Multiple sequence alignment - TraesCS2A01G410000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G410000 chr2A 100.000 3404 0 0 1 3404 667941211 667944614 0.000000e+00 6287.0
1 TraesCS2A01G410000 chr2A 79.729 1401 255 25 1016 2406 715806813 715808194 0.000000e+00 987.0
2 TraesCS2A01G410000 chr2A 78.270 1399 279 21 1016 2406 667959475 667960856 0.000000e+00 876.0
3 TraesCS2A01G410000 chr2A 75.194 1415 290 50 1028 2404 75656519 75655128 2.250000e-171 612.0
4 TraesCS2A01G410000 chr2D 92.090 2655 129 46 446 3037 522629137 522631773 0.000000e+00 3664.0
5 TraesCS2A01G410000 chr2D 79.030 1402 263 25 1016 2406 577609369 577607988 0.000000e+00 931.0
6 TraesCS2A01G410000 chr2D 78.898 1398 272 18 1016 2406 522689387 522690768 0.000000e+00 926.0
7 TraesCS2A01G410000 chr2D 78.477 1366 261 27 1012 2362 522897783 522899130 0.000000e+00 863.0
8 TraesCS2A01G410000 chr2D 77.484 1399 290 18 1016 2406 522749264 522750645 0.000000e+00 815.0
9 TraesCS2A01G410000 chr2D 74.822 1402 300 45 1028 2404 75760789 75759416 4.890000e-163 584.0
10 TraesCS2A01G410000 chr2D 74.840 1407 289 54 1038 2404 75674915 75676296 8.190000e-161 577.0
11 TraesCS2A01G410000 chr2D 86.638 232 16 3 162 393 522628903 522629119 3.390000e-60 243.0
12 TraesCS2A01G410000 chr2B 94.333 1888 74 18 979 2835 615577789 615579674 0.000000e+00 2863.0
13 TraesCS2A01G410000 chr2B 79.045 1403 261 27 1016 2406 694944101 694945482 0.000000e+00 931.0
14 TraesCS2A01G410000 chr2B 78.056 1399 282 20 1016 2406 615736043 615737424 0.000000e+00 859.0
15 TraesCS2A01G410000 chr2B 83.099 426 26 14 446 869 615577276 615577657 2.510000e-91 346.0
16 TraesCS2A01G410000 chr2B 73.617 940 193 41 1028 1935 116848094 116847178 9.170000e-81 311.0
17 TraesCS2A01G410000 chr2B 85.433 254 23 8 162 408 615577026 615577272 5.640000e-63 252.0
18 TraesCS2A01G410000 chr7D 90.435 115 10 1 3038 3151 35578670 35578556 2.120000e-32 150.0
19 TraesCS2A01G410000 chr7D 97.143 35 1 0 130 164 518085394 518085428 3.670000e-05 60.2
20 TraesCS2A01G410000 chr5B 83.832 167 16 8 9 164 384273727 384273561 7.610000e-32 148.0
21 TraesCS2A01G410000 chr3B 90.090 111 11 0 3038 3148 672609723 672609833 9.840000e-31 145.0
22 TraesCS2A01G410000 chr7A 88.793 116 11 1 3038 3151 734997722 734997607 1.270000e-29 141.0
23 TraesCS2A01G410000 chr7A 86.207 116 14 2 9 122 243353276 243353161 1.280000e-24 124.0
24 TraesCS2A01G410000 chr4A 81.102 127 17 3 9 129 143958998 143958873 1.010000e-15 95.3
25 TraesCS2A01G410000 chr7B 77.483 151 23 6 23 166 12828525 12828379 2.820000e-11 80.5
26 TraesCS2A01G410000 chr1B 97.297 37 1 0 130 166 623280378 623280414 2.840000e-06 63.9
