Multiple sequence alignment - TraesCS2A01G413600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G413600 chr2A 100.000 3274 0 0 1 3274 670686996 670683723 0.000000e+00 6047.0
1 TraesCS2A01G413600 chr2D 89.135 1445 82 39 1167 2554 526111769 526113195 0.000000e+00 1729.0
2 TraesCS2A01G413600 chr2D 93.571 700 45 0 2573 3272 35277307 35276608 0.000000e+00 1044.0
3 TraesCS2A01G413600 chr2D 93.123 698 48 0 2575 3272 35308501 35307804 0.000000e+00 1024.0
4 TraesCS2A01G413600 chr2D 92.756 704 49 2 2573 3274 7206835 7207538 0.000000e+00 1016.0
5 TraesCS2A01G413600 chr2D 92.400 500 29 5 668 1163 526111217 526111711 0.000000e+00 704.0
6 TraesCS2A01G413600 chr2D 96.296 54 2 0 532 585 630638491 630638438 4.500000e-14 89.8
7 TraesCS2A01G413600 chr2B 92.201 1077 59 11 1214 2277 621313784 621312720 0.000000e+00 1500.0
8 TraesCS2A01G413600 chr2B 92.127 597 41 4 591 1184 621314437 621313844 0.000000e+00 837.0
9 TraesCS2A01G413600 chr2B 90.361 249 16 5 2337 2581 621312707 621312463 1.470000e-83 320.0
10 TraesCS2A01G413600 chr2B 90.857 175 15 1 316 490 621314622 621314449 1.960000e-57 233.0
11 TraesCS2A01G413600 chr2B 93.617 47 2 1 488 534 443758933 443758978 5.860000e-08 69.4
12 TraesCS2A01G413600 chr1A 93.030 703 48 1 2573 3274 440778554 440779256 0.000000e+00 1026.0
13 TraesCS2A01G413600 chr1A 92.603 703 51 1 2573 3274 440773431 440774133 0.000000e+00 1009.0
14 TraesCS2A01G413600 chr5A 92.898 704 46 3 2573 3274 601253525 601252824 0.000000e+00 1020.0
15 TraesCS2A01G413600 chr5A 95.349 43 1 1 488 530 296305738 296305779 2.110000e-07 67.6
16 TraesCS2A01G413600 chr5A 100.000 28 0 0 503 530 539074056 539074029 6.000000e-03 52.8
17 TraesCS2A01G413600 chr7D 92.745 703 48 3 2573 3274 566877664 566878364 0.000000e+00 1013.0
18 TraesCS2A01G413600 chr7D 91.489 47 3 1 488 534 395220511 395220466 2.730000e-06 63.9
19 TraesCS2A01G413600 chr6B 92.493 706 52 1 2570 3274 132122628 132123333 0.000000e+00 1009.0
20 TraesCS2A01G413600 chr1B 92.593 702 50 1 2573 3274 655130963 655130264 0.000000e+00 1007.0
21 TraesCS2A01G413600 chr4D 85.328 259 35 2 1 256 422553412 422553670 6.970000e-67 265.0
22 TraesCS2A01G413600 chr6D 82.524 206 28 6 1511 1709 324825856 324825652 1.210000e-39 174.0
23 TraesCS2A01G413600 chr6A 82.266 203 31 4 1511 1709 462254659 462254458 1.560000e-38 171.0
24 TraesCS2A01G413600 chr6A 81.553 206 30 6 1511 1709 463165445 463165241 2.610000e-36 163.0
25 TraesCS2A01G413600 chr6A 85.057 87 12 1 488 574 462255906 462255821 1.620000e-13 87.9
26 TraesCS2A01G413600 chr5D 77.419 248 48 7 1 245 421168687 421168929 1.220000e-29 141.0
27 TraesCS2A01G413600 chr7B 100.000 28 0 0 529 556 410851080 410851053 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G413600 chr2A 670683723 670686996 3273 True 6047.0 6047 100.0000 1 3274 1 chr2A.!!$R1 3273
1 TraesCS2A01G413600 chr2D 526111217 526113195 1978 False 1216.5 1729 90.7675 668 2554 2 chr2D.!!$F2 1886
2 TraesCS2A01G413600 chr2D 35276608 35277307 699 True 1044.0 1044 93.5710 2573 3272 1 chr2D.!!$R1 699
3 TraesCS2A01G413600 chr2D 35307804 35308501 697 True 1024.0 1024 93.1230 2575 3272 1 chr2D.!!$R2 697
4 TraesCS2A01G413600 chr2D 7206835 7207538 703 False 1016.0 1016 92.7560 2573 3274 1 chr2D.!!$F1 701
5 TraesCS2A01G413600 chr2B 621312463 621314622 2159 True 722.5 1500 91.3865 316 2581 4 chr2B.!!$R1 2265
6 TraesCS2A01G413600 chr1A 440778554 440779256 702 False 1026.0 1026 93.0300 2573 3274 1 chr1A.!!$F2 701
7 TraesCS2A01G413600 chr1A 440773431 440774133 702 False 1009.0 1009 92.6030 2573 3274 1 chr1A.!!$F1 701
8 TraesCS2A01G413600 chr5A 601252824 601253525 701 True 1020.0 1020 92.8980 2573 3274 1 chr5A.!!$R2 701
9 TraesCS2A01G413600 chr7D 566877664 566878364 700 False 1013.0 1013 92.7450 2573 3274 1 chr7D.!!$F1 701
10 TraesCS2A01G413600 chr6B 132122628 132123333 705 False 1009.0 1009 92.4930 2570 3274 1 chr6B.!!$F1 704
11 TraesCS2A01G413600 chr1B 655130264 655130963 699 True 1007.0 1007 92.5930 2573 3274 1 chr1B.!!$R1 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.025128 GCGTCGCCGAAAAGAAGATC 59.975 55.0 5.75 0.0 35.63 2.75 F
303 304 0.106708 TCAGAACAGAGCAAAGCGGT 59.893 50.0 0.00 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2046 0.813610 AGTTGCACTGCACGCTGTAA 60.814 50.000 2.26 0.0 38.71 2.41 R
2297 2402 3.110358 CGTGCATGCAATCCAATACAAG 58.890 45.455 24.58 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.654414 CATAAGGCCTATCAGTCCGAAC 58.346 50.000 5.16 0.00 0.00 3.95
22 23 0.460311 AAGGCCTATCAGTCCGAACG 59.540 55.000 5.16 0.00 0.00 3.95
23 24 0.395311 AGGCCTATCAGTCCGAACGA 60.395 55.000 1.29 0.00 0.00 3.85
24 25 0.458669 GGCCTATCAGTCCGAACGAA 59.541 55.000 0.00 0.00 0.00 3.85
25 26 1.557651 GCCTATCAGTCCGAACGAAC 58.442 55.000 0.00 0.00 0.00 3.95
26 27 1.823828 CCTATCAGTCCGAACGAACG 58.176 55.000 0.00 0.00 0.00 3.95
33 34 3.342627 CCGAACGAACGGCAAGCA 61.343 61.111 11.22 0.00 46.20 3.91
34 35 2.170985 CGAACGAACGGCAAGCAG 59.829 61.111 0.00 0.00 0.00 4.24
35 36 2.307309 CGAACGAACGGCAAGCAGA 61.307 57.895 0.00 0.00 0.00 4.26
36 37 1.204312 GAACGAACGGCAAGCAGAC 59.796 57.895 0.00 0.00 0.00 3.51
43 44 2.343758 GGCAAGCAGACGAGACCA 59.656 61.111 0.00 0.00 0.00 4.02
44 45 1.078848 GGCAAGCAGACGAGACCAT 60.079 57.895 0.00 0.00 0.00 3.55
45 46 1.086634 GGCAAGCAGACGAGACCATC 61.087 60.000 0.00 0.00 0.00 3.51
54 55 2.107953 GAGACCATCGGCTCAGGC 59.892 66.667 0.00 0.00 37.82 4.85
69 70 2.474712 GGCGTCGCCGAAAAGAAG 59.525 61.111 22.50 0.00 39.62 2.85
70 71 2.025418 GGCGTCGCCGAAAAGAAGA 61.025 57.895 22.50 0.00 39.62 2.87
71 72 1.359459 GGCGTCGCCGAAAAGAAGAT 61.359 55.000 22.50 0.00 39.62 2.40
72 73 0.025128 GCGTCGCCGAAAAGAAGATC 59.975 55.000 5.75 0.00 35.63 2.75
73 74 0.294887 CGTCGCCGAAAAGAAGATCG 59.705 55.000 0.00 0.00 38.74 3.69
74 75 0.025128 GTCGCCGAAAAGAAGATCGC 59.975 55.000 0.00 0.00 37.73 4.58
75 76 1.082117 TCGCCGAAAAGAAGATCGCC 61.082 55.000 0.00 0.00 37.73 5.54
76 77 1.348594 GCCGAAAAGAAGATCGCCG 59.651 57.895 0.00 0.00 37.73 6.46
77 78 1.359459 GCCGAAAAGAAGATCGCCGT 61.359 55.000 0.00 0.00 37.73 5.68
78 79 0.370273 CCGAAAAGAAGATCGCCGTG 59.630 55.000 0.00 0.00 37.73 4.94
79 80 0.370273 CGAAAAGAAGATCGCCGTGG 59.630 55.000 0.00 0.00 31.71 4.94
80 81 1.439679 GAAAAGAAGATCGCCGTGGT 58.560 50.000 0.00 0.00 0.00 4.16
81 82 1.128692 GAAAAGAAGATCGCCGTGGTG 59.871 52.381 0.00 0.00 0.00 4.17
82 83 0.320374 AAAGAAGATCGCCGTGGTGA 59.680 50.000 4.36 4.36 39.09 4.02
83 84 0.108615 AAGAAGATCGCCGTGGTGAG 60.109 55.000 8.30 0.00 38.09 3.51
84 85 0.965866 AGAAGATCGCCGTGGTGAGA 60.966 55.000 8.30 0.00 38.09 3.27
85 86 0.108804 GAAGATCGCCGTGGTGAGAA 60.109 55.000 8.30 0.00 38.09 2.87
86 87 0.320374 AAGATCGCCGTGGTGAGAAA 59.680 50.000 8.30 0.00 38.09 2.52
87 88 0.108615 AGATCGCCGTGGTGAGAAAG 60.109 55.000 8.30 0.00 38.09 2.62
88 89 0.108804 GATCGCCGTGGTGAGAAAGA 60.109 55.000 8.30 0.00 38.09 2.52
89 90 0.108615 ATCGCCGTGGTGAGAAAGAG 60.109 55.000 8.30 0.00 38.09 2.85
90 91 1.738099 CGCCGTGGTGAGAAAGAGG 60.738 63.158 0.00 0.00 0.00 3.69
91 92 2.035442 GCCGTGGTGAGAAAGAGGC 61.035 63.158 0.00 0.00 36.08 4.70
92 93 1.376037 CCGTGGTGAGAAAGAGGCC 60.376 63.158 0.00 0.00 0.00 5.19
93 94 1.738099 CGTGGTGAGAAAGAGGCCG 60.738 63.158 0.00 0.00 0.00 6.13
94 95 1.671742 GTGGTGAGAAAGAGGCCGA 59.328 57.895 0.00 0.00 0.00 5.54
95 96 0.390472 GTGGTGAGAAAGAGGCCGAG 60.390 60.000 0.00 0.00 0.00 4.63
96 97 1.219393 GGTGAGAAAGAGGCCGAGG 59.781 63.158 0.00 0.00 0.00 4.63
97 98 1.448717 GTGAGAAAGAGGCCGAGGC 60.449 63.158 5.37 5.37 41.06 4.70
