Multiple sequence alignment - TraesCS2A01G412500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G412500 chr2A 100.000 8022 0 0 1 8022 670108300 670116321 0.000000e+00 14814.0
1 TraesCS2A01G412500 chr2A 84.011 713 93 17 1201 1901 669865444 669866147 0.000000e+00 665.0
2 TraesCS2A01G412500 chr2A 77.657 461 74 16 6089 6533 669867529 669867976 3.720000e-63 254.0
3 TraesCS2A01G412500 chr2A 92.254 142 10 1 6579 6720 604991511 604991651 4.910000e-47 200.0
4 TraesCS2A01G412500 chr2A 84.483 174 27 0 1131 1304 669879078 669879251 1.070000e-38 172.0
5 TraesCS2A01G412500 chr2A 83.152 184 31 0 5760 5943 669867285 669867468 1.380000e-37 169.0
6 TraesCS2A01G412500 chr2A 83.152 184 31 0 5760 5943 669885978 669886161 1.380000e-37 169.0
7 TraesCS2A01G412500 chr2D 94.274 2026 81 15 3242 5235 524396480 524398502 0.000000e+00 3066.0
8 TraesCS2A01G412500 chr2D 91.698 1867 111 15 1366 3228 524394228 524396054 0.000000e+00 2549.0
9 TraesCS2A01G412500 chr2D 91.467 1629 98 17 4960 6579 524516367 524517963 0.000000e+00 2200.0
10 TraesCS2A01G412500 chr2D 88.445 1376 87 30 6704 8022 524517960 524519320 0.000000e+00 1594.0
11 TraesCS2A01G412500 chr2D 83.123 1825 154 69 1177 2941 524443128 524444858 0.000000e+00 1522.0
12 TraesCS2A01G412500 chr2D 86.744 1388 130 29 1365 2738 524466891 524468238 0.000000e+00 1495.0
13 TraesCS2A01G412500 chr2D 82.222 1170 149 29 3229 4344 524514603 524515767 0.000000e+00 953.0
14 TraesCS2A01G412500 chr2D 86.979 768 49 21 5239 5974 524398666 524399414 0.000000e+00 817.0
15 TraesCS2A01G412500 chr2D 80.457 1182 135 49 3229 4344 524445087 524446238 0.000000e+00 815.0
16 TraesCS2A01G412500 chr2D 93.584 452 17 6 583 1025 524390680 524391128 0.000000e+00 664.0
17 TraesCS2A01G412500 chr2D 78.816 963 146 42 1175 2107 524152160 524153094 5.360000e-166 595.0
18 TraesCS2A01G412500 chr2D 88.176 499 41 12 6077 6558 524448503 524449000 5.400000e-161 579.0
19 TraesCS2A01G412500 chr2D 87.327 505 53 6 5447 5944 524447355 524447855 1.170000e-157 568.0
20 TraesCS2A01G412500 chr2D 88.791 455 45 4 4962 5413 524446829 524447280 3.270000e-153 553.0
21 TraesCS2A01G412500 chr2D 86.179 492 57 9 6077 6558 524399435 524399925 9.230000e-144 521.0
22 TraesCS2A01G412500 chr2D 86.709 474 29 13 1177 1624 524462145 524462610 5.590000e-136 496.0
23 TraesCS2A01G412500 chr2D 96.043 278 9 2 1006 1281 524393833 524394110 1.230000e-122 451.0
24 TraesCS2A01G412500 chr2D 78.202 445 68 19 6107 6533 524154306 524154739 2.870000e-64 257.0
25 TraesCS2A01G412500 chr2D 85.317 252 29 5 2743 2990 524514048 524514295 3.720000e-63 254.0
26 TraesCS2A01G412500 chr2D 72.056 934 204 36 5041 5943 524153275 524154182 8.100000e-55 226.0
27 TraesCS2A01G412500 chr2D 85.714 217 24 3 4645 4857 524446378 524446591 1.050000e-53 222.0
28 TraesCS2A01G412500 chr2D 84.793 217 21 7 4646 4857 524515908 524516117 2.930000e-49 207.0
29 TraesCS2A01G412500 chr2D 87.117 163 21 0 1116 1278 524466606 524466768 1.370000e-42 185.0
30 TraesCS2A01G412500 chr2D 81.897 232 27 9 794 1024 524466347 524466564 1.780000e-41 182.0
31 TraesCS2A01G412500 chr2B 87.384 1395 91 34 4633 5974 620212967 620214329 0.000000e+00 1522.0
32 TraesCS2A01G412500 chr2B 86.330 1368 109 35 6703 8022 620276023 620277360 0.000000e+00 1419.0
33 TraesCS2A01G412500 chr2B 89.165 1006 70 15 5594 6579 620275041 620276027 0.000000e+00 1218.0
34 TraesCS2A01G412500 chr2B 85.199 1081 121 21 1926 2990 620194676 620195733 0.000000e+00 1074.0
35 TraesCS2A01G412500 chr2B 84.455 862 106 19 1353 2199 620242084 620242932 0.000000e+00 824.0
36 TraesCS2A01G412500 chr2B 91.696 578 44 4 7 581 71305832 71305256 0.000000e+00 798.0
37 TraesCS2A01G412500 chr2B 86.056 753 80 17 3898 4633 620197157 620197901 0.000000e+00 785.0
38 TraesCS2A01G412500 chr2B 91.481 540 31 6 1366 1905 620194080 620194604 0.000000e+00 728.0
39 TraesCS2A01G412500 chr2B 81.407 796 108 29 1116 1901 619755022 619755787 1.480000e-171 614.0
40 TraesCS2A01G412500 chr2B 84.296 554 70 12 1365 1914 620023921 620024461 7.130000e-145 525.0
41 TraesCS2A01G412500 chr2B 83.976 493 54 14 6077 6545 620214350 620214841 4.420000e-122 449.0
42 TraesCS2A01G412500 chr2B 79.909 657 90 21 3270 3899 620196112 620196753 2.050000e-120 444.0
43 TraesCS2A01G412500 chr2B 84.043 376 27 15 5019 5391 620274486 620274831 1.670000e-86 331.0
44 TraesCS2A01G412500 chr2B 78.801 467 69 19 6089 6537 619757230 619757684 3.660000e-73 287.0
45 TraesCS2A01G412500 chr2B 76.623 462 88 12 7005 7448 741361660 741361201 3.740000e-58 237.0
46 TraesCS2A01G412500 chr2B 89.266 177 16 2 1116 1290 620023647 620023822 1.360000e-52 219.0
47 TraesCS2A01G412500 chr2B 94.815 135 7 0 6574 6708 171995531 171995397 2.270000e-50 211.0
48 TraesCS2A01G412500 chr2B 95.455 132 6 0 6576 6707 590923789 590923658 2.270000e-50 211.0
49 TraesCS2A01G412500 chr2B 95.420 131 6 0 6579 6709 89552373 89552503 8.160000e-50 209.0
50 TraesCS2A01G412500 chr2B 75.269 465 86 14 7005 7447 369540724 369541181 2.280000e-45 195.0
51 TraesCS2A01G412500 chr2B 84.239 184 29 0 5760 5943 619756934 619757117 6.400000e-41 180.0
52 TraesCS2A01G412500 chr2B 93.860 114 7 0 1177 1290 620232330 620232443 1.070000e-38 172.0
53 TraesCS2A01G412500 chr2B 80.208 192 17 9 3038 3228 620195725 620195896 3.040000e-24 124.0
54 TraesCS2A01G412500 chr2B 100.000 58 0 0 5447 5504 620274984 620275041 3.060000e-19 108.0
55 TraesCS2A01G412500 chr2B 92.453 53 4 0 6012 6064 797419326 797419274 8.630000e-10 76.8
56 TraesCS2A01G412500 chr2B 100.000 29 0 0 7419 7447 779191711 779191739 4.000000e-03 54.7
57 TraesCS2A01G412500 chr1D 92.188 576 43 2 7 581 42098224 42097650 0.000000e+00 813.0
58 TraesCS2A01G412500 chr1D 81.210 314 54 5 7004 7316 56896590 56896281 1.730000e-61 248.0
59 TraesCS2A01G412500 chr5A 91.781 584 45 3 1 582 34750893 34751475 0.000000e+00 809.0
60 TraesCS2A01G412500 chr5A 94.776 134 7 0 6572 6705 688512353 688512220 8.160000e-50 209.0
61 TraesCS2A01G412500 chr5A 95.349 129 6 0 6578 6706 426273343 426273215 1.060000e-48 206.0
62 TraesCS2A01G412500 chr1A 91.781 584 44 4 1 582 351866608 351866027 0.000000e+00 809.0
63 TraesCS2A01G412500 chr1A 80.192 313 59 2 7004 7316 56324931 56325240 1.740000e-56 231.0
