Multiple sequence alignment - TraesCS2A01G413200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G413200 chr2A 100.000 3659 0 0 1 3659 670461554 670457896 0.000000e+00 6758.0
1 TraesCS2A01G413200 chr2D 93.478 3051 113 44 3 3041 524967487 524964511 0.000000e+00 4453.0
2 TraesCS2A01G413200 chr2D 98.438 256 4 0 3404 3659 524964054 524963799 5.570000e-123 451.0
3 TraesCS2A01G413200 chr2D 93.310 284 18 1 3070 3353 524964336 524964054 5.650000e-113 418.0
4 TraesCS2A01G413200 chr2B 93.650 2756 109 34 3 2738 621065349 621062640 0.000000e+00 4060.0
5 TraesCS2A01G413200 chr2B 91.768 328 17 6 2737 3060 621062528 621062207 7.210000e-122 448.0
6 TraesCS2A01G413200 chr2B 92.027 301 20 3 3146 3443 621058285 621057986 1.570000e-113 420.0
7 TraesCS2A01G413200 chr2B 94.521 219 9 3 3429 3647 621055708 621055493 5.850000e-88 335.0
8 TraesCS2A01G413200 chr6D 88.060 67 8 0 188 254 403051632 403051566 3.030000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G413200 chr2A 670457896 670461554 3658 True 6758.00 6758 100.000000 1 3659 1 chr2A.!!$R1 3658
1 TraesCS2A01G413200 chr2D 524963799 524967487 3688 True 1774.00 4453 95.075333 3 3659 3 chr2D.!!$R1 3656
2 TraesCS2A01G413200 chr2B 621055493 621065349 9856 True 1315.75 4060 92.991500 3 3647 4 chr2B.!!$R1 3644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 833 0.317770 TGGTTAACGACGACGGACAC 60.318 55.0 12.58 4.52 44.46 3.67 F
843 864 0.319728 CTGCATCTCCCCATCGTAGG 59.680 60.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 1977 0.110238 CGTTTGTCCTGGCATCAACG 60.110 55.000 11.03 11.03 0.0 4.10 R
2711 2734 1.000843 CCATCTCACTGTGTCGGTTCA 59.999 52.381 7.79 0.00 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 48 9.904198 TGTGAAATCATAATATCCAAAGAGACA 57.096 29.630 0.00 0.00 0.00 3.41
57 65 5.003804 AGAGACAATTGCGGTAGAACATTT 58.996 37.500 5.05 0.00 0.00 2.32
108 116 4.792521 AGAGGAACTAGCAGTACACAAG 57.207 45.455 0.00 0.00 41.55 3.16
109 117 3.056465 AGAGGAACTAGCAGTACACAAGC 60.056 47.826 0.00 0.00 41.55 4.01
110 118 2.632996 AGGAACTAGCAGTACACAAGCA 59.367 45.455 0.00 0.00 36.02 3.91
111 119 3.261897 AGGAACTAGCAGTACACAAGCAT 59.738 43.478 0.00 0.00 36.02 3.79
142 154 6.045955 GTGCTTTTCATGGTAAAAACAGGAA 58.954 36.000 0.00 0.00 36.92 3.36
143 155 6.705825 GTGCTTTTCATGGTAAAAACAGGAAT 59.294 34.615 0.00 0.00 38.27 3.01