108 109 1.941812 GCCGAGGCCACATTATTCG 59.058 57.895 5.01 2.91 34.56 3.34
109 110 0.531974 GCCGAGGCCACATTATTCGA 60.532 55.000 5.01 0.00 33.38 3.71
110 111 1.878102 GCCGAGGCCACATTATTCGAT 60.878 52.381 5.01 0.00 33.38 3.59
111 112 1.800586 CCGAGGCCACATTATTCGATG 59.199 52.381 5.01 0.00 33.38 3.84
112 113 1.195448 CGAGGCCACATTATTCGATGC 59.805 52.381 5.01 0.00 33.38 3.91
113 114 2.221169 GAGGCCACATTATTCGATGCA 58.779 47.619 5.01 0.00 0.00 3.96
114 115 2.618241 GAGGCCACATTATTCGATGCAA 59.382 45.455 5.01 0.00 0.00 4.08
115 116 2.358898 AGGCCACATTATTCGATGCAAC 59.641 45.455 5.01 0.00 0.00 4.17
116 117 2.098934 GGCCACATTATTCGATGCAACA 59.901 45.455 0.00 0.00 0.00 3.33
117 118 3.243501 GGCCACATTATTCGATGCAACAT 60.244 43.478 0.00 0.00 0.00 2.71
118 119 3.976942 GCCACATTATTCGATGCAACATC 59.023 43.478 0.00 0.00 0.00 3.06
119 120 4.497842 GCCACATTATTCGATGCAACATCA 60.498 41.667 8.21 0.00 0.00 3.07
120 121 5.580661 CCACATTATTCGATGCAACATCAA 58.419 37.500 8.21 2.62 0.00 2.57
121 122 6.210796 CCACATTATTCGATGCAACATCAAT 58.789 36.000 8.21 8.64 0.00 2.57
122 123 6.361481 CCACATTATTCGATGCAACATCAATC 59.639 38.462 8.21 0.00 0.00 2.67
123 124 7.136772 CACATTATTCGATGCAACATCAATCT 58.863 34.615 8.21 0.00 0.00 2.40
124 125 7.322938 CACATTATTCGATGCAACATCAATCTC 59.677 37.037 8.21 0.00 0.00 2.75
125 126 6.923928 TTATTCGATGCAACATCAATCTCA 57.076 33.333 8.21 0.00 0.00 3.27
126 127 4.604843 TTCGATGCAACATCAATCTCAC 57.395 40.909 8.21 0.00 0.00 3.51
127 128 2.938451 TCGATGCAACATCAATCTCACC 59.062 45.455 8.21 0.00 0.00 4.02
128 129 2.679336 CGATGCAACATCAATCTCACCA 59.321 45.455 8.21 0.00 0.00 4.17
129 130 3.127376 CGATGCAACATCAATCTCACCAA 59.873 43.478 8.21 0.00 0.00 3.67
130 131 4.379708 CGATGCAACATCAATCTCACCAAA 60.380 41.667 8.21 0.00 0.00 3.28
131 132 5.657474 GATGCAACATCAATCTCACCAAAT 58.343 37.500 2.74 0.00 0.00 2.32
132 133 5.471556 TGCAACATCAATCTCACCAAATT 57.528 34.783 0.00 0.00 0.00 1.82
133 134 5.231702 TGCAACATCAATCTCACCAAATTG 58.768 37.500 0.00 0.00 34.80 2.32
134 135 4.628333 GCAACATCAATCTCACCAAATTGG 59.372 41.667 11.02 11.02 45.02 3.16
151 152 8.718047 CCAAATTGGTACTACTAAACGAAAAC 57.282 34.615 3.34 0.00 31.35 2.43
152 153 7.531534 CCAAATTGGTACTACTAAACGAAAACG 59.468 37.037 3.34 0.00 31.35 3.60
153 154 7.945033 AATTGGTACTACTAAACGAAAACGA 57.055 32.000 0.00 0.00 0.00 3.85
154 155 7.945033 ATTGGTACTACTAAACGAAAACGAA 57.055 32.000 0.00 0.00 0.00 3.85
155 156 6.991485 TGGTACTACTAAACGAAAACGAAG 57.009 37.500 0.00 0.00 0.00 3.79
156 157 5.402270 TGGTACTACTAAACGAAAACGAAGC 59.598 40.000 0.00 0.00 0.00 3.86
157 158 4.979564 ACTACTAAACGAAAACGAAGCC 57.020 40.909 0.00 0.00 0.00 4.35
158 159 3.742882 ACTACTAAACGAAAACGAAGCCC 59.257 43.478 0.00 0.00 0.00 5.19
159 160 2.842457 ACTAAACGAAAACGAAGCCCT 58.158 42.857 0.00 0.00 0.00 5.19
160 161 3.993920 ACTAAACGAAAACGAAGCCCTA 58.006 40.909 0.00 0.00 0.00 3.53
161 162 4.379652 ACTAAACGAAAACGAAGCCCTAA 58.620 39.130 0.00 0.00 0.00 2.69
162 163 4.815846 ACTAAACGAAAACGAAGCCCTAAA 59.184 37.500 0.00 0.00 0.00 1.85
163 164 4.841443 AAACGAAAACGAAGCCCTAAAT 57.159 36.364 0.00 0.00 0.00 1.40
164 165 4.414999 AACGAAAACGAAGCCCTAAATC 57.585 40.909 0.00 0.00 0.00 2.17
165 166 3.404899 ACGAAAACGAAGCCCTAAATCA 58.595 40.909 0.00 0.00 0.00 2.57
166 167 3.435671 ACGAAAACGAAGCCCTAAATCAG 59.564 43.478 0.00 0.00 0.00 2.90
167 168 3.435671 CGAAAACGAAGCCCTAAATCAGT 59.564 43.478 0.00 0.00 0.00 3.41
168 169 4.669197 CGAAAACGAAGCCCTAAATCAGTG 60.669 45.833 0.00 0.00 0.00 3.66
169 170 2.403252 ACGAAGCCCTAAATCAGTGG 57.597 50.000 0.00 0.00 0.00 4.00
170 171 1.906574 ACGAAGCCCTAAATCAGTGGA 59.093 47.619 0.00 0.00 0.00 4.02
171 172 2.304761 ACGAAGCCCTAAATCAGTGGAA 59.695 45.455 0.00 0.00 0.00 3.53
172 173 2.678336 CGAAGCCCTAAATCAGTGGAAC 59.322 50.000 0.00 0.00 0.00 3.62
173 174 3.686016 GAAGCCCTAAATCAGTGGAACA 58.314 45.455 0.00 0.00 41.43 3.18
174 175 3.806949 AGCCCTAAATCAGTGGAACAA 57.193 42.857 0.00 0.00 44.16 2.83
175 176 3.421844 AGCCCTAAATCAGTGGAACAAC 58.578 45.455 0.00 0.00 44.16 3.32
176 177 3.153919 GCCCTAAATCAGTGGAACAACA 58.846 45.455 0.00 0.00 44.16 3.33
177 178 3.191371 GCCCTAAATCAGTGGAACAACAG 59.809 47.826 0.00 0.00 44.16 3.16
178 179 3.758554 CCCTAAATCAGTGGAACAACAGG 59.241 47.826 0.00 0.00 44.16 4.00
179 180 4.506625 CCCTAAATCAGTGGAACAACAGGA 60.507 45.833 0.00 0.00 44.16 3.86
180 181 5.070001 CCTAAATCAGTGGAACAACAGGAA 58.930 41.667 0.00 0.00 44.16 3.36
181 182 5.711976 CCTAAATCAGTGGAACAACAGGAAT 59.288 40.000 0.00 0.00 44.16 3.01
182 183 5.458041 AAATCAGTGGAACAACAGGAATG 57.542 39.130 0.00 0.00 44.16 2.67
183 184 2.862541 TCAGTGGAACAACAGGAATGG 58.137 47.619 0.00 0.00 44.16 3.16
184 185 2.441375 TCAGTGGAACAACAGGAATGGA 59.559 45.455 0.00 0.00 44.16 3.41
185 186 3.117701 TCAGTGGAACAACAGGAATGGAA 60.118 43.478 0.00 0.00 44.16 3.53
186 187 3.636300 CAGTGGAACAACAGGAATGGAAA 59.364 43.478 0.00 0.00 44.16 3.13
187 188 3.636764 AGTGGAACAACAGGAATGGAAAC 59.363 43.478 0.00 0.00 44.16 2.78
188 189 3.383185 GTGGAACAACAGGAATGGAAACA 59.617 43.478 0.00 0.00 44.16 2.83
189 190 3.383185 TGGAACAACAGGAATGGAAACAC 59.617 43.478 0.00 0.00 38.76 3.32
190 191 5.712299 TGGAACAACAGGAATGGAAACACC 61.712 45.833 0.00 0.00 38.76 4.16
199 200 1.462928 TGGAAACACCATCCCACCC 59.537 57.895 0.00 0.00 44.64 4.61
200 201 1.304962 GGAAACACCATCCCACCCC 60.305 63.158 0.00 0.00 38.79 4.95
201 202 1.774300 GAAACACCATCCCACCCCT 59.226 57.895 0.00 0.00 0.00 4.79
202 203 0.323451 GAAACACCATCCCACCCCTC 60.323 60.000 0.00 0.00 0.00 4.30
203 204 0.776080 AAACACCATCCCACCCCTCT 60.776 55.000 0.00 0.00 0.00 3.69
204 205 1.208165 AACACCATCCCACCCCTCTC 61.208 60.000 0.00 0.00 0.00 3.20
205 206 2.042930 ACCATCCCACCCCTCTCC 59.957 66.667 0.00 0.00 0.00 3.71
206 207 2.042762 CCATCCCACCCCTCTCCA 59.957 66.667 0.00 0.00 0.00 3.86
207 208 2.074948 CCATCCCACCCCTCTCCAG 61.075 68.421 0.00 0.00 0.00 3.86
208 209 2.367512 ATCCCACCCCTCTCCAGC 60.368 66.667 0.00 0.00 0.00 4.85
209 210 3.273071 ATCCCACCCCTCTCCAGCA 62.273 63.158 0.00 0.00 0.00 4.41
210 211 3.406200 CCCACCCCTCTCCAGCAG 61.406 72.222 0.00 0.00 0.00 4.24
211 212 4.106925 CCACCCCTCTCCAGCAGC 62.107 72.222 0.00 0.00 0.00 5.25
212 213 4.106925 CACCCCTCTCCAGCAGCC 62.107 72.222 0.00 0.00 0.00 4.85
215 216 4.154347 CCCTCTCCAGCAGCCGTC 62.154 72.222 0.00 0.00 0.00 4.79
216 217 4.504916 CCTCTCCAGCAGCCGTCG 62.505 72.222 0.00 0.00 0.00 5.12
217 218 3.443925 CTCTCCAGCAGCCGTCGA 61.444 66.667 0.00 0.00 0.00 4.20
218 219 2.989253 TCTCCAGCAGCCGTCGAA 60.989 61.111 0.00 0.00 0.00 3.71
219 220 2.507992 CTCCAGCAGCCGTCGAAG 60.508 66.667 0.00 0.00 0.00 3.79
220 221 4.742201 TCCAGCAGCCGTCGAAGC 62.742 66.667 0.00 0.43 0.00 3.86
222 223 3.485431 CAGCAGCCGTCGAAGCAG 61.485 66.667 10.96 4.33 0.00 4.24
229 230 4.753877 CGTCGAAGCAGCGGACGA 62.754 66.667 23.70 16.05 37.15 4.20
230 231 2.430244 GTCGAAGCAGCGGACGAA 60.430 61.111 11.74 0.00 36.57 3.85
231 232 2.126463 TCGAAGCAGCGGACGAAG 60.126 61.111 8.64 0.00 0.00 3.79
232 233 2.126463 CGAAGCAGCGGACGAAGA 60.126 61.111 0.00 0.00 0.00 2.87
233 234 2.155194 CGAAGCAGCGGACGAAGAG 61.155 63.158 0.00 0.00 0.00 2.85
234 235 1.807573 GAAGCAGCGGACGAAGAGG 60.808 63.158 0.00 0.00 0.00 3.69
235 236 3.302347 AAGCAGCGGACGAAGAGGG 62.302 63.158 0.00 0.00 0.00 4.30
236 237 4.821589 GCAGCGGACGAAGAGGGG 62.822 72.222 0.00 0.00 0.00 4.79
237 238 3.382832 CAGCGGACGAAGAGGGGT 61.383 66.667 0.00 0.00 0.00 4.95
238 239 3.069318 AGCGGACGAAGAGGGGTC 61.069 66.667 0.00 0.00 0.00 4.46
239 240 4.493747 GCGGACGAAGAGGGGTCG 62.494 72.222 0.00 0.00 44.10 4.79