64 TraesCS2A01G412500 chr1A 83.333 102 16 1 7350 7451 21420419 21420319 8.570000e-15 93.5
65 TraesCS2A01G412500 chr4B 91.696 578 44 4 7 581 70108548 70107972 0.000000e+00 798.0
66 TraesCS2A01G412500 chr4B 91.111 585 46 5 8 589 398518394 398518975 0.000000e+00 787.0
67 TraesCS2A01G412500 chr4B 94.340 53 3 0 6012 6064 636168109 636168057 1.860000e-11 82.4
68 TraesCS2A01G412500 chr1B 91.667 576 47 1 7 581 626604940 626604365 0.000000e+00 797.0
69 TraesCS2A01G412500 chr1B 94.161 137 8 0 6572 6708 102142261 102142125 8.160000e-50 209.0
70 TraesCS2A01G412500 chr5B 91.652 575 42 6 10 581 546124903 546124332 0.000000e+00 791.0
71 TraesCS2A01G412500 chr5B 76.739 460 79 16 7005 7444 72300358 72300809 1.740000e-56 231.0
72 TraesCS2A01G412500 chr5B 92.453 53 4 0 6012 6064 505219835 505219783 8.630000e-10 76.8
73 TraesCS2A01G412500 chr7A 91.096 584 49 3 1 582 34186707 34187289 0.000000e+00 787.0
74 TraesCS2A01G412500 chr7A 79.944 354 64 7 7005 7355 459791715 459792064 3.720000e-63 254.0
75 TraesCS2A01G412500 chr7A 77.364 349 69 9 7012 7355 645283521 645283178 1.770000e-46 198.0
76 TraesCS2A01G412500 chr7A 84.043 94 13 2 7350 7442 222492113 222492021 1.110000e-13 89.8
77 TraesCS2A01G412500 chr6D 77.516 467 76 20 7005 7448 4401742 4401282 3.720000e-63 254.0
78 TraesCS2A01G412500 chr6D 82.394 284 44 3 7005 7284 449153649 449153930 8.040000e-60 243.0
79 TraesCS2A01G412500 chr6D 90.909 55 4 1 6010 6064 122734276 122734329 1.120000e-08 73.1
80 TraesCS2A01G412500 chr7D 79.739 306 56 4 7007 7312 561098774 561098475 4.880000e-52 217.0
81 TraesCS2A01G412500 chr6B 95.522 134 6 0 6577 6710 706167522 706167389 1.750000e-51 215.0
82 TraesCS2A01G412500 chr4A 95.489 133 5 1 6574 6706 678240325 678240456 2.270000e-50 211.0
83 TraesCS2A01G412500 chr4A 92.593 54 2 2 6012 6064 430870531 430870583 8.630000e-10 76.8
84 TraesCS2A01G412500 chr3B 78.244 262 40 14 6108 6358 571753189 571753444 1.390000e-32 152.0
85 TraesCS2A01G412500 chr3B 94.340 53 2 1 6012 6064 43825454 43825403 6.670000e-11 80.5
86 TraesCS2A01G412500 chr3A 76.981 265 40 14 6108 6358 574453345 574453602 1.820000e-26 132.0
87 TraesCS2A01G412500 chr3A 88.776 98 11 0 7350 7447 316564663 316564566 3.930000e-23 121.0
88 TraesCS2A01G412500 chr3D 85.714 119 17 0 6108 6226 435647963 435648081 8.450000e-25 126.0
89 TraesCS2A01G412500 chr3D 85.455 110 16 0 5079 5188 435646866 435646975 1.830000e-21 115.0
90 TraesCS2A01G412500 chr3D 94.444 54 2 1 6012 6064 150798740 150798687 1.860000e-11 82.4
91 TraesCS2A01G412500 chr6A 87.755 98 12 0 7350 7447 315402638 315402735 1.830000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G412500 chr2A 670108300 670116321 8021 False 14814.000000 14814 100.000000 1 8022 1 chr2A.!!$F4 8021
1 TraesCS2A01G412500 chr2A 669865444 669867976 2532 False 362.666667 665 81.606667 1201 6533 3 chr2A.!!$F5 5332
2 TraesCS2A01G412500 chr2D 524390680 524399925 9245 False 1344.666667 3066 91.459500 583 6558 6 chr2D.!!$F2 5975
3 TraesCS2A01G412500 chr2D 524514048 524519320 5272 False 1041.600000 2200 86.448800 2743 8022 5 chr2D.!!$F5 5279
4 TraesCS2A01G412500 chr2D 524443128 524449000 5872 False 709.833333 1522 85.598000 1177 6558 6 chr2D.!!$F3 5381
5 TraesCS2A01G412500 chr2D 524462145 524468238 6093 False 589.500000 1495 85.616750 794 2738 4 chr2D.!!$F4 1944
6 TraesCS2A01G412500 chr2D 524152160 524154739 2579 False 359.333333 595 76.358000 1175 6533 3 chr2D.!!$F1 5358
7 TraesCS2A01G412500 chr2B 620212967 620214841 1874 False 985.500000 1522 85.680000 4633 6545 2 chr2B.!!$F9 1912
8 TraesCS2A01G412500 chr2B 620242084 620242932 848 False 824.000000 824 84.455000 1353 2199 1 chr2B.!!$F4 846
9 TraesCS2A01G412500 chr2B 71305256 71305832 576 True 798.000000 798 91.696000 7 581 1 chr2B.!!$R1 574
10 TraesCS2A01G412500 chr2B 620274486 620277360 2874 False 769.000000 1419 89.884500 5019 8022 4 chr2B.!!$F10 3003
11 TraesCS2A01G412500 chr2B 620194080 620197901 3821 False 631.000000 1074 84.570600 1366 4633 5 chr2B.!!$F8 3267
12 TraesCS2A01G412500 chr2B 620023647 620024461 814 False 372.000000 525 86.781000 1116 1914 2 chr2B.!!$F7 798
13 TraesCS2A01G412500 chr2B 619755022 619757684 2662 False 360.333333 614 81.482333 1116 6537 3 chr2B.!!$F6 5421
14 TraesCS2A01G412500 chr1D 42097650 42098224 574 True 813.000000 813 92.188000 7 581 1 chr1D.!!$R1 574
15 TraesCS2A01G412500 chr5A 34750893 34751475 582 False 809.000000 809 91.781000 1 582 1 chr5A.!!$F1 581
16 TraesCS2A01G412500 chr1A 351866027 351866608 581 True 809.000000 809 91.781000 1 582 1 chr1A.!!$R2 581
17 TraesCS2A01G412500 chr4B 70107972 70108548 576 True 798.000000 798 91.696000 7 581 1 chr4B.!!$R1 574
18 TraesCS2A01G412500 chr4B 398518394 398518975 581 False 787.000000 787 91.111000 8 589 1 chr4B.!!$F1 581
19 TraesCS2A01G412500 chr1B 626604365 626604940 575 True 797.000000 797 91.667000 7 581 1 chr1B.!!$R2 574
20 TraesCS2A01G412500 chr5B 546124332 546124903 571 True 791.000000 791 91.652000 10 581 1 chr5B.!!$R2 571
21 TraesCS2A01G412500 chr7A 34186707 34187289 582 False 787.000000 787 91.096000 1 582 1 chr7A.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 561 1.517242 GTCCTCGGATGATCAATGGC 58.483 55.0 0.00 0.00 0.00 4.40 F
1070 7205 0.307760 AAACGGAGCAACTCGCAAAG 59.692 50.0 0.00 0.00 46.13 2.77 F
1694 7926 0.608130 CTCATGGACCAAGGTCGTCA 59.392 55.0 12.77 6.88 45.41 4.35 F
2119 8491 1.429463 CAAGGTACGGACACTTGCTC 58.571 55.0 13.76 0.00 35.70 4.26 F
2665 9065 0.322546 GGTCCCATCCAAGTCACCAC 60.323 60.0 0.00 0.00 0.00 4.16 F
2666 9066 0.322546 GTCCCATCCAAGTCACCACC 60.323 60.0 0.00 0.00 0.00 4.61 F
3831 10691 0.831307 ACCGCCAAGGGTAGATCTTC 59.169 55.0 0.00 0.00 46.96 2.87 F
5609 13486 0.611896 AAATGGGGAAACGGCTGGAG 60.612 55.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 8289 0.391528 GGCAATCAATGGGTGGCAAC 60.392 55.000 0.00 0.00 37.73 4.17 R
1981 8352 0.600255 CTGGACAAGGTCACGTGGAC 60.600 60.000 17.00 12.21 46.20 4.02 R
2652 9052 0.850100 TGTTGGGTGGTGACTTGGAT 59.150 50.000 0.00 0.00 0.00 3.41 R
3487 10323 1.212935 CTCCTATTCAACCACCCCCAG 59.787 57.143 0.00 0.00 0.00 4.45 R
4166 11457 0.605083 CCTATAGGCATGCTCGCTCA 59.395 55.000 18.92 0.00 0.00 4.26 R
