Multiple sequence alignment - TraesCS2A01G410300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G410300 chr2A 100.000 3395 0 0 1 3395 668010891 668014285 0.000000e+00 6270
1 TraesCS2A01G410300 chr2A 87.126 769 58 29 2653 3395 757830822 757830069 0.000000e+00 833
2 TraesCS2A01G410300 chr2A 75.313 1357 276 54 1037 2353 667942235 667943572 2.260000e-166 595
3 TraesCS2A01G410300 chr2A 73.986 1380 275 62 1034 2353 75656525 75655170 1.830000e-132 483
4 TraesCS2A01G410300 chr2D 90.348 2300 107 45 404 2653 522910583 522912817 0.000000e+00 2911
5 TraesCS2A01G410300 chr2D 76.549 1356 252 58 1037 2353 522689396 522690724 0.000000e+00 682
6 TraesCS2A01G410300 chr2D 75.648 1351 267 55 1040 2353 577609357 577608032 1.730000e-172 616
7 TraesCS2A01G410300 chr2D 77.922 770 148 19 1598 2353 522630303 522631064 8.580000e-126 460
8 TraesCS2A01G410300 chr2D 76.591 440 89 14 1033 1466 522749269 522749700 2.640000e-56 230
9 TraesCS2A01G410300 chr2B 91.470 2157 110 35 526 2614 615920237 615922387 0.000000e+00 2896
10 TraesCS2A01G410300 chr2B 77.145 1212 217 53 1037 2212 615736052 615737239 0.000000e+00 649
11 TraesCS2A01G410300 chr2B 80.395 607 109 9 1752 2353 615578571 615579172 1.440000e-123 453
12 TraesCS2A01G410300 chr2B 85.714 357 40 8 1 346 228754710 228755066 1.920000e-97 366
13 TraesCS2A01G410300 chr2B 84.594 357 39 11 1 346 723422805 723423156 1.170000e-89 340
14 TraesCS2A01G410300 chr2B 76.591 440 91 12 1033 1466 615788469 615788902 7.330000e-57 231
15 TraesCS2A01G410300 chr2B 82.657 271 23 9 526 778 615909068 615909332 5.700000e-53 219
16 TraesCS2A01G410300 chr2B 84.821 112 9 5 350 461 615897088 615897191 4.630000e-19 106
17 TraesCS2A01G410300 chr7A 90.013 761 53 17 2651 3395 127050892 127051645 0.000000e+00 963
18 TraesCS2A01G410300 chr7A 89.049 347 36 2 1 346 177271289 177270944 2.420000e-116 429
19 TraesCS2A01G410300 chr7A 85.673 349 44 6 1 346 497774931 497775276 2.490000e-96 363
20 TraesCS2A01G410300 chr3A 88.830 761 62 15 2653 3395 692357722 692358477 0.000000e+00 913
21 TraesCS2A01G410300 chr3A 83.662 355 33 14 1 346 676204182 676204520 9.150000e-81 311
22 TraesCS2A01G410300 chr6A 86.917 772 55 24 2651 3395 575485378 575486130 0.000000e+00 824
23 TraesCS2A01G410300 chr6A 86.293 321 36 7 1 313 453872089 453871769 3.240000e-90 342
24 TraesCS2A01G410300 chr6A 84.594 357 33 14 1 346 136935129 136935474 5.430000e-88 335
25 TraesCS2A01G410300 chr4D 88.326 651 61 12 2715 3352 459813515 459814163 0.000000e+00 767
26 TraesCS2A01G410300 chr4D 82.576 528 59 19 2890 3395 509243649 509244165 5.200000e-118 435
27 TraesCS2A01G410300 chr7D 76.027 1168 222 46 1037 2157 573987030 573988186 1.380000e-153 553
28 TraesCS2A01G410300 chr1D 89.107 459 31 9 2653 3102 471966102 471965654 1.380000e-153 553
29 TraesCS2A01G410300 chr5A 89.337 347 35 2 1 346 600473466 600473811 5.200000e-118 435
30 TraesCS2A01G410300 chr5D 84.358 358 34 12 1 346 429740785 429740438 7.020000e-87 331
31 TraesCS2A01G410300 chr4B 90.244 123 8 2 3277 3395 657798889 657798767 1.260000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G410300 chr2A 668010891 668014285 3394 False 6270 6270 100.000 1 3395 1 chr2A.!!$F2 3394
1 TraesCS2A01G410300 chr2A 757830069 757830822 753 True 833 833 87.126 2653 3395 1 chr2A.!!$R2 742
2 TraesCS2A01G410300 chr2A 667942235 667943572 1337 False 595 595 75.313 1037 2353 1 chr2A.!!$F1 1316
3 TraesCS2A01G410300 chr2A 75655170 75656525 1355 True 483 483 73.986 1034 2353 1 chr2A.!!$R1 1319
4 TraesCS2A01G410300 chr2D 522910583 522912817 2234 False 2911 2911 90.348 404 2653 1 chr2D.!!$F4 2249
5 TraesCS2A01G410300 chr2D 522689396 522690724 1328 False 682 682 76.549 1037 2353 1 chr2D.!!$F2 1316
6 TraesCS2A01G410300 chr2D 577608032 577609357 1325 True 616 616 75.648 1040 2353 1 chr2D.!!$R1 1313
7 TraesCS2A01G410300 chr2D 522630303 522631064 761 False 460 460 77.922 1598 2353 1 chr2D.!!$F1 755
8 TraesCS2A01G410300 chr2B 615920237 615922387 2150 False 2896 2896 91.470 526 2614 1 chr2B.!!$F7 2088
9 TraesCS2A01G410300 chr2B 615736052 615737239 1187 False 649 649 77.145 1037 2212 1 chr2B.!!$F3 1175
10 TraesCS2A01G410300 chr2B 615578571 615579172 601 False 453 453 80.395 1752 2353 1 chr2B.!!$F2 601
11 TraesCS2A01G410300 chr7A 127050892 127051645 753 False 963 963 90.013 2651 3395 1 chr7A.!!$F1 744
12 TraesCS2A01G410300 chr3A 692357722 692358477 755 False 913 913 88.830 2653 3395 1 chr3A.!!$F2 742
13 TraesCS2A01G410300 chr6A 575485378 575486130 752 False 824 824 86.917 2651 3395 1 chr6A.!!$F2 744
14 TraesCS2A01G410300 chr4D 459813515 459814163 648 False 767 767 88.326 2715 3352 1 chr4D.!!$F1 637
15 TraesCS2A01G410300 chr4D 509243649 509244165 516 False 435 435 82.576 2890 3395 1 chr4D.!!$F2 505
16 TraesCS2A01G410300 chr7D 573987030 573988186 1156 False 553 553 76.027 1037 2157 1 chr7D.!!$F1 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 356 0.036765 TCGGCCGTTGCTCTTATTGT 60.037 50.0 27.15 0.0 37.74 2.71 F
356 357 0.096976 CGGCCGTTGCTCTTATTGTG 59.903 55.0 19.50 0.0 37.74 3.33 F
1728 1852 0.321830 GCCCGTTAAACCCACTGCTA 60.322 55.0 0.00 0.0 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1933 0.607217 CAAGCCAGTCCATGCACTCA 60.607 55.000 0.00 0.0 0.00 3.41 R
2200 2381 2.066393 CCCGGCTCTTCTCCCATGA 61.066 63.158 0.00 0.0 0.00 3.07 R
2761 2955 1.055405 GCGACGCGAGACATATCGAG 61.055 60.000 15.93 0.0 45.56 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.987777 CAACTGCAAAATGATTTGGTTGA 57.012 34.783 14.84 0.00 43.67 3.18
23 24 5.981174 CAACTGCAAAATGATTTGGTTGAG 58.019 37.500 14.84 4.53 43.67 3.02
24 25 5.280654 ACTGCAAAATGATTTGGTTGAGT 57.719 34.783 0.00 0.00 44.93 3.41
25 26 6.403866 ACTGCAAAATGATTTGGTTGAGTA 57.596 33.333 0.00 0.00 44.93 2.59
26 27 6.996509 ACTGCAAAATGATTTGGTTGAGTAT 58.003 32.000 0.00 0.00 44.93 2.12
27 28 8.121305 ACTGCAAAATGATTTGGTTGAGTATA 57.879 30.769 0.00 0.00 44.93 1.47
28 29 8.752187 ACTGCAAAATGATTTGGTTGAGTATAT 58.248 29.630 0.00 0.00 44.93 0.86
29 30 8.929827 TGCAAAATGATTTGGTTGAGTATATG 57.070 30.769 0.00 0.00 44.93 1.78
