTGCCTGGCCCGTT 62.741 66.667 17.53 8.48 0.00 4.44
5437 7607 3.334891 ATGGTGCCTGGCCCGTTA 61.335 61.111 17.53 1.88 0.00 3.18
5438 7608 3.638592 ATGGTGCCTGGCCCGTTAC 62.639 63.158 17.53 6.90 0.00 2.50
5466 7636 4.475135 GAGCTTCCGAGGGGCCAC 62.475 72.222 4.39 0.00 0.00 5.01
5477 7647 3.171348 GGGCCACCCACTCTTTCT 58.829 61.111 4.39 0.00 44.65 2.52
5478 7648 1.002011 GGGCCACCCACTCTTTCTC 60.002 63.158 4.39 0.00 44.65 2.87
5479 7649 1.761174 GGCCACCCACTCTTTCTCA 59.239 57.895 0.00 0.00 0.00 3.27
5480 7650 0.322008 GGCCACCCACTCTTTCTCAG 60.322 60.000 0.00 0.00 0.00 3.35
5481 7651 0.322008 GCCACCCACTCTTTCTCAGG 60.322 60.000 0.00 0.00 0.00 3.86
5482 7652 0.326264 CCACCCACTCTTTCTCAGGG 59.674 60.000 0.00 0.00 45.20 4.45
5483 7653 1.352083 CACCCACTCTTTCTCAGGGA 58.648 55.000 2.29 0.00 42.25 4.20
5484 7654 1.699634 CACCCACTCTTTCTCAGGGAA 59.300 52.381 2.29 0.00 42.25 3.97
5485 7655 1.700186 ACCCACTCTTTCTCAGGGAAC 59.300 52.381 2.29 0.00 42.25 3.62
5486 7656 1.699634 CCCACTCTTTCTCAGGGAACA 59.300 52.381 0.00 0.00 42.25 3.18
5487 7657 2.106511 CCCACTCTTTCTCAGGGAACAA 59.893 50.000 0.00 0.00 42.25 2.83
5488 7658 3.142174 CCACTCTTTCTCAGGGAACAAC 58.858 50.000 0.00 0.00 33.13 3.32
5489 7659 3.181450 CCACTCTTTCTCAGGGAACAACT 60.181 47.826 0.00 0.00 33.13 3.16
5490 7660 3.812053 CACTCTTTCTCAGGGAACAACTG 59.188 47.826 0.00 0.00 37.30 3.16
5491 7661 3.181450 ACTCTTTCTCAGGGAACAACTGG 60.181 47.826 0.00 0.00 36.62 4.00
5492 7662 3.045634 TCTTTCTCAGGGAACAACTGGA 58.954 45.455 0.00 0.00 36.62 3.86
5493 7663 3.458118 TCTTTCTCAGGGAACAACTGGAA 59.542 43.478 0.00 0.00 36.62 3.53
5494 7664 4.104738 TCTTTCTCAGGGAACAACTGGAAT 59.895 41.667 0.00 0.00 36.62 3.01
5495 7665 5.309543 TCTTTCTCAGGGAACAACTGGAATA 59.690 40.000 0.00 0.00 36.62 1.75
5496 7666 5.576563 TTCTCAGGGAACAACTGGAATAA 57.423 39.130 0.00 0.00 36.62 1.40
5497 7667 5.779241 TCTCAGGGAACAACTGGAATAAT 57.221 39.130 0.00 0.00 36.62 1.28
5498 7668 5.500234 TCTCAGGGAACAACTGGAATAATG 58.500 41.667 0.00 0.00 36.62 1.90
5499 7669 4.599041 TCAGGGAACAACTGGAATAATGG 58.401 43.478 0.00 0.00 36.62 3.16
5500 7670 4.044065 TCAGGGAACAACTGGAATAATGGT 59.956 41.667 0.00 0.00 36.62 3.55
5501 7671 5.251932 TCAGGGAACAACTGGAATAATGGTA 59.748 40.000 0.00 0.00 36.62 3.25
5502 7672 5.357032 CAGGGAACAACTGGAATAATGGTAC 59.643 44.000 0.00 0.00 32.38 3.34
5503 7673 5.253096 AGGGAACAACTGGAATAATGGTACT 59.747 40.000 0.00 0.00 0.00 2.73
5504 7674 5.357032 GGGAACAACTGGAATAATGGTACTG 59.643 44.000 0.00 0.00 0.00 2.74
5505 7675 5.944007 GGAACAACTGGAATAATGGTACTGT 59.056 40.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.135915 AGTTGCTTCGCGAGATCAGAT 59.864 47.619 9.59 0.00 41.60 2.90
54 55 1.789576 AATGTCAGCCGGAAAGGGGT 61.790 55.000 5.05 0.00 41.48 4.95
55 56 1.000896 AATGTCAGCCGGAAAGGGG 60.001 57.895 5.05 0.00 41.48 4.79