27 TraesCS2A01G410000 chr1B 94.444 36 2 0 130 165 657399472 657399507 4.750000e-04 56.5
28 TraesCS2A01G410000 chr4D 97.143 35 1 0 130 164 258911034 258911000 3.670000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G410000 chr2A 667941211 667944614 3403 False 6287.000000 6287 100.000000 1 3404 1 chr2A.!!$F1 3403
1 TraesCS2A01G410000 chr2A 715806813 715808194 1381 False 987.000000 987 79.729000 1016 2406 1 chr2A.!!$F3 1390
2 TraesCS2A01G410000 chr2A 667959475 667960856 1381 False 876.000000 876 78.270000 1016 2406 1 chr2A.!!$F2 1390
3 TraesCS2A01G410000 chr2A 75655128 75656519 1391 True 612.000000 612 75.194000 1028 2404 1 chr2A.!!$R1 1376
4 TraesCS2A01G410000 chr2D 522628903 522631773 2870 False 1953.500000 3664 89.364000 162 3037 2 chr2D.!!$F5 2875
5 TraesCS2A01G410000 chr2D 577607988 577609369 1381 True 931.000000 931 79.030000 1016 2406 1 chr2D.!!$R2 1390
6 TraesCS2A01G410000 chr2D 522689387 522690768 1381 False 926.000000 926 78.898000 1016 2406 1 chr2D.!!$F2 1390
7 TraesCS2A01G410000 chr2D 522897783 522899130 1347 False 863.000000 863 78.477000 1012 2362 1 chr2D.!!$F4 1350
8 TraesCS2A01G410000 chr2D 522749264 522750645 1381 False 815.000000 815 77.484000 1016 2406 1 chr2D.!!$F3 1390
9 TraesCS2A01G410000 chr2D 75759416 75760789 1373 True 584.000000 584 74.822000 1028 2404 1 chr2D.!!$R1 1376
10 TraesCS2A01G410000 chr2D 75674915 75676296 1381 False 577.000000 577 74.840000 1038 2404 1 chr2D.!!$F1 1366
11 TraesCS2A01G410000 chr2B 615577026 615579674 2648 False 1153.666667 2863 87.621667 162 2835 3 chr2B.!!$F3 2673
12 TraesCS2A01G410000 chr2B 694944101 694945482 1381 False 931.000000 931 79.045000 1016 2406 1 chr2B.!!$F2 1390
13 TraesCS2A01G410000 chr2B 615736043 615737424 1381 False 859.000000 859 78.056000 1016 2406 1 chr2B.!!$F1 1390
14 TraesCS2A01G410000 chr2B 116847178 116848094 916 True 311.000000 311 73.617000 1028 1935 1 chr2B.!!$R1 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 428 0.037232 GAGAAGCGGGCACTAGTGTT 60.037 55.0 23.44 9.88 0.00 3.32 F
534 541 0.240145 TCGGCTACAATAGATCGGCG 59.760 55.0 0.00 0.00 43.71 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 2386 1.005037 TTTGTCCGTGAGCATCGCT 60.005 52.632 0.0 0.0 45.19 4.93 R
2442 2560 0.108615 CTCGATGAGACCAAACCGCT 60.109 55.000 0.0 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.765176 CTCATCACTTTTGCACTTTCATGA 58.235 37.500 0.00 0.00 0.00 3.07
24 25 6.146601 TCATCACTTTTGCACTTTCATGAA 57.853 33.333 3.38 3.38 0.00 2.57
25 26 6.210796 TCATCACTTTTGCACTTTCATGAAG 58.789 36.000 8.41 5.87 41.32 3.02