167 179 1.956170 CACCTGCACGAGACCACAC 60.956 63.158 0.00 0.00 0.00 3.82
185 197 3.595691 CACGAGAAAGAGTGTGGCT 57.404 52.632 0.00 0.00 33.97 4.75
186 198 2.724977 CACGAGAAAGAGTGTGGCTA 57.275 50.000 0.00 0.00 33.97 3.93
187 199 2.600731 CACGAGAAAGAGTGTGGCTAG 58.399 52.381 0.00 0.00 33.97 3.42
202 214 1.199097 GGCTAGCTAGATCTCAGTCGC 59.801 57.143 25.15 5.34 0.00 5.19
248 260 7.326789 CAGCCAAGTGACACAACATATAAAAAG 59.673 37.037 8.59 0.00 0.00 2.27
354 367 3.196254 GCAATCCCAGTCATGGTGAATTT 59.804 43.478 0.00 0.00 46.10 1.82
366 379 4.627284 TGGTGAATTTCGAGAGGGTAAA 57.373 40.909 0.00 0.00 0.00 2.01
375 388 2.426024 TCGAGAGGGTAAAATGGAGACG 59.574 50.000 0.00 0.00 0.00 4.18
376 389 2.481449 CGAGAGGGTAAAATGGAGACGG 60.481 54.545 0.00 0.00 0.00 4.79
377 390 2.500504 GAGAGGGTAAAATGGAGACGGT 59.499 50.000 0.00 0.00 0.00 4.83
378 391 2.500504 AGAGGGTAAAATGGAGACGGTC 59.499 50.000 0.00 0.00 0.00 4.79
379 392 1.206371 AGGGTAAAATGGAGACGGTCG 59.794 52.381 1.89 0.00 0.00 4.79
514 533 2.230660 CAAACCTCCAACTCCAACTCC 58.769 52.381 0.00 0.00 0.00 3.85
517 536 2.065799 ACCTCCAACTCCAACTCCAAT 58.934 47.619 0.00 0.00 0.00 3.16
786 807 0.928451 GTTCAACAGTTTGCCGCGAC 60.928 55.000 8.23 0.00 32.17 5.19
803 824 1.353076 GACCGTCCATGGTTAACGAC 58.647 55.000 22.25 13.39 44.01 4.34
811 832 0.597568 ATGGTTAACGACGACGGACA 59.402 50.000 12.58 3.48 44.46 4.02
812 833 0.317770 TGGTTAACGACGACGGACAC 60.318 55.000 12.58 4.52 44.46 3.67
824 845 3.712881 GGACACAACCGCTCGCAC 61.713 66.667 0.00 0.00 0.00 5.34
825 846 2.661866 GACACAACCGCTCGCACT 60.662 61.111 0.00 0.00 0.00 4.40
826 847 2.943345 GACACAACCGCTCGCACTG 61.943 63.158 0.00 0.00 0.00 3.66
827 848 4.374702 CACAACCGCTCGCACTGC 62.375 66.667 0.00 0.00 0.00 4.40
828 849 4.908687 ACAACCGCTCGCACTGCA 62.909 61.111 1.11 0.00 0.00 4.41
829 850 3.425713 CAACCGCTCGCACTGCAT 61.426 61.111 1.11 0.00 0.00 3.96
830 851 3.121030 AACCGCTCGCACTGCATC 61.121 61.111 1.11 0.00 0.00 3.91
831 852 3.596066 AACCGCTCGCACTGCATCT 62.596 57.895 1.11 0.00 0.00 2.90
832 853 3.260483 CCGCTCGCACTGCATCTC 61.260 66.667 1.11 0.00 0.00 2.75
833 854 3.260483 CGCTCGCACTGCATCTCC 61.260 66.667 1.11 0.00 0.00 3.71
834 855 2.894387 GCTCGCACTGCATCTCCC 60.894 66.667 1.11 0.00 0.00 4.30