4182 11497 1.078823 ACACCTCCCACTCACATCCTA 59.921 52.381 0.00 0.00 0.00 2.94 R
5698 13598 0.035439 ATCGGGTTGGTGGCTTAGTG 60.035 55.000 0.00 0.00 0.00 2.74 R
7039 15539 0.179000 AATCGCTACTCCCAAGCCAG 59.821 55.000 0.00 0.00 36.60 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.228636 GAAAAACTTAATTTTGCTCGAGTGTTA 57.771 29.630 15.13 4.01 39.70 2.41
46 47 7.254227 ACTTAATTTTGCTCGAGTGTTAACA 57.746 32.000 15.13 3.59 0.00 2.41
142 143 3.065371 CGGGATAAACTCAAGTCCAATGC 59.935 47.826 0.00 0.00 32.31 3.56
155 156 5.886960 AGTCCAATGCACATAGAAGTTTC 57.113 39.130 0.00 0.00 0.00 2.78
161 162 6.207928 CAATGCACATAGAAGTTTCACACAA 58.792 36.000 0.00 0.00 0.00 3.33
220 221 4.873827 GTGGAGTTTGTTAGAGTTGTGTCA 59.126 41.667 0.00 0.00 0.00 3.58
294 295 4.293494 ACATAGGATGTGGAGTCATGTCT 58.707 43.478 0.00 0.00 43.01 3.41
323 324 3.707102 GACACTTGTATCCTAGGCCTCTT 59.293 47.826 9.68 0.00 0.00 2.85
336 337 5.419471 CCTAGGCCTCTTTTATATAGCGAGT 59.581 44.000 9.68 0.00 0.00 4.18
348 349 5.798015 ATATAGCGAGTATAGACACACGG 57.202 43.478 0.00 0.00 0.00 4.94
379 380 7.105588 CCTATGCCAATATAATAGCACAGACA 58.894 38.462 2.17 0.00 38.21 3.41
484 487 2.768344 CAGGCCCGGGGATGTAGT 60.768 66.667 25.28 0.00 0.00 2.73
523 526 4.089493 CGTTAACAAATCTCGATGTCGTGT 59.911 41.667 6.39 0.00 40.80 4.49
558 561 1.517242 GTCCTCGGATGATCAATGGC 58.483 55.000 0.00 0.00 0.00 4.40
575 579 4.942761 ATGGCATGCCTCGAATTTATTT 57.057 36.364 35.53 0.00 36.94 1.40
578 582 5.830912 TGGCATGCCTCGAATTTATTTTAG 58.169 37.500 35.53 0.00 36.94 1.85
716 721 7.569408 CGTCTATGATATTGTACATGTTGTGCC 60.569 40.741 2.30 0.00 31.71 5.01
779 784 5.298276 GTGATGACTTATCTCGAGAGAACCT 59.702 44.000 21.52 8.02 41.36 3.50
780 785 5.888724 TGATGACTTATCTCGAGAGAACCTT 59.111 40.000 21.52 12.11 41.36 3.50
781 786 5.821516 TGACTTATCTCGAGAGAACCTTC 57.178 43.478 21.52 15.53 41.36 3.46
782 787 5.502079 TGACTTATCTCGAGAGAACCTTCT 58.498 41.667 21.52 3.64 41.36 2.85
911 4321 7.177744 TGAGTGGTGACATGTTAACAGAGTATA 59.822 37.037 8.87 5.60 46.14 1.47
986 4396 3.063180 CGATTGTTCTTCTGCTGCCTTAG 59.937 47.826 0.00 0.00 0.00 2.18
1034 7169 0.901124 AAGCAGTAGGTCTCAGCCTG 59.099 55.000 0.00 0.00 39.60 4.85
1070 7205 0.307760 AAACGGAGCAACTCGCAAAG 59.692 50.000 0.00 0.00 46.13 2.77
1210 7365 2.743928 CGCAGCCTCCAGTTCCAC 60.744 66.667 0.00 0.00 0.00 4.02
1527 7744 5.773239 TCGAGATCGGTACATTTTGTTTC 57.227 39.130 1.91 0.00 40.29 2.78
1694 7926 0.608130 CTCATGGACCAAGGTCGTCA 59.392 55.000 12.77 6.88 45.41 4.35
1736 7979 1.540363 GCAGCTAGCCAATTAGCCGTA 60.540 52.381 12.13 0.00 45.69 4.02
1737 7980 2.872038 GCAGCTAGCCAATTAGCCGTAT 60.872 50.000 12.13 0.00 45.69 3.06
1739 7986 4.566004 CAGCTAGCCAATTAGCCGTATTA 58.434 43.478 12.13 0.00 45.69 0.98
1743 7990 5.163854 GCTAGCCAATTAGCCGTATTACATG 60.164 44.000 2.29 0.00 40.10 3.21
1777 8054 2.151202 CTGTATTGACCGTTGCAGGTT 58.849 47.619 0.00 0.00 46.09 3.50
1859 8136 3.621682 AAGGTTACCATGTTGGGGAAA 57.378 42.857 3.51 0.00 43.37 3.13
1877 8154 4.101741 GGGAAATATCTACCTCACTGCAGT 59.898 45.833 15.25 15.25 0.00 4.40
1981 8352 3.529533 CTGCATCTTCCTTACTGTCTGG 58.470 50.000 0.00 0.00 0.00 3.86
2042 8414 7.070571 CCCAAGTTTCTATCAAGTCCTCTCTAT 59.929 40.741 0.00 0.00 0.00 1.98
2073 8445 5.815740 GGAGACTCGTATGCTGGAAAAATTA 59.184 40.000 0.00 0.00 0.00 1.40
2119 8491 1.429463 CAAGGTACGGACACTTGCTC 58.571 55.000 13.76 0.00 35.70 4.26
2171 8543 7.516155 GCATGCGTTTATAGTCGACTAAATTCA 60.516 37.037 27.90 19.70 31.39 2.57
2187 8559 8.006298 ACTAAATTCACTGATTTCACCACAAA 57.994 30.769 0.00 0.00 31.96 2.83
2204 8576 3.569701 CACAAAGGTAAATGTGGTGAGCT 59.430 43.478 0.00 0.00 42.46 4.09
2209 8581 5.700402 AGGTAAATGTGGTGAGCTATCTT 57.300 39.130 0.00 0.00 0.00 2.40
2211 8583 7.380423 AGGTAAATGTGGTGAGCTATCTTAT 57.620 36.000 0.00 0.00 0.00 1.73
2212 8584 7.806180 AGGTAAATGTGGTGAGCTATCTTATT 58.194 34.615 0.00 0.00 0.00 1.40
2213 8585 8.275040 AGGTAAATGTGGTGAGCTATCTTATTT 58.725 33.333 0.00 0.00 0.00 1.40
2377 8764 6.809196 CCTCACAATTCTACACAAGAGACTAC 59.191 42.308 0.00 0.00 35.05 2.73
2443 8837 4.319477 GCATCACAAATGTGTACGTGAAGT 60.319 41.667 12.87 0.00 45.76 3.01
2635 9035 2.421952 CCCATGTGTCAGGGTCATTAGG 60.422 54.545 0.00 0.00 40.34 2.69
2651 9051 6.415573 GTCATTAGGTTATATCATGGGTCCC 58.584 44.000 0.00 0.00 0.00 4.46
2652 9052 6.012858 GTCATTAGGTTATATCATGGGTCCCA 60.013 42.308 14.64 14.64 38.19 4.37
2665 9065 0.322546 GGTCCCATCCAAGTCACCAC 60.323 60.000 0.00 0.00 0.00 4.16
2666 9066 0.322546 GTCCCATCCAAGTCACCACC 60.323 60.000 0.00 0.00 0.00 4.61
2667 9067 1.000896 CCCATCCAAGTCACCACCC 60.001 63.158 0.00 0.00 0.00 4.61
2668 9068 1.767036 CCATCCAAGTCACCACCCA 59.233 57.895 0.00 0.00 0.00 4.51
2676 9076 3.420893 CAAGTCACCACCCAACACATAT 58.579 45.455 0.00 0.00 0.00 1.78
2686 9086 5.139727 CACCCAACACATATACATCCCAAT 58.860 41.667 0.00 0.00 0.00 3.16
2741 9143 4.577693 CAGCTAACACATGTGCATCCTTAT 59.422 41.667 25.68 0.17 0.00 1.73
2750 9152 6.257849 CACATGTGCATCCTTATAAGTACGTT 59.742 38.462 13.94 0.00 0.00 3.99
2783 9185 5.163754 GGAAACAAATAAGAGGATGGTGTCG 60.164 44.000 0.00 0.00 0.00 4.35
2893 9301 7.899178 TTTATCTCTCTCGTGTGCAAATTTA 57.101 32.000 0.00 0.00 0.00 1.40
3011 9421 6.114089 GCATATCACTTGCTATCATCTCCAT 58.886 40.000 0.00 0.00 37.14 3.41
3053 9463 8.977412 TCACTGTCTATATGTACAATGAAAGGA 58.023 33.333 0.00 0.00 29.71 3.36
3065 9475 8.801299 TGTACAATGAAAGGAAGCAATAAATCA 58.199 29.630 0.00 0.00 0.00 2.57
3070 9480 9.558396 AATGAAAGGAAGCAATAAATCAACAAA 57.442 25.926 0.00 0.00 0.00 2.83
3164 9574 8.620416 GTGTTATGCCACATAATATTGTCTTCA 58.380 33.333 0.00 0.00 35.38 3.02
3168 9578 5.589855 TGCCACATAATATTGTCTTCAGTGG 59.410 40.000 11.88 11.88 45.03 4.00
3419 10251 1.613836 CAACTGCTTCCTGCTTCCTT 58.386 50.000 0.00 0.00 43.37 3.36
3487 10323 3.007398 AGGATGAAGGATGTCGATTAGGC 59.993 47.826 0.00 0.00 0.00 3.93
3627 10482 3.883489 AGCAAGAAAAAGGTCACCACTAC 59.117 43.478 0.00 0.00 0.00 2.73
3690 10546 6.024049 GCTCGGAGTCAATGTTGATTAAAAG 58.976 40.000 6.90 0.00 39.73 2.27
3831 10691 0.831307 ACCGCCAAGGGTAGATCTTC 59.169 55.000 0.00 0.00 46.96 2.87
3870 10730 6.269769 TCTTTACAAATTCTTGGGGCAAATCT 59.730 34.615 0.00 0.00 36.82 2.40
3883 10743 5.136105 GGGGCAAATCTAGATCTTTGATGT 58.864 41.667 18.72 0.00 34.93 3.06