59 72 2.835605 GACGAATGTCAGCCGGAAA 58.164 52.632 5.05 0.00 44.82 3.13
121 138 3.133003 CCATTGTACTCGTCTCCCAGATT 59.867 47.826 0.00 0.00 0.00 2.40
149 166 3.524095 TTTTGATCCTGCCTTCTGGAA 57.476 42.857 0.00 0.00 42.50 3.53
202 220 7.617329 TCTGTACTGTACTACTACTCTGTAGGA 59.383 40.741 17.98 0.11 42.92 2.94
203 221 7.780064 TCTGTACTGTACTACTACTCTGTAGG 58.220 42.308 17.98 0.00 42.92 3.18
204 222 9.251792 CATCTGTACTGTACTACTACTCTGTAG 57.748 40.741 17.98 3.49 43.88 2.74
205 223 8.756927 ACATCTGTACTGTACTACTACTCTGTA 58.243 37.037 17.98 0.00 0.00 2.74
206 224 7.549842 CACATCTGTACTGTACTACTACTCTGT 59.450 40.741 17.98 8.05 0.00 3.41
207 225 7.764901 TCACATCTGTACTGTACTACTACTCTG 59.235 40.741 17.98 7.55 0.00 3.35
208 226 7.849160 TCACATCTGTACTGTACTACTACTCT 58.151 38.462 17.98 0.00 0.00 3.24
209 227 8.665643 ATCACATCTGTACTGTACTACTACTC 57.334 38.462 17.98 0.00 0.00 2.59
240 264 3.833650 TCACACATTTGGGAGATGCAAAT 59.166 39.130 0.00 0.00 29.10 2.32
282 306 2.553028 GGCAAGAGTTTCCATGTGAGGA 60.553 50.000 0.00 0.00 35.41 3.71
283 307 1.815003 GGCAAGAGTTTCCATGTGAGG 59.185 52.381 0.00 0.00 0.00 3.86
284 308 1.466167 CGGCAAGAGTTTCCATGTGAG 59.534 52.381 0.00 0.00 0.00 3.51
311 335 4.458397 ACTGCCATGGATTTGATCTACTG 58.542 43.478 18.40 0.00 0.00 2.74
313 337 5.468072 CAGTACTGCCATGGATTTGATCTAC 59.532 44.000 18.40 2.64 0.00 2.59
444 482 0.669077 TGCGGCAAATTTTACACCGT 59.331 45.000 15.89 0.00 45.53 4.83
857 903 1.078214 ATGGACATGACACGGCCTG 60.078 57.895 0.00 0.21 0.00 4.85
884 930 4.572571 TGGCAACGGGTCCCACAC 62.573 66.667 9.12 0.00 42.51 3.82
936 985 0.539051 GTGATCACTGAGAGGTGGGG 59.461 60.000 18.83 0.00 37.75 4.96
974 1026 2.351276 GGCGGTTGAGGTGTGGAT 59.649 61.111 0.00 0.00 0.00 3.41
978 1030 4.643387 GCTGGGCGGTTGAGGTGT 62.643 66.667 0.00 0.00 0.00 4.16
1052 1113 2.357517 GACTCACCACGCACCAGG 60.358 66.667 0.00 0.00 0.00 4.45
1053 1114 2.734723 CGACTCACCACGCACCAG 60.735 66.667 0.00 0.00 0.00 4.00
1060 1121 0.242825 TCGGATCAACGACTCACCAC 59.757 55.000 0.00 0.00 38.06 4.16
1097 1158 1.263217 ACACGAACAAAATCGACCTGC 59.737 47.619 3.47 0.00 45.48 4.85
1153 1214 2.438434 CCATCCACGGCCTGGTTC 60.438 66.667 17.55 0.00 41.52 3.62
1179 1240 3.009115 CGAAGCCCCCTTCCTCCA 61.009 66.667 0.00 0.00 43.66 3.86
1193 1254 1.524165 CCACCACCGGAAACACGAA 60.524 57.895 9.46 0.00 35.47 3.85
1194 1255 2.109387 CCACCACCGGAAACACGA 59.891 61.111 9.46 0.00 35.47 4.35
1282 1343 1.812922 GACAGCATCCACAGCCGAG 60.813 63.158 0.00 0.00 0.00 4.63
1398 1459 0.614415 GCCACAACCAATCCCCATCA 60.614 55.000 0.00 0.00 0.00 3.07
1418 1479 0.608856 TACCATGCCACAAGCCACAG 60.609 55.000 0.00 0.00 42.71 3.66
1419 1480 0.039472 ATACCATGCCACAAGCCACA 59.961 50.000 0.00 0.00 42.71 4.17
1420 1481 0.740737 GATACCATGCCACAAGCCAC 59.259 55.000 0.00 0.00 42.71 5.01