835 856 2.202987 CTCGCACTGCATCTCCCC 60.203 66.667 1.11 0.00 0.00 4.81
836 857 3.002583 TCGCACTGCATCTCCCCA 61.003 61.111 1.11 0.00 0.00 4.96
837 858 2.191375 CGCACTGCATCTCCCCAT 59.809 61.111 1.11 0.00 0.00 4.00
838 859 1.890979 CGCACTGCATCTCCCCATC 60.891 63.158 1.11 0.00 0.00 3.51
839 860 1.890979 GCACTGCATCTCCCCATCG 60.891 63.158 0.00 0.00 0.00 3.84
840 861 1.524002 CACTGCATCTCCCCATCGT 59.476 57.895 0.00 0.00 0.00 3.73
841 862 0.752658 CACTGCATCTCCCCATCGTA 59.247 55.000 0.00 0.00 0.00 3.43
842 863 1.043816 ACTGCATCTCCCCATCGTAG 58.956 55.000 0.00 0.00 0.00 3.51
843 864 0.319728 CTGCATCTCCCCATCGTAGG 59.680 60.000 0.00 0.00 0.00 3.18
844 865 1.004440 GCATCTCCCCATCGTAGGC 60.004 63.158 0.00 0.00 0.00 3.93
845 866 1.290324 CATCTCCCCATCGTAGGCG 59.710 63.158 0.00 0.00 39.92 5.52
885 906 2.644676 TCTCCATCGTCTCTGGTACTG 58.355 52.381 0.00 0.00 35.19 2.74
886 907 1.066303 CTCCATCGTCTCTGGTACTGC 59.934 57.143 0.00 0.00 35.19 4.40
909 930 1.668751 GTGTTTGCGTTTCCACAGAGA 59.331 47.619 0.00 0.00 0.00 3.10
951 972 3.430862 CCCGCCACATGTTGACGG 61.431 66.667 19.28 19.28 43.44 4.79
1390 1411 2.035155 TGGCCGACGAAGAGGAGA 59.965 61.111 0.00 0.00 0.00 3.71
1395 1416 1.502640 CGACGAAGAGGAGAACGCT 59.497 57.895 0.00 0.00 0.00 5.07
1637 1658 2.066999 ACGGGAGAAGGCCTCATCC 61.067 63.158 22.61 22.61 43.76 3.51
1647 1668 2.513204 CCTCATCCACAGCCGCAG 60.513 66.667 0.00 0.00 0.00 5.18
1663 1684 1.215382 CAGCACTTCCCGATCGTCA 59.785 57.895 15.09 0.00 0.00 4.35
2279 2300 3.768922 GCAGCTCACTCTCCGGCT 61.769 66.667 0.00 0.00 35.23 5.52
2458 2479 1.171308 CAGCCACCAGAACAAGATGG 58.829 55.000 0.00 0.00 42.60 3.51
2720 2743 1.116308 TGACTGAACCTGAACCGACA 58.884 50.000 0.00 0.00 0.00 4.35
2722 2745 0.828022 ACTGAACCTGAACCGACACA 59.172 50.000 0.00 0.00 0.00 3.72
2723 2746 1.202533 ACTGAACCTGAACCGACACAG 60.203 52.381 0.00 0.00 0.00 3.66
2851 2990 9.354673 TGATTTGCTAATTTTTATAGGCTAGCT 57.645 29.630 15.72 3.22 34.27 3.32
2903 3042 5.463392 GTGTGTATGTATGATCGAGCAACAT 59.537 40.000 24.25 24.25 35.16 2.71
2930 3069 5.950758 TTCTCAGCGGCTATTAAACAAAA 57.049 34.783 0.26 0.00 0.00 2.44
2931 3070 6.509418 TTCTCAGCGGCTATTAAACAAAAT 57.491 33.333 0.26 0.00 0.00 1.82
2933 3072 7.618502 TCTCAGCGGCTATTAAACAAAATAA 57.381 32.000 0.26 0.00 0.00 1.40
2934 3073 7.693952 TCTCAGCGGCTATTAAACAAAATAAG 58.306 34.615 0.26 0.00 0.00 1.73