3954 11219 4.396166 AGGTATGAAAACTGAGCGGAAATG 59.604 41.667 0.00 0.00 0.00 2.32
3970 11235 5.391523 GCGGAAATGTATGAAGCAAGTGTTA 60.392 40.000 0.00 0.00 0.00 2.41
4139 11427 7.414436 CACAACCATATAGAAAAATACACCCG 58.586 38.462 0.00 0.00 0.00 5.28
4182 11497 1.403382 CGTATGAGCGAGCATGCCTAT 60.403 52.381 15.66 0.00 34.65 2.57
4307 11635 0.688749 GGCTGGGATGAAATGGGCTT 60.689 55.000 0.00 0.00 0.00 4.35
4451 11779 8.561212 TAATGTAAATTCCATTTCCGATTACGG 58.439 33.333 8.18 0.00 44.53 4.02
4540 11872 2.819608 AGCATGTAAACCCACACACATC 59.180 45.455 0.00 0.00 29.31 3.06
4615 11947 7.565323 TGTAATCATTGCATTGCTATGTACA 57.435 32.000 25.25 23.06 41.17 2.90
4755 12094 1.918609 GACGAAGCATAGACAACGGAC 59.081 52.381 0.00 0.00 0.00 4.79
4783 12122 4.706842 AACTATGCCTAACCGGATCATT 57.293 40.909 9.46 0.00 33.16 2.57
4825 12164 7.964604 ACCATTTTAGCCGATATAGAACTTC 57.035 36.000 0.00 0.00 0.00 3.01
4888 12299 5.572896 GCAGTTTTAATAAGCACACCATGTC 59.427 40.000 0.00 0.00 0.00 3.06
4937 12348 5.957771 AATTATCTCTACTCAGCAACCCA 57.042 39.130 0.00 0.00 0.00 4.51
4965 12376 6.358118 TCCAATATTTTCGTAGCATGTGTC 57.642 37.500 0.00 0.00 0.00 3.67
5023 12540 7.063934 AGCAGTATATACCTCCTTTTGGTAC 57.936 40.000 9.32 0.00 42.12 3.34
5078 12597 6.567687 TGTTTATGTTCATTTCGTCACCAT 57.432 33.333 0.00 0.00 0.00 3.55
5088 12607 2.375014 TCGTCACCATCAGGGCTATA 57.625 50.000 0.00 0.00 42.05 1.31
5213 12734 4.884961 ACCTCACCTGTATCCACTATTCT 58.115 43.478 0.00 0.00 0.00 2.40
5214 12735 5.281314 ACCTCACCTGTATCCACTATTCTT 58.719 41.667 0.00 0.00 0.00 2.52
5417 13158 6.239345 CGATAGCCAGGATAACTTTTACTCCT 60.239 42.308 0.00 0.00 38.68 3.69
5609 13486 0.611896 AAATGGGGAAACGGCTGGAG 60.612 55.000 0.00 0.00 0.00 3.86
5698 13598 0.887933 ATGTGTTCCCCGTTCATTGC 59.112 50.000 0.00 0.00 0.00 3.56
5702 13602 1.072489 TGTTCCCCGTTCATTGCACTA 59.928 47.619 0.00 0.00 0.00 2.74
5703 13603 2.156098 GTTCCCCGTTCATTGCACTAA 58.844 47.619 0.00 0.00 0.00 2.24
5704 13604 2.107950 TCCCCGTTCATTGCACTAAG 57.892 50.000 0.00 0.00 0.00 2.18
5707 13607 1.164411 CCGTTCATTGCACTAAGCCA 58.836 50.000 0.00 0.00 44.83 4.75
5708 13608 1.135689 CCGTTCATTGCACTAAGCCAC 60.136 52.381 0.00 0.00 44.83 5.01
5709 13609 1.135689 CGTTCATTGCACTAAGCCACC 60.136 52.381 0.00 0.00 44.83 4.61
5710 13610 1.885887 GTTCATTGCACTAAGCCACCA 59.114 47.619 0.00 0.00 44.83 4.17
5800 13705 4.194720 GACGAGCGCACCCGAGAT 62.195 66.667 20.42 1.77 36.29 2.75
5845 13750 2.207924 GGACGAGTGGGTGAGGTGT 61.208 63.158 0.00 0.00 0.00 4.16
6164 14585 4.394712 CAGGCGTGGGTGAGGTCC 62.395 72.222 0.00 0.00 0.00 4.46
6248 14677 5.926214 TCGTCATCGTTTCATTTTGGTTA 57.074 34.783 0.00 0.00 38.33 2.85
6250 14679 5.467399 TCGTCATCGTTTCATTTTGGTTACT 59.533 36.000 0.00 0.00 38.33 2.24
6387 14852 0.946221 CCACCTTCTCTGCGTGTGTC 60.946 60.000 0.00 0.00 0.00 3.67
6487 14960 1.454201 CTGAGTACGAGCCTGACAGA 58.546 55.000 3.32 0.00 0.00 3.41
6558 15031 7.917505 GCCTATTTGTATTCTCCATTGTGAAAG 59.082 37.037 0.00 0.00 0.00 2.62
6568 15041 7.265599 TCTCCATTGTGAAAGATAAACCCTA 57.734 36.000 0.00 0.00 0.00 3.53
6571 15044 7.410174 TCCATTGTGAAAGATAAACCCTACAT 58.590 34.615 0.00 0.00 0.00 2.29
6583 15056 9.531158 AGATAAACCCTACATATGTAGTACTCC 57.469 37.037 31.46 18.24 44.88 3.85
6584 15057 6.990908 AAACCCTACATATGTAGTACTCCC 57.009 41.667 31.46 0.00 44.88 4.30
6585 15058 5.944809 ACCCTACATATGTAGTACTCCCT 57.055 43.478 31.46 10.58 44.88 4.20
6586 15059 5.890049 ACCCTACATATGTAGTACTCCCTC 58.110 45.833 31.46 0.00 44.88 4.30
6587 15060 5.222296 ACCCTACATATGTAGTACTCCCTCC 60.222 48.000 31.46 0.00 44.88 4.30
6588 15061 4.942483 CCTACATATGTAGTACTCCCTCCG 59.058 50.000 31.46 14.92 44.88 4.63
6589 15062 4.450305 ACATATGTAGTACTCCCTCCGT 57.550 45.455 6.56 0.00 0.00 4.69
6590 15063 4.801164 ACATATGTAGTACTCCCTCCGTT 58.199 43.478 6.56 0.00 0.00 4.44
6591 15064 4.826183 ACATATGTAGTACTCCCTCCGTTC 59.174 45.833 6.56 0.00 0.00 3.95
6592 15065 3.666345 ATGTAGTACTCCCTCCGTTCT 57.334 47.619 0.00 0.00 0.00 3.01
6593 15066 4.785346 ATGTAGTACTCCCTCCGTTCTA 57.215 45.455 0.00 0.00 0.00 2.10
6594 15067 4.574674 TGTAGTACTCCCTCCGTTCTAA 57.425 45.455 0.00 0.00 0.00 2.10
6595 15068 4.922206 TGTAGTACTCCCTCCGTTCTAAA 58.078 43.478 0.00 0.00 0.00 1.85
6596 15069 5.513233 TGTAGTACTCCCTCCGTTCTAAAT 58.487 41.667 0.00 0.00 0.00 1.40
6597 15070 5.954150 TGTAGTACTCCCTCCGTTCTAAATT 59.046 40.000 0.00 0.00 0.00 1.82
6598 15071 7.118723 TGTAGTACTCCCTCCGTTCTAAATTA 58.881 38.462 0.00 0.00 0.00 1.40
6599 15072 6.462552 AGTACTCCCTCCGTTCTAAATTAC 57.537 41.667 0.00 0.00 0.00 1.89
6600 15073 6.193504 AGTACTCCCTCCGTTCTAAATTACT 58.806 40.000 0.00 0.00 0.00 2.24
6601 15074 6.666980 AGTACTCCCTCCGTTCTAAATTACTT 59.333 38.462 0.00 0.00 0.00 2.24
6602 15075 5.731591 ACTCCCTCCGTTCTAAATTACTTG 58.268 41.667 0.00 0.00 0.00 3.16
6603 15076 5.247792 ACTCCCTCCGTTCTAAATTACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
6604 15077 5.727434 TCCCTCCGTTCTAAATTACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
6605 15078 5.482878 TCCCTCCGTTCTAAATTACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
6606 15079 6.013984 TCCCTCCGTTCTAAATTACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
6607 15080 6.092259 CCCTCCGTTCTAAATTACTTGTCTTG 59.908 42.308 0.00 0.00 0.00 3.02
6608 15081 6.872020 CCTCCGTTCTAAATTACTTGTCTTGA 59.128 38.462 0.00 0.00 0.00 3.02
6609 15082 7.386848 CCTCCGTTCTAAATTACTTGTCTTGAA 59.613 37.037 0.00 0.00 0.00 2.69
6610 15083 8.842358 TCCGTTCTAAATTACTTGTCTTGAAT 57.158 30.769 0.00 0.00 0.00 2.57
6611 15084 9.280174 TCCGTTCTAAATTACTTGTCTTGAATT 57.720 29.630 0.00 0.00 0.00 2.17
6612 15085 9.893305 CCGTTCTAAATTACTTGTCTTGAATTT 57.107 29.630 0.00 0.00 35.99 1.82
6624 15097 9.429359 ACTTGTCTTGAATTTGTCTAGATACAG 57.571 33.333 0.00 0.00 39.77 2.74
6625 15098 9.645059 CTTGTCTTGAATTTGTCTAGATACAGA 57.355 33.333 0.00 0.00 39.77 3.41
6627 15100 9.591792 TGTCTTGAATTTGTCTAGATACAGATG 57.408 33.333 0.00 0.00 39.77 2.90
6628 15101 9.593134 GTCTTGAATTTGTCTAGATACAGATGT 57.407 33.333 0.00 0.00 39.77 3.06
6659 15132 8.862085 AGACTTATTTTAGTGCTAGATACCTCC 58.138 37.037 0.00 0.00 0.00 4.30
6660 15133 7.659186 ACTTATTTTAGTGCTAGATACCTCCG 58.341 38.462 0.00 0.00 0.00 4.63