26 27 4.935702 TCACTTTTGCACTTTCATGAAGG 58.064 39.130 15.47 15.47 39.79 3.46
27 28 4.402155 TCACTTTTGCACTTTCATGAAGGT 59.598 37.500 16.83 16.83 39.79 3.50
28 29 4.741676 CACTTTTGCACTTTCATGAAGGTC 59.258 41.667 19.40 14.39 39.79 3.85
29 30 3.624326 TTTGCACTTTCATGAAGGTCG 57.376 42.857 19.40 15.36 39.79 4.79
30 31 1.522668 TGCACTTTCATGAAGGTCGG 58.477 50.000 19.40 11.21 39.79 4.79
31 32 0.804989 GCACTTTCATGAAGGTCGGG 59.195 55.000 19.40 10.55 39.79 5.14
32 33 0.804989 CACTTTCATGAAGGTCGGGC 59.195 55.000 19.40 0.00 39.79 6.13
33 34 0.322546 ACTTTCATGAAGGTCGGGCC 60.323 55.000 16.83 0.00 39.79 5.80
34 35 1.369091 CTTTCATGAAGGTCGGGCCG 61.369 60.000 22.51 22.51 43.70 6.13
35 36 2.813226 TTTCATGAAGGTCGGGCCGG 62.813 60.000 27.98 7.20 43.70 6.13
36 37 4.856801 CATGAAGGTCGGGCCGGG 62.857 72.222 27.98 0.00 43.70 5.73
65 66 4.629779 CCCGACGGGCTTTTATGT 57.370 55.556 22.37 0.00 35.35 2.29
66 67 3.764658 CCCGACGGGCTTTTATGTA 57.235 52.632 22.37 0.00 35.35 2.29
67 68 2.249844 CCCGACGGGCTTTTATGTAT 57.750 50.000 22.37 0.00 35.35 2.29
68 69 2.567985 CCCGACGGGCTTTTATGTATT 58.432 47.619 22.37 0.00 35.35 1.89
69 70 2.546789 CCCGACGGGCTTTTATGTATTC 59.453 50.000 22.37 0.00 35.35 1.75
70 71 2.220133 CCGACGGGCTTTTATGTATTCG 59.780 50.000 5.81 0.00 0.00 3.34
71 72 2.220133 CGACGGGCTTTTATGTATTCGG 59.780 50.000 0.00 0.00 0.00 4.30
72 73 2.546789 GACGGGCTTTTATGTATTCGGG 59.453 50.000 0.00 0.00 0.00 5.14
73 74 2.092807 ACGGGCTTTTATGTATTCGGGT 60.093 45.455 0.00 0.00 0.00 5.28
74 75 2.546789 CGGGCTTTTATGTATTCGGGTC 59.453 50.000 0.00 0.00 0.00 4.46
75 76 2.546789 GGGCTTTTATGTATTCGGGTCG 59.453 50.000 0.00 0.00 0.00 4.79
76 77 3.460103 GGCTTTTATGTATTCGGGTCGA 58.540 45.455 0.00 0.00 0.00 4.20
77 78 3.493503 GGCTTTTATGTATTCGGGTCGAG 59.506 47.826 0.00 0.00 37.14 4.04
78 79 3.059800 GCTTTTATGTATTCGGGTCGAGC 60.060 47.826 5.93 5.93 37.14 5.03
79 80 4.369182 CTTTTATGTATTCGGGTCGAGCT 58.631 43.478 15.18 0.00 37.14 4.09
80 81 3.637998 TTATGTATTCGGGTCGAGCTC 57.362 47.619 15.18 2.73 37.14 4.09
81 82 0.311165 ATGTATTCGGGTCGAGCTCG 59.689 55.000 30.03 30.03 43.78 5.03
82 83 1.008767 GTATTCGGGTCGAGCTCGG 60.009 63.158 33.98 18.99 42.39 4.63
83 84 2.191513 TATTCGGGTCGAGCTCGGG 61.192 63.158 33.98 20.66 42.39 5.14
95 96 1.581447 GCTCGGGCTCAAAAACAGG 59.419 57.895 0.00 0.00 35.22 4.00
96 97 1.581447 CTCGGGCTCAAAAACAGGC 59.419 57.895 0.00 0.00 35.69 4.85
100 101 2.732289 GGCTCAAAAACAGGCCTGA 58.268 52.632 39.19 15.01 41.20 3.86
101 102 1.260544 GGCTCAAAAACAGGCCTGAT 58.739 50.000 39.19 25.96 41.20 2.90
102 103 1.067354 GGCTCAAAAACAGGCCTGATG 60.067 52.381 39.19 27.37 41.20 3.07