240 241 3.823330 CGGACGAAGAGGGGTCGG 61.823 72.222 0.00 0.00 42.82 4.79
241 242 3.459063 GGACGAAGAGGGGTCGGG 61.459 72.222 0.00 0.00 42.82 5.14
242 243 2.362120 GACGAAGAGGGGTCGGGA 60.362 66.667 0.00 0.00 42.82 5.14
243 244 1.757340 GACGAAGAGGGGTCGGGAT 60.757 63.158 0.00 0.00 42.82 3.85
244 245 1.736365 GACGAAGAGGGGTCGGGATC 61.736 65.000 0.00 0.00 42.82 3.36
245 246 1.455959 CGAAGAGGGGTCGGGATCT 60.456 63.158 0.00 0.00 34.85 2.75
246 247 1.739338 CGAAGAGGGGTCGGGATCTG 61.739 65.000 0.00 0.00 34.85 2.90
247 248 1.383248 AAGAGGGGTCGGGATCTGG 60.383 63.158 0.00 0.00 0.00 3.86
248 249 3.551407 GAGGGGTCGGGATCTGGC 61.551 72.222 0.00 0.00 0.00 4.85
251 252 3.551407 GGGTCGGGATCTGGCCTC 61.551 72.222 3.32 0.00 0.00 4.70
252 253 2.764128 GGTCGGGATCTGGCCTCA 60.764 66.667 3.32 0.00 0.00 3.86
253 254 2.501610 GTCGGGATCTGGCCTCAC 59.498 66.667 3.32 0.00 0.00 3.51
254 255 2.764128 TCGGGATCTGGCCTCACC 60.764 66.667 3.32 2.07 39.84 4.02
255 256 4.227134 CGGGATCTGGCCTCACCG 62.227 72.222 3.32 7.43 43.94 4.94
256 257 2.764128 GGGATCTGGCCTCACCGA 60.764 66.667 3.32 0.00 43.94 4.69
257 258 2.501610 GGATCTGGCCTCACCGAC 59.498 66.667 3.32 0.00 43.94 4.79
258 259 2.105128 GATCTGGCCTCACCGACG 59.895 66.667 3.32 0.00 43.94 5.12
259 260 3.432051 GATCTGGCCTCACCGACGG 62.432 68.421 13.61 13.61 43.94 4.79
264 265 4.778143 GCCTCACCGACGGGCAAT 62.778 66.667 20.00 0.00 44.69 3.56
265 266 2.897207 CCTCACCGACGGGCAATA 59.103 61.111 20.00 0.00 36.48 1.90
266 267 1.219664 CCTCACCGACGGGCAATAA 59.780 57.895 20.00 0.00 36.48 1.40
267 268 1.087771 CCTCACCGACGGGCAATAAC 61.088 60.000 20.00 0.00 36.48 1.89
268 269 0.108329 CTCACCGACGGGCAATAACT 60.108 55.000 20.00 0.00 36.48 2.24
269 270 0.390603 TCACCGACGGGCAATAACTG 60.391 55.000 20.00 4.61 36.48 3.16
280 281 3.528009 GCAATAACTGCCGCTTCTATC 57.472 47.619 0.00 0.00 46.13 2.08
281 282 2.872245 GCAATAACTGCCGCTTCTATCA 59.128 45.455 0.00 0.00 46.13 2.15
282 283 3.499918 GCAATAACTGCCGCTTCTATCAT 59.500 43.478 0.00 0.00 46.13 2.45
283 284 4.377841 GCAATAACTGCCGCTTCTATCATC 60.378 45.833 0.00 0.00 46.13 2.92
284 285 4.881019 ATAACTGCCGCTTCTATCATCT 57.119 40.909 0.00 0.00 0.00 2.90
285 286 2.810439 ACTGCCGCTTCTATCATCTC 57.190 50.000 0.00 0.00 0.00 2.75
286 287 2.034878 ACTGCCGCTTCTATCATCTCA 58.965 47.619 0.00 0.00 0.00 3.27
287 288 2.035704 ACTGCCGCTTCTATCATCTCAG 59.964 50.000 0.00 0.00 0.00 3.35
288 289 2.295629 CTGCCGCTTCTATCATCTCAGA 59.704 50.000 0.00 0.00 0.00 3.27
289 290 2.695147 TGCCGCTTCTATCATCTCAGAA 59.305 45.455 0.00 0.00 0.00 3.02
290 291 3.056304 GCCGCTTCTATCATCTCAGAAC 58.944 50.000 0.00 0.00 0.00 3.01
291 292 3.491619 GCCGCTTCTATCATCTCAGAACA 60.492 47.826 0.00 0.00 0.00 3.18
292 293 4.297510 CCGCTTCTATCATCTCAGAACAG 58.702 47.826 0.00 0.00 0.00 3.16
293 294 4.037327 CCGCTTCTATCATCTCAGAACAGA 59.963 45.833 0.00 0.00 0.00 3.41
294 295 5.214417 CGCTTCTATCATCTCAGAACAGAG 58.786 45.833 0.00 0.00 36.97 3.35
295 296 4.984161 GCTTCTATCATCTCAGAACAGAGC 59.016 45.833 0.00 0.00 35.59 4.09
296 297 5.451659 GCTTCTATCATCTCAGAACAGAGCA 60.452 44.000 0.00 0.00 35.59 4.26
297 298 6.535963 TTCTATCATCTCAGAACAGAGCAA 57.464 37.500 0.00 0.00 35.59 3.91
298 299 6.535963 TCTATCATCTCAGAACAGAGCAAA 57.464 37.500 0.00 0.00 35.59 3.68
299 300 6.571605 TCTATCATCTCAGAACAGAGCAAAG 58.428 40.000 0.00 0.00 35.59 2.77
300 301 3.332919 TCATCTCAGAACAGAGCAAAGC 58.667 45.455 0.00 0.00 35.59 3.51
301 302 1.788258 TCTCAGAACAGAGCAAAGCG 58.212 50.000 0.00 0.00 35.59 4.68
302 303 0.795085 CTCAGAACAGAGCAAAGCGG 59.205 55.000 0.00 0.00 0.00 5.52
303 304 0.106708 TCAGAACAGAGCAAAGCGGT 59.893 50.000 0.00 0.00 0.00 5.68
304 305 1.343142 TCAGAACAGAGCAAAGCGGTA 59.657 47.619 0.00 0.00 0.00 4.02
305 306 1.461127 CAGAACAGAGCAAAGCGGTAC 59.539 52.381 0.00 0.00 0.00 3.34
306 307 1.344763 AGAACAGAGCAAAGCGGTACT 59.655 47.619 0.00 0.00 0.00 2.73
307 308 2.561419 AGAACAGAGCAAAGCGGTACTA 59.439 45.455 0.00 0.00 0.00 1.82
308 309 2.365408 ACAGAGCAAAGCGGTACTAC 57.635 50.000 0.00 0.00 0.00 2.73
309 310 1.616865 ACAGAGCAAAGCGGTACTACA 59.383 47.619 0.00 0.00 0.00 2.74
310 311 2.036733 ACAGAGCAAAGCGGTACTACAA 59.963 45.455 0.00 0.00 0.00 2.41
311 312 3.064207 CAGAGCAAAGCGGTACTACAAA 58.936 45.455 0.00 0.00 0.00 2.83
312 313 3.684788 CAGAGCAAAGCGGTACTACAAAT 59.315 43.478 0.00 0.00 0.00 2.32
313 314 4.154195 CAGAGCAAAGCGGTACTACAAATT 59.846 41.667 0.00 0.00 0.00 1.82
314 315 4.392138 AGAGCAAAGCGGTACTACAAATTC 59.608 41.667 0.00 0.00 0.00 2.17
315 316 3.439129 AGCAAAGCGGTACTACAAATTCC 59.561 43.478 0.00 0.00 0.00 3.01
316 317 3.427098 GCAAAGCGGTACTACAAATTCCC 60.427 47.826 0.00 0.00 0.00 3.97
317 318 2.704464 AGCGGTACTACAAATTCCCC 57.296 50.000 0.00 0.00 0.00 4.81
318 319 1.134610 AGCGGTACTACAAATTCCCCG 60.135 52.381 0.00 0.00 37.08 5.73
319 320 1.944032 CGGTACTACAAATTCCCCGG 58.056 55.000 0.00 0.00 0.00 5.73
320 321 1.473788 CGGTACTACAAATTCCCCGGG 60.474 57.143 15.80 15.80 0.00 5.73
325 326 2.310647 ACTACAAATTCCCCGGGATTGT 59.689 45.455 26.32 26.22 38.18 2.71
326 327 3.524380 ACTACAAATTCCCCGGGATTGTA 59.476 43.478 26.32 25.95 36.62 2.41
331 332 2.428544 TTCCCCGGGATTGTATTGTG 57.571 50.000 26.32 0.00 0.00 3.33
334 335 2.171027 TCCCCGGGATTGTATTGTGTAC 59.829 50.000 26.32 0.00 0.00 2.90
384 385 8.099537 AGAACACTGTAGATTTGAGATTGACAT 58.900 33.333 0.00 0.00 0.00 3.06
422 423 6.055231 TGAACTTTAAATCACGTTGGAGTG 57.945 37.500 0.00 0.00 43.11 3.51
429 430 1.081906 CACGTTGGAGTGCATGCAC 60.082 57.895 37.87 37.87 46.50 4.57
441 442 1.067669 TGCATGCACGCTAACCAAAAA 59.932 42.857 18.46 0.00 0.00 1.94
454 455 1.413118 CCAAAAACTGGTTCCAGCCT 58.587 50.000 17.55 3.79 40.78 4.58
456 457 3.165071 CCAAAAACTGGTTCCAGCCTAT 58.835 45.455 17.55 1.14 40.78 2.57
483 484 8.560374 GGTTATTTACTCATTTCACTGGCTATC 58.440 37.037 0.00 0.00 0.00 2.08
489 490 9.982651 TTACTCATTTCACTGGCTATCTATTAC 57.017 33.333 0.00 0.00 0.00 1.89
490 491 8.256356 ACTCATTTCACTGGCTATCTATTACT 57.744 34.615 0.00 0.00 0.00 2.24
491 492 8.364142 ACTCATTTCACTGGCTATCTATTACTC 58.636 37.037 0.00 0.00 0.00 2.59
492 493 7.671302 TCATTTCACTGGCTATCTATTACTCC 58.329 38.462 0.00 0.00 0.00 3.85
493 494 6.420913 TTTCACTGGCTATCTATTACTCCC 57.579 41.667 0.00 0.00 0.00 4.30
494 495 5.340891 TCACTGGCTATCTATTACTCCCT 57.659 43.478 0.00 0.00 0.00 4.20
495 496 5.326069 TCACTGGCTATCTATTACTCCCTC 58.674 45.833 0.00 0.00 0.00 4.30
496 497 5.080337 CACTGGCTATCTATTACTCCCTCA 58.920 45.833 0.00 0.00 0.00 3.86
497 498 5.184864 CACTGGCTATCTATTACTCCCTCAG 59.815 48.000 0.00 0.00 0.00 3.35
498 499 5.075205 ACTGGCTATCTATTACTCCCTCAGA 59.925 44.000 0.00 0.00 0.00 3.27
499 500 6.159172 TGGCTATCTATTACTCCCTCAGAT 57.841 41.667 0.00 0.00 0.00 2.90
500 501 6.565974 TGGCTATCTATTACTCCCTCAGATT 58.434 40.000 0.00 0.00 0.00 2.40
501 502 6.665680 TGGCTATCTATTACTCCCTCAGATTC 59.334 42.308 0.00 0.00 0.00 2.52
502 503 6.097696 GGCTATCTATTACTCCCTCAGATTCC 59.902 46.154 0.00 0.00 0.00 3.01
503 504 6.665680 GCTATCTATTACTCCCTCAGATTCCA 59.334 42.308 0.00 0.00 0.00 3.53
504 505 7.179338 GCTATCTATTACTCCCTCAGATTCCAA 59.821 40.741 0.00 0.00 0.00 3.53
505 506 7.937700 ATCTATTACTCCCTCAGATTCCAAA 57.062 36.000 0.00 0.00 0.00 3.28
506 507 7.749377 TCTATTACTCCCTCAGATTCCAAAA 57.251 36.000 0.00 0.00 0.00 2.44
507 508 8.337118 TCTATTACTCCCTCAGATTCCAAAAT 57.663 34.615 0.00 0.00 0.00 1.82
508 509 9.447279 TCTATTACTCCCTCAGATTCCAAAATA 57.553 33.333 0.00 0.00 0.00 1.40
509 510 9.717942 CTATTACTCCCTCAGATTCCAAAATAG 57.282 37.037 0.00 0.00 0.00 1.73
510 511 7.749377 TTACTCCCTCAGATTCCAAAATAGA 57.251 36.000 0.00 0.00 0.00 1.98