1421 1482 0.330941 TGATACCATGCCACAAGCCA 59.669 50.000 0.00 0.00 42.71 4.75
1422 1483 1.696063 ATGATACCATGCCACAAGCC 58.304 50.000 0.00 0.00 42.71 4.35
1423 1484 3.130869 TGAAATGATACCATGCCACAAGC 59.869 43.478 0.00 0.00 44.14 4.01
1424 1485 4.400251 ACTGAAATGATACCATGCCACAAG 59.600 41.667 0.00 0.00 32.36 3.16
1469 1553 0.931005 GTCCATTTCTCGTCGCCATC 59.069 55.000 0.00 0.00 0.00 3.51
1480 1564 5.448632 CGGTTTTAGCAGGTATGTCCATTTC 60.449 44.000 0.00 0.00 39.02 2.17
1537 1659 8.655935 AAAATATCATATCAATCAACCTCCCC 57.344 34.615 0.00 0.00 0.00 4.81
1663 1785 9.399797 TGCAAGTATGTTCATCAGAGATTTTAT 57.600 29.630 0.00 0.00 0.00 1.40
1664 1786 8.791327 TGCAAGTATGTTCATCAGAGATTTTA 57.209 30.769 0.00 0.00 0.00 1.52
1665 1787 7.148120 CCTGCAAGTATGTTCATCAGAGATTTT 60.148 37.037 0.00 0.00 0.00 1.82
1666 1788 6.318144 CCTGCAAGTATGTTCATCAGAGATTT 59.682 38.462 0.00 0.00 0.00 2.17
1667 1789 5.821470 CCTGCAAGTATGTTCATCAGAGATT 59.179 40.000 0.00 0.00 0.00 2.40
1797 1921 2.821969 AGGCTTGCAAAATCCAGTAGTG 59.178 45.455 0.00 0.00 0.00 2.74
1862 1986 9.743057 ATAGCGCTTCTGATAATAGATGTTATC 57.257 33.333 18.68 3.20 40.09 1.75
2037 2162 0.610232 GTTGAGTGGGCAAGCTGGAT 60.610 55.000 0.00 0.00 0.00 3.41
2038 2163 1.228245 GTTGAGTGGGCAAGCTGGA 60.228 57.895 0.00 0.00 0.00 3.86
2252 2379 6.044287 ACACAATCATGGGGTTCTGCTATATA 59.956 38.462 0.00 0.00 32.76 0.86
2292 2420 7.147811 ACCAAAAATAGGCAAGTTGTGAAACTA 60.148 33.333 4.48 1.11 38.04 2.24
2401 2530 4.113354 GAGCATCTAAGGTAGTTTCACCG 58.887 47.826 0.00 0.00 43.84 4.94
2489 2618 1.032014 ACATCCACCATAAATGCCGC 58.968 50.000 0.00 0.00 0.00 6.53
2539 2675 3.367703 CCACAGCTCCAATTTCCATTGTC 60.368 47.826 0.00 0.00 38.58 3.18
2617 2753 2.463752 ACAAGAAGAGTATGCCCGGTA 58.536 47.619 0.00 0.00 0.00 4.02
2690 2826 1.964223 TGACTCTGGTGAACTCAGGTC 59.036 52.381 0.00 0.00 35.25 3.85
2846 2982 3.198635 TCCTGACAGGTGATTCCTTGATC 59.801 47.826 21.06 0.00 45.67 2.92
3034 3172 3.201290 CAACTGCTACATGACCCATCTC 58.799 50.000 0.00 0.00 0.00 2.75
3258 3426 2.958355 CTGCAGTCCTTTCCCTCAAAAA 59.042 45.455 5.25 0.00 0.00 1.94
3259 3427 2.091885 ACTGCAGTCCTTTCCCTCAAAA 60.092 45.455 15.25 0.00 0.00 2.44
3260 3428 1.494721 ACTGCAGTCCTTTCCCTCAAA 59.505 47.619 15.25 0.00 0.00 2.69
3261 3429 1.140312 ACTGCAGTCCTTTCCCTCAA 58.860 50.000 15.25 0.00 0.00 3.02
3262 3430 2.024176 TACTGCAGTCCTTTCCCTCA 57.976 50.000 25.56 0.00 0.00 3.86
3263 3431 3.636153 AATACTGCAGTCCTTTCCCTC 57.364 47.619 25.56 0.00 0.00 4.30
3264 3432 4.536489 ACTAAATACTGCAGTCCTTTCCCT 59.464 41.667 25.56 5.99 0.00 4.20
3265 3433 4.844884 ACTAAATACTGCAGTCCTTTCCC 58.155 43.478 25.56 0.00 0.00 3.97
3266 3434 5.123979 CCAACTAAATACTGCAGTCCTTTCC 59.876 44.000 25.56 0.00 0.00 3.13
3267 3435 5.392057 GCCAACTAAATACTGCAGTCCTTTC 60.392 44.000 25.56 7.72 0.00 2.62
3268 3436 4.459337 GCCAACTAAATACTGCAGTCCTTT 59.541 41.667 25.56 24.01 0.00 3.11