30 31 8.530311 TGCAAAATGATTTGGTTGAGTATATGT 58.470 29.630 0.00 0.00 44.93 2.29
31 32 8.810427 GCAAAATGATTTGGTTGAGTATATGTG 58.190 33.333 0.00 0.00 44.93 3.21
32 33 9.304731 CAAAATGATTTGGTTGAGTATATGTGG 57.695 33.333 0.00 0.00 41.81 4.17
33 34 7.587037 AATGATTTGGTTGAGTATATGTGGG 57.413 36.000 0.00 0.00 0.00 4.61
34 35 4.887071 TGATTTGGTTGAGTATATGTGGGC 59.113 41.667 0.00 0.00 0.00 5.36
35 36 4.584638 TTTGGTTGAGTATATGTGGGCT 57.415 40.909 0.00 0.00 0.00 5.19
36 37 3.838244 TGGTTGAGTATATGTGGGCTC 57.162 47.619 0.00 0.00 0.00 4.70
37 38 3.111484 TGGTTGAGTATATGTGGGCTCA 58.889 45.455 0.00 0.00 36.35 4.26
38 39 3.716353 TGGTTGAGTATATGTGGGCTCAT 59.284 43.478 0.00 0.00 37.74 2.90
39 40 4.067896 GGTTGAGTATATGTGGGCTCATG 58.932 47.826 0.00 0.00 37.74 3.07
40 41 4.444876 GGTTGAGTATATGTGGGCTCATGT 60.445 45.833 0.00 2.94 37.74 3.21
41 42 5.126067 GTTGAGTATATGTGGGCTCATGTT 58.874 41.667 0.00 0.00 37.74 2.71
42 43 4.707105 TGAGTATATGTGGGCTCATGTTG 58.293 43.478 0.00 0.00 33.62 3.33
43 44 4.067896 GAGTATATGTGGGCTCATGTTGG 58.932 47.826 0.00 0.00 0.00 3.77
44 45 1.696063 ATATGTGGGCTCATGTTGGC 58.304 50.000 0.00 0.00 0.00 4.52
45 46 0.330941 TATGTGGGCTCATGTTGGCA 59.669 50.000 14.32 0.00 0.00 4.92
46 47 0.542467 ATGTGGGCTCATGTTGGCAA 60.542 50.000 14.32 0.00 0.00 4.52
47 48 1.290009 GTGGGCTCATGTTGGCAAC 59.710 57.895 23.12 23.12 0.00 4.17
48 49 1.907807 TGGGCTCATGTTGGCAACC 60.908 57.895 26.31 10.64 0.00 3.77
49 50 1.907807 GGGCTCATGTTGGCAACCA 60.908 57.895 26.31 15.17 0.00 3.67
50 51 1.470996 GGGCTCATGTTGGCAACCAA 61.471 55.000 26.31 10.36 41.69 3.67
51 52 0.609662 GGCTCATGTTGGCAACCAAT 59.390 50.000 26.31 12.28 45.80 3.16
52 53 1.824230 GGCTCATGTTGGCAACCAATA 59.176 47.619 26.31 9.22 45.80 1.90
53 54 2.233431 GGCTCATGTTGGCAACCAATAA 59.767 45.455 26.31 8.83 45.80 1.40
54 55 3.306641 GGCTCATGTTGGCAACCAATAAA 60.307 43.478 26.31 8.07 45.80 1.40
55 56 4.506758 GCTCATGTTGGCAACCAATAAAT 58.493 39.130 26.31 10.10 45.80 1.40
56 57 4.330620 GCTCATGTTGGCAACCAATAAATG 59.669 41.667 26.31 20.43 45.80 2.32
57 58 5.480642 TCATGTTGGCAACCAATAAATGT 57.519 34.783 26.31 0.10 45.80 2.71
58 59 6.596309 TCATGTTGGCAACCAATAAATGTA 57.404 33.333 26.31 5.08 45.80 2.29
59 60 7.180322 TCATGTTGGCAACCAATAAATGTAT 57.820 32.000 26.31 7.24 45.80 2.29
60 61 8.298729 TCATGTTGGCAACCAATAAATGTATA 57.701 30.769 26.31 4.34 45.80 1.47
61 62 8.922237 TCATGTTGGCAACCAATAAATGTATAT 58.078 29.630 26.31 6.54 45.80 0.86
62 63 9.545105 CATGTTGGCAACCAATAAATGTATATT 57.455 29.630 26.31 0.00 45.80 1.28
63 64 9.762933 ATGTTGGCAACCAATAAATGTATATTC 57.237 29.630 26.31 0.00 45.80 1.75
64 65 8.976353 TGTTGGCAACCAATAAATGTATATTCT 58.024 29.630 26.31 0.00 45.80 2.40
65 66 9.816354 GTTGGCAACCAATAAATGTATATTCTT 57.184 29.630 19.57 0.00 45.80 2.52
87 88 9.522804 TTCTTTTATTCGTTTGCAAAACTATGT 57.477 25.926 14.67 1.14 0.00 2.29
88 89 8.963130 TCTTTTATTCGTTTGCAAAACTATGTG 58.037 29.630 14.67 0.46 0.00 3.21
89 90 8.858003 TTTTATTCGTTTGCAAAACTATGTGA 57.142 26.923 14.67 0.94 0.00 3.58
90 91 8.858003 TTTATTCGTTTGCAAAACTATGTGAA 57.142 26.923 14.67 9.56 0.00 3.18
91 92 8.858003 TTATTCGTTTGCAAAACTATGTGAAA 57.142 26.923 14.67 0.00 0.00 2.69
92 93 6.561945 TTCGTTTGCAAAACTATGTGAAAC 57.438 33.333 14.67 0.00 37.35 2.78
143 144 9.914834 AAACTATACTATTTATTTGAGTGGCCA 57.085 29.630 0.00 0.00 0.00 5.36
144 145 9.561069 AACTATACTATTTATTTGAGTGGCCAG 57.439 33.333 5.11 0.00 0.00 4.85
145 146 8.934697 ACTATACTATTTATTTGAGTGGCCAGA 58.065 33.333 5.11 0.00 0.00 3.86
146 147 9.209175 CTATACTATTTATTTGAGTGGCCAGAC 57.791 37.037 5.11 3.44 0.00 3.51
147 148 6.067217 ACTATTTATTTGAGTGGCCAGACT 57.933 37.500 5.11 0.00 0.00 3.24
148 149 7.195374 ACTATTTATTTGAGTGGCCAGACTA 57.805 36.000 5.11 0.00 0.00 2.59
149 150 7.806180 ACTATTTATTTGAGTGGCCAGACTAT 58.194 34.615 5.11 0.00 0.00 2.12
150 151 8.275040 ACTATTTATTTGAGTGGCCAGACTATT 58.725 33.333 5.11 0.00 0.00 1.73
151 152 7.961326 ATTTATTTGAGTGGCCAGACTATTT 57.039 32.000 5.11 0.00 0.00 1.40
152 153 6.757897 TTATTTGAGTGGCCAGACTATTTG 57.242 37.500 5.11 0.00 0.00 2.32
153 154 2.787473 TGAGTGGCCAGACTATTTGG 57.213 50.000 5.11 0.00 38.78 3.28
163 164 5.957842 CCAGACTATTTGGCTTGTTTACA 57.042 39.130 0.00 0.00 0.00 2.41
164 165 6.515272 CCAGACTATTTGGCTTGTTTACAT 57.485 37.500 0.00 0.00 0.00 2.29
165 166 6.924111 CCAGACTATTTGGCTTGTTTACATT 58.076 36.000 0.00 0.00 0.00 2.71
166 167 7.378181 CCAGACTATTTGGCTTGTTTACATTT 58.622 34.615 0.00 0.00 0.00 2.32
167 168 7.872483 CCAGACTATTTGGCTTGTTTACATTTT 59.128 33.333 0.00 0.00 0.00 1.82
168 169 8.915654 CAGACTATTTGGCTTGTTTACATTTTC 58.084 33.333 0.00 0.00 0.00 2.29
169 170 8.637986 AGACTATTTGGCTTGTTTACATTTTCA 58.362 29.630 0.00 0.00 0.00 2.69
170 171 9.423061 GACTATTTGGCTTGTTTACATTTTCAT 57.577 29.630 0.00 0.00 0.00 2.57
171 172 9.777297 ACTATTTGGCTTGTTTACATTTTCATT 57.223 25.926 0.00 0.00 0.00 2.57
174 175 8.498054 TTTGGCTTGTTTACATTTTCATTTGA 57.502 26.923 0.00 0.00 0.00 2.69
175 176 7.475771 TGGCTTGTTTACATTTTCATTTGAC 57.524 32.000 0.00 0.00 0.00 3.18
176 177 7.044181 TGGCTTGTTTACATTTTCATTTGACA 58.956 30.769 0.00 0.00 0.00 3.58
177 178 7.550551 TGGCTTGTTTACATTTTCATTTGACAA 59.449 29.630 0.00 0.00 0.00 3.18
178 179 8.558700 GGCTTGTTTACATTTTCATTTGACAAT 58.441 29.630 0.00 0.00 0.00 2.71
196 197 8.978564 TTGACAATATGTTAAATGCAAATCGT 57.021 26.923 0.00 0.00 0.00 3.73
197 198 8.392124 TGACAATATGTTAAATGCAAATCGTG 57.608 30.769 0.00 0.00 0.00 4.35
208 209 2.878906 CAAATCGTGCAAAATTGGGC 57.121 45.000 0.00 0.00 0.00 5.36
209 210 1.126479 CAAATCGTGCAAAATTGGGCG 59.874 47.619 0.00 0.00 0.00 6.13
210 211 0.389687 AATCGTGCAAAATTGGGCGG 60.390 50.000 0.00 0.00 0.00 6.13
211 212 2.834034 ATCGTGCAAAATTGGGCGGC 62.834 55.000 0.00 0.00 0.00 6.53
212 213 2.741985 GTGCAAAATTGGGCGGCC 60.742 61.111 23.42 23.42 0.00 6.13
213 214 3.236987 TGCAAAATTGGGCGGCCA 61.237 55.556 29.27 29.27 0.00 5.36
214 215 2.741985 GCAAAATTGGGCGGCCAC 60.742 61.111 32.91 14.73 0.00 5.01
215 216 2.432285 CAAAATTGGGCGGCCACG 60.432 61.111 32.91 12.99 44.63 4.94
227 228 3.952675 GCCACGCCGCCACATATG 61.953 66.667 0.00 0.00 0.00 1.78
241 242 4.502171 CACATATGGATTGGCGCATTAA 57.498 40.909 10.83 0.83 0.00 1.40