103 104 1.067354 GCTCAAAAACAGGCCTGATGG 60.067 52.381 39.19 20.83 0.00 3.51
104 105 2.517959 CTCAAAAACAGGCCTGATGGA 58.482 47.619 39.19 23.57 34.57 3.41
105 106 2.229784 CTCAAAAACAGGCCTGATGGAC 59.770 50.000 39.19 0.00 43.41 4.02
128 129 3.647771 GGGCCCGGACCTGAGTTT 61.648 66.667 5.69 0.00 0.00 2.66
129 130 2.359975 GGCCCGGACCTGAGTTTG 60.360 66.667 0.73 0.00 0.00 2.93
130 131 3.056328 GCCCGGACCTGAGTTTGC 61.056 66.667 0.73 0.00 0.00 3.68
131 132 2.359975 CCCGGACCTGAGTTTGCC 60.360 66.667 0.73 0.00 0.00 4.52
132 133 2.359975 CCGGACCTGAGTTTGCCC 60.360 66.667 0.00 0.00 0.00 5.36
133 134 2.742372 CGGACCTGAGTTTGCCCG 60.742 66.667 0.00 0.00 0.00 6.13
134 135 2.359975 GGACCTGAGTTTGCCCGG 60.360 66.667 0.00 0.00 0.00 5.73
135 136 2.747686 GACCTGAGTTTGCCCGGA 59.252 61.111 0.73 0.00 0.00 5.14
136 137 1.671379 GACCTGAGTTTGCCCGGAC 60.671 63.158 0.73 0.00 0.00 4.79
137 138 2.359975 CCTGAGTTTGCCCGGACC 60.360 66.667 0.73 0.00 0.00 4.46
138 139 2.742372 CTGAGTTTGCCCGGACCG 60.742 66.667 6.99 6.99 0.00 4.79
150 151 3.925090 GGACCGGCCCGAGGTATG 61.925 72.222 3.71 0.00 43.01 2.39
151 152 3.925090 GACCGGCCCGAGGTATGG 61.925 72.222 3.71 0.00 43.01 2.74
156 157 4.256180 GCCCGAGGTATGGCCAGG 62.256 72.222 13.05 6.01 41.97 4.45
157 158 2.768344 CCCGAGGTATGGCCAGGT 60.768 66.667 13.05 0.00 40.61 4.00
158 159 1.458777 CCCGAGGTATGGCCAGGTA 60.459 63.158 13.05 0.00 40.61 3.08
159 160 0.836400 CCCGAGGTATGGCCAGGTAT 60.836 60.000 13.05 0.00 40.61 2.73
160 161 1.551560 CCCGAGGTATGGCCAGGTATA 60.552 57.143 13.05 0.00 40.61 1.47
200 201 4.963373 TCAATCACGAGACCAGGTAAAAA 58.037 39.130 0.00 0.00 0.00 1.94
201 202 5.556915 TCAATCACGAGACCAGGTAAAAAT 58.443 37.500 0.00 0.00 0.00 1.82
202 203 5.411361 TCAATCACGAGACCAGGTAAAAATG 59.589 40.000 0.00 0.00 0.00 2.32
203 204 3.670625 TCACGAGACCAGGTAAAAATGG 58.329 45.455 0.00 0.00 42.60 3.16
242 243 0.247145 CGCGCGTAGAATGTTTCACC 60.247 55.000 24.19 0.00 0.00 4.02
311 314 2.028484 AACGACGTGTCCGCACAT 59.972 55.556 0.00 0.00 45.50 3.21
312 315 2.307309 AACGACGTGTCCGCACATG 61.307 57.895 0.00 0.00 45.50 3.21
326 329 2.157668 CGCACATGTACAAAGTCAGACC 59.842 50.000 0.00 0.00 0.00 3.85
360 363 2.961062 AGAAGCAGGCATCAGTGTTTTT 59.039 40.909 0.00 0.00 0.00 1.94
411 418 2.846371 CAGTTCTTGGAGAAGCGGG 58.154 57.895 0.00 0.00 34.42 6.13
412 419 1.003233 AGTTCTTGGAGAAGCGGGC 60.003 57.895 0.00 0.00 34.42 6.13
413 420 1.302511 GTTCTTGGAGAAGCGGGCA 60.303 57.895 0.00 0.00 34.42 5.36
414 421 1.302511 TTCTTGGAGAAGCGGGCAC 60.303 57.895 0.00 0.00 29.50 5.01
415 422 1.768684 TTCTTGGAGAAGCGGGCACT 61.769 55.000 0.00 0.00 29.50 4.40
416 423 0.902984 TCTTGGAGAAGCGGGCACTA 60.903 55.000 0.00 0.00 0.00 2.74