2935 3074 7.551262 TCTCAGCGGCTATTAAACAAAATAAGA 59.449 33.333 0.26 0.00 0.00 2.10
2936 3075 7.693952 TCAGCGGCTATTAAACAAAATAAGAG 58.306 34.615 0.26 0.00 0.00 2.85
2937 3076 6.414987 CAGCGGCTATTAAACAAAATAAGAGC 59.585 38.462 0.26 4.75 43.43 4.09
2938 3077 6.094881 AGCGGCTATTAAACAAAATAAGAGCA 59.905 34.615 0.00 0.00 45.04 4.26
2940 3079 6.912591 CGGCTATTAAACAAAATAAGAGCAGG 59.087 38.462 13.02 3.25 45.04 4.85
2941 3080 7.415206 CGGCTATTAAACAAAATAAGAGCAGGT 60.415 37.037 13.02 0.00 45.04 4.00
2964 3208 2.750807 GCACCATCCAGGCATCACTTAT 60.751 50.000 0.00 0.00 43.14 1.73
3038 3283 9.202273 GACACTATTAGGATTTGAGATTGCTAG 57.798 37.037 0.00 0.00 0.00 3.42
3061 3306 2.746277 GCTGTCGCCCGGTTTCAT 60.746 61.111 0.00 0.00 0.00 2.57
3064 3309 0.596082 CTGTCGCCCGGTTTCATTTT 59.404 50.000 0.00 0.00 0.00 1.82
3065 3310 1.000717 CTGTCGCCCGGTTTCATTTTT 60.001 47.619 0.00 0.00 0.00 1.94
3066 3311 2.226912 CTGTCGCCCGGTTTCATTTTTA 59.773 45.455 0.00 0.00 0.00 1.52
3067 3312 2.030981 TGTCGCCCGGTTTCATTTTTAC 60.031 45.455 0.00 0.00 0.00 2.01
3079 3360 8.552034 CGGTTTCATTTTTACTGCCATTTTTAA 58.448 29.630 0.00 0.00 0.00 1.52
3148 3429 6.842807 AGATTTGGGCCATTAGATCAAGAATT 59.157 34.615 7.26 0.00 0.00 2.17
3183 7264 1.478510 GGTCCGATCTTCAGCTTCTCA 59.521 52.381 0.00 0.00 0.00 3.27
3186 7267 2.425312 TCCGATCTTCAGCTTCTCACTC 59.575 50.000 0.00 0.00 0.00 3.51
3232 7313 2.817844 GCTACTCCGGTGGAAATTTTGT 59.182 45.455 8.63 0.00 0.00 2.83
3233 7314 3.254903 GCTACTCCGGTGGAAATTTTGTT 59.745 43.478 8.63 0.00 0.00 2.83
3328 7412 7.411486 AAGACGGATAGATCTGAAGAAAAGA 57.589 36.000 5.18 0.00 36.97 2.52
3370 7454 9.860650 ACCTGCTCATAAACATATATAAACCAA 57.139 29.630 0.00 0.00 0.00 3.67
3527 9903 2.887783 GTGCCTCTGCTACTGCTATCTA 59.112 50.000 0.00 0.00 40.48 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.526970 ACCGCAATTGTCTCTTTGGATAT 58.473 39.130 7.40 0.00 0.00 1.63
27 28 3.950397 ACCGCAATTGTCTCTTTGGATA 58.050 40.909 7.40 0.00 0.00 2.59
40 48 5.957842 TTCTCAAATGTTCTACCGCAATT 57.042 34.783 0.00 0.00 0.00 2.32
57 65 2.058593 TAGCTCGCCTGAGATTCTCA 57.941 50.000 15.39 15.39 45.57 3.27
167 179 2.600731 CTAGCCACACTCTTTCTCGTG 58.399 52.381 0.00 0.00 37.18 4.35
184 196 2.778299 AGGCGACTGAGATCTAGCTAG 58.222 52.381 15.01 15.01 41.13 3.42