242 243 4.869215 CACATATGGATTGGCGCATTAAA 58.131 39.130 10.83 0.00 0.00 1.52
243 244 4.681025 CACATATGGATTGGCGCATTAAAC 59.319 41.667 10.83 0.00 0.00 2.01
244 245 4.340666 ACATATGGATTGGCGCATTAAACA 59.659 37.500 10.83 0.38 0.00 2.83
245 246 5.010922 ACATATGGATTGGCGCATTAAACAT 59.989 36.000 10.83 8.77 0.00 2.71
246 247 3.162202 TGGATTGGCGCATTAAACATG 57.838 42.857 10.83 0.00 0.00 3.21
247 248 2.495270 TGGATTGGCGCATTAAACATGT 59.505 40.909 10.83 0.00 0.00 3.21
248 249 3.056250 TGGATTGGCGCATTAAACATGTT 60.056 39.130 10.83 4.92 0.00 2.71
249 250 3.306703 GGATTGGCGCATTAAACATGTTG 59.693 43.478 12.82 0.78 0.00 3.33
250 251 1.707632 TGGCGCATTAAACATGTTGC 58.292 45.000 12.82 11.03 0.00 4.17
251 252 0.998669 GGCGCATTAAACATGTTGCC 59.001 50.000 12.82 15.18 36.25 4.52
252 253 0.639756 GCGCATTAAACATGTTGCCG 59.360 50.000 12.82 11.24 0.00 5.69
253 254 1.730772 GCGCATTAAACATGTTGCCGA 60.731 47.619 12.82 0.00 0.00 5.54
254 255 1.910819 CGCATTAAACATGTTGCCGAC 59.089 47.619 12.82 1.60 0.00 4.79
255 256 2.258755 GCATTAAACATGTTGCCGACC 58.741 47.619 12.82 0.00 0.00 4.79
256 257 2.874849 CATTAAACATGTTGCCGACCC 58.125 47.619 12.82 0.00 0.00 4.46
257 258 1.982660 TTAAACATGTTGCCGACCCA 58.017 45.000 12.82 0.00 0.00 4.51
258 259 2.208132 TAAACATGTTGCCGACCCAT 57.792 45.000 12.82 0.00 0.00 4.00
259 260 2.208132 AAACATGTTGCCGACCCATA 57.792 45.000 12.82 0.00 0.00 2.74
260 261 2.435372 AACATGTTGCCGACCCATAT 57.565 45.000 11.07 0.00 0.00 1.78
261 262 2.435372 ACATGTTGCCGACCCATATT 57.565 45.000 0.00 0.00 0.00 1.28
262 263 3.569194 ACATGTTGCCGACCCATATTA 57.431 42.857 0.00 0.00 0.00 0.98
263 264 3.892284 ACATGTTGCCGACCCATATTAA 58.108 40.909 0.00 0.00 0.00 1.40
264 265 4.274147 ACATGTTGCCGACCCATATTAAA 58.726 39.130 0.00 0.00 0.00 1.52
265 266 4.707448 ACATGTTGCCGACCCATATTAAAA 59.293 37.500 0.00 0.00 0.00 1.52
266 267 5.186021 ACATGTTGCCGACCCATATTAAAAA 59.814 36.000 0.00 0.00 0.00 1.94
267 268 5.923733 TGTTGCCGACCCATATTAAAAAT 57.076 34.783 0.00 0.00 0.00 1.82
268 269 7.068839 ACATGTTGCCGACCCATATTAAAAATA 59.931 33.333 0.00 0.00 0.00 1.40
269 270 7.033530 TGTTGCCGACCCATATTAAAAATAG 57.966 36.000 0.00 0.00 0.00 1.73
270 271 6.039941 TGTTGCCGACCCATATTAAAAATAGG 59.960 38.462 0.00 0.00 0.00 2.57
271 272 5.942961 TGCCGACCCATATTAAAAATAGGA 58.057 37.500 0.00 0.00 0.00 2.94
272 273 5.766174 TGCCGACCCATATTAAAAATAGGAC 59.234 40.000 0.00 0.00 0.00 3.85
273 274 5.106830 GCCGACCCATATTAAAAATAGGACG 60.107 44.000 0.00 0.00 0.00 4.79
274 275 5.410439 CCGACCCATATTAAAAATAGGACGG 59.590 44.000 12.07 12.07 33.00 4.79
275 276 6.225318 CGACCCATATTAAAAATAGGACGGA 58.775 40.000 0.00 0.00 0.00 4.69
276 277 6.146673 CGACCCATATTAAAAATAGGACGGAC 59.853 42.308 0.00 0.00 0.00 4.79
277 278 5.993441 ACCCATATTAAAAATAGGACGGACG 59.007 40.000 0.00 0.00 0.00 4.79
278 279 5.993441 CCCATATTAAAAATAGGACGGACGT 59.007 40.000 0.00 0.00 0.00 4.34
279 280 6.146673 CCCATATTAAAAATAGGACGGACGTC 59.853 42.308 15.90 15.90 43.87 4.34
280 281 6.129009 CCATATTAAAAATAGGACGGACGTCG 60.129 42.308 17.35 7.64 45.41 5.12
281 282 2.000429 AAAAATAGGACGGACGTCGG 58.000 50.000 20.28 20.28 45.41 4.79
282 283 0.174162 AAAATAGGACGGACGTCGGG 59.826 55.000 24.65 14.74 45.41 5.14
283 284 2.288788 AAATAGGACGGACGTCGGGC 62.289 60.000 24.65 22.51 45.41 6.13
284 285 4.720902 TAGGACGGACGTCGGGCA 62.721 66.667 27.73 8.05 45.41 5.36
304 305 3.719144 CGGCCGACCCAAACGAAC 61.719 66.667 24.07 0.00 0.00 3.95
305 306 2.592287 GGCCGACCCAAACGAACA 60.592 61.111 0.00 0.00 0.00 3.18
306 307 2.188161 GGCCGACCCAAACGAACAA 61.188 57.895 0.00 0.00 0.00 2.83
307 308 1.726533 GGCCGACCCAAACGAACAAA 61.727 55.000 0.00 0.00 0.00 2.83
308 309 0.100861 GCCGACCCAAACGAACAAAA 59.899 50.000 0.00 0.00 0.00 2.44
309 310 1.469423 GCCGACCCAAACGAACAAAAA 60.469 47.619 0.00 0.00 0.00 1.94
325 326 2.309898 AAAAACAGACGAAATCGCCG 57.690 45.000 2.15 0.00 44.43 6.46
326 327 1.223187 AAAACAGACGAAATCGCCGT 58.777 45.000 2.15 0.00 44.43 5.68
327 328 1.223187 AAACAGACGAAATCGCCGTT 58.777 45.000 2.15 1.42 44.43 4.44
328 329 1.223187 AACAGACGAAATCGCCGTTT 58.777 45.000 2.15 0.00 44.43 3.60
329 330 0.511221 ACAGACGAAATCGCCGTTTG 59.489 50.000 2.15 0.00 44.38 2.93
330 331 0.511221 CAGACGAAATCGCCGTTTGT 59.489 50.000 2.15 0.00 44.43 2.83
331 332 1.070175 CAGACGAAATCGCCGTTTGTT 60.070 47.619 2.15 0.00 44.43 2.83
332 333 1.600485 AGACGAAATCGCCGTTTGTTT 59.400 42.857 2.15 0.00 44.43 2.83
333 334 1.706597 GACGAAATCGCCGTTTGTTTG 59.293 47.619 2.15 0.00 44.43 2.93
334 335 1.049251 CGAAATCGCCGTTTGTTTGG 58.951 50.000 0.00 0.00 0.00 3.28
335 336 1.414378 GAAATCGCCGTTTGTTTGGG 58.586 50.000 0.00 0.00 0.00 4.12
336 337 0.747852 AAATCGCCGTTTGTTTGGGT 59.252 45.000 0.00 0.00 0.00 4.51
337 338 0.312729 AATCGCCGTTTGTTTGGGTC 59.687 50.000 0.00 0.00 0.00 4.46
338 339 1.847890 ATCGCCGTTTGTTTGGGTCG 61.848 55.000 0.00 0.00 0.00 4.79
339 340 2.333581 GCCGTTTGTTTGGGTCGG 59.666 61.111 0.00 0.00 43.37 4.79
340 341 2.333581 CCGTTTGTTTGGGTCGGC 59.666 61.111 0.00 0.00 35.01 5.54
341 342 2.333581 CGTTTGTTTGGGTCGGCC 59.666 61.111 0.00 0.00 0.00 6.13
342 343 2.333581 GTTTGTTTGGGTCGGCCG 59.666 61.111 22.12 22.12 34.97 6.13
343 344 2.124236 TTTGTTTGGGTCGGCCGT 60.124 55.556 27.15 0.00 34.97 5.68
344 345 1.753463 TTTGTTTGGGTCGGCCGTT 60.753 52.632 27.15 0.00 34.97 4.44
345 346 2.005960 TTTGTTTGGGTCGGCCGTTG 62.006 55.000 27.15 0.00 34.97 4.10
346 347 4.337060 GTTTGGGTCGGCCGTTGC 62.337 66.667 27.15 16.23 34.97 4.17
347 348 4.572571 TTTGGGTCGGCCGTTGCT 62.573 61.111 27.15 0.00 37.74 3.91
350 351 4.699522 GGGTCGGCCGTTGCTCTT 62.700 66.667 27.15 0.00 37.74 2.85
351 352 2.263540 GGTCGGCCGTTGCTCTTA 59.736 61.111 27.15 0.00 37.74 2.10
352 353 1.153429 GGTCGGCCGTTGCTCTTAT 60.153 57.895 27.15 0.00 37.74 1.73
353 354 0.743345 GGTCGGCCGTTGCTCTTATT 60.743 55.000 27.15 0.00 37.74 1.40
354 355 0.373716 GTCGGCCGTTGCTCTTATTG 59.626 55.000 27.15 0.00 37.74 1.90
355 356 0.036765 TCGGCCGTTGCTCTTATTGT 60.037 50.000 27.15 0.00 37.74 2.71
356 357 0.096976 CGGCCGTTGCTCTTATTGTG 59.903 55.000 19.50 0.00 37.74 3.33
357 358 1.165270 GGCCGTTGCTCTTATTGTGT 58.835 50.000 0.00 0.00 37.74 3.72