511 512 6.838401 ACTCCCTCAGATTCCAAAATAGAT 57.162 37.500 0.00 0.00 0.00 1.98
512 513 6.599445 ACTCCCTCAGATTCCAAAATAGATG 58.401 40.000 0.00 0.00 0.00 2.90
513 514 6.388100 ACTCCCTCAGATTCCAAAATAGATGA 59.612 38.462 0.00 0.00 0.00 2.92
514 515 6.595682 TCCCTCAGATTCCAAAATAGATGAC 58.404 40.000 0.00 0.00 0.00 3.06
515 516 6.388100 TCCCTCAGATTCCAAAATAGATGACT 59.612 38.462 0.00 0.00 0.00 3.41
516 517 6.709846 CCCTCAGATTCCAAAATAGATGACTC 59.290 42.308 0.00 0.00 0.00 3.36
517 518 7.278135 CCTCAGATTCCAAAATAGATGACTCA 58.722 38.462 0.00 0.00 0.00 3.41
518 519 7.772292 CCTCAGATTCCAAAATAGATGACTCAA 59.228 37.037 0.00 0.00 0.00 3.02
519 520 9.170734 CTCAGATTCCAAAATAGATGACTCAAA 57.829 33.333 0.00 0.00 0.00 2.69
520 521 9.690913 TCAGATTCCAAAATAGATGACTCAAAT 57.309 29.630 0.00 0.00 0.00 2.32
577 578 9.768215 AAATTAGGTCTTCTATTTTGGAATGGA 57.232 29.630 0.00 0.00 33.07 3.41
578 579 8.986929 ATTAGGTCTTCTATTTTGGAATGGAG 57.013 34.615 0.00 0.00 34.72 3.86
579 580 5.760131 AGGTCTTCTATTTTGGAATGGAGG 58.240 41.667 0.00 0.00 34.72 4.30
580 581 5.492524 AGGTCTTCTATTTTGGAATGGAGGA 59.507 40.000 0.00 0.00 36.80 3.71
582 583 6.319911 GGTCTTCTATTTTGGAATGGAGGAAG 59.680 42.308 0.00 0.00 39.41 3.46
586 587 7.265599 TCTATTTTGGAATGGAGGAAGTACA 57.734 36.000 0.00 0.00 30.37 2.90
599 600 8.008513 TGGAGGAAGTACATCTAATACAGAAC 57.991 38.462 0.00 0.00 36.67 3.01
600 601 7.618117 TGGAGGAAGTACATCTAATACAGAACA 59.382 37.037 0.00 0.00 36.67 3.18
601 602 8.475639 GGAGGAAGTACATCTAATACAGAACAA 58.524 37.037 0.00 0.00 36.67 2.83
610 619 9.778741 ACATCTAATACAGAACAAAAAGTCAGA 57.221 29.630 0.00 0.00 36.67 3.27
630 639 5.643777 TCAGATTAAGTTTAGTGAGGCTTGC 59.356 40.000 0.00 0.00 0.00 4.01
645 654 2.419667 GCTTGCAAGTGCCAATTTGAT 58.580 42.857 26.55 0.00 41.18 2.57
732 745 3.895998 ACTACTACCGCTAGCTAGGTTT 58.104 45.455 22.10 9.43 41.63 3.27
819 834 0.330941 TAGCCATGTGCCACAATCCA 59.669 50.000 0.00 0.00 42.71 3.41
826 841 1.303236 TGCCACAATCCAACGGAGG 60.303 57.895 0.00 0.00 34.05 4.30
840 855 1.439644 GGAGGCACTGAGATCCGTC 59.560 63.158 0.00 0.00 41.55 4.79
905 920 4.516698 GCTTTGCTGCCTATAAATAGAGCA 59.483 41.667 8.53 8.53 38.01 4.26
915 930 6.477033 GCCTATAAATAGAGCACATCCATACG 59.523 42.308 0.00 0.00 32.05 3.06
943 958 6.061022 ACATAACACACACCATTCCTCATA 57.939 37.500 0.00 0.00 0.00 2.15
944 959 6.115446 ACATAACACACACCATTCCTCATAG 58.885 40.000 0.00 0.00 0.00 2.23
945 960 2.991250 ACACACACCATTCCTCATAGC 58.009 47.619 0.00 0.00 0.00 2.97
946 961 2.305635 ACACACACCATTCCTCATAGCA 59.694 45.455 0.00 0.00 0.00 3.49
947 962 3.244875 ACACACACCATTCCTCATAGCAA 60.245 43.478 0.00 0.00 0.00 3.91
948 963 3.127548 CACACACCATTCCTCATAGCAAC 59.872 47.826 0.00 0.00 0.00 4.17
949 964 3.009473 ACACACCATTCCTCATAGCAACT 59.991 43.478 0.00 0.00 0.00 3.16
950 965 4.012374 CACACCATTCCTCATAGCAACTT 58.988 43.478 0.00 0.00 0.00 2.66
951 966 4.012374 ACACCATTCCTCATAGCAACTTG 58.988 43.478 0.00 0.00 0.00 3.16
952 967 3.019564 ACCATTCCTCATAGCAACTTGC 58.980 45.455 5.55 5.55 45.46 4.01
961 976 4.641777 GCAACTTGCAAGCCTCAC 57.358 55.556 26.27 7.99 44.26 3.51
962 977 2.036236 GCAACTTGCAAGCCTCACT 58.964 52.632 26.27 2.45 44.26 3.41
963 978 1.238439 GCAACTTGCAAGCCTCACTA 58.762 50.000 26.27 0.00 44.26 2.74
964 979 1.608590 GCAACTTGCAAGCCTCACTAA 59.391 47.619 26.27 0.00 44.26 2.24
965 980 2.034558 GCAACTTGCAAGCCTCACTAAA 59.965 45.455 26.27 0.00 44.26 1.85
1146 1161 1.576421 GTATGGCGCTGCTAATGGC 59.424 57.895 7.64 0.00 42.22 4.40
1165 1184 1.598130 GCCGGGAGTGATGGTATGC 60.598 63.158 2.18 0.00 0.00 3.14
1172 1191 4.319177 GGGAGTGATGGTATGCATACTTC 58.681 47.826 30.56 26.07 33.81 3.01
1173 1192 4.319177 GGAGTGATGGTATGCATACTTCC 58.681 47.826 30.56 22.51 33.81 3.46
1184 1203 4.032960 TGCATACTTCCCAAACTGATGT 57.967 40.909 0.00 0.00 0.00 3.06
1185 1204 5.172687 TGCATACTTCCCAAACTGATGTA 57.827 39.130 0.00 0.00 0.00 2.29
1186 1205 5.754782 TGCATACTTCCCAAACTGATGTAT 58.245 37.500 0.00 0.00 34.96 2.29
1195 1265 9.613428 CTTCCCAAACTGATGTATGATAAGTTA 57.387 33.333 0.00 0.00 31.09 2.24
1248 1318 4.522405 AGTCAAGCTAGCATCGATCATAGT 59.478 41.667 18.83 0.00 0.00 2.12
1252 1322 4.804108 AGCTAGCATCGATCATAGTTCAC 58.196 43.478 18.83 0.46 0.00 3.18
1254 1324 3.018598 AGCATCGATCATAGTTCACGG 57.981 47.619 0.00 0.00 0.00 4.94
1271 1350 6.479001 AGTTCACGGTTTAGCATCATATGTAC 59.521 38.462 1.90 0.00 0.00 2.90
1273 1352 4.149922 CACGGTTTAGCATCATATGTACCG 59.850 45.833 17.66 17.66 42.68 4.02
1275 1354 4.748102 CGGTTTAGCATCATATGTACCGTT 59.252 41.667 1.90 0.00 37.80 4.44
1415 1494 1.373570 GATCTTGCTACCAGGTGCAC 58.626 55.000 8.80 8.80 39.05 4.57
1442 1525 3.261897 AGTGTCCCCTATGAAACAGACTG 59.738 47.826 0.00 0.00 0.00 3.51
1452 1536 9.099454 CCCTATGAAACAGACTGAAAACTATAC 57.901 37.037 10.08 0.00 0.00 1.47
1453 1537 9.099454 CCTATGAAACAGACTGAAAACTATACC 57.901 37.037 10.08 0.00 0.00 2.73
1806 1895 4.938832 CCGTTGGAACACACCTAATGATTA 59.061 41.667 0.00 0.00 39.29 1.75
1818 1907 9.173021 CACACCTAATGATTATTACCTTTGTCA 57.827 33.333 0.00 0.00 0.00 3.58
1898 1998 2.200067 GATCGAGCTGTGTCCTTGATG 58.800 52.381 0.00 0.00 34.38 3.07
1899 1999 1.256812 TCGAGCTGTGTCCTTGATGA 58.743 50.000 0.00 0.00 0.00 2.92
1900 2000 1.827344 TCGAGCTGTGTCCTTGATGAT 59.173 47.619 0.00 0.00 0.00 2.45
1909 2009 1.123077 TCCTTGATGATCCTCCGTGG 58.877 55.000 0.00 0.00 37.10 4.94
1912 2012 2.434336 CCTTGATGATCCTCCGTGGTAA 59.566 50.000 0.00 0.00 37.07 2.85
1943 2046 5.895636 TTTTCATTACTCCGCATGTGATT 57.104 34.783 8.11 0.00 0.00 2.57
2087 2190 3.200593 CTCATGCAGAGCGGTGCC 61.201 66.667 10.39 0.00 43.28 5.01
2139 2242 2.047844 GCGCTGTCTGGAAGCTCA 60.048 61.111 0.00 0.00 38.57 4.26
2228 2331 1.450312 CAGCAACGTCATCCCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
2280 2385 4.563061 GGCGGTCAATTACTAATCCGTAT 58.437 43.478 8.45 0.00 40.05 3.06
2282 2387 4.387862 GCGGTCAATTACTAATCCGTATGG 59.612 45.833 0.00 0.00 40.05 2.74
2349 2474 4.353737 CAACATGCATGCAACCTATGTAC 58.646 43.478 26.68 0.00 32.18 2.90
2407 2540 8.035984 AGTGCTACTAGGAAGAACTGAAATAAC 58.964 37.037 7.11 0.00 0.00 1.89
2408 2541 7.009357 GTGCTACTAGGAAGAACTGAAATAACG 59.991 40.741 0.00 0.00 0.00 3.18
2409 2542 6.476053 GCTACTAGGAAGAACTGAAATAACGG 59.524 42.308 0.00 0.00 0.00 4.44
2450 2585 2.203252 AGGCGCTGCATGGGTATG 60.203 61.111 7.64 0.00 37.36 2.39
2452 2587 2.516930 GCGCTGCATGGGTATGGT 60.517 61.111 0.00 0.00 34.79 3.55
2554 2692 7.710907 AGTGCCTAATACGTGCAATATATATGG 59.289 37.037 0.00 0.00 36.65 2.74
2555 2693 7.709182 GTGCCTAATACGTGCAATATATATGGA 59.291 37.037 0.00 0.00 36.65 3.41
2586 2724 1.073763 TGCATGTGTTGGGCTAAGTCT 59.926 47.619 0.00 0.00 0.00 3.24
2640 2778 3.521531 TCAGCCCATAAGTCCAACACATA 59.478 43.478 0.00 0.00 0.00 2.29
2642 2780 5.368230 TCAGCCCATAAGTCCAACACATATA 59.632 40.000 0.00 0.00 0.00 0.86
2664 2802 1.091771 CCGTTGATCCTCGCTGCATT 61.092 55.000 0.00 0.00 0.00 3.56
2677 2815 2.095110 CGCTGCATTCAATGGTTGAGAA 60.095 45.455 0.00 0.00 41.38 2.87
2720 2858 3.200958 AGGAGAAAACCCTAGCCACTA 57.799 47.619 0.00 0.00 30.92 2.74
2732 2871 2.592993 GCCACTACACCCCTGCTGA 61.593 63.158 0.00 0.00 0.00 4.26
2742 2881 2.360350 CCTGCTGATGGCGGTTGT 60.360 61.111 0.00 0.00 45.36 3.32
2805 2948 3.825908 ACCTGAGAGAGAGGAAGAAGT 57.174 47.619 0.00 0.00 34.37 3.01
2882 3025 2.821969 GTGATTGGAGGCTCAAACATGT 59.178 45.455 17.69 0.00 33.27 3.21
2935 3079 7.119699 TCGTTCCTTACTTTGAGTACTTCGATA 59.880 37.037 0.00 0.00 28.93 2.92
2969 3113 1.280457 GAGGATTGGGTCAGTGGAGT 58.720 55.000 0.00 0.00 0.00 3.85
3031 3175 7.045416 TGCAGTTTCAGAACAGAGTAGTTTTA 58.955 34.615 0.00 0.00 38.26 1.52