3269 3437 4.010349 GCCAACTAAATACTGCAGTCCTT 58.990 43.478 25.56 19.32 0.00 3.36
3270 3438 3.610911 GCCAACTAAATACTGCAGTCCT 58.389 45.455 25.56 9.54 0.00 3.85
3271 3439 2.351726 CGCCAACTAAATACTGCAGTCC 59.648 50.000 25.56 0.00 0.00 3.85
3310 3478 7.556844 TGTTATTATCCCTCAGACAGAAGTTC 58.443 38.462 0.00 0.00 0.00 3.01
3333 3501 2.027745 CAGTGGTGAGTTCTATGGCTGT 60.028 50.000 0.00 0.00 0.00 4.40
3442 3610 7.896383 TGTTAGCTTTTATCCAGCCATAAAT 57.104 32.000 0.00 0.00 38.09 1.40
3489 3657 8.994500 TCCCACTATTAATGAGGTTATGTAACA 58.006 33.333 0.00 0.00 37.92 2.41
3607 3775 8.691661 TCAAAAGGAAGCTTCAAGTAGTATTT 57.308 30.769 27.02 12.27 0.00 1.40
3665 3838 9.650539 CCAGAGTATTTCAGGAGTTGATATATG 57.349 37.037 0.00 0.00 34.49 1.78
3666 3839 9.386122 ACCAGAGTATTTCAGGAGTTGATATAT 57.614 33.333 0.00 0.00 36.06 0.86
3673 3846 7.259088 ACAATACCAGAGTATTTCAGGAGTT 57.741 36.000 0.00 0.00 45.03 3.01
3886 4059 1.228124 TCCACAAGCCCCAACTTCG 60.228 57.895 0.00 0.00 0.00 3.79
3916 4089 4.002982 GGAAGCGCATCATAATATCACCA 58.997 43.478 15.31 0.00 0.00 4.17
3974 4147 6.923508 GGTTTGTGGGAAAGAAGAACAATAAG 59.076 38.462 0.00 0.00 31.34 1.73
3977 4150 4.714308 TGGTTTGTGGGAAAGAAGAACAAT 59.286 37.500 0.00 0.00 31.34 2.71
4003 4177 6.873997 AGTTAGGGGTCAAAACAAGAAAAAG 58.126 36.000 0.00 0.00 0.00 2.27
4066 4262 5.140454 GGGGAATAGGTGCATGATTAAAGT 58.860 41.667 0.00 0.00 0.00 2.66
4082 4278 2.661176 AAGACCACAGAGGGGGAATA 57.339 50.000 0.00 0.00 43.89 1.75
4083 4279 2.197465 GTAAGACCACAGAGGGGGAAT 58.803 52.381 0.00 0.00 43.89 3.01
4261 6333 9.709495 AACTGCAATAACATCACATAAATGTTT 57.291 25.926 6.78 0.00 43.08 2.83
4269 6341 6.434028 ACTTGGTAACTGCAATAACATCACAT 59.566 34.615 0.00 0.00 37.61 3.21
4398 6470 4.082026 GGCATGCACTCCTTTCTTGTTAAT 60.082 41.667 21.36 0.00 0.00 1.40
4427 6499 5.236248 ACTGAAAGGTCCATCCATGGCAT 62.236 47.826 6.96 0.00 43.24 4.40
4521 6593 5.666203 GCGAATCAGCCTTTTTGTTTTAAC 58.334 37.500 0.00 0.00 0.00 2.01
4562 6634 5.128499 AGTGAATGGAGAGGACTTGACATAG 59.872 44.000 0.00 0.00 0.00 2.23
4573 6645 1.142465 CCATGGGAGTGAATGGAGAGG 59.858 57.143 2.85 0.00 45.29 3.69
4612 6684 1.079057 GACTCGAGAACAAGCCCCC 60.079 63.158 21.68 0.00 0.00 5.40
4686 6759 5.685954 GTCTACAATGCATGCATTCAATGAG 59.314 40.000 36.90 27.24 43.92 2.90
4694 6767 3.064408 CGACAAGTCTACAATGCATGCAT 59.936 43.478 27.46 27.46 38.46 3.96
4695 6768 2.416202 CGACAAGTCTACAATGCATGCA 59.584 45.455 25.04 25.04 0.00 3.96
4696 6769 2.672874 TCGACAAGTCTACAATGCATGC 59.327 45.455 11.82 11.82 0.00 4.06
4697 6770 4.176271 TCTCGACAAGTCTACAATGCATG 58.824 43.478 0.00 0.00 0.00 4.06
4713 6786 3.119708 AGCAATTCCAGCATTTTCTCGAC 60.120 43.478 0.00 0.00 0.00 4.20
4723 6796 4.523943 AGTTGACAATAAGCAATTCCAGCA 59.476 37.500 0.00 0.00 0.00 4.41
4736 6809 9.677567 GTAATTGCAAGAGAAAAGTTGACAATA 57.322 29.630 4.94 0.00 33.34 1.90