358 359 2.352388 GGCCGTTGCTCTTATTGTGTA 58.648 47.619 0.00 0.00 37.74 2.90
359 360 2.745281 GGCCGTTGCTCTTATTGTGTAA 59.255 45.455 0.00 0.00 37.74 2.41
360 361 3.189702 GGCCGTTGCTCTTATTGTGTAAA 59.810 43.478 0.00 0.00 37.74 2.01
361 362 4.403453 GCCGTTGCTCTTATTGTGTAAAG 58.597 43.478 0.00 0.00 33.53 1.85
362 363 4.083484 GCCGTTGCTCTTATTGTGTAAAGT 60.083 41.667 0.00 0.00 33.53 2.66
363 364 5.121142 GCCGTTGCTCTTATTGTGTAAAGTA 59.879 40.000 0.00 0.00 33.53 2.24
364 365 6.531439 CCGTTGCTCTTATTGTGTAAAGTAC 58.469 40.000 0.00 0.00 0.00 2.73
365 366 6.146510 CCGTTGCTCTTATTGTGTAAAGTACA 59.853 38.462 0.00 0.00 36.08 2.90
366 367 7.307514 CCGTTGCTCTTATTGTGTAAAGTACAA 60.308 37.037 0.00 0.00 40.93 2.41
367 368 8.227791 CGTTGCTCTTATTGTGTAAAGTACAAT 58.772 33.333 8.23 8.23 46.95 2.71
368 369 9.329913 GTTGCTCTTATTGTGTAAAGTACAATG 57.670 33.333 12.21 0.00 45.49 2.82
369 370 8.615878 TGCTCTTATTGTGTAAAGTACAATGT 57.384 30.769 12.21 0.00 45.49 2.71
370 371 9.713713 TGCTCTTATTGTGTAAAGTACAATGTA 57.286 29.630 12.21 0.00 45.49 2.29
398 399 8.223177 AGATGAAGAAGATTAATTCAAGCAGG 57.777 34.615 0.00 0.00 36.59 4.85
399 400 6.199937 TGAAGAAGATTAATTCAAGCAGGC 57.800 37.500 0.00 0.00 30.33 4.85
400 401 4.889832 AGAAGATTAATTCAAGCAGGCG 57.110 40.909 0.00 0.00 0.00 5.52
401 402 4.517285 AGAAGATTAATTCAAGCAGGCGA 58.483 39.130 0.00 0.00 0.00 5.54
402 403 4.574013 AGAAGATTAATTCAAGCAGGCGAG 59.426 41.667 0.00 0.00 0.00 5.03
433 434 2.193536 ACGTGCAAACCTTCCAGCC 61.194 57.895 0.00 0.00 0.00 4.85
434 435 2.919494 CGTGCAAACCTTCCAGCCC 61.919 63.158 0.00 0.00 0.00 5.19
435 436 2.597217 TGCAAACCTTCCAGCCCG 60.597 61.111 0.00 0.00 0.00 6.13
436 437 4.056125 GCAAACCTTCCAGCCCGC 62.056 66.667 0.00 0.00 0.00 6.13
439 440 4.660938 AACCTTCCAGCCCGCACC 62.661 66.667 0.00 0.00 0.00 5.01
494 496 6.706055 TTTTTACACTCGCTCTGTCATTAG 57.294 37.500 0.00 0.00 0.00 1.73
495 497 5.638596 TTTACACTCGCTCTGTCATTAGA 57.361 39.130 0.00 0.00 0.00 2.10
496 498 5.836821 TTACACTCGCTCTGTCATTAGAT 57.163 39.130 0.00 0.00 0.00 1.98
497 499 4.039151 ACACTCGCTCTGTCATTAGATG 57.961 45.455 0.00 0.00 0.00 2.90
504 506 3.674281 GCTCTGTCATTAGATGCTCGATG 59.326 47.826 0.00 0.00 0.00 3.84
505 507 4.558296 GCTCTGTCATTAGATGCTCGATGA 60.558 45.833 0.00 0.00 0.00 2.92
507 509 5.284864 TCTGTCATTAGATGCTCGATGAAC 58.715 41.667 0.00 0.00 30.05 3.18
514 516 0.532573 ATGCTCGATGAACACGGTCT 59.467 50.000 0.00 0.00 0.00 3.85
524 526 0.396435 AACACGGTCTGATTCAGCCA 59.604 50.000 20.08 0.64 31.42 4.75
544 546 3.181469 CCATTCCTCAAAAGGCATGATGG 60.181 47.826 5.78 4.39 45.97 3.51
546 548 2.726821 TCCTCAAAAGGCATGATGGTC 58.273 47.619 0.00 0.00 43.02 4.02
559 561 4.321718 CATGATGGTCGGAGATGCTTTAT 58.678 43.478 0.00 0.00 40.67 1.40
587 589 2.584835 ATATGCATACCCGGCAATGT 57.415 45.000 8.99 1.69 45.60 2.71
602 604 2.223203 GCAATGTCTCACATGCTACAGC 60.223 50.000 0.00 0.00 37.97 4.40
603 605 2.322355 ATGTCTCACATGCTACAGCC 57.678 50.000 0.00 0.00 37.45 4.85
604 606 1.269958 TGTCTCACATGCTACAGCCT 58.730 50.000 0.00 0.00 41.18 4.58
606 608 2.166459 TGTCTCACATGCTACAGCCTAC 59.834 50.000 0.00 0.00 41.18 3.18
608 610 2.428530 TCTCACATGCTACAGCCTACAG 59.571 50.000 0.00 0.00 41.18 2.74
609 611 2.428530 CTCACATGCTACAGCCTACAGA 59.571 50.000 0.00 0.00 41.18 3.41
611 613 2.932614 CACATGCTACAGCCTACAGAAC 59.067 50.000 0.00 0.00 41.18 3.01
613 615 3.007940 ACATGCTACAGCCTACAGAACAA 59.992 43.478 0.00 0.00 41.18 2.83
614 616 3.762407 TGCTACAGCCTACAGAACAAA 57.238 42.857 0.00 0.00 41.18 2.83
615 617 3.399330 TGCTACAGCCTACAGAACAAAC 58.601 45.455 0.00 0.00 41.18 2.93
616 618 2.742589 GCTACAGCCTACAGAACAAACC 59.257 50.000 0.00 0.00 34.31 3.27
618 620 3.290948 ACAGCCTACAGAACAAACCAA 57.709 42.857 0.00 0.00 0.00 3.67
619 621 3.214328 ACAGCCTACAGAACAAACCAAG 58.786 45.455 0.00 0.00 0.00 3.61
620 622 3.118038 ACAGCCTACAGAACAAACCAAGA 60.118 43.478 0.00 0.00 0.00 3.02
621 623 3.251004 CAGCCTACAGAACAAACCAAGAC 59.749 47.826 0.00 0.00 0.00 3.01
663 666 0.391263 CTTACTTTTCTCCCGGCGCT 60.391 55.000 7.64 0.00 0.00 5.92
715 720 3.184683 CGGCAGCGTCTCTCAAGC 61.185 66.667 0.00 0.00 0.00 4.01
716 721 2.264166 GGCAGCGTCTCTCAAGCT 59.736 61.111 0.00 0.00 42.64 3.74
717 722 1.809209 GGCAGCGTCTCTCAAGCTC 60.809 63.158 0.00 0.00 39.48 4.09
718 723 1.215117 GCAGCGTCTCTCAAGCTCT 59.785 57.895 0.00 0.00 39.48 4.09
719 724 0.801836 GCAGCGTCTCTCAAGCTCTC 60.802 60.000 0.00 0.00 39.48 3.20
720 725 0.525311 CAGCGTCTCTCAAGCTCTCA 59.475 55.000 0.00 0.00 39.48 3.27
721 726 1.067985 CAGCGTCTCTCAAGCTCTCAA 60.068 52.381 0.00 0.00 39.48 3.02
722 727 1.202114 AGCGTCTCTCAAGCTCTCAAG 59.798 52.381 0.00 0.00 36.33 3.02
768 796 1.110442 ATCTCTCAAGGACAGAGGCG 58.890 55.000 0.00 0.00 38.39 5.52
834 866 4.098044 ACCCACGTACATCTACAGAATGAG 59.902 45.833 0.00 0.00 39.69 2.90
844 876 6.384015 ACATCTACAGAATGAGTAATGGGACA 59.616 38.462 0.00 0.00 41.82 4.02
859 891 2.654877 ACAGGCTAACGTGTCCCG 59.345 61.111 0.00 0.00 40.82 5.14
861 893 2.602568 AGGCTAACGTGTCCCGGT 60.603 61.111 0.00 0.00 42.24 5.28
862 894 2.125793 GGCTAACGTGTCCCGGTC 60.126 66.667 0.00 0.00 42.24 4.79
863 895 2.652530 GCTAACGTGTCCCGGTCA 59.347 61.111 0.00 0.00 42.24 4.02
864 896 1.445582 GCTAACGTGTCCCGGTCAG 60.446 63.158 0.00 0.00 42.24 3.51
865 897 1.445582 CTAACGTGTCCCGGTCAGC 60.446 63.158 0.00 0.00 42.24 4.26
866 898 2.830704 CTAACGTGTCCCGGTCAGCC 62.831 65.000 0.00 0.00 42.24 4.85
876 933 4.314440 GGTCAGCCGGCAGTCACA 62.314 66.667 31.54 0.42 0.00 3.58
890 947 1.423541 AGTCACACCCCTACAAATGCA 59.576 47.619 0.00 0.00 0.00 3.96
927 991 4.323417 TGTGGTATGCAGAACCTGTAAAG 58.677 43.478 18.89 0.00 37.91 1.85
929 993 4.631813 GTGGTATGCAGAACCTGTAAAGAG 59.368 45.833 18.89 0.00 37.91 2.85
932 996 3.402628 TGCAGAACCTGTAAAGAGGTC 57.597 47.619 0.00 0.00 46.29 3.85
934 998 2.338500 CAGAACCTGTAAAGAGGTCGC 58.662 52.381 0.00 0.00 46.29 5.19
1571 1659 2.819595 CACCGAGGCGTTCATGGG 60.820 66.667 0.00 0.00 0.00 4.00
1728 1852 0.321830 GCCCGTTAAACCCACTGCTA 60.322 55.000 0.00 0.00 0.00 3.49
2100 2281 2.683572 TCGCTGCTGGAAGGGCTA 60.684 61.111 0.00 0.00 0.00 3.93
2200 2381 2.797278 GCCGGGATCGTCATGAGGT 61.797 63.158 14.67 3.12 33.95 3.85