417 424 0.460987 CTTGGAGAAGCGGGCACTAG 60.461 60.000 0.00 0.00 0.00 2.57
418 425 1.192146 TTGGAGAAGCGGGCACTAGT 61.192 55.000 0.00 0.00 0.00 2.57
419 426 1.153549 GGAGAAGCGGGCACTAGTG 60.154 63.158 18.93 18.93 0.00 2.74
420 427 1.592223 GAGAAGCGGGCACTAGTGT 59.408 57.895 23.44 2.78 0.00 3.55
421 428 0.037232 GAGAAGCGGGCACTAGTGTT 60.037 55.000 23.44 9.88 0.00 3.32
422 429 0.396811 AGAAGCGGGCACTAGTGTTT 59.603 50.000 23.44 10.68 0.00 2.83
423 430 1.202770 AGAAGCGGGCACTAGTGTTTT 60.203 47.619 23.44 10.99 0.00 2.43
424 431 1.607148 GAAGCGGGCACTAGTGTTTTT 59.393 47.619 23.44 11.31 0.00 1.94
458 465 3.934391 AACAGCGCACGAGGTAGCC 62.934 63.158 11.47 0.00 0.00 3.93
534 541 0.240145 TCGGCTACAATAGATCGGCG 59.760 55.000 0.00 0.00 43.71 6.46
605 612 0.622665 ACATCCCAAGGAGCCTTCTG 59.377 55.000 0.00 0.00 34.05 3.02
610 617 0.627986 CCAAGGAGCCTTCTGGGAAT 59.372 55.000 0.00 0.00 37.23 3.01
611 618 1.684248 CCAAGGAGCCTTCTGGGAATG 60.684 57.143 0.00 0.00 37.23 2.67
693 700 2.051345 GCTTGGTTGTTGGCGTCG 60.051 61.111 0.00 0.00 0.00 5.12
701 708 1.735571 GTTGTTGGCGTCGTTCCATAT 59.264 47.619 0.00 0.00 32.92 1.78
702 709 2.931325 GTTGTTGGCGTCGTTCCATATA 59.069 45.455 0.00 0.00 32.92 0.86
703 710 2.542597 TGTTGGCGTCGTTCCATATAC 58.457 47.619 0.00 0.00 32.92 1.47
704 711 2.094130 TGTTGGCGTCGTTCCATATACA 60.094 45.455 0.00 0.00 32.92 2.29
705 712 3.128349 GTTGGCGTCGTTCCATATACAT 58.872 45.455 0.00 0.00 32.92 2.29
706 713 4.202131 TGTTGGCGTCGTTCCATATACATA 60.202 41.667 0.00 0.00 32.92 2.29
707 714 4.794278 TGGCGTCGTTCCATATACATAT 57.206 40.909 0.00 0.00 0.00 1.78
708 715 4.740268 TGGCGTCGTTCCATATACATATC 58.260 43.478 0.00 0.00 0.00 1.63
709 716 4.110482 GGCGTCGTTCCATATACATATCC 58.890 47.826 0.00 0.00 0.00 2.59
710 717 4.142227 GGCGTCGTTCCATATACATATCCT 60.142 45.833 0.00 0.00 0.00 3.24
711 718 4.798907 GCGTCGTTCCATATACATATCCTG 59.201 45.833 0.00 0.00 0.00 3.86
712 719 5.392703 GCGTCGTTCCATATACATATCCTGA 60.393 44.000 0.00 0.00 0.00 3.86
713 720 6.680625 GCGTCGTTCCATATACATATCCTGAT 60.681 42.308 0.00 0.00 0.00 2.90
714 721 6.693113 CGTCGTTCCATATACATATCCTGATG 59.307 42.308 0.00 0.00 0.00 3.07
715 722 6.477033 GTCGTTCCATATACATATCCTGATGC 59.523 42.308 0.00 0.00 0.00 3.91
716 723 5.460091 CGTTCCATATACATATCCTGATGCG 59.540 44.000 0.00 0.00 0.00 4.73
717 724 6.573434 GTTCCATATACATATCCTGATGCGA 58.427 40.000 0.00 0.00 0.00 5.10
718 725 6.790232 TCCATATACATATCCTGATGCGAA 57.210 37.500 0.00 0.00 0.00 4.70
719 726 7.181569 TCCATATACATATCCTGATGCGAAA 57.818 36.000 0.00 0.00 0.00 3.46
720 727 7.041721 TCCATATACATATCCTGATGCGAAAC 58.958 38.462 0.00 0.00 0.00 2.78