6661 15134 7.287235 ACTTATTTTAGTGCTAGATACCTCCGT 59.713 37.037 0.00 0.00 0.00 4.69
6662 15135 8.696043 TTATTTTAGTGCTAGATACCTCCGTA 57.304 34.615 0.00 0.00 0.00 4.02
6663 15136 7.778185 ATTTTAGTGCTAGATACCTCCGTAT 57.222 36.000 0.00 0.00 37.92 3.06
6675 15148 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
6676 15149 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
6677 15150 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
6678 15151 7.513371 ACCTCCGTATCTAGACAAATCTAAG 57.487 40.000 0.00 0.00 36.98 2.18
6679 15152 7.288560 ACCTCCGTATCTAGACAAATCTAAGA 58.711 38.462 0.00 0.00 36.98 2.10
6680 15153 7.945664 ACCTCCGTATCTAGACAAATCTAAGAT 59.054 37.037 0.00 0.00 36.98 2.40
6681 15154 9.451002 CCTCCGTATCTAGACAAATCTAAGATA 57.549 37.037 0.00 0.00 36.98 1.98
6699 15172 8.630917 TCTAAGATAAGTAATTCGGAACAGAGG 58.369 37.037 0.00 0.00 0.00 3.69
6700 15173 6.163135 AGATAAGTAATTCGGAACAGAGGG 57.837 41.667 0.00 0.00 0.00 4.30
6701 15174 5.897824 AGATAAGTAATTCGGAACAGAGGGA 59.102 40.000 0.00 0.00 0.00 4.20
6702 15175 4.473477 AAGTAATTCGGAACAGAGGGAG 57.527 45.455 0.00 0.00 0.00 4.30
6703 15176 3.442076 AGTAATTCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
6704 15177 4.607239 AGTAATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
6705 15178 4.645588 AGTAATTCGGAACAGAGGGAGTAG 59.354 45.833 0.00 0.00 0.00 2.57
6706 15179 2.599408 TTCGGAACAGAGGGAGTAGT 57.401 50.000 0.00 0.00 0.00 2.73
6707 15180 2.599408 TCGGAACAGAGGGAGTAGTT 57.401 50.000 0.00 0.00 0.00 2.24
6708 15181 2.444421 TCGGAACAGAGGGAGTAGTTC 58.556 52.381 0.00 0.00 39.59 3.01
6726 15199 3.055530 AGTTCCCACAAAACAAACATGCA 60.056 39.130 0.00 0.00 0.00 3.96
6794 15268 4.147449 TCATCTCCCCAGTGCGCG 62.147 66.667 0.00 0.00 0.00 6.86
6863 15338 2.203480 GCTGCCACCAAGGTCCAA 60.203 61.111 0.00 0.00 40.61 3.53
6898 15373 2.481952 AGAAGCGCTGAACATCAAAGAC 59.518 45.455 12.58 0.00 0.00 3.01
6965 15440 1.672356 CAGCCTTGTTGACCTCCGG 60.672 63.158 0.00 0.00 0.00 5.14
6968 15443 1.302511 CCTTGTTGACCTCCGGTGG 60.303 63.158 21.02 21.02 35.25 4.61
6972 15447 4.308458 TTGACCTCCGGTGGCGTG 62.308 66.667 22.46 0.00 35.25 5.34
6976 15451 4.619227 CCTCCGGTGGCGTGTGTT 62.619 66.667 10.13 0.00 0.00 3.32
6977 15452 3.345808 CTCCGGTGGCGTGTGTTG 61.346 66.667 0.00 0.00 0.00 3.33
7027 15527 6.596497 GGATTGTTAAGGAAATCGGTAACTGA 59.404 38.462 0.00 0.00 34.28 3.41
7038 15538 1.333931 CGGTAACTGATAGCTGCTCGA 59.666 52.381 4.91 0.00 0.00 4.04
7039 15539 2.733517 GGTAACTGATAGCTGCTCGAC 58.266 52.381 4.91 0.00 0.00 4.20
7081 15581 5.514274 AATCGGTGAATCGGCAAATTAAT 57.486 34.783 0.00 0.00 0.00 1.40
7084 15584 4.396478 TCGGTGAATCGGCAAATTAATTGA 59.604 37.500 0.39 0.00 41.85 2.57
7186 15697 4.830046 ACTCTCATGCTCTCGGTTATGTAT 59.170 41.667 0.00 0.00 0.00 2.29
7187 15698 6.004574 ACTCTCATGCTCTCGGTTATGTATA 58.995 40.000 0.00 0.00 0.00 1.47
7195 15706 6.492429 TGCTCTCGGTTATGTATAATACACCT 59.508 38.462 0.00 0.00 42.23 4.00
7196 15707 6.807230 GCTCTCGGTTATGTATAATACACCTG 59.193 42.308 0.00 0.00 42.23 4.00
7214 15725 6.630071 ACACCTGAATATGTTACAATTTGGC 58.370 36.000 0.78 0.00 0.00 4.52
7219 15730 7.106439 TGAATATGTTACAATTTGGCCGAAT 57.894 32.000 12.89 12.89 0.00 3.34
7221 15732 6.707440 ATATGTTACAATTTGGCCGAATCA 57.293 33.333 18.92 12.04 0.00 2.57
7236 15747 4.322349 GCCGAATCATAGCTATTGAGGAGT 60.322 45.833 2.64 0.00 0.00 3.85
7246 15757 0.419459 ATTGAGGAGTGAGAGGGGGT 59.581 55.000 0.00 0.00 0.00 4.95
7270 15781 0.828762 AGGGGTTACGGGCCAAAAAC 60.829 55.000 4.39 4.83 0.00 2.43
7277 15788 1.006220 CGGGCCAAAAACTTGAGCC 60.006 57.895 4.39 8.15 37.47 4.70
7287 15798 5.178061 CAAAAACTTGAGCCTTGTTTTCCT 58.822 37.500 0.00 0.00 41.26 3.36
7288 15799 4.391405 AAACTTGAGCCTTGTTTTCCTG 57.609 40.909 0.00 0.00 30.84 3.86
7316 15827 8.691661 AGTTAATGGGATAGCAACGAATAATT 57.308 30.769 0.00 0.00 0.00 1.40
7319 15830 5.042463 TGGGATAGCAACGAATAATTGGA 57.958 39.130 0.00 0.00 0.00 3.53
7328 15839 3.686016 ACGAATAATTGGACTGGCAACT 58.314 40.909 0.00 0.00 37.61 3.16
7339 15850 2.608090 GACTGGCAACTTATTACTCGGC 59.392 50.000 0.00 0.00 37.61 5.54
7346 15857 3.521947 ACTTATTACTCGGCCTCACAC 57.478 47.619 0.00 0.00 0.00 3.82
7358 15887 1.931709 GCCTCACACGCAGTTAACGTA 60.932 52.381 0.00 0.00 41.61 3.57
7369 15898 6.021547 CACGCAGTTAACGTAACGAATATGTA 60.022 38.462 15.85 0.00 41.61 2.29
7427 15956 6.229936 ACTAGCCCGTTAACTGATTAATCA 57.770 37.500 17.07 17.07 32.91 2.57
7447 15976 5.173774 TCAGTTGAATTCTTGAACAGTGC 57.826 39.130 7.05 0.00 0.00 4.40
7449 15978 3.003689 AGTTGAATTCTTGAACAGTGCGG 59.996 43.478 7.05 0.00 0.00 5.69
7454 15985 3.678056 TTCTTGAACAGTGCGGACTAT 57.322 42.857 10.03 0.00 0.00 2.12
7468 15999 4.039852 TGCGGACTATTAGGCAACATATCA 59.960 41.667 0.00 0.00 41.41 2.15
7546 16077 4.077184 CCCTACCCGCGCACAAGA 62.077 66.667 8.75 0.00 0.00 3.02
7563 16094 5.685511 GCACAAGATGTTTGACAAATTACGT 59.314 36.000 3.49 0.00 0.00 3.57
7569 16100 4.922719 TGTTTGACAAATTACGTCCAACC 58.077 39.130 16.13 5.60 37.92 3.77
7582 16113 2.287009 CGTCCAACCACTTTTTCTCTGC 60.287 50.000 0.00 0.00 0.00 4.26
7644 16175 8.642432 CACTCCAATATGTAGATGAAGAGGTTA 58.358 37.037 0.00 0.00 0.00 2.85
7660 16191 4.844655 AGAGGTTATGGGAGTTGTACTTGT 59.155 41.667 0.00 0.00 0.00 3.16
7663 16194 5.783875 AGGTTATGGGAGTTGTACTTGTACT 59.216 40.000 11.53 0.00 0.00 2.73
7664 16195 6.271624 AGGTTATGGGAGTTGTACTTGTACTT 59.728 38.462 11.53 0.00 0.00 2.24
7665 16196 6.370718 GGTTATGGGAGTTGTACTTGTACTTG 59.629 42.308 11.53 0.00 0.00 3.16
7666 16197 4.345859 TGGGAGTTGTACTTGTACTTGG 57.654 45.455 11.53 0.00 0.00 3.61
7667 16198 3.968649 TGGGAGTTGTACTTGTACTTGGA 59.031 43.478 11.53 0.00 0.00 3.53
7668 16199 4.202284 TGGGAGTTGTACTTGTACTTGGAC 60.202 45.833 11.53 0.00 0.00 4.02
7669 16200 4.202284 GGGAGTTGTACTTGTACTTGGACA 60.202 45.833 11.53 0.00 0.00 4.02
7670 16201 5.362263 GGAGTTGTACTTGTACTTGGACAA 58.638 41.667 10.86 10.86 36.98 3.18
7671 16202 5.995897 GGAGTTGTACTTGTACTTGGACAAT 59.004 40.000 15.75 8.21 38.60 2.71
7672 16203 6.485648 GGAGTTGTACTTGTACTTGGACAATT 59.514 38.462 15.75 12.87 38.60 2.32
7673 16204 7.012989 GGAGTTGTACTTGTACTTGGACAATTT 59.987 37.037 15.75 9.87 38.60 1.82
7674 16205 8.288689 AGTTGTACTTGTACTTGGACAATTTT 57.711 30.769 15.75 6.32 38.60 1.82