2379 2560 1.519455 CATGGAGGAGTTCGTCGCC 60.519 63.158 0.00 0.00 36.23 5.54
2424 2605 5.122239 TGATTGGCGTCAATAAACTCTGAAG 59.878 40.000 16.53 0.00 43.08 3.02
2471 2654 2.263077 CGTCAATCAGAGCAGTACACC 58.737 52.381 0.00 0.00 0.00 4.16
2523 2706 4.432503 CGTTCGTAGATTTGTTTCCTGTCG 60.433 45.833 0.00 0.00 35.04 4.35
2588 2779 2.369257 ATCCGTGGTCCTAGCATGCG 62.369 60.000 13.01 0.00 31.64 4.73
2713 2906 4.041567 TGTCACATCTAACTTGTCCACCAT 59.958 41.667 0.00 0.00 0.00 3.55
2729 2923 3.415212 CACCATATGATAAGGGGCTGTG 58.585 50.000 3.65 0.00 0.00 3.66
2751 2945 7.421599 TGTGAGATTCGTGCAAAATTCTTTTA 58.578 30.769 0.00 0.00 0.00 1.52
2761 2955 7.630606 CGTGCAAAATTCTTTTAGTTTGTGTTC 59.369 33.333 0.00 0.00 34.24 3.18
2785 2979 1.856802 TATGTCTCGCGTCGCTAGTA 58.143 50.000 17.19 9.21 0.00 1.82
2793 2987 0.238817 GCGTCGCTAGTATCCCTCTG 59.761 60.000 10.68 0.00 0.00 3.35
2795 2989 1.814634 CGTCGCTAGTATCCCTCTGGT 60.815 57.143 0.00 0.00 0.00 4.00
2799 2993 1.616374 GCTAGTATCCCTCTGGTCTGC 59.384 57.143 0.00 0.00 0.00 4.26
2917 3117 1.248486 GTTCAGGTCTGGGCCTTTTC 58.752 55.000 4.53 0.00 36.58 2.29
2966 3166 9.705290 TTTGTTTATCCTGAGCCTTTTTATTTC 57.295 29.630 0.00 0.00 0.00 2.17
3004 3205 9.788960 GTGTTTATTAGAAATTGAGTCAATCCC 57.211 33.333 18.52 12.80 32.43 3.85
3015 3216 5.246981 TGAGTCAATCCCAAATCTCTTGT 57.753 39.130 0.00 0.00 0.00 3.16
3037 3238 0.549950 CTTCTGCTCCCATCCACCAT 59.450 55.000 0.00 0.00 0.00 3.55
3039 3240 1.891933 TCTGCTCCCATCCACCATTA 58.108 50.000 0.00 0.00 0.00 1.90
3074 3287 5.001232 TCTCACATTCCCCTTTTTCTTACG 58.999 41.667 0.00 0.00 0.00 3.18
3086 3300 7.497909 CCCCTTTTTCTTACGCTCTTATCATTA 59.502 37.037 0.00 0.00 0.00 1.90
3205 3439 2.743664 CAACATTTGCAGTCGAGATCCA 59.256 45.455 0.00 0.00 0.00 3.41
3214 3448 3.686726 GCAGTCGAGATCCACAAGAAATT 59.313 43.478 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.673514 ACTCAACCAAATCATTTTGCAGTT 58.326 33.333 0.00 0.00 40.77 3.16
2 3 5.280654 ACTCAACCAAATCATTTTGCAGT 57.719 34.783 0.00 0.00 40.77 4.40
5 6 8.810427 CACATATACTCAACCAAATCATTTTGC 58.190 33.333 0.00 0.00 40.77 3.68
6 7 9.304731 CCACATATACTCAACCAAATCATTTTG 57.695 33.333 0.00 0.00 41.59 2.44
7 8 8.477256 CCCACATATACTCAACCAAATCATTTT 58.523 33.333 0.00 0.00 0.00 1.82
8 9 7.417797 GCCCACATATACTCAACCAAATCATTT 60.418 37.037 0.00 0.00 0.00 2.32
9 10 6.040842 GCCCACATATACTCAACCAAATCATT 59.959 38.462 0.00 0.00 0.00 2.57
10 11 5.536161 GCCCACATATACTCAACCAAATCAT 59.464 40.000 0.00 0.00 0.00 2.45
11 12 4.887071 GCCCACATATACTCAACCAAATCA 59.113 41.667 0.00 0.00 0.00 2.57
12 13 5.133221 AGCCCACATATACTCAACCAAATC 58.867 41.667 0.00 0.00 0.00 2.17
13 14 5.129368 AGCCCACATATACTCAACCAAAT 57.871 39.130 0.00 0.00 0.00 2.32
14 15 4.018870 TGAGCCCACATATACTCAACCAAA 60.019 41.667 0.00 0.00 36.27 3.28
15 16 3.521531 TGAGCCCACATATACTCAACCAA 59.478 43.478 0.00 0.00 36.27 3.67
16 17 3.111484 TGAGCCCACATATACTCAACCA 58.889 45.455 0.00 0.00 36.27 3.67
17 18 3.838244 TGAGCCCACATATACTCAACC 57.162 47.619 0.00 0.00 36.27 3.77
18 19 4.708177 ACATGAGCCCACATATACTCAAC 58.292 43.478 0.00 0.00 42.08 3.18
19 20 5.125356 CAACATGAGCCCACATATACTCAA 58.875 41.667 0.00 0.00 42.08 3.02
20 21 4.444733 CCAACATGAGCCCACATATACTCA 60.445 45.833 0.00 0.00 42.89 3.41
21 22 4.067896 CCAACATGAGCCCACATATACTC 58.932 47.826 0.00 0.00 0.00 2.59
22 23 3.748668 GCCAACATGAGCCCACATATACT 60.749 47.826 0.00 0.00 0.00 2.12
23 24 2.554032 GCCAACATGAGCCCACATATAC 59.446 50.000 0.00 0.00 0.00 1.47
24 25 2.174424 TGCCAACATGAGCCCACATATA 59.826 45.455 0.00 0.00 0.00 0.86
25 26 1.063792 TGCCAACATGAGCCCACATAT 60.064 47.619 0.00 0.00 0.00 1.78
26 27 0.330941 TGCCAACATGAGCCCACATA 59.669 50.000 0.00 0.00 0.00 2.29
27 28 0.542467 TTGCCAACATGAGCCCACAT 60.542 50.000 0.00 0.00 0.00 3.21
28 29 1.152589 TTGCCAACATGAGCCCACA 60.153 52.632 0.00 0.00 0.00 4.17
29 30 1.290009 GTTGCCAACATGAGCCCAC 59.710 57.895 1.91 0.00 0.00 4.61
30 31 1.907807 GGTTGCCAACATGAGCCCA 60.908 57.895 10.18 0.00 0.00 5.36
31 32 1.470996 TTGGTTGCCAACATGAGCCC 61.471 55.000 10.18 0.00 38.75 5.19
32 33 0.609662 ATTGGTTGCCAACATGAGCC 59.390 50.000 10.18 0.00 46.95 4.70
33 34 3.591196 TTATTGGTTGCCAACATGAGC 57.409 42.857 10.18 0.00 46.95 4.26
34 35 5.481105 ACATTTATTGGTTGCCAACATGAG 58.519 37.500 10.18 6.70 46.95 2.90
35 36 5.480642 ACATTTATTGGTTGCCAACATGA 57.519 34.783 10.18 0.00 46.95 3.07
36 37 9.545105 AATATACATTTATTGGTTGCCAACATG 57.455 29.630 10.18 5.90 46.95 3.21
37 38 9.762933 GAATATACATTTATTGGTTGCCAACAT 57.237 29.630 10.18 0.00 46.95 2.71
38 39 8.976353 AGAATATACATTTATTGGTTGCCAACA 58.024 29.630 10.18 0.00 46.95 3.33
39 40 9.816354 AAGAATATACATTTATTGGTTGCCAAC 57.184 29.630 0.00 0.00 46.95 3.77
61 62 9.522804 ACATAGTTTTGCAAACGAATAAAAGAA 57.477 25.926 12.39 0.00 0.00 2.52
62 63 8.963130 CACATAGTTTTGCAAACGAATAAAAGA 58.037 29.630 12.39 0.00 0.00 2.52
63 64 8.963130 TCACATAGTTTTGCAAACGAATAAAAG 58.037 29.630 12.39 0.31 0.00 2.27
64 65 8.858003 TCACATAGTTTTGCAAACGAATAAAA 57.142 26.923 12.39 0.00 0.00 1.52
65 66 8.858003 TTCACATAGTTTTGCAAACGAATAAA 57.142 26.923 12.39 0.00 0.00 1.40
66 67 8.747666 GTTTCACATAGTTTTGCAAACGAATAA 58.252 29.630 12.39 0.00 0.00 1.40
67 68 7.915923 TGTTTCACATAGTTTTGCAAACGAATA 59.084 29.630 12.39 2.21 0.00 1.75
68 69 6.754209 TGTTTCACATAGTTTTGCAAACGAAT 59.246 30.769 12.39 0.00 0.00 3.34
69 70 6.093404 TGTTTCACATAGTTTTGCAAACGAA 58.907 32.000 12.39 0.00 0.00 3.85
70 71 5.641709 TGTTTCACATAGTTTTGCAAACGA 58.358 33.333 12.39 4.34 0.00 3.85
71 72 5.940603 TGTTTCACATAGTTTTGCAAACG 57.059 34.783 12.39 0.96 0.00 3.60
72 73 9.553418 AAAAATGTTTCACATAGTTTTGCAAAC 57.447 25.926 12.39 7.48 37.97 2.93
117 118 9.914834 TGGCCACTCAAATAAATAGTATAGTTT 57.085 29.630 0.00 0.00 28.73 2.66
118 119 9.561069 CTGGCCACTCAAATAAATAGTATAGTT 57.439 33.333 0.00 0.00 31.73 2.24
119 120 8.934697 TCTGGCCACTCAAATAAATAGTATAGT 58.065 33.333 0.00 0.00 0.00 2.12
120 121 9.209175 GTCTGGCCACTCAAATAAATAGTATAG 57.791 37.037 0.00 0.00 0.00 1.31
121 122 8.934697 AGTCTGGCCACTCAAATAAATAGTATA 58.065 33.333 0.00 0.00 0.00 1.47
122 123 7.806180 AGTCTGGCCACTCAAATAAATAGTAT 58.194 34.615 0.00 0.00 0.00 2.12