3032 3176 7.551262 TGCAGTTTCAGAACAGAGTAGTTTTAA 59.449 33.333 0.00 0.00 38.26 1.52
3082 3227 4.265904 TGTCCGACTGAGCTGAAATTTA 57.734 40.909 0.00 0.00 0.00 1.40
3152 3297 3.735514 GCTGTTTGGTTGAGCGGTTTAAA 60.736 43.478 0.00 0.00 0.00 1.52
3185 3330 7.506114 TGTAAAACACTGAAGGATACAGAAGT 58.494 34.615 0.00 0.00 38.55 3.01
3197 3342 7.062749 AGGATACAGAAGTTGTGTAAACTCA 57.937 36.000 15.98 0.00 41.10 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.679680 CGTTCGGACTGATAGGCCTTA 59.320 52.381 12.58 0.00 42.96 2.69
3 4 0.460311 CGTTCGGACTGATAGGCCTT 59.540 55.000 12.58 0.00 42.96 4.35
4 5 0.395311 TCGTTCGGACTGATAGGCCT 60.395 55.000 11.78 11.78 42.96 5.19
5 6 0.458669 TTCGTTCGGACTGATAGGCC 59.541 55.000 0.00 0.00 41.17 5.19
6 7 1.557651 GTTCGTTCGGACTGATAGGC 58.442 55.000 0.00 0.00 0.00 3.93
7 8 1.823828 CGTTCGTTCGGACTGATAGG 58.176 55.000 2.21 0.00 0.00 2.57
17 18 2.170985 CTGCTTGCCGTTCGTTCG 59.829 61.111 0.00 0.00 0.00 3.95
18 19 1.204312 GTCTGCTTGCCGTTCGTTC 59.796 57.895 0.00 0.00 0.00 3.95
19 20 2.594962 CGTCTGCTTGCCGTTCGTT 61.595 57.895 0.00 0.00 0.00 3.85
20 21 3.036084 CGTCTGCTTGCCGTTCGT 61.036 61.111 0.00 0.00 0.00 3.85
21 22 2.720758 CTCGTCTGCTTGCCGTTCG 61.721 63.158 0.00 0.00 0.00 3.95
22 23 1.372997 TCTCGTCTGCTTGCCGTTC 60.373 57.895 0.00 0.00 0.00 3.95
23 24 1.664965 GTCTCGTCTGCTTGCCGTT 60.665 57.895 0.00 0.00 0.00 4.44
24 25 2.049063 GTCTCGTCTGCTTGCCGT 60.049 61.111 0.00 0.00 0.00 5.68
25 26 2.811317 GGTCTCGTCTGCTTGCCG 60.811 66.667 0.00 0.00 0.00 5.69
26 27 1.078848 ATGGTCTCGTCTGCTTGCC 60.079 57.895 0.00 0.00 0.00 4.52
27 28 1.416813 CGATGGTCTCGTCTGCTTGC 61.417 60.000 0.00 0.00 42.56 4.01
28 29 0.803768 CCGATGGTCTCGTCTGCTTG 60.804 60.000 0.00 0.00 46.18 4.01
29 30 1.513158 CCGATGGTCTCGTCTGCTT 59.487 57.895 0.00 0.00 46.18 3.91
30 31 3.069980 GCCGATGGTCTCGTCTGCT 62.070 63.158 0.00 0.00 46.18 4.24
31 32 2.583593 GCCGATGGTCTCGTCTGC 60.584 66.667 0.00 0.00 46.18 4.26
32 33 1.064946 GAGCCGATGGTCTCGTCTG 59.935 63.158 0.00 0.00 46.18 3.51
33 34 1.378646 TGAGCCGATGGTCTCGTCT 60.379 57.895 0.00 0.00 46.18 4.18
34 35 1.064946 CTGAGCCGATGGTCTCGTC 59.935 63.158 0.00 0.00 46.18 4.20
35 36 2.418910 CCTGAGCCGATGGTCTCGT 61.419 63.158 0.00 0.00 46.18 4.18
37 38 2.107953 GCCTGAGCCGATGGTCTC 59.892 66.667 0.00 1.81 39.75 3.36
38 39 3.842923 CGCCTGAGCCGATGGTCT 61.843 66.667 0.00 0.00 39.75 3.85
39 40 4.148825 ACGCCTGAGCCGATGGTC 62.149 66.667 0.00 0.00 39.48 4.02
40 41 4.148825 GACGCCTGAGCCGATGGT 62.149 66.667 0.00 0.00 34.57 3.55
55 56 0.025128 GCGATCTTCTTTTCGGCGAC 59.975 55.000 10.16 0.00 35.93 5.19
56 57 2.369870 GCGATCTTCTTTTCGGCGA 58.630 52.632 4.99 4.99 35.93 5.54
57 58 4.955238 GCGATCTTCTTTTCGGCG 57.045 55.556 0.00 0.00 35.93 6.46
59 60 0.370273 CACGGCGATCTTCTTTTCGG 59.630 55.000 16.62 0.00 35.93 4.30
60 61 0.370273 CCACGGCGATCTTCTTTTCG 59.630 55.000 16.62 0.00 38.37 3.46
61 62 1.128692 CACCACGGCGATCTTCTTTTC 59.871 52.381 16.62 0.00 0.00 2.29
62 63 1.156736 CACCACGGCGATCTTCTTTT 58.843 50.000 16.62 0.00 0.00 2.27
63 64 0.320374 TCACCACGGCGATCTTCTTT 59.680 50.000 16.62 0.00 0.00 2.52
64 65 0.108615 CTCACCACGGCGATCTTCTT 60.109 55.000 16.62 0.00 0.00 2.52
65 66 0.965866 TCTCACCACGGCGATCTTCT 60.966 55.000 16.62 0.00 0.00 2.85
66 67 0.108804 TTCTCACCACGGCGATCTTC 60.109 55.000 16.62 0.00 0.00 2.87
67 68 0.320374 TTTCTCACCACGGCGATCTT 59.680 50.000 16.62 0.00 0.00 2.40
68 69 0.108615 CTTTCTCACCACGGCGATCT 60.109 55.000 16.62 0.00 0.00 2.75
69 70 0.108804 TCTTTCTCACCACGGCGATC 60.109 55.000 16.62 0.00 0.00 3.69
70 71 0.108615 CTCTTTCTCACCACGGCGAT 60.109 55.000 16.62 0.00 0.00 4.58
71 72 1.289066 CTCTTTCTCACCACGGCGA 59.711 57.895 16.62 0.00 0.00 5.54
72 73 1.738099 CCTCTTTCTCACCACGGCG 60.738 63.158 4.80 4.80 0.00 6.46
73 74 2.035442 GCCTCTTTCTCACCACGGC 61.035 63.158 0.00 0.00 0.00 5.68
74 75 1.376037 GGCCTCTTTCTCACCACGG 60.376 63.158 0.00 0.00 0.00 4.94
75 76 1.738099 CGGCCTCTTTCTCACCACG 60.738 63.158 0.00 0.00 0.00 4.94
76 77 0.390472 CTCGGCCTCTTTCTCACCAC 60.390 60.000 0.00 0.00 0.00 4.16
77 78 1.544825 CCTCGGCCTCTTTCTCACCA 61.545 60.000 0.00 0.00 0.00 4.17
78 79 1.219393 CCTCGGCCTCTTTCTCACC 59.781 63.158 0.00 0.00 0.00 4.02
79 80 1.448717 GCCTCGGCCTCTTTCTCAC 60.449 63.158 0.00 0.00 34.56 3.51
80 81 2.982130 GCCTCGGCCTCTTTCTCA 59.018 61.111 0.00 0.00 34.56 3.27
90 91 0.531974 TCGAATAATGTGGCCTCGGC 60.532 55.000 3.32 0.00 41.06 5.54
91 92 1.800586 CATCGAATAATGTGGCCTCGG 59.199 52.381 3.32 0.00 0.00 4.63
92 93 1.195448 GCATCGAATAATGTGGCCTCG 59.805 52.381 3.32 2.59 0.00 4.63
93 94 2.221169 TGCATCGAATAATGTGGCCTC 58.779 47.619 3.32 0.00 0.00 4.70
94 95 2.346766 TGCATCGAATAATGTGGCCT 57.653 45.000 3.32 0.00 0.00 5.19
95 96 2.098934 TGTTGCATCGAATAATGTGGCC 59.901 45.455 0.00 0.00 0.00 5.36
96 97 3.419264 TGTTGCATCGAATAATGTGGC 57.581 42.857 0.00 0.00 0.00 5.01
97 98 5.172460 TGATGTTGCATCGAATAATGTGG 57.828 39.130 0.00 0.00 0.00 4.17
98 99 7.136772 AGATTGATGTTGCATCGAATAATGTG 58.863 34.615 3.49 0.00 0.00 3.21
99 100 7.012610 TGAGATTGATGTTGCATCGAATAATGT 59.987 33.333 3.49 0.00 0.00 2.71
100 101 7.322938 GTGAGATTGATGTTGCATCGAATAATG 59.677 37.037 3.49 0.00 0.00 1.90
101 102 7.358066 GTGAGATTGATGTTGCATCGAATAAT 58.642 34.615 3.49 0.00 0.00 1.28
102 103 6.238456 GGTGAGATTGATGTTGCATCGAATAA 60.238 38.462 3.49 0.00 0.00 1.40
103 104 5.237127 GGTGAGATTGATGTTGCATCGAATA 59.763 40.000 3.49 0.00 0.00 1.75
104 105 4.036027 GGTGAGATTGATGTTGCATCGAAT 59.964 41.667 3.49 5.28 0.00 3.34
105 106 3.374988 GGTGAGATTGATGTTGCATCGAA 59.625 43.478 3.49 1.30 0.00 3.71
106 107 2.938451 GGTGAGATTGATGTTGCATCGA 59.062 45.455 1.99 1.99 0.00 3.59
107 108 2.679336 TGGTGAGATTGATGTTGCATCG 59.321 45.455 4.89 0.00 0.00 3.84
108 109 4.707030 TTGGTGAGATTGATGTTGCATC 57.293 40.909 2.44 2.44 0.00 3.91
109 110 5.670792 ATTTGGTGAGATTGATGTTGCAT 57.329 34.783 0.00 0.00 0.00 3.96
110 111 5.231702 CAATTTGGTGAGATTGATGTTGCA 58.768 37.500 0.00 0.00 35.74 4.08
111 112 4.628333 CCAATTTGGTGAGATTGATGTTGC 59.372 41.667 7.31 0.00 35.74 4.17
126 127 7.531534 CGTTTTCGTTTAGTAGTACCAATTTGG 59.468 37.037 14.02 14.02 40.12 3.28
127 128 8.274939 TCGTTTTCGTTTAGTAGTACCAATTTG 58.725 33.333 0.00 0.00 44.46 2.32
128 129 8.364129 TCGTTTTCGTTTAGTAGTACCAATTT 57.636 30.769 0.00 0.00 44.46 1.82
129 130 7.945033 TCGTTTTCGTTTAGTAGTACCAATT 57.055 32.000 0.00 0.00 44.46 2.32
130 131 7.359514 GCTTCGTTTTCGTTTAGTAGTACCAAT 60.360 37.037 0.00 0.00 44.46 3.16
131 132 6.074356 GCTTCGTTTTCGTTTAGTAGTACCAA 60.074 38.462 0.00 0.00 44.46 3.67
132 133 5.402270 GCTTCGTTTTCGTTTAGTAGTACCA 59.598 40.000 0.00 0.00 44.46 3.25
133 134 5.164051 GGCTTCGTTTTCGTTTAGTAGTACC 60.164 44.000 0.00 0.00 44.46 3.34
134 135 5.164051 GGGCTTCGTTTTCGTTTAGTAGTAC 60.164 44.000 0.00 0.00 44.46 2.73
135 136 4.923281 GGGCTTCGTTTTCGTTTAGTAGTA 59.077 41.667 0.00 0.00 44.46 1.82
136 137 3.742882 GGGCTTCGTTTTCGTTTAGTAGT 59.257 43.478 0.00 0.00 44.46 2.73
137 138 3.992427 AGGGCTTCGTTTTCGTTTAGTAG 59.008 43.478 0.00 0.00 44.46 2.57
138 139 3.993920 AGGGCTTCGTTTTCGTTTAGTA 58.006 40.909 0.00 0.00 44.46 1.82
139 140 2.842457 AGGGCTTCGTTTTCGTTTAGT 58.158 42.857 0.00 0.00 44.46 2.24
140 141 4.996062 TTAGGGCTTCGTTTTCGTTTAG 57.004 40.909 0.00 0.00 44.46 1.85
141 142 5.469421 TGATTTAGGGCTTCGTTTTCGTTTA 59.531 36.000 0.00 0.00 44.46 2.01
142 143 4.276431 TGATTTAGGGCTTCGTTTTCGTTT 59.724 37.500 0.00 0.00 44.46 3.60
143 144 3.816523 TGATTTAGGGCTTCGTTTTCGTT 59.183 39.130 0.00 0.00 44.46 3.85
144 145 3.404899 TGATTTAGGGCTTCGTTTTCGT 58.595 40.909 0.00 0.00 44.46 3.85