185 197 2.940994 AGGCGACTGAGATCTAGCTA 57.059 50.000 0.00 0.00 41.13 3.32
186 198 3.819245 AGGCGACTGAGATCTAGCT 57.181 52.632 0.00 0.00 41.13 3.32
215 227 2.698274 TGTGTCACTTGGCTGAGACTTA 59.302 45.455 4.27 0.00 35.84 2.24
223 235 6.892658 TTTTATATGTTGTGTCACTTGGCT 57.107 33.333 4.27 0.00 0.00 4.75
225 237 9.912634 ATTCTTTTTATATGTTGTGTCACTTGG 57.087 29.630 4.27 0.00 0.00 3.61
263 275 9.121658 TGTGAGATCTTACGTAGAGATTTATGT 57.878 33.333 12.51 1.19 36.02 2.29
303 315 9.832445 AATCTCAGTGACTTAACAAAGTCTTAA 57.168 29.630 16.70 0.00 47.00 1.85
304 316 9.832445 AAATCTCAGTGACTTAACAAAGTCTTA 57.168 29.630 16.70 0.00 47.00 2.10
305 317 8.738645 AAATCTCAGTGACTTAACAAAGTCTT 57.261 30.769 16.70 5.34 47.00 3.01
312 324 7.334421 GGATTGCTAAATCTCAGTGACTTAACA 59.666 37.037 0.00 0.00 41.74 2.41
324 337 4.518211 CCATGACTGGGATTGCTAAATCTC 59.482 45.833 0.00 0.00 42.77 2.75
354 367 2.426024 CGTCTCCATTTTACCCTCTCGA 59.574 50.000 0.00 0.00 0.00 4.04
366 379 2.291043 AAGCCCGACCGTCTCCATT 61.291 57.895 0.00 0.00 0.00 3.16
375 388 2.624364 TCCTTTAAAAACAAGCCCGACC 59.376 45.455 0.00 0.00 0.00 4.79
376 389 3.317149 ACTCCTTTAAAAACAAGCCCGAC 59.683 43.478 0.00 0.00 0.00 4.79
377 390 3.316868 CACTCCTTTAAAAACAAGCCCGA 59.683 43.478 0.00 0.00 0.00 5.14
378 391 3.552068 CCACTCCTTTAAAAACAAGCCCG 60.552 47.826 0.00 0.00 0.00 6.13
379 392 3.639561 TCCACTCCTTTAAAAACAAGCCC 59.360 43.478 0.00 0.00 0.00 5.19
406 419 9.439500 AAACCAAACTTTACTAAAAGGGAAAAC 57.561 29.630 3.19 0.00 45.39 2.43
411 425 9.346005 TCTCTAAACCAAACTTTACTAAAAGGG 57.654 33.333 3.19 0.00 45.39 3.95
494 513 2.230660 GGAGTTGGAGTTGGAGGTTTG 58.769 52.381 0.00 0.00 0.00 2.93
514 533 0.308684 CGAATCGTGCCCATCCATTG 59.691 55.000 0.00 0.00 0.00 2.82
517 536 2.986290 ACGAATCGTGCCCATCCA 59.014 55.556 7.77 0.00 39.18 3.41
786 807 2.365823 CGTCGTTAACCATGGACGG 58.634 57.895 21.47 2.55 46.08 4.79
811 832 4.908687 TGCAGTGCGAGCGGTTGT 62.909 61.111 11.20 0.00 33.85 3.32
812 833 3.372676 GATGCAGTGCGAGCGGTTG 62.373 63.158 11.20 0.00 33.85 3.77
817 838 2.894387 GGGAGATGCAGTGCGAGC 60.894 66.667 11.20 2.61 0.00 5.03
818 839 2.202987 GGGGAGATGCAGTGCGAG 60.203 66.667 11.20 0.00 0.00 5.03
819 840 2.315781 GATGGGGAGATGCAGTGCGA 62.316 60.000 11.20 0.00 0.00 5.10
820 841 1.890979 GATGGGGAGATGCAGTGCG 60.891 63.158 11.20 0.00 0.00 5.34