123 124 7.195374 AGTCTGGCCACTCAAATAAATAGTA 57.805 36.000 0.00 0.00 0.00 1.82
124 125 6.067217 AGTCTGGCCACTCAAATAAATAGT 57.933 37.500 0.00 0.00 0.00 2.12
125 126 8.682936 AATAGTCTGGCCACTCAAATAAATAG 57.317 34.615 0.00 0.00 0.00 1.73
126 127 8.902806 CAAATAGTCTGGCCACTCAAATAAATA 58.097 33.333 0.00 0.00 0.00 1.40
127 128 7.147846 CCAAATAGTCTGGCCACTCAAATAAAT 60.148 37.037 0.00 0.00 0.00 1.40
128 129 6.152661 CCAAATAGTCTGGCCACTCAAATAAA 59.847 38.462 0.00 0.00 0.00 1.40
129 130 5.652014 CCAAATAGTCTGGCCACTCAAATAA 59.348 40.000 0.00 0.00 0.00 1.40
130 131 5.192927 CCAAATAGTCTGGCCACTCAAATA 58.807 41.667 0.00 0.00 0.00 1.40
131 132 4.019174 CCAAATAGTCTGGCCACTCAAAT 58.981 43.478 0.00 0.00 0.00 2.32
132 133 3.420893 CCAAATAGTCTGGCCACTCAAA 58.579 45.455 0.00 0.00 0.00 2.69
133 134 3.071874 CCAAATAGTCTGGCCACTCAA 57.928 47.619 0.00 0.00 0.00 3.02
134 135 2.787473 CCAAATAGTCTGGCCACTCA 57.213 50.000 0.00 0.00 0.00 3.41
141 142 5.957842 TGTAAACAAGCCAAATAGTCTGG 57.042 39.130 0.00 0.00 36.99 3.86
142 143 8.816640 AAAATGTAAACAAGCCAAATAGTCTG 57.183 30.769 0.00 0.00 0.00 3.51
143 144 8.637986 TGAAAATGTAAACAAGCCAAATAGTCT 58.362 29.630 0.00 0.00 0.00 3.24
144 145 8.810652 TGAAAATGTAAACAAGCCAAATAGTC 57.189 30.769 0.00 0.00 0.00 2.59
145 146 9.777297 AATGAAAATGTAAACAAGCCAAATAGT 57.223 25.926 0.00 0.00 0.00 2.12
148 149 9.118300 TCAAATGAAAATGTAAACAAGCCAAAT 57.882 25.926 0.00 0.00 0.00 2.32
149 150 8.394121 GTCAAATGAAAATGTAAACAAGCCAAA 58.606 29.630 0.00 0.00 0.00 3.28
150 151 7.550551 TGTCAAATGAAAATGTAAACAAGCCAA 59.449 29.630 0.00 0.00 0.00 4.52
151 152 7.044181 TGTCAAATGAAAATGTAAACAAGCCA 58.956 30.769 0.00 0.00 0.00 4.75
152 153 7.475771 TGTCAAATGAAAATGTAAACAAGCC 57.524 32.000 0.00 0.00 0.00 4.35
170 171 9.416794 ACGATTTGCATTTAACATATTGTCAAA 57.583 25.926 0.00 0.00 0.00 2.69
171 172 8.858186 CACGATTTGCATTTAACATATTGTCAA 58.142 29.630 0.00 0.00 0.00 3.18
172 173 8.392124 CACGATTTGCATTTAACATATTGTCA 57.608 30.769 0.00 0.00 0.00 3.58
189 190 1.126479 CGCCCAATTTTGCACGATTTG 59.874 47.619 0.00 0.00 0.00 2.32
190 191 1.427435 CGCCCAATTTTGCACGATTT 58.573 45.000 0.00 0.00 0.00 2.17
191 192 0.389687 CCGCCCAATTTTGCACGATT 60.390 50.000 0.00 0.00 0.00 3.34
192 193 1.215117 CCGCCCAATTTTGCACGAT 59.785 52.632 0.00 0.00 0.00 3.73
193 194 2.647875 CCGCCCAATTTTGCACGA 59.352 55.556 0.00 0.00 0.00 4.35
194 195 3.111442 GCCGCCCAATTTTGCACG 61.111 61.111 0.00 0.00 0.00 5.34
195 196 2.741985 GGCCGCCCAATTTTGCAC 60.742 61.111 0.00 0.00 0.00 4.57
196 197 3.236987 TGGCCGCCCAATTTTGCA 61.237 55.556 7.03 0.00 38.46 4.08
197 198 2.741985 GTGGCCGCCCAATTTTGC 60.742 61.111 4.45 0.00 44.33 3.68
198 199 2.432285 CGTGGCCGCCCAATTTTG 60.432 61.111 11.56 0.00 44.33 2.44
210 211 3.952675 CATATGTGGCGGCGTGGC 61.953 66.667 9.37 0.00 45.12 5.01
211 212 3.279116 CCATATGTGGCGGCGTGG 61.279 66.667 9.37 1.81 39.01 4.94
212 213 1.165907 AATCCATATGTGGCGGCGTG 61.166 55.000 9.37 0.00 45.63 5.34
213 214 1.148273 AATCCATATGTGGCGGCGT 59.852 52.632 9.37 0.00 45.63 5.68
214 215 1.575922 CAATCCATATGTGGCGGCG 59.424 57.895 0.51 0.51 45.63 6.46
215 216 1.959085 CCAATCCATATGTGGCGGC 59.041 57.895 3.06 0.00 45.63 6.53
220 221 4.502171 TTAATGCGCCAATCCATATGTG 57.498 40.909 4.18 0.00 0.00 3.21
221 222 4.340666 TGTTTAATGCGCCAATCCATATGT 59.659 37.500 4.18 0.00 0.00 2.29
222 223 4.869215 TGTTTAATGCGCCAATCCATATG 58.131 39.130 4.18 0.00 0.00 1.78
223 224 5.010922 ACATGTTTAATGCGCCAATCCATAT 59.989 36.000 4.18 0.00 0.00 1.78
224 225 4.340666 ACATGTTTAATGCGCCAATCCATA 59.659 37.500 4.18 0.00 0.00 2.74
225 226 3.132646 ACATGTTTAATGCGCCAATCCAT 59.867 39.130 4.18 0.00 0.00 3.41
226 227 2.495270 ACATGTTTAATGCGCCAATCCA 59.505 40.909 4.18 0.00 0.00 3.41
227 228 3.163630 ACATGTTTAATGCGCCAATCC 57.836 42.857 4.18 0.00 0.00 3.01
228 229 3.242059 GCAACATGTTTAATGCGCCAATC 60.242 43.478 8.77 0.00 0.00 2.67
229 230 2.672381 GCAACATGTTTAATGCGCCAAT 59.328 40.909 8.77 0.00 0.00 3.16
230 231 2.064762 GCAACATGTTTAATGCGCCAA 58.935 42.857 8.77 0.00 0.00 4.52
231 232 1.671261 GGCAACATGTTTAATGCGCCA 60.671 47.619 23.39 0.00 39.40 5.69
232 233 0.998669 GGCAACATGTTTAATGCGCC 59.001 50.000 16.74 16.74 39.66 6.53
233 234 0.639756 CGGCAACATGTTTAATGCGC 59.360 50.000 8.77 8.06 39.66 6.09
234 235 1.910819 GTCGGCAACATGTTTAATGCG 59.089 47.619 8.77 6.99 39.66 4.73
235 236 2.258755 GGTCGGCAACATGTTTAATGC 58.741 47.619 8.77 10.12 38.06 3.56
236 237 2.230025 TGGGTCGGCAACATGTTTAATG 59.770 45.455 8.77 0.00 0.00 1.90
237 238 2.520069 TGGGTCGGCAACATGTTTAAT 58.480 42.857 8.77 0.00 0.00 1.40
238 239 1.982660 TGGGTCGGCAACATGTTTAA 58.017 45.000 8.77 0.00 0.00 1.52
239 240 2.208132 ATGGGTCGGCAACATGTTTA 57.792 45.000 8.77 0.00 0.00 2.01
240 241 2.208132 TATGGGTCGGCAACATGTTT 57.792 45.000 8.77 0.00 0.00 2.83
241 242 2.435372 ATATGGGTCGGCAACATGTT 57.565 45.000 4.92 4.92 0.00 2.71
242 243 2.435372 AATATGGGTCGGCAACATGT 57.565 45.000 6.69 0.00 0.00 3.21
243 244 4.909696 TTTAATATGGGTCGGCAACATG 57.090 40.909 6.69 0.00 0.00 3.21
244 245 5.923733 TTTTTAATATGGGTCGGCAACAT 57.076 34.783 2.06 2.06 0.00 2.71
245 246 5.923733 ATTTTTAATATGGGTCGGCAACA 57.076 34.783 0.00 0.00 0.00 3.33
246 247 6.263617 TCCTATTTTTAATATGGGTCGGCAAC 59.736 38.462 0.00 0.00 0.00 4.17
247 248 6.263617 GTCCTATTTTTAATATGGGTCGGCAA 59.736 38.462 0.00 0.00 0.00 4.52
248 249 5.766174 GTCCTATTTTTAATATGGGTCGGCA 59.234 40.000 0.00 0.00 0.00 5.69
249 250 5.106830 CGTCCTATTTTTAATATGGGTCGGC 60.107 44.000 8.68 0.00 33.79 5.54
250 251 5.410439 CCGTCCTATTTTTAATATGGGTCGG 59.590 44.000 16.95 16.95 44.03 4.79
251 252 6.146673 GTCCGTCCTATTTTTAATATGGGTCG 59.853 42.308 9.30 9.30 35.88 4.79
252 253 6.146673 CGTCCGTCCTATTTTTAATATGGGTC 59.853 42.308 0.00 0.00 0.00 4.46
253 254 5.993441 CGTCCGTCCTATTTTTAATATGGGT 59.007 40.000 0.00 0.00 0.00 4.51
254 255 5.993441 ACGTCCGTCCTATTTTTAATATGGG 59.007 40.000 0.00 0.00 0.00 4.00
255 256 6.129009 CGACGTCCGTCCTATTTTTAATATGG 60.129 42.308 10.58 0.00 41.76 2.74
256 257 6.129009 CCGACGTCCGTCCTATTTTTAATATG 60.129 42.308 10.58 0.00 41.76 1.78
257 258 5.922544 CCGACGTCCGTCCTATTTTTAATAT 59.077 40.000 10.58 0.00 41.76 1.28