721 728 6.818142 CCATATACATATCCTGATGCGAAACA 59.182 38.462 0.00 0.00 0.00 2.83
722 729 7.496920 CCATATACATATCCTGATGCGAAACAT 59.503 37.037 0.00 0.00 43.54 2.71
723 730 6.732531 ATACATATCCTGATGCGAAACATG 57.267 37.500 0.00 0.00 39.84 3.21
810 834 1.447838 CGACGTCACCAATGGAGGG 60.448 63.158 17.16 0.00 0.00 4.30
862 886 6.427853 CCTTGATTAATCGGATAATCACAGCA 59.572 38.462 17.70 7.63 46.55 4.41
863 887 7.041167 CCTTGATTAATCGGATAATCACAGCAA 60.041 37.037 17.70 7.37 46.55 3.91
869 893 4.323417 TCGGATAATCACAGCAACTTTGT 58.677 39.130 0.00 0.00 0.00 2.83
921 982 9.654663 TCCATCCATCTCGTCTATATATATACG 57.345 37.037 19.33 19.33 35.14 3.06
941 1002 1.766143 GCGCCGGACAATCTAGCTTG 61.766 60.000 5.05 4.78 0.00 4.01
942 1003 1.766143 CGCCGGACAATCTAGCTTGC 61.766 60.000 5.05 0.11 0.00 4.01
948 1013 1.061711 GACAATCTAGCTTGCACGCTG 59.938 52.381 26.47 16.18 41.12 5.18
970 1038 5.168569 TGCAAGCAGTTATACTACACTGTC 58.831 41.667 4.62 0.00 42.19 3.51
973 1043 4.982999 AGCAGTTATACTACACTGTCGTG 58.017 43.478 4.62 0.00 46.63 4.35
978 1048 5.645067 AGTTATACTACACTGTCGTGCACTA 59.355 40.000 16.19 0.00 45.10 2.74
981 1051 2.031069 ACTACACTGTCGTGCACTACTG 60.031 50.000 21.69 21.69 45.10 2.74
999 1073 1.009903 TGTACACACGCGGGAATTCG 61.010 55.000 19.19 0.00 0.00 3.34
1698 1792 0.673644 CGGCGTTCAAGGACCAGAAT 60.674 55.000 0.00 0.00 0.00 2.40
1827 1933 0.607217 TGCTCTACGTGTCCTTCGGA 60.607 55.000 0.00 0.00 0.00 4.55
2268 2386 0.335019 TCCAGGAGGTGATCGAGGAA 59.665 55.000 0.00 0.00 35.89 3.36
2414 2532 2.159099 TCACAAGGTGATCAGCGTATCC 60.159 50.000 18.64 4.48 37.67 2.59
2427 2545 1.545614 CGTATCCGTGCGTGCCATAC 61.546 60.000 0.00 0.00 0.00 2.39
2442 2560 3.130633 GCCATACACAGATACGCATTGA 58.869 45.455 0.00 0.00 0.00 2.57
2455 2573 0.169009 GCATTGAGCGGTTTGGTCTC 59.831 55.000 0.00 0.00 45.46 3.36
2460 2581 0.108804 GAGCGGTTTGGTCTCATCGA 60.109 55.000 0.00 0.00 41.93 3.59
2461 2582 0.108615 AGCGGTTTGGTCTCATCGAG 60.109 55.000 0.00 0.00 0.00 4.04
2528 2669 8.869897 TGTCGTTTTCAATGTATTCATCTACTC 58.130 33.333 0.00 0.00 32.56 2.59
2529 2670 8.869897 GTCGTTTTCAATGTATTCATCTACTCA 58.130 33.333 0.00 0.00 32.56 3.41
2587 2733 6.763355 TGGAGGAGATGATAATCTACAAAGC 58.237 40.000 4.99 0.00 33.91 3.51
2682 2837 3.997021 GTGAATGGGGATCACGATGTATC 59.003 47.826 0.00 0.00 37.98 2.24
2747 2902 5.487433 TGGTCCACATGATGTAACTACAAG 58.513 41.667 0.00 0.00 39.99 3.16
2771 2926 3.721087 ACAAATCAAGATTCTCCGGGT 57.279 42.857 0.00 0.00 0.00 5.28
2848 3016 7.896811 ACATAGACTTCTGAGTTTACATGACA 58.103 34.615 0.00 0.00 35.88 3.58
2849 3017 8.535335 ACATAGACTTCTGAGTTTACATGACAT 58.465 33.333 0.00 0.00 35.88 3.06