4739 6812 6.037720 TCGTAATTGCAAGAGAAAAGTTGACA 59.962 34.615 4.94 0.00 0.00 3.58
4750 6823 9.262472 GTACATTAAAACTCGTAATTGCAAGAG 57.738 33.333 4.94 8.56 36.83 2.85
4759 6832 7.037438 CCTGGCTAGTACATTAAAACTCGTAA 58.963 38.462 0.00 0.00 0.00 3.18
4766 6839 7.248743 AGTACACCTGGCTAGTACATTAAAA 57.751 36.000 19.97 0.00 40.32 1.52
4803 6879 6.039382 ACCTATTCCACACAAAAACTCTGAAC 59.961 38.462 0.00 0.00 0.00 3.18
4896 6972 3.708451 ACAACAACAAAGGAGGAGGTTT 58.292 40.909 0.00 0.00 0.00 3.27
4921 6997 3.321497 GTGCGGAATAAACCAAATGCAA 58.679 40.909 0.00 0.00 32.29 4.08
4937 7014 1.128692 GATCAAGGAGAAAACGTGCGG 59.871 52.381 0.00 0.00 0.00 5.69
5114 7199 3.006940 GCCTAACACGACCATCATCAAA 58.993 45.455 0.00 0.00 0.00 2.69
5122 7207 0.882927 GTTGCTGCCTAACACGACCA 60.883 55.000 0.00 0.00 0.00 4.02
5173 7261 0.950555 GTGCACAGCATCCTCGACAA 60.951 55.000 13.17 0.00 41.91 3.18
5178 7266 3.733077 GCAATTTAGTGCACAGCATCCTC 60.733 47.826 21.04 0.00 44.29 3.71
5190 7278 6.410038 CGAAAAACAAAGGTGCAATTTAGTG 58.590 36.000 0.00 0.00 0.00 2.74
5191 7279 5.006261 GCGAAAAACAAAGGTGCAATTTAGT 59.994 36.000 0.00 0.00 0.00 2.24
5192 7280 5.431309 GCGAAAAACAAAGGTGCAATTTAG 58.569 37.500 0.00 0.00 0.00 1.85
5193 7281 4.271291 GGCGAAAAACAAAGGTGCAATTTA 59.729 37.500 0.00 0.00 0.00 1.40
5194 7282 3.064682 GGCGAAAAACAAAGGTGCAATTT 59.935 39.130 0.00 0.00 0.00 1.82
5195 7283 2.611751 GGCGAAAAACAAAGGTGCAATT 59.388 40.909 0.00 0.00 0.00 2.32
5196 7284 2.158971 AGGCGAAAAACAAAGGTGCAAT 60.159 40.909 0.00 0.00 0.00 3.56
5197 7285 1.205893 AGGCGAAAAACAAAGGTGCAA 59.794 42.857 0.00 0.00 0.00 4.08
5198 7286 0.820871 AGGCGAAAAACAAAGGTGCA 59.179 45.000 0.00 0.00 0.00 4.57
5199 7287 1.202359 TCAGGCGAAAAACAAAGGTGC 60.202 47.619 0.00 0.00 0.00 5.01
5200 7288 2.861462 TCAGGCGAAAAACAAAGGTG 57.139 45.000 0.00 0.00 0.00 4.00
5201 7289 3.020984 TCTTCAGGCGAAAAACAAAGGT 58.979 40.909 0.00 0.00 0.00 3.50
5202 7290 3.372060 GTCTTCAGGCGAAAAACAAAGG 58.628 45.455 0.00 0.00 0.00 3.11
5203 7291 3.066760 AGGTCTTCAGGCGAAAAACAAAG 59.933 43.478 0.00 0.00 0.00 2.77
5204 7292 3.020984 AGGTCTTCAGGCGAAAAACAAA 58.979 40.909 0.00 0.00 0.00 2.83
5205 7293 2.616842 GAGGTCTTCAGGCGAAAAACAA 59.383 45.455 0.00 0.00 0.00 2.83
5206 7294 2.218603 GAGGTCTTCAGGCGAAAAACA 58.781 47.619 0.00 0.00 0.00 2.83
5207 7295 2.218603 TGAGGTCTTCAGGCGAAAAAC 58.781 47.619 0.00 0.00 0.00 2.43
5227 7315 5.047802 CCTGCAAACAAGATCACAATAACCT 60.048 40.000 0.00 0.00 0.00 3.50
5236 7324 4.290711 TCATCTCCTGCAAACAAGATCA 57.709 40.909 0.00 0.00 0.00 2.92
5276 7446 0.179227 TTCGTGCAAACATGATCGCG 60.179 50.000 0.00 0.00 41.42 5.87
5290 7460 2.406024 GCTTGCACACATTCATTTCGTG 59.594 45.455 0.00 0.00 36.70 4.35
5306 7476 2.674380 CCTGTCCTGGTGGCTTGC 60.674 66.667 0.00 0.00 0.00 4.01