258 259 5.280945 CCGACGTCCGTCCTATTTTTAATA 58.719 41.667 10.58 0.00 41.76 0.98
259 260 4.114794 CCGACGTCCGTCCTATTTTTAAT 58.885 43.478 10.58 0.00 41.76 1.40
260 261 3.510719 CCGACGTCCGTCCTATTTTTAA 58.489 45.455 10.58 0.00 41.76 1.52
261 262 2.159254 CCCGACGTCCGTCCTATTTTTA 60.159 50.000 10.58 0.00 41.76 1.52
262 263 1.404583 CCCGACGTCCGTCCTATTTTT 60.405 52.381 10.58 0.00 41.76 1.94
263 264 0.174162 CCCGACGTCCGTCCTATTTT 59.826 55.000 10.58 0.00 41.76 1.82
264 265 1.811860 CCCGACGTCCGTCCTATTT 59.188 57.895 10.58 0.00 41.76 1.40
265 266 2.779033 GCCCGACGTCCGTCCTATT 61.779 63.158 10.58 0.00 41.76 1.73
266 267 3.214845 GCCCGACGTCCGTCCTAT 61.215 66.667 10.58 0.00 41.76 2.57
267 268 4.720902 TGCCCGACGTCCGTCCTA 62.721 66.667 10.58 0.00 41.76 2.94
287 288 3.719144 GTTCGTTTGGGTCGGCCG 61.719 66.667 22.12 22.12 34.97 6.13
288 289 1.726533 TTTGTTCGTTTGGGTCGGCC 61.727 55.000 0.00 0.00 0.00 6.13
289 290 0.100861 TTTTGTTCGTTTGGGTCGGC 59.899 50.000 0.00 0.00 0.00 5.54
290 291 2.563471 TTTTTGTTCGTTTGGGTCGG 57.437 45.000 0.00 0.00 0.00 4.79
306 307 1.600485 ACGGCGATTTCGTCTGTTTTT 59.400 42.857 16.62 0.00 42.59 1.94
307 308 1.223187 ACGGCGATTTCGTCTGTTTT 58.777 45.000 16.62 0.00 42.59 2.43
308 309 1.223187 AACGGCGATTTCGTCTGTTT 58.777 45.000 16.62 0.00 42.59 2.83
309 310 1.070175 CAAACGGCGATTTCGTCTGTT 60.070 47.619 16.62 12.57 42.59 3.16
310 311 0.511221 CAAACGGCGATTTCGTCTGT 59.489 50.000 16.62 3.50 42.59 3.41
311 312 0.511221 ACAAACGGCGATTTCGTCTG 59.489 50.000 16.62 0.00 42.59 3.51
312 313 1.223187 AACAAACGGCGATTTCGTCT 58.777 45.000 16.62 0.00 42.59 4.18
313 314 1.706597 CAAACAAACGGCGATTTCGTC 59.293 47.619 16.62 0.00 40.18 4.20
314 315 1.598430 CCAAACAAACGGCGATTTCGT 60.598 47.619 16.62 0.00 43.14 3.85
315 316 1.049251 CCAAACAAACGGCGATTTCG 58.951 50.000 16.62 0.00 43.27 3.46
316 317 1.269361 ACCCAAACAAACGGCGATTTC 60.269 47.619 16.62 0.00 0.00 2.17
317 318 0.747852 ACCCAAACAAACGGCGATTT 59.252 45.000 16.62 7.82 0.00 2.17
318 319 0.312729 GACCCAAACAAACGGCGATT 59.687 50.000 16.62 4.77 0.00 3.34
319 320 1.847890 CGACCCAAACAAACGGCGAT 61.848 55.000 16.62 0.00 0.00 4.58
320 321 2.535788 CGACCCAAACAAACGGCGA 61.536 57.895 16.62 0.00 0.00 5.54
321 322 2.051703 CGACCCAAACAAACGGCG 60.052 61.111 4.80 4.80 0.00 6.46
322 323 2.333581 CCGACCCAAACAAACGGC 59.666 61.111 0.00 0.00 37.32 5.68
323 324 2.333581 GCCGACCCAAACAAACGG 59.666 61.111 0.00 0.00 45.26 4.44
324 325 2.333581 GGCCGACCCAAACAAACG 59.666 61.111 0.00 0.00 0.00 3.60
325 326 2.007113 AACGGCCGACCCAAACAAAC 62.007 55.000 35.90 0.00 0.00 2.93
326 327 1.753463 AACGGCCGACCCAAACAAA 60.753 52.632 35.90 0.00 0.00 2.83
327 328 2.124236 AACGGCCGACCCAAACAA 60.124 55.556 35.90 0.00 0.00 2.83
328 329 2.902846 CAACGGCCGACCCAAACA 60.903 61.111 35.90 0.00 0.00 2.83
329 330 4.337060 GCAACGGCCGACCCAAAC 62.337 66.667 35.90 9.75 0.00 2.93
330 331 4.572571 AGCAACGGCCGACCCAAA 62.573 61.111 35.90 0.00 42.56 3.28
333 334 2.588856 ATAAGAGCAACGGCCGACCC 62.589 60.000 35.90 18.52 42.56 4.46
334 335 0.743345 AATAAGAGCAACGGCCGACC 60.743 55.000 35.90 18.91 42.56 4.79
335 336 0.373716 CAATAAGAGCAACGGCCGAC 59.626 55.000 35.90 20.66 42.56 4.79
336 337 0.036765 ACAATAAGAGCAACGGCCGA 60.037 50.000 35.90 6.79 42.56 5.54
337 338 0.096976 CACAATAAGAGCAACGGCCG 59.903 55.000 26.86 26.86 42.56 6.13
338 339 1.165270 ACACAATAAGAGCAACGGCC 58.835 50.000 0.00 0.00 42.56 6.13
339 340 4.083484 ACTTTACACAATAAGAGCAACGGC 60.083 41.667 0.00 0.00 41.61 5.68
340 341 5.607119 ACTTTACACAATAAGAGCAACGG 57.393 39.130 0.00 0.00 0.00 4.44
341 342 7.112528 TGTACTTTACACAATAAGAGCAACG 57.887 36.000 0.00 0.00 32.89 4.10
342 343 9.329913 CATTGTACTTTACACAATAAGAGCAAC 57.670 33.333 0.74 0.00 43.11 4.17
343 344 9.062524 ACATTGTACTTTACACAATAAGAGCAA 57.937 29.630 0.74 0.00 43.11 3.91
344 345 8.615878 ACATTGTACTTTACACAATAAGAGCA 57.384 30.769 0.74 0.00 43.11 4.26
372 373 9.334947 CCTGCTTGAATTAATCTTCTTCATCTA 57.665 33.333 0.00 0.00 0.00 1.98
373 374 7.201803 GCCTGCTTGAATTAATCTTCTTCATCT 60.202 37.037 0.00 0.00 0.00 2.90
374 375 6.916932 GCCTGCTTGAATTAATCTTCTTCATC 59.083 38.462 0.00 0.00 0.00 2.92
375 376 6.459298 CGCCTGCTTGAATTAATCTTCTTCAT 60.459 38.462 0.00 0.00 0.00 2.57
376 377 5.163723 CGCCTGCTTGAATTAATCTTCTTCA 60.164 40.000 0.00 0.00 0.00 3.02
377 378 5.065218 TCGCCTGCTTGAATTAATCTTCTTC 59.935 40.000 0.00 0.00 0.00 2.87
378 379 4.943705 TCGCCTGCTTGAATTAATCTTCTT 59.056 37.500 0.00 0.00 0.00 2.52
379 380 4.517285 TCGCCTGCTTGAATTAATCTTCT 58.483 39.130 0.00 0.00 0.00 2.85
380 381 4.787882 GCTCGCCTGCTTGAATTAATCTTC 60.788 45.833 0.00 0.00 0.00 2.87
381 382 3.065925 GCTCGCCTGCTTGAATTAATCTT 59.934 43.478 0.00 0.00 0.00 2.40
382 383 2.615912 GCTCGCCTGCTTGAATTAATCT 59.384 45.455 0.00 0.00 0.00 2.40
383 384 2.355756 TGCTCGCCTGCTTGAATTAATC 59.644 45.455 0.00 0.00 0.00 1.75
384 385 2.098117 GTGCTCGCCTGCTTGAATTAAT 59.902 45.455 0.00 0.00 0.00 1.40
385 386 1.468520 GTGCTCGCCTGCTTGAATTAA 59.531 47.619 0.00 0.00 0.00 1.40
386 387 1.086696 GTGCTCGCCTGCTTGAATTA 58.913 50.000 0.00 0.00 0.00 1.40
387 388 0.890542 TGTGCTCGCCTGCTTGAATT 60.891 50.000 0.00 0.00 0.00 2.17
388 389 0.890542 TTGTGCTCGCCTGCTTGAAT 60.891 50.000 0.00 0.00 0.00 2.57
389 390 1.525765 TTGTGCTCGCCTGCTTGAA 60.526 52.632 0.00 0.00 0.00 2.69
390 391 2.110835 TTGTGCTCGCCTGCTTGA 59.889 55.556 0.00 0.00 0.00 3.02
391 392 2.253452 GTTGTGCTCGCCTGCTTG 59.747 61.111 0.00 0.00 0.00 4.01
392 393 2.203195 TGTTGTGCTCGCCTGCTT 60.203 55.556 0.00 0.00 0.00 3.91
393 394 2.974698 GTGTTGTGCTCGCCTGCT 60.975 61.111 0.00 0.00 0.00 4.24
394 395 2.722130 CTTGTGTTGTGCTCGCCTGC 62.722 60.000 0.00 0.00 0.00 4.85
395 396 1.280746 CTTGTGTTGTGCTCGCCTG 59.719 57.895 0.00 0.00 0.00 4.85
396 397 2.546494 GCTTGTGTTGTGCTCGCCT 61.546 57.895 0.00 0.00 0.00 5.52
397 398 2.050985 GCTTGTGTTGTGCTCGCC 60.051 61.111 0.00 0.00 0.00 5.54
398 399 1.655350 GTGCTTGTGTTGTGCTCGC 60.655 57.895 0.00 0.00 0.00 5.03
399 400 1.368019 CGTGCTTGTGTTGTGCTCG 60.368 57.895 0.00 0.00 37.36 5.03
400 401 0.589729 CACGTGCTTGTGTTGTGCTC 60.590 55.000 0.82 0.00 35.12 4.26
401 402 1.429021 CACGTGCTTGTGTTGTGCT 59.571 52.632 0.82 0.00 35.12 4.40