821 842 1.890979 CGATGGGGAGATGCAGTGC 60.891 63.158 8.58 8.58 0.00 4.40
822 843 0.752658 TACGATGGGGAGATGCAGTG 59.247 55.000 0.00 0.00 0.00 3.66
823 844 1.043816 CTACGATGGGGAGATGCAGT 58.956 55.000 0.00 0.00 0.00 4.40
824 845 0.319728 CCTACGATGGGGAGATGCAG 59.680 60.000 0.00 0.00 0.00 4.41
825 846 1.758440 GCCTACGATGGGGAGATGCA 61.758 60.000 0.00 0.00 0.00 3.96
826 847 1.004440 GCCTACGATGGGGAGATGC 60.004 63.158 0.00 0.00 0.00 3.91
827 848 1.179174 TCGCCTACGATGGGGAGATG 61.179 60.000 12.33 0.00 45.12 2.90
828 849 1.153061 TCGCCTACGATGGGGAGAT 59.847 57.895 12.33 0.00 45.12 2.75
829 850 2.599032 TCGCCTACGATGGGGAGA 59.401 61.111 12.33 3.04 45.12 3.71
837 858 2.473760 GAGCAGAGCTCGCCTACGA 61.474 63.158 21.48 0.00 45.85 3.43
838 859 2.025441 GAGCAGAGCTCGCCTACG 59.975 66.667 21.48 4.87 45.85 3.51
846 867 2.236644 AGATTCACACATGAGCAGAGCT 59.763 45.455 0.00 0.00 43.88 4.09
849 870 2.568509 TGGAGATTCACACATGAGCAGA 59.431 45.455 0.00 0.00 35.83 4.26
852 873 2.543012 CGATGGAGATTCACACATGAGC 59.457 50.000 0.00 0.00 35.83 4.26
909 930 7.396339 GGGAGAAATTTAGGGTTCAAAGTATGT 59.604 37.037 0.00 0.00 0.00 2.29
951 972 3.645286 TGTTAGGGAAACACGCGC 58.355 55.556 5.73 0.00 43.22 6.86
973 994 2.168326 TGACGCTCAAGAAGATGCAA 57.832 45.000 0.00 0.00 0.00 4.08
1335 1356 2.754658 TCGGCGTCCTCCTCTTCC 60.755 66.667 6.85 0.00 0.00 3.46
1395 1416 4.020617 CACCCAGAGGCCAGCGAA 62.021 66.667 5.01 0.00 36.11 4.70
1637 1658 3.730761 GGAAGTGCTGCGGCTGTG 61.731 66.667 20.27 0.00 39.59 3.66
1647 1668 1.772182 CTATGACGATCGGGAAGTGC 58.228 55.000 20.98 0.23 0.00 4.40
1663 1684 3.865929 CTTGATCCGGCGCCGCTAT 62.866 63.158 42.39 34.48 38.24 2.97
1743 1764 1.205064 CTTGCACTCGAACAAGCCG 59.795 57.895 8.92 0.00 37.11 5.52
1956 1977 0.110238 CGTTTGTCCTGGCATCAACG 60.110 55.000 11.03 11.03 0.00 4.10
2193 2214 1.993391 GTGATCCCCTGTCCCCGAA 60.993 63.158 0.00 0.00 0.00 4.30
2256 2277 4.079850 AGAGTGAGCTGCTGGCCG 62.080 66.667 7.01 0.00 43.05 6.13
2262 2283 1.949847 TTAGCCGGAGAGTGAGCTGC 61.950 60.000 5.05 0.00 36.79 5.25
2368 2389 2.358003 GTGCAGCGAGCTGGTTCT 60.358 61.111 24.25 0.00 45.94 3.01
2406 2427 2.512515 GCCGCTGGCTGGAAGTAG 60.513 66.667 11.61 0.00 46.69 2.57
2692 2715 2.766263 TCAGGTTCAGTCACTTCAGTGT 59.234 45.455 6.84 0.00 45.76 3.55
2711 2734 1.000843 CCATCTCACTGTGTCGGTTCA 59.999 52.381 7.79 0.00 0.00 3.18