2858 3026 9.337396 TCTGAGTTTACATGACATAAACAGTTT 57.663 29.630 15.74 3.49 42.50 2.66
2860 3028 9.944663 TGAGTTTACATGACATAAACAGTTTTC 57.055 29.630 15.74 0.00 42.50 2.29
2880 3048 1.134175 CGTTTGGCCCATAATGTCACC 59.866 52.381 0.00 0.00 0.00 4.02
2881 3049 2.175202 GTTTGGCCCATAATGTCACCA 58.825 47.619 0.00 0.00 0.00 4.17
2916 3085 2.117206 GTTCCCACACATGGCCCA 59.883 61.111 0.00 0.00 45.76 5.36
2918 3087 1.532794 TTCCCACACATGGCCCAAC 60.533 57.895 0.00 0.00 45.76 3.77
2919 3088 2.203611 CCCACACATGGCCCAACA 60.204 61.111 0.00 0.00 45.76 3.33
2920 3089 2.573083 CCCACACATGGCCCAACAC 61.573 63.158 0.00 0.00 45.76 3.32
2921 3090 1.831726 CCACACATGGCCCAACACA 60.832 57.895 0.00 0.00 39.82 3.72
2922 3091 1.186917 CCACACATGGCCCAACACAT 61.187 55.000 0.00 0.00 39.82 3.21
2923 3092 1.543607 CACACATGGCCCAACACATA 58.456 50.000 0.00 0.00 0.00 2.29
2947 3116 4.885270 CCACCCCACAACGCACCA 62.885 66.667 0.00 0.00 0.00 4.17
2950 3119 1.456705 ACCCCACAACGCACCATTT 60.457 52.632 0.00 0.00 0.00 2.32
2959 3128 4.033817 CACAACGCACCATTTCATTTTTGT 59.966 37.500 0.00 0.00 0.00 2.83
2962 3131 4.187694 ACGCACCATTTCATTTTTGTGTT 58.812 34.783 0.00 0.00 0.00 3.32
2983 3152 2.364317 CCCTCCCCTTCTCGCTCA 60.364 66.667 0.00 0.00 0.00 4.26
2989 3158 1.160137 CCCCTTCTCGCTCAGTTTTG 58.840 55.000 0.00 0.00 0.00 2.44
2999 3168 0.091344 CTCAGTTTTGCGTCGTAGCG 59.909 55.000 0.00 0.00 40.67 4.26
3010 3179 1.064505 CGTCGTAGCGGGACATTTCTA 59.935 52.381 5.84 0.00 34.04 2.10
3017 3186 2.304761 AGCGGGACATTTCTAGTTGGAA 59.695 45.455 0.00 0.00 0.00 3.53
3019 3188 3.007635 CGGGACATTTCTAGTTGGAACC 58.992 50.000 0.00 0.00 0.00 3.62
3037 3206 4.202535 GGAACCTCCTCCTTTAAAACCAGA 60.203 45.833 0.00 0.00 32.53 3.86
3038 3207 4.368565 ACCTCCTCCTTTAAAACCAGAC 57.631 45.455 0.00 0.00 0.00 3.51
3039 3208 3.981375 ACCTCCTCCTTTAAAACCAGACT 59.019 43.478 0.00 0.00 0.00 3.24
3040 3209 5.160386 ACCTCCTCCTTTAAAACCAGACTA 58.840 41.667 0.00 0.00 0.00 2.59
3041 3210 5.248705 ACCTCCTCCTTTAAAACCAGACTAG 59.751 44.000 0.00 0.00 0.00 2.57
3042 3211 5.484290 CCTCCTCCTTTAAAACCAGACTAGA 59.516 44.000 0.00 0.00 0.00 2.43
3043 3212 6.013639 CCTCCTCCTTTAAAACCAGACTAGAA 60.014 42.308 0.00 0.00 0.00 2.10
3044 3213 6.766429 TCCTCCTTTAAAACCAGACTAGAAC 58.234 40.000 0.00 0.00 0.00 3.01
3045 3214 6.328148 TCCTCCTTTAAAACCAGACTAGAACA 59.672 38.462 0.00 0.00 0.00 3.18
3046 3215 7.017254 TCCTCCTTTAAAACCAGACTAGAACAT 59.983 37.037 0.00 0.00 0.00 2.71
3047 3216 7.334671 CCTCCTTTAAAACCAGACTAGAACATC 59.665 40.741 0.00 0.00 0.00 3.06
3048 3217 7.741785 TCCTTTAAAACCAGACTAGAACATCA 58.258 34.615 0.00 0.00 0.00 3.07
3049 3218 8.215050 TCCTTTAAAACCAGACTAGAACATCAA 58.785 33.333 0.00 0.00 0.00 2.57