5310 7480 1.779061 TTCTTCCCTGTCCTGGTGGC 61.779 60.000 0.00 0.00 0.00 5.01
5311 7481 0.771127 TTTCTTCCCTGTCCTGGTGG 59.229 55.000 0.00 0.00 0.00 4.61
5312 7482 1.421646 AGTTTCTTCCCTGTCCTGGTG 59.578 52.381 0.00 0.00 0.00 4.17
5313 7483 1.821088 AGTTTCTTCCCTGTCCTGGT 58.179 50.000 0.00 0.00 0.00 4.00
5314 7484 2.508526 CAAGTTTCTTCCCTGTCCTGG 58.491 52.381 0.00 0.00 0.00 4.45
5315 7485 2.106511 TCCAAGTTTCTTCCCTGTCCTG 59.893 50.000 0.00 0.00 0.00 3.86
5316 7486 2.418669 TCCAAGTTTCTTCCCTGTCCT 58.581 47.619 0.00 0.00 0.00 3.85
5317 7487 2.951229 TCCAAGTTTCTTCCCTGTCC 57.049 50.000 0.00 0.00 0.00 4.02
5318 7488 8.459635 GTTTATTATCCAAGTTTCTTCCCTGTC 58.540 37.037 0.00 0.00 0.00 3.51
5319 7489 7.396339 GGTTTATTATCCAAGTTTCTTCCCTGT 59.604 37.037 0.00 0.00 0.00 4.00
5320 7490 7.147897 GGGTTTATTATCCAAGTTTCTTCCCTG 60.148 40.741 0.00 0.00 0.00 4.45
5321 7491 6.895756 GGGTTTATTATCCAAGTTTCTTCCCT 59.104 38.462 0.00 0.00 0.00 4.20
5322 7492 6.666113 TGGGTTTATTATCCAAGTTTCTTCCC 59.334 38.462 0.00 0.00 0.00 3.97
5323 7493 7.712204 TGGGTTTATTATCCAAGTTTCTTCC 57.288 36.000 0.00 0.00 0.00 3.46
5338 7508 8.927411 AGCAATGCTCTTATTTATGGGTTTATT 58.073 29.630 0.00 0.00 30.62 1.40
5339 7509 8.362639 CAGCAATGCTCTTATTTATGGGTTTAT 58.637 33.333 4.03 0.00 36.40 1.40
5340 7510 7.341769 ACAGCAATGCTCTTATTTATGGGTTTA 59.658 33.333 4.03 0.00 36.40 2.01
5341 7511 6.155049 ACAGCAATGCTCTTATTTATGGGTTT 59.845 34.615 4.03 0.00 36.40 3.27
5342 7512 5.658190 ACAGCAATGCTCTTATTTATGGGTT 59.342 36.000 4.03 0.00 36.40 4.11
5343 7513 5.203528 ACAGCAATGCTCTTATTTATGGGT 58.796 37.500 4.03 0.00 36.40 4.51
5344 7514 5.779529 ACAGCAATGCTCTTATTTATGGG 57.220 39.130 4.03 0.00 36.40 4.00
5345 7515 7.221452 GTGAAACAGCAATGCTCTTATTTATGG 59.779 37.037 4.03 0.00 36.40 2.74
5346 7516 7.972277 AGTGAAACAGCAATGCTCTTATTTATG 59.028 33.333 4.03 0.00 41.43 1.90
5347 7517 8.059798 AGTGAAACAGCAATGCTCTTATTTAT 57.940 30.769 4.03 0.00 41.43 1.40
5348 7518 7.452880 AGTGAAACAGCAATGCTCTTATTTA 57.547 32.000 4.03 0.00 41.43 1.40
5349 7519 6.336842 AGTGAAACAGCAATGCTCTTATTT 57.663 33.333 4.03 3.88 41.43 1.40
5350 7520 5.972107 AGTGAAACAGCAATGCTCTTATT 57.028 34.783 4.03 0.00 41.43 1.40
5351 7521 5.939883 TGTAGTGAAACAGCAATGCTCTTAT 59.060 36.000 4.03 0.00 41.43 1.73
5352 7522 5.304778 TGTAGTGAAACAGCAATGCTCTTA 58.695 37.500 4.03 0.00 41.43 2.10
5353 7523 4.136796 TGTAGTGAAACAGCAATGCTCTT 58.863 39.130 4.03 1.15 41.43 2.85
5354 7524 3.743521 TGTAGTGAAACAGCAATGCTCT 58.256 40.909 4.03 0.34 41.43 4.09
5355 7525 4.409570 CATGTAGTGAAACAGCAATGCTC 58.590 43.478 4.03 0.00 41.43 4.26
5356 7526 3.366679 GCATGTAGTGAAACAGCAATGCT 60.367 43.478 0.00 0.00 41.43 3.79
5357 7527 2.919229 GCATGTAGTGAAACAGCAATGC 59.081 45.455 0.00 0.00 41.43 3.56
5358 7528 4.163458 TGCATGTAGTGAAACAGCAATG 57.837 40.909 0.00 0.00 41.43 2.82