2720 2743 5.191426 ACGTACTATGTACCATCTCACTGT 58.809 41.667 0.00 0.00 0.00 3.55
2722 2745 6.120905 AGAACGTACTATGTACCATCTCACT 58.879 40.000 0.00 0.00 0.00 3.41
2723 2746 6.374565 AGAACGTACTATGTACCATCTCAC 57.625 41.667 0.00 0.00 0.00 3.51
2741 2877 9.672086 TTAGTTCATCAAAATAACCAAAGAACG 57.328 29.630 0.00 0.00 38.21 3.95
2851 2990 5.863397 GCCGGTGCAAATTACGTACTATATA 59.137 40.000 1.90 0.00 37.47 0.86
2852 2991 4.687483 GCCGGTGCAAATTACGTACTATAT 59.313 41.667 1.90 0.00 37.47 0.86
2853 2992 4.050553 GCCGGTGCAAATTACGTACTATA 58.949 43.478 1.90 0.00 37.47 1.31
2854 2993 2.867975 GCCGGTGCAAATTACGTACTAT 59.132 45.455 1.90 0.00 37.47 2.12
2940 3079 0.966875 TGATGCCTGGATGGTGCAAC 60.967 55.000 0.00 0.00 38.69 4.17
2941 3080 0.966875 GTGATGCCTGGATGGTGCAA 60.967 55.000 0.00 0.00 38.69 4.08
2964 3208 4.562767 TGATATAAGCACTAAGGGGGACA 58.437 43.478 0.00 0.00 0.00 4.02
3009 3254 5.592104 TCTCAAATCCTAATAGTGTCGCA 57.408 39.130 0.00 0.00 0.00 5.10
3016 3261 7.543868 CCGACTAGCAATCTCAAATCCTAATAG 59.456 40.741 0.00 0.00 0.00 1.73
3057 3302 9.823647 TGTCTTAAAAATGGCAGTAAAAATGAA 57.176 25.926 0.00 0.00 0.00 2.57
3066 3311 9.260002 CAATTTTACTGTCTTAAAAATGGCAGT 57.740 29.630 5.58 5.58 39.93 4.40
3067 3312 9.474920 TCAATTTTACTGTCTTAAAAATGGCAG 57.525 29.630 0.00 0.00 34.58 4.85
3079 3360 7.839680 AGGATTGGTTTCAATTTTACTGTCT 57.160 32.000 0.00 0.00 43.08 3.41
3090 3371 4.042809 TGAGAAGGCTAGGATTGGTTTCAA 59.957 41.667 0.00 0.00 37.28 2.69
3183 7264 4.008933 GACAGCGGCCCAGTGAGT 62.009 66.667 0.00 0.00 0.00 3.41
3186 7267 4.641645 TTGGACAGCGGCCCAGTG 62.642 66.667 0.00 0.00 33.43 3.66
3232 7313 1.747145 CAAATGCACCACAGGCCAA 59.253 52.632 5.01 0.00 0.00 4.52
3233 7314 2.208619 CCAAATGCACCACAGGCCA 61.209 57.895 5.01 0.00 0.00 5.36
3328 7412 5.891551 TGAGCAGGTAGGAAGTTTTCTTTTT 59.108 36.000 0.00 0.00 40.61 1.94
3370 7454 3.560068 GGCTACACGCAAGCATATAGTTT 59.440 43.478 6.58 0.00 41.93 2.66
3381 7465 2.773487 ACATTTGTAGGCTACACGCAA 58.227 42.857 26.21 18.16 41.67 4.85
3392 7476 9.651913 AAGGTTTGGCAATATTAACATTTGTAG 57.348 29.630 0.00 0.00 0.00 2.74
3394 7478 7.094848 GCAAGGTTTGGCAATATTAACATTTGT 60.095 33.333 0.00 0.00 0.00 2.83
3527 9903 8.217799 TGACAGCTTATTATTAAGGCAATAGGT 58.782 33.333 6.54 0.00 36.18 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.