145 146 3.435671 ACTGATTTAGGGCTTCGTTTTCG 59.564 43.478 0.00 0.00 45.64 3.46
146 147 4.379499 CCACTGATTTAGGGCTTCGTTTTC 60.379 45.833 0.00 0.00 0.00 2.29
147 148 3.506067 CCACTGATTTAGGGCTTCGTTTT 59.494 43.478 0.00 0.00 0.00 2.43
148 149 3.081804 CCACTGATTTAGGGCTTCGTTT 58.918 45.455 0.00 0.00 0.00 3.60
149 150 2.304761 TCCACTGATTTAGGGCTTCGTT 59.695 45.455 0.00 0.00 0.00 3.85
150 151 1.906574 TCCACTGATTTAGGGCTTCGT 59.093 47.619 0.00 0.00 0.00 3.85
151 152 2.678336 GTTCCACTGATTTAGGGCTTCG 59.322 50.000 0.00 0.00 0.00 3.79
152 153 3.686016 TGTTCCACTGATTTAGGGCTTC 58.314 45.455 0.00 0.00 0.00 3.86
153 154 3.806949 TGTTCCACTGATTTAGGGCTT 57.193 42.857 0.00 0.00 0.00 4.35
154 155 3.181434 TGTTGTTCCACTGATTTAGGGCT 60.181 43.478 0.00 0.00 0.00 5.19
155 156 3.153919 TGTTGTTCCACTGATTTAGGGC 58.846 45.455 0.00 0.00 0.00 5.19
156 157 3.758554 CCTGTTGTTCCACTGATTTAGGG 59.241 47.826 0.00 0.00 0.00 3.53
157 158 4.651778 TCCTGTTGTTCCACTGATTTAGG 58.348 43.478 0.00 0.00 0.00 2.69
158 159 6.349611 CCATTCCTGTTGTTCCACTGATTTAG 60.350 42.308 0.00 0.00 0.00 1.85
159 160 5.476599 CCATTCCTGTTGTTCCACTGATTTA 59.523 40.000 0.00 0.00 0.00 1.40
160 161 4.281688 CCATTCCTGTTGTTCCACTGATTT 59.718 41.667 0.00 0.00 0.00 2.17
161 162 3.828451 CCATTCCTGTTGTTCCACTGATT 59.172 43.478 0.00 0.00 0.00 2.57
162 163 3.074390 TCCATTCCTGTTGTTCCACTGAT 59.926 43.478 0.00 0.00 0.00 2.90
163 164 2.441375 TCCATTCCTGTTGTTCCACTGA 59.559 45.455 0.00 0.00 0.00 3.41
164 165 2.862541 TCCATTCCTGTTGTTCCACTG 58.137 47.619 0.00 0.00 0.00 3.66
165 166 3.593442 TTCCATTCCTGTTGTTCCACT 57.407 42.857 0.00 0.00 0.00 4.00
166 167 3.383185 TGTTTCCATTCCTGTTGTTCCAC 59.617 43.478 0.00 0.00 0.00 4.02
167 168 3.383185 GTGTTTCCATTCCTGTTGTTCCA 59.617 43.478 0.00 0.00 0.00 3.53
168 169 3.243737 GGTGTTTCCATTCCTGTTGTTCC 60.244 47.826 0.00 0.00 35.97 3.62
169 170 3.383185 TGGTGTTTCCATTCCTGTTGTTC 59.617 43.478 0.00 0.00 41.93 3.18
170 171 3.370104 TGGTGTTTCCATTCCTGTTGTT 58.630 40.909 0.00 0.00 41.93 2.83
171 172 3.025322 TGGTGTTTCCATTCCTGTTGT 57.975 42.857 0.00 0.00 41.93 3.32
182 183 1.304962 GGGGTGGGATGGTGTTTCC 60.305 63.158 0.00 0.00 0.00 3.13
183 184 0.323451 GAGGGGTGGGATGGTGTTTC 60.323 60.000 0.00 0.00 0.00 2.78
184 185 0.776080 AGAGGGGTGGGATGGTGTTT 60.776 55.000 0.00 0.00 0.00 2.83
185 186 1.151587 AGAGGGGTGGGATGGTGTT 60.152 57.895 0.00 0.00 0.00 3.32
186 187 1.616628 GAGAGGGGTGGGATGGTGT 60.617 63.158 0.00 0.00 0.00 4.16
187 188 2.378634 GGAGAGGGGTGGGATGGTG 61.379 68.421 0.00 0.00 0.00 4.17
188 189 2.042930 GGAGAGGGGTGGGATGGT 59.957 66.667 0.00 0.00 0.00 3.55
189 190 2.042762 TGGAGAGGGGTGGGATGG 59.957 66.667 0.00 0.00 0.00 3.51
190 191 2.750657 GCTGGAGAGGGGTGGGATG 61.751 68.421 0.00 0.00 0.00 3.51
191 192 2.367512 GCTGGAGAGGGGTGGGAT 60.368 66.667 0.00 0.00 0.00 3.85
192 193 3.931631 CTGCTGGAGAGGGGTGGGA 62.932 68.421 0.00 0.00 0.00 4.37
193 194 3.406200 CTGCTGGAGAGGGGTGGG 61.406 72.222 0.00 0.00 0.00 4.61
194 195 4.106925 GCTGCTGGAGAGGGGTGG 62.107 72.222 0.00 0.00 0.00 4.61
195 196 4.106925 GGCTGCTGGAGAGGGGTG 62.107 72.222 0.00 0.00 0.00 4.61
198 199 4.154347 GACGGCTGCTGGAGAGGG 62.154 72.222 13.87 0.00 0.00 4.30
199 200 4.504916 CGACGGCTGCTGGAGAGG 62.505 72.222 13.87 0.00 0.00 3.69
200 201 2.880719 CTTCGACGGCTGCTGGAGAG 62.881 65.000 13.87 1.57 0.00 3.20
201 202 2.989253 TTCGACGGCTGCTGGAGA 60.989 61.111 13.87 8.63 0.00 3.71
202 203 2.507992 CTTCGACGGCTGCTGGAG 60.508 66.667 13.87 6.28 0.00 3.86
203 204 4.742201 GCTTCGACGGCTGCTGGA 62.742 66.667 13.87 0.00 0.00 3.86
205 206 3.485431 CTGCTTCGACGGCTGCTG 61.485 66.667 6.98 6.98 0.00 4.41
212 213 4.753877 TCGTCCGCTGCTTCGACG 62.754 66.667 20.52 20.52 40.17 5.12
213 214 2.430244 TTCGTCCGCTGCTTCGAC 60.430 61.111 9.35 5.94 32.14 4.20
214 215 2.126463 CTTCGTCCGCTGCTTCGA 60.126 61.111 0.00 2.43 0.00 3.71
215 216 2.126463 TCTTCGTCCGCTGCTTCG 60.126 61.111 0.00 0.00 0.00 3.79
216 217 1.807573 CCTCTTCGTCCGCTGCTTC 60.808 63.158 0.00 0.00 0.00 3.86
217 218 2.262915 CCTCTTCGTCCGCTGCTT 59.737 61.111 0.00 0.00 0.00 3.91
218 219 3.764466 CCCTCTTCGTCCGCTGCT 61.764 66.667 0.00 0.00 0.00 4.24
219 220 4.821589 CCCCTCTTCGTCCGCTGC 62.822 72.222 0.00 0.00 0.00 5.25
220 221 3.358076 GACCCCTCTTCGTCCGCTG 62.358 68.421 0.00 0.00 0.00 5.18
221 222 3.069318 GACCCCTCTTCGTCCGCT 61.069 66.667 0.00 0.00 0.00 5.52
222 223 4.493747 CGACCCCTCTTCGTCCGC 62.494 72.222 0.00 0.00 0.00 5.54
223 224 3.823330 CCGACCCCTCTTCGTCCG 61.823 72.222 0.00 0.00 34.56 4.79
224 225 3.459063 CCCGACCCCTCTTCGTCC 61.459 72.222 0.00 0.00 34.56 4.79
225 226 1.736365 GATCCCGACCCCTCTTCGTC 61.736 65.000 0.00 0.00 34.56 4.20
226 227 1.757340 GATCCCGACCCCTCTTCGT 60.757 63.158 0.00 0.00 34.56 3.85
227 228 1.455959 AGATCCCGACCCCTCTTCG 60.456 63.158 0.00 0.00 36.20 3.79
228 229 1.403687 CCAGATCCCGACCCCTCTTC 61.404 65.000 0.00 0.00 0.00 2.87
229 230 1.383248 CCAGATCCCGACCCCTCTT 60.383 63.158 0.00 0.00 0.00 2.85
230 231 2.283809 CCAGATCCCGACCCCTCT 59.716 66.667 0.00 0.00 0.00 3.69
231 232 3.551407 GCCAGATCCCGACCCCTC 61.551 72.222 0.00 0.00 0.00 4.30
234 235 3.551407 GAGGCCAGATCCCGACCC 61.551 72.222 5.01 0.00 0.00 4.46
235 236 2.764128 TGAGGCCAGATCCCGACC 60.764 66.667 5.01 0.00 0.00 4.79
236 237 2.501610 GTGAGGCCAGATCCCGAC 59.498 66.667 5.01 0.00 0.00 4.79
237 238 2.764128 GGTGAGGCCAGATCCCGA 60.764 66.667 5.01 0.00 37.17 5.14
238 239 4.227134 CGGTGAGGCCAGATCCCG 62.227 72.222 5.01 5.13 36.97 5.14
239 240 2.764128 TCGGTGAGGCCAGATCCC 60.764 66.667 5.01 0.00 36.97 3.85
240 241 2.501610 GTCGGTGAGGCCAGATCC 59.498 66.667 5.01 0.31 36.97 3.36
241 242 2.105128 CGTCGGTGAGGCCAGATC 59.895 66.667 5.01 0.00 36.97 2.75
242 243 3.461773 CCGTCGGTGAGGCCAGAT 61.462 66.667 5.01 0.00 36.97 2.90
248 249 1.087771 GTTATTGCCCGTCGGTGAGG 61.088 60.000 11.06 0.00 0.00 3.86
249 250 0.108329 AGTTATTGCCCGTCGGTGAG 60.108 55.000 11.06 0.00 0.00 3.51
250 251 0.390603 CAGTTATTGCCCGTCGGTGA 60.391 55.000 11.06 0.00 0.00 4.02
251 252 2.086510 CAGTTATTGCCCGTCGGTG 58.913 57.895 11.06 2.85 0.00 4.94
252 253 4.609995 CAGTTATTGCCCGTCGGT 57.390 55.556 11.06 0.00 0.00 4.69
261 262 4.993584 AGATGATAGAAGCGGCAGTTATTG 59.006 41.667 1.45 0.00 0.00 1.90
262 263 5.220710 AGATGATAGAAGCGGCAGTTATT 57.779 39.130 1.45 0.00 0.00 1.40
263 264 4.281941 TGAGATGATAGAAGCGGCAGTTAT 59.718 41.667 1.45 0.00 0.00 1.89
264 265 3.636764 TGAGATGATAGAAGCGGCAGTTA 59.363 43.478 1.45 0.00 0.00 2.24
265 266 2.432146 TGAGATGATAGAAGCGGCAGTT 59.568 45.455 1.45 0.00 0.00 3.16
266 267 2.034878 TGAGATGATAGAAGCGGCAGT 58.965 47.619 1.45 0.00 0.00 4.40
267 268 2.295629 TCTGAGATGATAGAAGCGGCAG 59.704 50.000 1.45 0.00 0.00 4.85
268 269 2.310538 TCTGAGATGATAGAAGCGGCA 58.689 47.619 1.45 0.00 0.00 5.69
269 270 3.056304 GTTCTGAGATGATAGAAGCGGC 58.944 50.000 0.00 0.00 33.90 6.53
270 271 4.037327 TCTGTTCTGAGATGATAGAAGCGG 59.963 45.833 0.00 0.00 33.90 5.52
271 272 5.180367 TCTGTTCTGAGATGATAGAAGCG 57.820 43.478 0.00 0.00 33.90 4.68
272 273 4.984161 GCTCTGTTCTGAGATGATAGAAGC 59.016 45.833 10.14 0.00 36.23 3.86
273 274 6.146601 TGCTCTGTTCTGAGATGATAGAAG 57.853 41.667 10.14 0.00 36.23 2.85
274 275 6.535963 TTGCTCTGTTCTGAGATGATAGAA 57.464 37.500 10.14 0.00 36.23 2.10
275 276 6.535963 TTTGCTCTGTTCTGAGATGATAGA 57.464 37.500 10.14 0.00 36.23 1.98
276 277 5.234757 GCTTTGCTCTGTTCTGAGATGATAG 59.765 44.000 10.14 2.48 36.23 2.08
277 278 5.114780 GCTTTGCTCTGTTCTGAGATGATA 58.885 41.667 10.14 0.00 36.23 2.15
278 279 3.940221 GCTTTGCTCTGTTCTGAGATGAT 59.060 43.478 10.14 0.00 36.23 2.45