5359 7529 5.395682 AATGCATGTAGTGAAACAGCAAT 57.604 34.783 0.00 0.00 41.43 3.56
5360 7530 4.852134 AATGCATGTAGTGAAACAGCAA 57.148 36.364 0.00 0.00 41.43 3.91
5361 7531 4.852134 AAATGCATGTAGTGAAACAGCA 57.148 36.364 0.00 0.00 41.43 4.41
5362 7532 4.984161 ACAAAATGCATGTAGTGAAACAGC 59.016 37.500 0.00 0.00 41.43 4.40
5363 7533 8.075574 TCTAACAAAATGCATGTAGTGAAACAG 58.924 33.333 0.00 0.00 41.43 3.16
5364 7534 7.935520 TCTAACAAAATGCATGTAGTGAAACA 58.064 30.769 0.00 0.00 41.43 2.83
5365 7535 8.795786 TTCTAACAAAATGCATGTAGTGAAAC 57.204 30.769 0.00 0.00 0.00 2.78
5366 7536 9.809096 TTTTCTAACAAAATGCATGTAGTGAAA 57.191 25.926 0.00 5.14 0.00 2.69
5367 7537 9.979578 ATTTTCTAACAAAATGCATGTAGTGAA 57.020 25.926 0.00 0.00 0.00 3.18
5368 7538 9.624697 GATTTTCTAACAAAATGCATGTAGTGA 57.375 29.630 0.00 0.00 30.68 3.41
5369 7539 8.577939 CGATTTTCTAACAAAATGCATGTAGTG 58.422 33.333 0.00 0.00 30.68 2.74
5370 7540 7.754924 CCGATTTTCTAACAAAATGCATGTAGT 59.245 33.333 0.00 0.00 30.68 2.73
5371 7541 7.253750 GCCGATTTTCTAACAAAATGCATGTAG 60.254 37.037 0.00 0.00 30.68 2.74
5372 7542 6.529829 GCCGATTTTCTAACAAAATGCATGTA 59.470 34.615 0.00 0.00 30.68 2.29
5373 7543 5.348451 GCCGATTTTCTAACAAAATGCATGT 59.652 36.000 0.00 0.00 30.68 3.21
5374 7544 5.577945 AGCCGATTTTCTAACAAAATGCATG 59.422 36.000 0.00 0.00 30.68 4.06
5375 7545 5.723295 AGCCGATTTTCTAACAAAATGCAT 58.277 33.333 0.00 0.00 30.68 3.96
5376 7546 5.132897 AGCCGATTTTCTAACAAAATGCA 57.867 34.783 0.00 0.00 30.68 3.96
5377 7547 4.562789 GGAGCCGATTTTCTAACAAAATGC 59.437 41.667 0.00 0.00 30.68 3.56
5378 7548 5.102313 GGGAGCCGATTTTCTAACAAAATG 58.898 41.667 0.00 0.00 30.68 2.32
5379 7549 4.770010 TGGGAGCCGATTTTCTAACAAAAT 59.230 37.500 0.00 0.00 32.98 1.82
5380 7550 4.145807 TGGGAGCCGATTTTCTAACAAAA 58.854 39.130 0.00 0.00 0.00 2.44
5381 7551 3.756434 CTGGGAGCCGATTTTCTAACAAA 59.244 43.478 0.00 0.00 0.00 2.83
5382 7552 3.244770 ACTGGGAGCCGATTTTCTAACAA 60.245 43.478 0.00 0.00 0.00 2.83
5383 7553 2.304761 ACTGGGAGCCGATTTTCTAACA 59.695 45.455 0.00 0.00 0.00 2.41
5384 7554 2.987232 ACTGGGAGCCGATTTTCTAAC 58.013 47.619 0.00 0.00 0.00 2.34
5385 7555 3.343617 CAACTGGGAGCCGATTTTCTAA 58.656 45.455 0.00 0.00 0.00 2.10
5386 7556 2.939640 GCAACTGGGAGCCGATTTTCTA 60.940 50.000 0.00 0.00 0.00 2.10
5387 7557 1.826385 CAACTGGGAGCCGATTTTCT 58.174 50.000 0.00 0.00 0.00 2.52
5388 7558 0.171231 GCAACTGGGAGCCGATTTTC 59.829 55.000 0.00 0.00 0.00 2.29
5389 7559 0.539438 TGCAACTGGGAGCCGATTTT 60.539 50.000 0.00 0.00 0.00 1.82
5390 7560 0.323725 ATGCAACTGGGAGCCGATTT 60.324 50.000 0.00 0.00 0.00 2.17
5391 7561 0.323725 AATGCAACTGGGAGCCGATT 60.324 50.000 0.00 0.00 0.00 3.34
5392 7562 1.033746 CAATGCAACTGGGAGCCGAT 61.034 55.000 0.00 0.00 0.00 4.18
5393 7563 1.675310 CAATGCAACTGGGAGCCGA 60.675 57.895 0.00 0.00 0.00 5.54