7675 16206 8.188139 AGTTGTACTTGTACTTGGACAATTTTG 58.812 33.333 15.75 0.00 38.60 2.44
7676 16207 6.500041 TGTACTTGTACTTGGACAATTTTGC 58.500 36.000 11.53 0.00 38.60 3.68
7677 16208 4.606961 ACTTGTACTTGGACAATTTTGCG 58.393 39.130 0.00 0.00 38.60 4.85
7678 16209 4.097286 ACTTGTACTTGGACAATTTTGCGT 59.903 37.500 0.00 0.00 38.60 5.24
7698 16229 4.142138 GCGTTTAGAGGAGGATGAAGAAGA 60.142 45.833 0.00 0.00 0.00 2.87
7753 16284 7.288852 TCATTCGAGAGGAGAATTTTAGGAGAT 59.711 37.037 0.00 0.00 36.30 2.75
7853 16384 7.990314 TGAAACATATCCCACGAAATATTCTCA 59.010 33.333 0.00 0.00 0.00 3.27
7856 16387 2.821546 TCCCACGAAATATTCTCAGCG 58.178 47.619 0.00 0.00 0.00 5.18
7858 16389 2.483013 CCCACGAAATATTCTCAGCGGA 60.483 50.000 0.00 0.00 0.00 5.54
7888 16422 1.302431 CACCGGCTCATCAACACCA 60.302 57.895 0.00 0.00 0.00 4.17
7891 16425 1.280710 ACCGGCTCATCAACACCATTA 59.719 47.619 0.00 0.00 0.00 1.90
7899 16433 4.009675 TCATCAACACCATTACAAGAGCC 58.990 43.478 0.00 0.00 0.00 4.70
7991 16525 2.881513 TGAAGATTACAACGGCTTTGCA 59.118 40.909 3.33 0.00 39.01 4.08
7993 16527 4.202060 TGAAGATTACAACGGCTTTGCAAA 60.202 37.500 12.14 12.14 39.01 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.954258 CCCTTCTTTTCTTGACCACTGTT 59.046 43.478 0.00 0.00 0.00 3.16
46 47 3.459969 AGTCCCTTCTTTTCTTGACCACT 59.540 43.478 0.00 0.00 0.00 4.00
142 143 5.333339 CGTCCTTGTGTGAAACTTCTATGTG 60.333 44.000 0.00 0.00 38.04 3.21
155 156 2.878406 ACCTTGAATTCGTCCTTGTGTG 59.122 45.455 0.04 0.00 0.00 3.82
161 162 1.271379 CCACCACCTTGAATTCGTCCT 60.271 52.381 0.04 0.00 0.00 3.85
220 221 9.444600 CTGTAACCTACCTTGTACACAATATTT 57.555 33.333 0.00 0.00 35.02 1.40
323 324 7.388776 ACCGTGTGTCTATACTCGCTATATAAA 59.611 37.037 0.00 0.00 36.54 1.40
336 337 5.221106 GCATAGGTTACACCGTGTGTCTATA 60.221 44.000 14.66 1.83 43.92 1.31
348 349 8.665685 GTGCTATTATATTGGCATAGGTTACAC 58.334 37.037 8.62 0.00 37.05 2.90
484 487 4.158209 TGTTAACGAGGTTCACCGATATGA 59.842 41.667 0.26 0.00 42.08 2.15
523 526 1.202758 AGGACCAAGCAATCACACGAA 60.203 47.619 0.00 0.00 0.00 3.85
558 561 7.754069 TTTGCTAAAATAAATTCGAGGCATG 57.246 32.000 0.00 0.00 0.00 4.06
660 664 5.835113 AGCAAATATGATTTTACGTGCCT 57.165 34.783 0.00 0.00 0.00 4.75
666 671 6.351000 CGACGACGAAGCAAATATGATTTTAC 59.649 38.462 0.00 0.00 42.66 2.01
674 679 3.146618 AGACGACGACGAAGCAAATAT 57.853 42.857 15.32 0.00 42.66 1.28
676 681 2.624316 TAGACGACGACGAAGCAAAT 57.376 45.000 15.32 0.00 42.66 2.32
735 740 3.672867 CACGCGACCTGCAAAATAAAAAT 59.327 39.130 15.93 0.00 46.97 1.82
986 4396 0.378962 TATGCGCAAAATACGTGCCC 59.621 50.000 17.11 0.00 38.86 5.36
991 4401 4.404507 AAGCCTATATGCGCAAAATACG 57.595 40.909 17.11 10.51 36.02 3.06
1034 7169 6.354039 TCCGTTTTGTTGTTCTCTAGAAAC 57.646 37.500 0.00 2.70 35.58 2.78
1527 7744 1.272781 GAGTCATCGCTTGAGAACGG 58.727 55.000 0.00 0.00 34.17 4.44
1694 7926 3.058016 CAGAGTGCAAAACATGACCGATT 60.058 43.478 0.00 0.00 0.00 3.34
1736 7979 5.889853 ACAGGAATGAGCATGAACATGTAAT 59.110 36.000 14.82 0.00 40.80 1.89
1737 7980 5.255687 ACAGGAATGAGCATGAACATGTAA 58.744 37.500 14.82 0.00 40.80 2.41
1739 7986 3.693807 ACAGGAATGAGCATGAACATGT 58.306 40.909 14.82 0.00 40.80 3.21
1743 7990 5.220931 GGTCAATACAGGAATGAGCATGAAC 60.221 44.000 0.00 0.00 40.37 3.18
1777 8054 1.136110 TCAACGAAGAGGATATGCGCA 59.864 47.619 14.96 14.96 0.00 6.09
1859 8136 6.551227 TCATGTAACTGCAGTGAGGTAGATAT 59.449 38.462 22.49 2.51 0.00 1.63
1941 8289 0.391528 GGCAATCAATGGGTGGCAAC 60.392 55.000 0.00 0.00 37.73 4.17
1981 8352 0.600255 CTGGACAAGGTCACGTGGAC 60.600 60.000 17.00 12.21 46.20 4.02
2042 8414 1.885359 GCATACGAGTCTCCCCCGATA 60.885 57.143 0.00 0.00 0.00 2.92
2073 8445 6.455360 AATCTTTTGTGCGATGAATGGTAT 57.545 33.333 0.00 0.00 0.00 2.73
2119 8491 8.601845 TCAATGTTGGATACGTGGAAATATAG 57.398 34.615 0.00 0.00 42.51 1.31
2187 8559 5.700402 AAGATAGCTCACCACATTTACCT 57.300 39.130 0.00 0.00 0.00 3.08
2452 8846 6.993786 TGATGAATAGCAAAACCGATAACA 57.006 33.333 0.00 0.00 0.00 2.41
2493 8887 7.406104 AGCCATCCTAAACTCACTAAAGAAAT 58.594 34.615 0.00 0.00 0.00 2.17
2635 9035 4.927267 TGGATGGGACCCATGATATAAC 57.073 45.455 31.39 13.79 45.26 1.89
2651 9051 1.247567 GTTGGGTGGTGACTTGGATG 58.752 55.000 0.00 0.00 0.00 3.51
2652 9052 0.850100 TGTTGGGTGGTGACTTGGAT 59.150 50.000 0.00 0.00 0.00 3.41
2665 9065 5.384336 TCATTGGGATGTATATGTGTTGGG 58.616 41.667 0.00 0.00 34.77 4.12
2666 9066 7.528996 AATCATTGGGATGTATATGTGTTGG 57.471 36.000 0.00 0.00 36.02 3.77
2676 9076 9.519191 CATAAGTGGATAAATCATTGGGATGTA 57.481 33.333 0.00 0.00 36.02 2.29
2741 9143 8.659925 TTGTTTCCTTTATGTCAACGTACTTA 57.340 30.769 0.00 0.00 0.00 2.24
2750 9152 9.753674 ATCCTCTTATTTGTTTCCTTTATGTCA 57.246 29.630 0.00 0.00 0.00 3.58
2893 9301 8.507249 GCTTAGTTTTTCAGAGAATACACACAT 58.493 33.333 0.00 0.00 0.00 3.21
2956 9366 4.245660 GCATTTAGCATGCCGTCTATCTA 58.754 43.478 15.66 0.00 44.79 1.98
3011 9421 3.145551 GAAGCCCCGAGACGCCTA 61.146 66.667 0.00 0.00 0.00 3.93
3053 9463 7.397970 CAAACACGTTTGTTGATTTATTGCTT 58.602 30.769 13.34 0.00 45.69 3.91
3086 9496 3.835978 AGTGGGTGCTAGTACATGTGTTA 59.164 43.478 13.26 0.00 0.00 2.41
3136 9546 9.845740 AAGACAATATTATGTGGCATAACACTA 57.154 29.630 4.00 0.00 41.84 2.74
3156 9566 2.288666 GTGTTGCTCCACTGAAGACAA 58.711 47.619 0.00 0.00 32.50 3.18
3168 9578 3.055819 TCATTCCTCTAGTGGTGTTGCTC 60.056 47.826 10.56 0.00 0.00 4.26
3363 10194 9.930693 ACCGGCAAATTAATACAAAATTTAGAA 57.069 25.926 0.00 0.00 35.35 2.10
3419 10251 3.831323 TCTTGGGAAGAAAGCACAATCA 58.169 40.909 0.00 0.00 33.83 2.57
3487 10323 1.212935 CTCCTATTCAACCACCCCCAG 59.787 57.143 0.00 0.00 0.00 4.45
3610 10447 4.573607 ACTTTCGTAGTGGTGACCTTTTTC 59.426 41.667 2.11 0.00 35.19 2.29
3708 10564 8.483758 ACGTCTCCCACAAATATTAGAGTTAAT 58.516 33.333 0.00 0.00 34.04 1.40
3709 10565 7.844009 ACGTCTCCCACAAATATTAGAGTTAA 58.156 34.615 0.00 0.00 0.00 2.01
3753 10610 1.804748 GGCTGGACCTTTTTAGTCGTG 59.195 52.381 0.00 0.00 34.97 4.35
3831 10691 4.672587 TGTAAAGATCGAAGATCCCCTG 57.327 45.455 6.43 0.00 45.12 4.45
3870 10730 3.118408 CCACCGGGAACATCAAAGATCTA 60.118 47.826 6.32 0.00 35.59 1.98
3970 11235 7.495279 TGCTTTCACTAAGAAAACAAATGCAAT 59.505 29.630 0.00 0.00 45.11 3.56
4166 11457 0.605083 CCTATAGGCATGCTCGCTCA 59.395 55.000 18.92 0.00 0.00 4.26