279 280 3.332919 GCTTTGCTCTGTTCTGAGATGA 58.667 45.455 10.14 0.00 36.23 2.92
280 281 2.093941 CGCTTTGCTCTGTTCTGAGATG 59.906 50.000 10.14 0.10 36.23 2.90
281 282 2.344950 CGCTTTGCTCTGTTCTGAGAT 58.655 47.619 10.14 0.00 36.23 2.75
282 283 1.606480 CCGCTTTGCTCTGTTCTGAGA 60.606 52.381 10.14 0.00 36.23 3.27
283 284 0.795085 CCGCTTTGCTCTGTTCTGAG 59.205 55.000 2.99 2.99 37.16 3.35
284 285 0.106708 ACCGCTTTGCTCTGTTCTGA 59.893 50.000 0.00 0.00 0.00 3.27
285 286 1.461127 GTACCGCTTTGCTCTGTTCTG 59.539 52.381 0.00 0.00 0.00 3.02
286 287 1.344763 AGTACCGCTTTGCTCTGTTCT 59.655 47.619 0.00 0.00 0.00 3.01
287 288 1.797025 AGTACCGCTTTGCTCTGTTC 58.203 50.000 0.00 0.00 0.00 3.18
288 289 2.036733 TGTAGTACCGCTTTGCTCTGTT 59.963 45.455 0.00 0.00 0.00 3.16
289 290 1.616865 TGTAGTACCGCTTTGCTCTGT 59.383 47.619 0.00 0.00 0.00 3.41
290 291 2.363788 TGTAGTACCGCTTTGCTCTG 57.636 50.000 0.00 0.00 0.00 3.35
291 292 3.396260 TTTGTAGTACCGCTTTGCTCT 57.604 42.857 0.00 0.00 0.00 4.09
292 293 4.436986 GGAATTTGTAGTACCGCTTTGCTC 60.437 45.833 0.00 0.00 0.00 4.26
293 294 3.439129 GGAATTTGTAGTACCGCTTTGCT 59.561 43.478 0.00 0.00 0.00 3.91
294 295 3.427098 GGGAATTTGTAGTACCGCTTTGC 60.427 47.826 0.00 0.00 0.00 3.68
295 296 3.128068 GGGGAATTTGTAGTACCGCTTTG 59.872 47.826 0.00 0.00 0.00 2.77
296 297 3.349927 GGGGAATTTGTAGTACCGCTTT 58.650 45.455 0.00 0.00 0.00 3.51
297 298 2.678769 CGGGGAATTTGTAGTACCGCTT 60.679 50.000 0.00 0.00 33.01 4.68
298 299 1.134610 CGGGGAATTTGTAGTACCGCT 60.135 52.381 0.00 0.00 33.01 5.52
299 300 1.292992 CGGGGAATTTGTAGTACCGC 58.707 55.000 0.00 0.00 33.01 5.68
300 301 1.473788 CCCGGGGAATTTGTAGTACCG 60.474 57.143 14.71 0.00 39.54 4.02
301 302 1.839354 TCCCGGGGAATTTGTAGTACC 59.161 52.381 23.50 0.00 0.00 3.34
302 303 3.851458 ATCCCGGGGAATTTGTAGTAC 57.149 47.619 23.50 0.00 34.34 2.73
303 304 3.524380 ACAATCCCGGGGAATTTGTAGTA 59.476 43.478 26.27 0.00 34.41 1.82
304 305 2.310647 ACAATCCCGGGGAATTTGTAGT 59.689 45.455 26.27 8.85 34.41 2.73
305 306 3.012934 ACAATCCCGGGGAATTTGTAG 57.987 47.619 26.27 8.26 34.41 2.74
306 307 4.799715 ATACAATCCCGGGGAATTTGTA 57.200 40.909 30.44 30.44 39.74 2.41
307 308 3.680777 ATACAATCCCGGGGAATTTGT 57.319 42.857 28.79 28.79 38.18 2.83
308 309 3.704061 ACAATACAATCCCGGGGAATTTG 59.296 43.478 23.50 22.12 34.34 2.32
309 310 3.704061 CACAATACAATCCCGGGGAATTT 59.296 43.478 23.50 8.11 34.34 1.82
310 311 3.295973 CACAATACAATCCCGGGGAATT 58.704 45.455 23.50 12.35 34.34 2.17
311 312 2.243736 ACACAATACAATCCCGGGGAAT 59.756 45.455 23.50 9.33 34.34 3.01
312 313 1.636519 ACACAATACAATCCCGGGGAA 59.363 47.619 23.50 3.25 34.34 3.97
313 314 1.291109 ACACAATACAATCCCGGGGA 58.709 50.000 23.50 20.15 35.55 4.81
314 315 2.567985 GTACACAATACAATCCCGGGG 58.432 52.381 23.50 6.77 0.00 5.73
315 316 2.206750 CGTACACAATACAATCCCGGG 58.793 52.381 16.85 16.85 0.00 5.73
316 317 2.605818 CACGTACACAATACAATCCCGG 59.394 50.000 0.00 0.00 0.00 5.73
317 318 2.605818 CCACGTACACAATACAATCCCG 59.394 50.000 0.00 0.00 0.00 5.14
318 319 2.940410 CCCACGTACACAATACAATCCC 59.060 50.000 0.00 0.00 0.00 3.85
319 320 3.602483 ACCCACGTACACAATACAATCC 58.398 45.455 0.00 0.00 0.00 3.01
320 321 6.019318 GTGATACCCACGTACACAATACAATC 60.019 42.308 0.00 0.00 35.86 2.67
361 362 7.389232 TCATGTCAATCTCAAATCTACAGTGT 58.611 34.615 0.00 0.00 0.00 3.55
362 363 7.838771 TCATGTCAATCTCAAATCTACAGTG 57.161 36.000 0.00 0.00 0.00 3.66
373 374 4.305539 ACACCCATTCATGTCAATCTCA 57.694 40.909 0.00 0.00 0.00 3.27
384 385 7.825331 TTAAAGTTCATACAACACCCATTCA 57.175 32.000 0.00 0.00 0.00 2.57
422 423 1.455408 GTTTTTGGTTAGCGTGCATGC 59.545 47.619 23.58 23.58 0.00 4.06
436 437 4.178545 CATAGGCTGGAACCAGTTTTTG 57.821 45.455 19.97 10.99 45.24 2.44
454 455 8.052748 AGCCAGTGAAATGAGTAAATAACCATA 58.947 33.333 0.00 0.00 0.00 2.74
456 457 6.245408 AGCCAGTGAAATGAGTAAATAACCA 58.755 36.000 0.00 0.00 0.00 3.67
483 484 9.717942 CTATTTTGGAATCTGAGGGAGTAATAG 57.282 37.037 0.00 0.00 0.00 1.73
485 486 8.337118 TCTATTTTGGAATCTGAGGGAGTAAT 57.663 34.615 0.00 0.00 0.00 1.89
486 487 7.749377 TCTATTTTGGAATCTGAGGGAGTAA 57.251 36.000 0.00 0.00 0.00 2.24
487 488 7.568738 TCATCTATTTTGGAATCTGAGGGAGTA 59.431 37.037 0.00 0.00 0.00 2.59
488 489 6.388100 TCATCTATTTTGGAATCTGAGGGAGT 59.612 38.462 0.00 0.00 0.00 3.85
489 490 6.709846 GTCATCTATTTTGGAATCTGAGGGAG 59.290 42.308 0.00 0.00 0.00 4.30
490 491 6.388100 AGTCATCTATTTTGGAATCTGAGGGA 59.612 38.462 0.00 0.00 0.00 4.20
491 492 6.599445 AGTCATCTATTTTGGAATCTGAGGG 58.401 40.000 0.00 0.00 0.00 4.30
492 493 7.278135 TGAGTCATCTATTTTGGAATCTGAGG 58.722 38.462 0.00 0.00 0.00 3.86
493 494 8.728337 TTGAGTCATCTATTTTGGAATCTGAG 57.272 34.615 0.00 0.00 0.00 3.35
494 495 9.690913 ATTTGAGTCATCTATTTTGGAATCTGA 57.309 29.630 0.00 0.00 0.00 3.27
551 552 9.768215 TCCATTCCAAAATAGAAGACCTAATTT 57.232 29.630 0.00 0.00 32.23 1.82
552 553 9.413734 CTCCATTCCAAAATAGAAGACCTAATT 57.586 33.333 0.00 0.00 0.00 1.40
553 554 8.001292 CCTCCATTCCAAAATAGAAGACCTAAT 58.999 37.037 0.00 0.00 0.00 1.73
554 555 7.183839 TCCTCCATTCCAAAATAGAAGACCTAA 59.816 37.037 0.00 0.00 0.00 2.69
555 556 6.676632 TCCTCCATTCCAAAATAGAAGACCTA 59.323 38.462 0.00 0.00 0.00 3.08
556 557 5.492524 TCCTCCATTCCAAAATAGAAGACCT 59.507 40.000 0.00 0.00 0.00 3.85
557 558 5.755849 TCCTCCATTCCAAAATAGAAGACC 58.244 41.667 0.00 0.00 0.00 3.85
558 559 6.887002 ACTTCCTCCATTCCAAAATAGAAGAC 59.113 38.462 0.00 0.00 0.00 3.01
559 560 7.032598 ACTTCCTCCATTCCAAAATAGAAGA 57.967 36.000 0.00 0.00 0.00 2.87
560 561 7.829211 TGTACTTCCTCCATTCCAAAATAGAAG 59.171 37.037 0.00 0.00 0.00 2.85
561 562 7.695055 TGTACTTCCTCCATTCCAAAATAGAA 58.305 34.615 0.00 0.00 0.00 2.10
562 563 7.265599 TGTACTTCCTCCATTCCAAAATAGA 57.734 36.000 0.00 0.00 0.00 1.98
563 564 7.995488 AGATGTACTTCCTCCATTCCAAAATAG 59.005 37.037 5.19 0.00 0.00 1.73
564 565 7.872138 AGATGTACTTCCTCCATTCCAAAATA 58.128 34.615 5.19 0.00 0.00 1.40
565 566 6.735556 AGATGTACTTCCTCCATTCCAAAAT 58.264 36.000 5.19 0.00 0.00 1.82
566 567 6.139679 AGATGTACTTCCTCCATTCCAAAA 57.860 37.500 5.19 0.00 0.00 2.44
567 568 5.779241 AGATGTACTTCCTCCATTCCAAA 57.221 39.130 5.19 0.00 0.00 3.28
568 569 6.884472 TTAGATGTACTTCCTCCATTCCAA 57.116 37.500 5.19 0.00 0.00 3.53
569 570 7.567250 TGTATTAGATGTACTTCCTCCATTCCA 59.433 37.037 5.19 0.00 0.00 3.53
570 571 7.963532 TGTATTAGATGTACTTCCTCCATTCC 58.036 38.462 5.19 0.00 0.00 3.01
571 572 8.861086 TCTGTATTAGATGTACTTCCTCCATTC 58.139 37.037 5.19 0.00 0.00 2.67
572 573 8.783660 TCTGTATTAGATGTACTTCCTCCATT 57.216 34.615 5.19 0.00 0.00 3.16
573 574 8.643324 GTTCTGTATTAGATGTACTTCCTCCAT 58.357 37.037 5.19 0.00 34.80 3.41
574 575 7.618117 TGTTCTGTATTAGATGTACTTCCTCCA 59.382 37.037 5.19 0.00 34.80 3.86
575 576 8.008513 TGTTCTGTATTAGATGTACTTCCTCC 57.991 38.462 5.19 0.00 34.80 4.30
576 577 9.871238 TTTGTTCTGTATTAGATGTACTTCCTC 57.129 33.333 5.19 0.00 34.80 3.71
599 600 9.884465 CCTCACTAAACTTAATCTGACTTTTTG 57.116 33.333 0.00 0.00 0.00 2.44
600 601 8.568794 GCCTCACTAAACTTAATCTGACTTTTT 58.431 33.333 0.00 0.00 0.00 1.94
601 602 7.939588 AGCCTCACTAAACTTAATCTGACTTTT 59.060 33.333 0.00 0.00 0.00 2.27
603 604 7.010339 AGCCTCACTAAACTTAATCTGACTT 57.990 36.000 0.00 0.00 0.00 3.01
605 606 6.402658 GCAAGCCTCACTAAACTTAATCTGAC 60.403 42.308 0.00 0.00 0.00 3.51
606 607 5.643777 GCAAGCCTCACTAAACTTAATCTGA 59.356 40.000 0.00 0.00 0.00 3.27
610 619 5.770162 ACTTGCAAGCCTCACTAAACTTAAT 59.230 36.000 26.27 0.00 0.00 1.40
617 626 1.238439 GCACTTGCAAGCCTCACTAA 58.762 50.000 26.27 0.00 41.59 2.24
630 639 4.441913 GGGACCATATCAAATTGGCACTTG 60.442 45.833 0.00 2.73 36.41 3.16