5394 7564 1.526575 AACAATGCAACTGGGAGCCG 61.527 55.000 0.00 0.00 0.00 5.52
5395 7565 0.681175 AAACAATGCAACTGGGAGCC 59.319 50.000 0.00 0.00 0.00 4.70
5396 7566 1.787012 CAAACAATGCAACTGGGAGC 58.213 50.000 0.00 0.00 0.00 4.70
5407 7577 1.062258 GCACCATCACGCAAACAATG 58.938 50.000 0.00 0.00 0.00 2.82
5408 7578 0.038343 GGCACCATCACGCAAACAAT 60.038 50.000 0.00 0.00 0.00 2.71
5409 7579 1.106351 AGGCACCATCACGCAAACAA 61.106 50.000 0.00 0.00 0.00 2.83
5410 7580 1.528076 AGGCACCATCACGCAAACA 60.528 52.632 0.00 0.00 0.00 2.83
5411 7581 1.081242 CAGGCACCATCACGCAAAC 60.081 57.895 0.00 0.00 0.00 2.93
5412 7582 2.267351 CCAGGCACCATCACGCAAA 61.267 57.895 0.00 0.00 0.00 3.68
5413 7583 2.672651 CCAGGCACCATCACGCAA 60.673 61.111 0.00 0.00 0.00 4.85
5419 7589 3.338275 TAACGGGCCAGGCACCATC 62.338 63.158 15.19 0.00 0.00 3.51
5420 7590 3.334891 TAACGGGCCAGGCACCAT 61.335 61.111 15.19 1.87 0.00 3.55
5421 7591 4.338710 GTAACGGGCCAGGCACCA 62.339 66.667 15.19 0.00 0.00 4.17
5449 7619 4.475135 GTGGCCCCTCGGAAGCTC 62.475 72.222 0.00 0.00 0.00 4.09
5460 7630 1.002011 GAGAAAGAGTGGGTGGCCC 60.002 63.158 0.00 0.00 45.71 5.80
5461 7631 0.322008 CTGAGAAAGAGTGGGTGGCC 60.322 60.000 0.00 0.00 0.00 5.36
5462 7632 0.322008 CCTGAGAAAGAGTGGGTGGC 60.322 60.000 0.00 0.00 0.00 5.01
5463 7633 0.326264 CCCTGAGAAAGAGTGGGTGG 59.674 60.000 0.00 0.00 33.49 4.61
5464 7634 1.352083 TCCCTGAGAAAGAGTGGGTG 58.648 55.000 0.00 0.00 38.95 4.61
5465 7635 1.700186 GTTCCCTGAGAAAGAGTGGGT 59.300 52.381 0.00 0.00 38.95 4.51
5466 7636 1.699634 TGTTCCCTGAGAAAGAGTGGG 59.300 52.381 0.00 0.00 35.85 4.61
5467 7637 3.142174 GTTGTTCCCTGAGAAAGAGTGG 58.858 50.000 0.00 0.00 35.85 4.00
5468 7638 3.812053 CAGTTGTTCCCTGAGAAAGAGTG 59.188 47.826 0.00 0.00 35.85 3.51
5469 7639 3.181450 CCAGTTGTTCCCTGAGAAAGAGT 60.181 47.826 0.00 0.00 35.85 3.24
5470 7640 3.071602 TCCAGTTGTTCCCTGAGAAAGAG 59.928 47.826 0.00 0.00 35.85 2.85
5471 7641 3.045634 TCCAGTTGTTCCCTGAGAAAGA 58.954 45.455 0.00 0.00 35.85 2.52
5472 7642 3.492102 TCCAGTTGTTCCCTGAGAAAG 57.508 47.619 0.00 0.00 35.85 2.62
5473 7643 3.943671 TTCCAGTTGTTCCCTGAGAAA 57.056 42.857 0.00 0.00 35.85 2.52
5474 7644 5.576563 TTATTCCAGTTGTTCCCTGAGAA 57.423 39.130 0.00 0.00 31.38 2.87
5475 7645 5.500234 CATTATTCCAGTTGTTCCCTGAGA 58.500 41.667 0.00 0.00 31.38 3.27
5476 7646 4.641989 CCATTATTCCAGTTGTTCCCTGAG 59.358 45.833 0.00 0.00 31.38 3.35
5477 7647 4.044065 ACCATTATTCCAGTTGTTCCCTGA 59.956 41.667 0.00 0.00 31.38 3.86
5478 7648 4.344104 ACCATTATTCCAGTTGTTCCCTG 58.656 43.478 0.00 0.00 0.00 4.45
5479 7649 4.675063 ACCATTATTCCAGTTGTTCCCT 57.325 40.909 0.00 0.00 0.00 4.20
5480 7650 5.357032 CAGTACCATTATTCCAGTTGTTCCC 59.643 44.000 0.00 0.00 0.00 3.97
5481 7651 5.944007 ACAGTACCATTATTCCAGTTGTTCC 59.056 40.000 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.