402 403 3.981303 CACGTGCTTGTGTTGTGC 58.019 55.556 0.82 0.00 35.12 4.57
434 435 4.662961 TGTGGCTCTGACGGTGCG 62.663 66.667 2.41 0.00 35.51 5.34
435 436 2.280797 TTGTGGCTCTGACGGTGC 60.281 61.111 0.00 0.00 0.00 5.01
436 437 0.036952 ATCTTGTGGCTCTGACGGTG 60.037 55.000 0.00 0.00 0.00 4.94
439 440 0.671472 TGCATCTTGTGGCTCTGACG 60.671 55.000 0.00 0.00 0.00 4.35
486 488 4.805719 GTGTTCATCGAGCATCTAATGACA 59.194 41.667 0.00 0.00 35.55 3.58
488 490 4.044426 CGTGTTCATCGAGCATCTAATGA 58.956 43.478 0.00 0.00 34.49 2.57
490 492 3.181475 ACCGTGTTCATCGAGCATCTAAT 60.181 43.478 0.00 0.00 0.00 1.73
492 494 1.749063 ACCGTGTTCATCGAGCATCTA 59.251 47.619 0.00 0.00 0.00 1.98
494 496 0.924090 GACCGTGTTCATCGAGCATC 59.076 55.000 0.00 0.00 0.00 3.91
495 497 0.532573 AGACCGTGTTCATCGAGCAT 59.467 50.000 0.00 0.00 0.00 3.79
496 498 0.388520 CAGACCGTGTTCATCGAGCA 60.389 55.000 0.00 0.00 0.00 4.26
497 499 0.109272 TCAGACCGTGTTCATCGAGC 60.109 55.000 0.00 0.00 0.00 5.03
504 506 1.079503 GGCTGAATCAGACCGTGTTC 58.920 55.000 15.38 0.00 32.43 3.18
505 507 0.396435 TGGCTGAATCAGACCGTGTT 59.604 50.000 14.36 0.00 39.07 3.32
507 509 1.667724 GAATGGCTGAATCAGACCGTG 59.332 52.381 14.36 0.00 39.07 4.94
514 516 3.765511 CCTTTTGAGGAATGGCTGAATCA 59.234 43.478 0.00 0.00 0.00 2.57
524 526 3.703052 GACCATCATGCCTTTTGAGGAAT 59.297 43.478 0.00 0.00 0.00 3.01
544 546 3.798202 ACCTTGATAAAGCATCTCCGAC 58.202 45.455 0.00 0.00 34.46 4.79
546 548 6.867662 ATAAACCTTGATAAAGCATCTCCG 57.132 37.500 0.00 0.00 34.46 4.63
559 561 4.647611 CCGGGTATGCATATAAACCTTGA 58.352 43.478 10.16 0.00 32.38 3.02
587 589 2.428530 CTGTAGGCTGTAGCATGTGAGA 59.571 50.000 6.18 0.00 44.36 3.27
602 604 3.146847 GGGTCTTGGTTTGTTCTGTAGG 58.853 50.000 0.00 0.00 0.00 3.18
603 605 3.146847 GGGGTCTTGGTTTGTTCTGTAG 58.853 50.000 0.00 0.00 0.00 2.74
604 606 2.158579 GGGGGTCTTGGTTTGTTCTGTA 60.159 50.000 0.00 0.00 0.00 2.74
606 608 1.328279 GGGGGTCTTGGTTTGTTCTG 58.672 55.000 0.00 0.00 0.00 3.02
608 610 1.176619 CCGGGGGTCTTGGTTTGTTC 61.177 60.000 0.00 0.00 0.00 3.18
609 611 1.152631 CCGGGGGTCTTGGTTTGTT 60.153 57.895 0.00 0.00 0.00 2.83
611 613 1.303317 CTCCGGGGGTCTTGGTTTG 60.303 63.158 0.00 0.00 0.00 2.93
613 615 2.933834 CCTCCGGGGGTCTTGGTT 60.934 66.667 14.16 0.00 0.00 3.67
663 666 3.797039 CACTCGCTCCCAAATCTTATCA 58.203 45.455 0.00 0.00 0.00 2.15
834 866 2.277084 CACGTTAGCCTGTCCCATTAC 58.723 52.381 0.00 0.00 0.00 1.89
844 876 2.602568 ACCGGGACACGTTAGCCT 60.603 61.111 6.32 0.00 42.24 4.58
859 891 4.314440 TGTGACTGCCGGCTGACC 62.314 66.667 36.36 25.98 0.00 4.02
861 893 4.314440 GGTGTGACTGCCGGCTGA 62.314 66.667 36.36 15.23 0.00 4.26
865 897 3.000819 TAGGGGTGTGACTGCCGG 61.001 66.667 0.00 0.00 0.00 6.13
866 898 2.107041 TTGTAGGGGTGTGACTGCCG 62.107 60.000 0.00 0.00 0.00 5.69
867 899 0.109723 TTTGTAGGGGTGTGACTGCC 59.890 55.000 0.00 0.00 0.00 4.85
868 900 1.812571 CATTTGTAGGGGTGTGACTGC 59.187 52.381 0.00 0.00 0.00 4.40
869 901 1.812571 GCATTTGTAGGGGTGTGACTG 59.187 52.381 0.00 0.00 0.00 3.51
870 902 1.423541 TGCATTTGTAGGGGTGTGACT 59.576 47.619 0.00 0.00 0.00 3.41
871 903 1.812571 CTGCATTTGTAGGGGTGTGAC 59.187 52.381 0.00 0.00 0.00 3.67
872 904 1.423541 ACTGCATTTGTAGGGGTGTGA 59.576 47.619 0.79 0.00 31.73 3.58
876 933 1.256812 GCAACTGCATTTGTAGGGGT 58.743 50.000 17.00 0.00 41.59 4.95
890 947 4.235762 ACAGGCGACCGTGCAACT 62.236 61.111 0.00 0.00 36.28 3.16
927 991 1.518133 CTGCTAGTGCTGCGACCTC 60.518 63.158 0.00 0.00 40.48 3.85
929 993 1.807573 GACTGCTAGTGCTGCGACC 60.808 63.158 0.00 0.00 41.07 4.79
932 996 1.808799 CTGGACTGCTAGTGCTGCG 60.809 63.158 8.69 0.00 41.07 5.18
934 998 1.018226 GTGCTGGACTGCTAGTGCTG 61.018 60.000 8.69 8.93 37.46 4.41
982 1046 2.351336 ATAGTACAGCAGTCCGGCGC 62.351 60.000 0.00 0.00 39.27 6.53
983 1047 0.595053 CATAGTACAGCAGTCCGGCG 60.595 60.000 0.00 0.00 39.27 6.46
986 1050 0.747255 AGCCATAGTACAGCAGTCCG 59.253 55.000 0.00 0.00 0.00 4.79
1562 1650 2.819595 CCACGAGCCCCATGAACG 60.820 66.667 0.00 0.00 0.00 3.95
1728 1852 1.593787 CATGGTCACGTCCAGCTCT 59.406 57.895 2.16 0.00 41.05 4.09
1758 1933 0.607217 CAAGCCAGTCCATGCACTCA 60.607 55.000 0.00 0.00 0.00 3.41
2200 2381 2.066393 CCCGGCTCTTCTCCCATGA 61.066 63.158 0.00 0.00 0.00 3.07
2379 2560 1.197721 GTCCTTCACTTTGTGATGCGG 59.802 52.381 1.05 3.72 42.40 5.69
2471 2654 4.000331 AGAGACACCTCAAATCACACAG 58.000 45.455 0.00 0.00 41.87 3.66
2523 2706 0.448379 CGAACGGAGCGAACGAAAAC 60.448 55.000 4.82 0.00 33.46 2.43
2588 2779 3.552890 GGCACAATTTGTCCTTTCAGACC 60.553 47.826 0.00 0.00 35.83 3.85
2689 2882 4.041567 TGGTGGACAAGTTAGATGTGACAT 59.958 41.667 0.00 0.00 0.00 3.06
2690 2883 3.389656 TGGTGGACAAGTTAGATGTGACA 59.610 43.478 0.00 0.00 0.00 3.58
2713 2906 4.021104 CGAATCTCACAGCCCCTTATCATA 60.021 45.833 0.00 0.00 0.00 2.15
2751 2945 5.096169 CGAGACATATCGAGAACACAAACT 58.904 41.667 0.00 0.00 45.56 2.66
2761 2955 1.055405 GCGACGCGAGACATATCGAG 61.055 60.000 15.93 0.00 45.56 4.04
2767 2961 1.194997 GATACTAGCGACGCGAGACAT 59.805 52.381 32.23 23.58 34.97 3.06
2785 2979 1.283321 GGAAAAGCAGACCAGAGGGAT 59.717 52.381 0.00 0.00 38.05 3.85
2793 2987 1.666189 GCGTGATAGGAAAAGCAGACC 59.334 52.381 0.00 0.00 0.00 3.85
2795 2989 1.640428 CGCGTGATAGGAAAAGCAGA 58.360 50.000 0.00 0.00 0.00 4.26
2799 2993 1.061131 CACTGCGCGTGATAGGAAAAG 59.939 52.381 22.18 4.20 46.81 2.27
2978 3179 9.788960 GGGATTGACTCAATTTCTAATAAACAC 57.211 33.333 5.73 0.00 33.90 3.32
3004 3205 3.213249 GCAGAAGGCACAAGAGATTTG 57.787 47.619 0.00 0.00 43.97 2.32
3037 3238 7.015682 GGGGAATGTGAGAGTGAGAAGATATAA 59.984 40.741 0.00 0.00 0.00 0.98
3039 3240 5.306678 GGGGAATGTGAGAGTGAGAAGATAT 59.693 44.000 0.00 0.00 0.00 1.63
3162 3382 1.804372 GCCCGCATGAAAAACACACAA 60.804 47.619 0.00 0.00 0.00 3.33
3205 3439 9.796120 TCGTGACTTTGAAAATAAATTTCTTGT 57.204 25.926 0.00 0.00 46.27 3.16
3266 3504 6.374333 ACACGCACAGATAATTCCTACAAAAT 59.626 34.615 0.00 0.00 0.00 1.82
3274 3512 4.267928 GTGTAGACACGCACAGATAATTCC 59.732 45.833 0.00 0.00 37.10 3.01
3346 3589 2.101783 TGGATAAGCCCATGCACAAAG 58.898 47.619 0.00 0.00 41.13 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.