4182 11497 1.078823 ACACCTCCCACTCACATCCTA 59.921 52.381 0.00 0.00 0.00 2.94
4486 11818 5.470368 GGGTGAAAACTAGGCAGAATTTTC 58.530 41.667 0.00 1.09 40.09 2.29
4540 11872 3.978855 TCTACGTTTCATGAACAGACGTG 59.021 43.478 31.98 24.38 45.29 4.49
4755 12094 4.039973 TCCGGTTAGGCATAGTTATGAAGG 59.960 45.833 0.00 0.00 40.77 3.46
4783 12122 4.674281 TGGTATATGTACGCCATTGACA 57.326 40.909 0.00 0.00 34.86 3.58
4871 12282 5.066375 GCTGATTGACATGGTGTGCTTATTA 59.934 40.000 0.00 0.00 0.00 0.98
4888 12299 6.426980 TGCAGAACAAACTATAGCTGATTG 57.573 37.500 0.00 7.68 0.00 2.67
4917 12328 5.282055 CATGGGTTGCTGAGTAGAGATAA 57.718 43.478 0.00 0.00 0.00 1.75
4937 12348 4.460263 TGCTACGAAAATATTGGAGGCAT 58.540 39.130 0.00 0.00 0.00 4.40
4965 12376 3.780902 TGCATATTACTGTGTGTCCTCG 58.219 45.455 0.00 0.00 0.00 4.63
5023 12540 9.971922 TCAGATATATTAACATCACACTCACAG 57.028 33.333 0.00 0.00 0.00 3.66
5078 12597 5.574326 CGGGTTACCTACTATATAGCCCTGA 60.574 48.000 9.78 0.00 37.24 3.86
5088 12607 2.433239 CTGTTGCCGGGTTACCTACTAT 59.567 50.000 2.18 0.00 33.28 2.12
5213 12734 4.650734 TGGTTGTATGAGCAGATTGACAA 58.349 39.130 0.00 0.00 0.00 3.18
5214 12735 4.284829 TGGTTGTATGAGCAGATTGACA 57.715 40.909 0.00 0.00 0.00 3.58
5554 13431 3.366396 TCCTCGCTTAAGATCTTCCTGT 58.634 45.455 12.24 0.00 0.00 4.00
5609 13486 3.195698 GGACGAACTGGCGGATGC 61.196 66.667 0.00 0.00 41.71 3.91
5698 13598 0.035439 ATCGGGTTGGTGGCTTAGTG 60.035 55.000 0.00 0.00 0.00 2.74
5702 13602 0.680921 CATCATCGGGTTGGTGGCTT 60.681 55.000 0.00 0.00 0.00 4.35
5703 13603 1.077501 CATCATCGGGTTGGTGGCT 60.078 57.895 0.00 0.00 0.00 4.75
5704 13604 2.774799 GCATCATCGGGTTGGTGGC 61.775 63.158 0.00 0.00 0.00 5.01
5707 13607 1.386525 GCATGCATCATCGGGTTGGT 61.387 55.000 14.21 0.00 0.00 3.67
5708 13608 1.361271 GCATGCATCATCGGGTTGG 59.639 57.895 14.21 0.00 0.00 3.77
5709 13609 1.361271 GGCATGCATCATCGGGTTG 59.639 57.895 21.36 0.00 0.00 3.77
5710 13610 1.829533 GGGCATGCATCATCGGGTT 60.830 57.895 21.36 0.00 0.00 4.11
5845 13750 4.467084 GGGACGCCGCCATCTTGA 62.467 66.667 0.33 0.00 0.00 3.02
5987 13899 1.071987 CAGCTGGCTCACTCCAACA 59.928 57.895 5.57 0.00 35.36 3.33
6049 13961 1.478916 TGGCTCGTATCCGTTTGATGA 59.521 47.619 0.00 0.00 34.76 2.92
6059 13971 3.247173 CAGAATTTCAGCTGGCTCGTATC 59.753 47.826 15.13 3.97 0.00 2.24
6164 14585 1.452108 GACGATGGGGAAGCCAAGG 60.452 63.158 0.00 0.00 0.00 3.61
6248 14677 4.811557 GTGAGTGAAGTAAACAGAGCAAGT 59.188 41.667 0.00 0.00 0.00 3.16
6250 14679 4.811024 CAGTGAGTGAAGTAAACAGAGCAA 59.189 41.667 0.00 0.00 0.00 3.91
6387 14852 1.366111 CTAAACCGTGCATCCCACCG 61.366 60.000 0.00 0.00 41.53 4.94
6568 15041 4.450305 ACGGAGGGAGTACTACATATGT 57.550 45.455 13.93 13.93 0.00 2.29
6571 15044 4.785346 AGAACGGAGGGAGTACTACATA 57.215 45.455 7.57 0.00 0.00 2.29
6579 15052 5.247792 ACAAGTAATTTAGAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
6581 15054 5.482878 AGACAAGTAATTTAGAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
6583 15056 6.872020 TCAAGACAAGTAATTTAGAACGGAGG 59.128 38.462 0.00 0.00 0.00 4.30
6584 15057 7.884816 TCAAGACAAGTAATTTAGAACGGAG 57.115 36.000 0.00 0.00 0.00 4.63
6585 15058 8.842358 ATTCAAGACAAGTAATTTAGAACGGA 57.158 30.769 0.00 0.00 0.00 4.69
6586 15059 9.893305 AAATTCAAGACAAGTAATTTAGAACGG 57.107 29.630 0.00 0.00 31.55 4.44
6598 15071 9.429359 CTGTATCTAGACAAATTCAAGACAAGT 57.571 33.333 0.00 0.00 0.00 3.16
6599 15072 9.645059 TCTGTATCTAGACAAATTCAAGACAAG 57.355 33.333 0.00 0.00 0.00 3.16
6601 15074 9.591792 CATCTGTATCTAGACAAATTCAAGACA 57.408 33.333 0.00 0.00 0.00 3.41
6602 15075 9.593134 ACATCTGTATCTAGACAAATTCAAGAC 57.407 33.333 0.00 0.00 0.00 3.01
6633 15106 8.862085 GGAGGTATCTAGCACTAAAATAAGTCT 58.138 37.037 0.00 0.00 0.00 3.24
6634 15107 7.808856 CGGAGGTATCTAGCACTAAAATAAGTC 59.191 40.741 0.00 0.00 0.00 3.01
6635 15108 7.287235 ACGGAGGTATCTAGCACTAAAATAAGT 59.713 37.037 0.00 0.00 0.00 2.24
6636 15109 7.659186 ACGGAGGTATCTAGCACTAAAATAAG 58.341 38.462 0.00 0.00 0.00 1.73
6637 15110 7.592885 ACGGAGGTATCTAGCACTAAAATAA 57.407 36.000 0.00 0.00 0.00 1.40
6638 15111 8.874744 ATACGGAGGTATCTAGCACTAAAATA 57.125 34.615 0.00 0.00 34.18 1.40
6639 15112 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
6652 15125 9.233649 CTTAGATTTGTCTAGATACGGAGGTAT 57.766 37.037 0.00 0.00 42.01 2.73
6653 15126 8.435187 TCTTAGATTTGTCTAGATACGGAGGTA 58.565 37.037 0.00 0.00 0.00 3.08
6654 15127 7.288560 TCTTAGATTTGTCTAGATACGGAGGT 58.711 38.462 0.00 0.00 0.00 3.85
6655 15128 7.747155 TCTTAGATTTGTCTAGATACGGAGG 57.253 40.000 0.00 0.00 0.00 4.30
6673 15146 8.630917 CCTCTGTTCCGAATTACTTATCTTAGA 58.369 37.037 0.00 0.00 0.00 2.10
6674 15147 7.868415 CCCTCTGTTCCGAATTACTTATCTTAG 59.132 40.741 0.00 0.00 0.00 2.18
6675 15148 7.562454 TCCCTCTGTTCCGAATTACTTATCTTA 59.438 37.037 0.00 0.00 0.00 2.10
6676 15149 6.383147 TCCCTCTGTTCCGAATTACTTATCTT 59.617 38.462 0.00 0.00 0.00 2.40
6677 15150 5.897824 TCCCTCTGTTCCGAATTACTTATCT 59.102 40.000 0.00 0.00 0.00 1.98
6678 15151 6.158023 TCCCTCTGTTCCGAATTACTTATC 57.842 41.667 0.00 0.00 0.00 1.75
6679 15152 5.661759 ACTCCCTCTGTTCCGAATTACTTAT 59.338 40.000 0.00 0.00 0.00 1.73
6680 15153 5.021458 ACTCCCTCTGTTCCGAATTACTTA 58.979 41.667 0.00 0.00 0.00 2.24
6681 15154 3.838903 ACTCCCTCTGTTCCGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
6682 15155 3.442076 ACTCCCTCTGTTCCGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
6683 15156 3.889520 ACTCCCTCTGTTCCGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
6684 15157 4.607239 ACTACTCCCTCTGTTCCGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
6685 15158 3.442076 ACTACTCCCTCTGTTCCGAATT 58.558 45.455 0.00 0.00 0.00 2.17
6686 15159 3.103080 ACTACTCCCTCTGTTCCGAAT 57.897 47.619 0.00 0.00 0.00 3.34
6687 15160 2.599408 ACTACTCCCTCTGTTCCGAA 57.401 50.000 0.00 0.00 0.00 4.30
6688 15161 2.444421 GAACTACTCCCTCTGTTCCGA 58.556 52.381 0.00 0.00 34.47 4.55
6689 15162 1.477295 GGAACTACTCCCTCTGTTCCG 59.523 57.143 7.80 0.00 45.61 4.30
6699 15172 4.399934 TGTTTGTTTTGTGGGAACTACTCC 59.600 41.667 0.00 0.00 44.54 3.85
6700 15173 5.570234 TGTTTGTTTTGTGGGAACTACTC 57.430 39.130 0.00 0.00 0.00 2.59
6701 15174 5.681179 GCATGTTTGTTTTGTGGGAACTACT 60.681 40.000 0.00 0.00 0.00 2.57