732 745 3.424703 ACTTAACTGGCACGTACCTAGA 58.575 45.455 6.34 0.00 0.00 2.43
769 784 6.699366 ACATGTTATGTCCATTTGAAATGCA 58.301 32.000 12.26 6.54 39.92 3.96
770 785 7.331440 TCAACATGTTATGTCCATTTGAAATGC 59.669 33.333 11.53 0.87 44.07 3.56
819 834 1.901085 GGATCTCAGTGCCTCCGTT 59.099 57.895 0.00 0.00 0.00 4.44
826 841 0.179089 ATGCAGACGGATCTCAGTGC 60.179 55.000 0.00 0.00 30.42 4.40
830 845 0.466963 ATGCATGCAGACGGATCTCA 59.533 50.000 26.69 0.00 30.42 3.27
905 920 3.211045 GTTATGTTGGGCGTATGGATGT 58.789 45.455 0.00 0.00 0.00 3.06
915 930 1.323412 TGGTGTGTGTTATGTTGGGC 58.677 50.000 0.00 0.00 0.00 5.36
943 958 0.466922 AGTGAGGCTTGCAAGTTGCT 60.467 50.000 27.17 14.79 45.31 3.91
944 959 1.238439 TAGTGAGGCTTGCAAGTTGC 58.762 50.000 26.55 21.17 45.29 4.17
945 960 3.316308 AGTTTAGTGAGGCTTGCAAGTTG 59.684 43.478 26.55 3.95 0.00 3.16
946 961 3.555966 AGTTTAGTGAGGCTTGCAAGTT 58.444 40.909 26.55 15.83 0.00 2.66
947 962 3.214696 AGTTTAGTGAGGCTTGCAAGT 57.785 42.857 26.55 8.88 0.00 3.16
948 963 3.893720 CAAGTTTAGTGAGGCTTGCAAG 58.106 45.455 22.44 22.44 33.14 4.01
949 964 3.988379 CAAGTTTAGTGAGGCTTGCAA 57.012 42.857 0.00 0.00 33.14 4.08
952 967 3.988379 TTGCAAGTTTAGTGAGGCTTG 57.012 42.857 0.00 0.00 40.68 4.01
953 968 3.243535 GCTTTGCAAGTTTAGTGAGGCTT 60.244 43.478 0.00 0.00 0.00 4.35
954 969 2.294512 GCTTTGCAAGTTTAGTGAGGCT 59.705 45.455 0.00 0.00 0.00 4.58
955 970 2.608016 GGCTTTGCAAGTTTAGTGAGGC 60.608 50.000 0.00 0.00 0.00 4.70
958 973 2.360801 GTGGGCTTTGCAAGTTTAGTGA 59.639 45.455 0.00 0.00 0.00 3.41
959 974 2.742774 GTGGGCTTTGCAAGTTTAGTG 58.257 47.619 0.00 0.00 0.00 2.74
961 976 1.606668 TCGTGGGCTTTGCAAGTTTAG 59.393 47.619 0.00 0.00 0.00 1.85
962 977 1.335496 GTCGTGGGCTTTGCAAGTTTA 59.665 47.619 0.00 0.00 0.00 2.01
963 978 0.102300 GTCGTGGGCTTTGCAAGTTT 59.898 50.000 0.00 0.00 0.00 2.66
964 979 0.751643 AGTCGTGGGCTTTGCAAGTT 60.752 50.000 0.00 0.00 0.00 2.66
965 980 1.152963 AGTCGTGGGCTTTGCAAGT 60.153 52.632 0.00 0.00 0.00 3.16
1137 1152 4.545706 CTCCCGGCGCCATTAGCA 62.546 66.667 28.98 2.02 44.04 3.49
1146 1161 1.300931 CATACCATCACTCCCGGCG 60.301 63.158 0.00 0.00 0.00 6.46
1149 1164 2.300152 AGTATGCATACCATCACTCCCG 59.700 50.000 29.00 0.00 35.34 5.14
1165 1184 9.559732 TTATCATACATCAGTTTGGGAAGTATG 57.440 33.333 10.05 10.05 43.24 2.39
1172 1191 8.345565 GCTTAACTTATCATACATCAGTTTGGG 58.654 37.037 0.00 0.00 0.00 4.12
1173 1192 9.113838 AGCTTAACTTATCATACATCAGTTTGG 57.886 33.333 0.00 0.00 0.00 3.28
1216 1286 5.980116 CGATGCTAGCTTGACTACATACTTT 59.020 40.000 17.23 0.00 0.00 2.66
1219 1289 5.109662 TCGATGCTAGCTTGACTACATAC 57.890 43.478 17.23 0.00 0.00 2.39
1220 1290 5.473504 TGATCGATGCTAGCTTGACTACATA 59.526 40.000 17.23 0.00 0.00 2.29
1221 1291 4.279420 TGATCGATGCTAGCTTGACTACAT 59.721 41.667 17.23 0.00 0.00 2.29
1222 1292 3.632145 TGATCGATGCTAGCTTGACTACA 59.368 43.478 17.23 9.21 0.00 2.74
1223 1293 4.230314 TGATCGATGCTAGCTTGACTAC 57.770 45.455 17.23 7.08 0.00 2.73
1236 1306 5.107837 GCTAAACCGTGAACTATGATCGATG 60.108 44.000 0.54 0.00 0.00 3.84
1248 1318 5.756347 GGTACATATGATGCTAAACCGTGAA 59.244 40.000 10.38 0.00 0.00 3.18
1252 1322 4.304110 ACGGTACATATGATGCTAAACCG 58.696 43.478 10.38 16.28 44.27 4.44
1254 1324 8.583810 TTAGAACGGTACATATGATGCTAAAC 57.416 34.615 10.38 0.00 0.00 2.01
1289 1368 1.450211 GCACGCCCCACCTGTATAT 59.550 57.895 0.00 0.00 0.00 0.86
1415 1494 3.118775 TGTTTCATAGGGGACACTGATCG 60.119 47.826 0.00 0.00 0.00 3.69
1442 1525 4.119442 TGCGAGACCTGGTATAGTTTTC 57.881 45.455 0.00 0.00 0.00 2.29
1452 1536 1.450848 ACATGCATGCGAGACCTGG 60.451 57.895 26.53 0.00 0.00 4.45
1453 1537 1.022982 ACACATGCATGCGAGACCTG 61.023 55.000 26.53 16.84 0.00 4.00
1498 1587 5.121768 GTGCATTTCACCTAGATTAACACGT 59.878 40.000 0.00 0.00 39.79 4.49
1499 1588 5.351465 AGTGCATTTCACCTAGATTAACACG 59.649 40.000 0.00 0.00 46.81 4.49
1500 1589 6.403636 CCAGTGCATTTCACCTAGATTAACAC 60.404 42.308 0.00 0.00 46.81 3.32
1501 1590 5.647658 CCAGTGCATTTCACCTAGATTAACA 59.352 40.000 0.00 0.00 46.81 2.41
1502 1591 5.648092 ACCAGTGCATTTCACCTAGATTAAC 59.352 40.000 0.00 0.00 46.81 2.01
1676 1765 1.815421 CTGGATTTGGAGGACGCCG 60.815 63.158 0.00 0.00 0.00 6.46
1718 1807 1.291877 GGGCAGTGTTAGAGTGTGCG 61.292 60.000 0.00 0.00 34.86 5.34
1818 1907 1.339097 GCCCGTGGTCTATCTATGGT 58.661 55.000 0.00 0.00 32.65 3.55
1823 1912 2.838225 CCGGCCCGTGGTCTATCT 60.838 66.667 0.85 0.00 0.00 1.98
1898 1998 3.387050 ACCAGTTATTACCACGGAGGATC 59.613 47.826 2.94 0.00 41.22 3.36
1899 1999 3.381335 ACCAGTTATTACCACGGAGGAT 58.619 45.455 2.94 0.00 41.22 3.24
1900 2000 2.823959 ACCAGTTATTACCACGGAGGA 58.176 47.619 2.94 0.00 41.22 3.71
1909 2009 7.695201 GCGGAGTAATGAAAAACCAGTTATTAC 59.305 37.037 0.00 0.00 33.45 1.89
1912 2012 5.708230 TGCGGAGTAATGAAAAACCAGTTAT 59.292 36.000 0.00 0.00 0.00 1.89
1943 2046 0.813610 AGTTGCACTGCACGCTGTAA 60.814 50.000 2.26 0.00 38.71 2.41
2101 2204 4.025858 ACGAGTGCTGCATGGGCT 62.026 61.111 5.27 0.00 41.91 5.19
2105 2208 3.129502 CCCCACGAGTGCTGCATG 61.130 66.667 5.27 0.00 0.00 4.06
2292 2397 7.573656 CGTGCATGCAATCCAATACAAGTATAT 60.574 37.037 24.58 0.00 0.00 0.86
2295 2400 4.201901 CGTGCATGCAATCCAATACAAGTA 60.202 41.667 24.58 0.00 0.00 2.24
2296 2401 3.427909 CGTGCATGCAATCCAATACAAGT 60.428 43.478 24.58 0.00 0.00 3.16
2297 2402 3.110358 CGTGCATGCAATCCAATACAAG 58.890 45.455 24.58 0.00 0.00 3.16
2304 2409 1.018910 CATCTCGTGCATGCAATCCA 58.981 50.000 24.58 7.57 0.00 3.41
2305 2410 0.309922 CCATCTCGTGCATGCAATCC 59.690 55.000 24.58 9.54 0.00 3.01
2306 2411 1.019673 ACCATCTCGTGCATGCAATC 58.980 50.000 24.58 10.36 0.00 2.67
2308 2413 2.173433 CACCATCTCGTGCATGCAA 58.827 52.632 24.58 7.19 0.00 4.08
2338 2463 2.411748 CGCACACACAGTACATAGGTTG 59.588 50.000 0.00 0.00 0.00 3.77
2349 2474 1.012343 CGAACACACGCACACACAG 60.012 57.895 0.00 0.00 0.00 3.66
2391 2524 2.095372 CCGCCGTTATTTCAGTTCTTCC 59.905 50.000 0.00 0.00 0.00 3.46
2450 2585 2.035783 GGCCAACAGGGGAGAACC 59.964 66.667 0.00 0.00 37.04 3.62
2452 2587 2.002018 AAACGGCCAACAGGGGAGAA 62.002 55.000 2.24 0.00 37.04 2.87
2554 2692 6.035843 CCCAACACATGCATTAACATAACTC 58.964 40.000 0.00 0.00 0.00 3.01
2555 2693 5.624281 GCCCAACACATGCATTAACATAACT 60.624 40.000 0.00 0.00 0.00 2.24
2559 2697 2.833338 AGCCCAACACATGCATTAACAT 59.167 40.909 0.00 0.00 0.00 2.71
2640 2778 0.753262 AGCGAGGATCAACGGCTTAT 59.247 50.000 11.51 0.00 33.17 1.73
2642 2780 1.448540 CAGCGAGGATCAACGGCTT 60.449 57.895 11.51 0.00 33.17 4.35
2664 2802 5.302568 ACTTGAAAGCATTCTCAACCATTGA 59.697 36.000 3.03 0.00 36.48 2.57
2677 2815 3.633525 TGCTTCACTTCACTTGAAAGCAT 59.366 39.130 10.61 0.00 34.78 3.79
2720 2858 4.415150 CGCCATCAGCAGGGGTGT 62.415 66.667 0.00 0.00 44.04 4.16
2732 2871 0.321210 TCACGAATGACAACCGCCAT 60.321 50.000 0.00 0.00 0.00 4.40
2739 2878 3.821033 TCTCTCACTCTCACGAATGACAA 59.179 43.478 0.00 0.00 0.00 3.18
2742 2881 3.938334 CTCTCTCTCACTCTCACGAATGA 59.062 47.826 0.00 0.00 0.00 2.57
2935 3079 4.019174 CAATCCTCAAACCAGCTAACCAT 58.981 43.478 0.00 0.00 0.00 3.55
2969 3113 7.223584 TGACAAAACCACTCTCAAATCTGATA 58.776 34.615 0.00 0.00 0.00 2.15
3031 3175 3.244112 CCTACCCAAACTGTTCGTCTCTT 60.244 47.826 0.00 0.00 0.00 2.85
3032 3176 2.299297 CCTACCCAAACTGTTCGTCTCT 59.701 50.000 0.00 0.00 0.00 3.10
3082 3227 2.907892 TGAGTTCTTGACATCCCCTCT 58.092 47.619 0.00 0.00 0.00 3.69
3152 3297 6.872920 TCCTTCAGTGTTTTACAAATTGCTT 58.127 32.000 0.00 0.00 0.00 3.91
3197 3342 2.230750 GAGGCAAGATTTCAGCAAAGCT 59.769 45.455 0.00 0.00 40.04 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.