6702 15175 4.506288 GCATGTTTGTTTTGTGGGAACTAC 59.494 41.667 0.00 0.00 0.00 2.73
6703 15176 4.160439 TGCATGTTTGTTTTGTGGGAACTA 59.840 37.500 0.00 0.00 0.00 2.24
6704 15177 3.055530 TGCATGTTTGTTTTGTGGGAACT 60.056 39.130 0.00 0.00 0.00 3.01
6705 15178 3.063316 GTGCATGTTTGTTTTGTGGGAAC 59.937 43.478 0.00 0.00 0.00 3.62
6706 15179 3.265791 GTGCATGTTTGTTTTGTGGGAA 58.734 40.909 0.00 0.00 0.00 3.97
6707 15180 2.234661 TGTGCATGTTTGTTTTGTGGGA 59.765 40.909 0.00 0.00 0.00 4.37
6708 15181 2.625737 TGTGCATGTTTGTTTTGTGGG 58.374 42.857 0.00 0.00 0.00 4.61
6709 15182 3.002451 CCATGTGCATGTTTGTTTTGTGG 59.998 43.478 10.76 0.00 37.11 4.17
6710 15183 3.002451 CCCATGTGCATGTTTGTTTTGTG 59.998 43.478 10.76 0.00 37.11 3.33
6711 15184 3.204526 CCCATGTGCATGTTTGTTTTGT 58.795 40.909 10.76 0.00 37.11 2.83
6712 15185 2.548904 CCCCATGTGCATGTTTGTTTTG 59.451 45.455 10.76 0.00 37.11 2.44
6814 15289 5.914033 TGACTTTAGCACTGTGTAGTTTCT 58.086 37.500 9.86 0.00 34.07 2.52
6815 15290 5.333416 GCTGACTTTAGCACTGTGTAGTTTC 60.333 44.000 9.86 0.82 43.17 2.78
6863 15338 1.534729 GCTTCTGTTCCCGTCCAAAT 58.465 50.000 0.00 0.00 0.00 2.32
6898 15373 3.612423 TCGCATGTCAATCTTCTACAACG 59.388 43.478 0.00 0.00 0.00 4.10
6941 15416 1.212935 AGGTCAACAAGGCTGTTCTGT 59.787 47.619 0.00 0.00 44.15 3.41
6965 15440 2.896801 CTGGAGCAACACACGCCAC 61.897 63.158 0.00 0.00 33.15 5.01
6968 15443 4.030452 GGCTGGAGCAACACACGC 62.030 66.667 0.20 0.00 44.36 5.34
7027 15527 0.179089 CAAGCCAGTCGAGCAGCTAT 60.179 55.000 0.00 0.00 34.49 2.97
7038 15538 0.978146 ATCGCTACTCCCAAGCCAGT 60.978 55.000 0.00 0.00 36.60 4.00
7039 15539 0.179000 AATCGCTACTCCCAAGCCAG 59.821 55.000 0.00 0.00 36.60 4.85
7081 15581 9.877137 CGATTAATGGTCGATCAATTAATTCAA 57.123 29.630 18.65 0.00 41.40 2.69
7195 15706 6.516739 TTCGGCCAAATTGTAACATATTCA 57.483 33.333 2.24 0.00 0.00 2.57
7196 15707 7.199766 TGATTCGGCCAAATTGTAACATATTC 58.800 34.615 2.24 0.00 0.00 1.75
7214 15725 5.047731 TCACTCCTCAATAGCTATGATTCGG 60.048 44.000 7.09 4.46 0.00 4.30
7219 15730 5.076182 CCTCTCACTCCTCAATAGCTATGA 58.924 45.833 7.09 6.37 0.00 2.15
7221 15732 4.415596 CCCTCTCACTCCTCAATAGCTAT 58.584 47.826 0.00 0.00 0.00 2.97
7236 15747 2.124996 CCTCCCAACCCCCTCTCA 59.875 66.667 0.00 0.00 0.00 3.27
7246 15757 3.332385 GCCCGTAACCCCTCCCAA 61.332 66.667 0.00 0.00 0.00 4.12
7270 15781 2.586425 TCCAGGAAAACAAGGCTCAAG 58.414 47.619 0.00 0.00 0.00 3.02
7277 15788 5.538433 TCCCATTAACTTCCAGGAAAACAAG 59.462 40.000 2.72 0.00 0.00 3.16
7287 15798 4.080807 TCGTTGCTATCCCATTAACTTCCA 60.081 41.667 0.00 0.00 0.00 3.53
7288 15799 4.448210 TCGTTGCTATCCCATTAACTTCC 58.552 43.478 0.00 0.00 0.00 3.46
7316 15827 3.369052 CCGAGTAATAAGTTGCCAGTCCA 60.369 47.826 0.00 0.00 0.00 4.02
7319 15830 2.629051 GCCGAGTAATAAGTTGCCAGT 58.371 47.619 0.00 0.00 0.00 4.00
7328 15839 1.470285 GCGTGTGAGGCCGAGTAATAA 60.470 52.381 0.00 0.00 0.00 1.40
7339 15850 2.054687 TACGTTAACTGCGTGTGAGG 57.945 50.000 3.71 0.00 42.87 3.86
7346 15857 5.365766 ACATATTCGTTACGTTAACTGCG 57.634 39.130 4.24 3.25 36.54 5.18
7358 15887 8.234546 GGCCGAATCAAATAATACATATTCGTT 58.765 33.333 12.52 0.00 42.35 3.85
7369 15898 4.695455 CGTAGGATGGCCGAATCAAATAAT 59.305 41.667 0.00 0.00 39.96 1.28
7394 15923 5.010415 AGTTAACGGGCTAGTTAATCGCTAT 59.990 40.000 16.99 3.51 44.97 2.97
7427 15956 3.003689 CCGCACTGTTCAAGAATTCAACT 59.996 43.478 8.44 0.00 27.15 3.16
7447 15976 5.171476 CCTGATATGTTGCCTAATAGTCCG 58.829 45.833 0.00 0.00 0.00 4.79
7449 15978 5.013183 ACCCCTGATATGTTGCCTAATAGTC 59.987 44.000 0.00 0.00 0.00 2.59
7454 15985 2.441750 GGACCCCTGATATGTTGCCTAA 59.558 50.000 0.00 0.00 0.00 2.69
7533 16064 1.896660 AAACATCTTGTGCGCGGGT 60.897 52.632 8.83 0.00 0.00 5.28
7563 16094 2.951642 CAGCAGAGAAAAAGTGGTTGGA 59.048 45.455 0.00 0.00 0.00 3.53
7569 16100 5.401550 TCAACAAACAGCAGAGAAAAAGTG 58.598 37.500 0.00 0.00 0.00 3.16
7644 16175 4.595781 TCCAAGTACAAGTACAACTCCCAT 59.404 41.667 12.43 0.00 38.48 4.00
7660 16191 6.293735 CCTCTAAACGCAAAATTGTCCAAGTA 60.294 38.462 0.00 0.00 0.00 2.24
7663 16194 4.580995 TCCTCTAAACGCAAAATTGTCCAA 59.419 37.500 0.00 0.00 0.00 3.53
7664 16195 4.138290 TCCTCTAAACGCAAAATTGTCCA 58.862 39.130 0.00 0.00 0.00 4.02
7665 16196 4.379499 CCTCCTCTAAACGCAAAATTGTCC 60.379 45.833 0.00 0.00 0.00 4.02
7666 16197 4.454504 TCCTCCTCTAAACGCAAAATTGTC 59.545 41.667 0.00 0.00 0.00 3.18
7667 16198 4.394729 TCCTCCTCTAAACGCAAAATTGT 58.605 39.130 0.00 0.00 0.00 2.71
7668 16199 5.123820 TCATCCTCCTCTAAACGCAAAATTG 59.876 40.000 0.00 0.00 0.00 2.32
7669 16200 5.253330 TCATCCTCCTCTAAACGCAAAATT 58.747 37.500 0.00 0.00 0.00 1.82
7670 16201 4.843728 TCATCCTCCTCTAAACGCAAAAT 58.156 39.130 0.00 0.00 0.00 1.82
7671 16202 4.280436 TCATCCTCCTCTAAACGCAAAA 57.720 40.909 0.00 0.00 0.00 2.44
7672 16203 3.973206 TCATCCTCCTCTAAACGCAAA 57.027 42.857 0.00 0.00 0.00 3.68
7673 16204 3.513912 TCTTCATCCTCCTCTAAACGCAA 59.486 43.478 0.00 0.00 0.00 4.85
7674 16205 3.096852 TCTTCATCCTCCTCTAAACGCA 58.903 45.455 0.00 0.00 0.00 5.24
7675 16206 3.802948 TCTTCATCCTCCTCTAAACGC 57.197 47.619 0.00 0.00 0.00 4.84
7676 16207 5.584253 TCTTCTTCATCCTCCTCTAAACG 57.416 43.478 0.00 0.00 0.00 3.60
7677 16208 6.883744 ACATCTTCTTCATCCTCCTCTAAAC 58.116 40.000 0.00 0.00 0.00 2.01
7678 16209 7.180946 TCAACATCTTCTTCATCCTCCTCTAAA 59.819 37.037 0.00 0.00 0.00 1.85
7698 16229 3.665745 GGCACCAACTCAAATCAACAT 57.334 42.857 0.00 0.00 0.00 2.71
7741 16272 4.141390 ACCATGCCTCGATCTCCTAAAATT 60.141 41.667 0.00 0.00 0.00 1.82
7853 16384 0.249489 GTGCATCCGTAATCTCCGCT 60.249 55.000 0.00 0.00 0.00 5.52
7888 16422 0.535335 TTCTCCGCGGCTCTTGTAAT 59.465 50.000 23.51 0.00 0.00 1.89
7891 16425 1.668151 GTTTCTCCGCGGCTCTTGT 60.668 57.895 23.51 0.00 0.00 3.16
7899 16433 0.999406 AACGATGATGTTTCTCCGCG 59.001 50.000 0.00 0.00 0.00 6.46
7964 16498 4.513442 AGCCGTTGTAATCTTCAAGCATA 58.487 39.130 0.00 0.00 0.00 3.14
7967 16501 3.831715 AAGCCGTTGTAATCTTCAAGC 57.168 42.857 0.00 0.00 0.00 4.01
7968 16502 3.914364 GCAAAGCCGTTGTAATCTTCAAG 59.086 43.478 0.20 0.00 39.63 3.02
7991 16525 4.220724 AGGACATCCATATGCAAGCATTT 58.779 39.130 13.32 2.28 36.50 2.32
7993 16527 3.520691 AGGACATCCATATGCAAGCAT 57.479 42.857 12.66 12.66 36.50 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.