3050 3219 8.507249 CCTTTAAAACCAGACTAGAACATCAAG 58.493 37.037 0.00 0.00 0.00 3.02
3051 3220 9.273016 CTTTAAAACCAGACTAGAACATCAAGA 57.727 33.333 0.00 0.00 0.00 3.02
3052 3221 9.793259 TTTAAAACCAGACTAGAACATCAAGAT 57.207 29.630 0.00 0.00 0.00 2.40
3053 3222 7.678947 AAAACCAGACTAGAACATCAAGATG 57.321 36.000 8.45 8.45 44.15 2.90
3054 3223 4.764172 ACCAGACTAGAACATCAAGATGC 58.236 43.478 9.85 0.00 42.39 3.91
3055 3224 3.801050 CCAGACTAGAACATCAAGATGCG 59.199 47.826 9.85 0.00 42.39 4.73
3056 3225 3.244814 CAGACTAGAACATCAAGATGCGC 59.755 47.826 9.85 0.00 42.39 6.09
3057 3226 2.196749 ACTAGAACATCAAGATGCGCG 58.803 47.619 0.00 0.00 42.39 6.86
3058 3227 2.196749 CTAGAACATCAAGATGCGCGT 58.803 47.619 8.43 0.00 42.39 6.01
3059 3228 1.442769 AGAACATCAAGATGCGCGTT 58.557 45.000 8.43 0.00 42.39 4.84
3060 3229 1.129251 AGAACATCAAGATGCGCGTTG 59.871 47.619 8.43 7.12 42.39 4.10
3061 3230 0.454957 AACATCAAGATGCGCGTTGC 60.455 50.000 8.43 0.00 42.39 4.17
3062 3231 1.584483 CATCAAGATGCGCGTTGCC 60.584 57.895 8.43 0.00 45.60 4.52
3063 3232 3.099619 ATCAAGATGCGCGTTGCCG 62.100 57.895 8.43 0.00 45.60 5.69
3081 3250 4.812476 CGCCCGCCATCTTGACGA 62.812 66.667 0.00 0.00 0.00 4.20
3082 3251 2.435938 GCCCGCCATCTTGACGAA 60.436 61.111 0.00 0.00 0.00 3.85
3083 3252 2.464459 GCCCGCCATCTTGACGAAG 61.464 63.158 0.00 0.00 0.00 3.79
3084 3253 1.815421 CCCGCCATCTTGACGAAGG 60.815 63.158 0.00 0.00 33.61 3.46
3085 3254 1.218047 CCGCCATCTTGACGAAGGA 59.782 57.895 0.00 0.00 32.13 3.36
3086 3255 0.391130 CCGCCATCTTGACGAAGGAA 60.391 55.000 0.00 0.00 32.13 3.36
3087 3256 1.656652 CGCCATCTTGACGAAGGAAT 58.343 50.000 0.00 0.00 32.13 3.01
3088 3257 2.483013 CCGCCATCTTGACGAAGGAATA 60.483 50.000 0.00 0.00 32.13 1.75
3089 3258 3.393800 CGCCATCTTGACGAAGGAATAT 58.606 45.455 0.00 0.00 32.13 1.28
3090 3259 3.430218 CGCCATCTTGACGAAGGAATATC 59.570 47.826 0.00 0.00 32.13 1.63
3091 3260 4.380531 GCCATCTTGACGAAGGAATATCA 58.619 43.478 0.00 0.00 32.13 2.15
3092 3261 4.816385 GCCATCTTGACGAAGGAATATCAA 59.184 41.667 0.00 0.00 32.13 2.57
3093 3262 5.049818 GCCATCTTGACGAAGGAATATCAAG 60.050 44.000 6.51 6.51 46.18 3.02
3127 3296 7.797121 ATATTGGTGAAAAGAAATGGAAGGT 57.203 32.000 0.00 0.00 0.00 3.50
3128 3297 8.893563 ATATTGGTGAAAAGAAATGGAAGGTA 57.106 30.769 0.00 0.00 0.00 3.08
3129 3298 7.797121 ATTGGTGAAAAGAAATGGAAGGTAT 57.203 32.000 0.00 0.00 0.00 2.73
3130 3299 8.893563 ATTGGTGAAAAGAAATGGAAGGTATA 57.106 30.769 0.00 0.00 0.00 1.47
3131 3300 8.713708 TTGGTGAAAAGAAATGGAAGGTATAA 57.286 30.769 0.00 0.00 0.00 0.98
3132 3301 8.893563 TGGTGAAAAGAAATGGAAGGTATAAT 57.106 30.769 0.00 0.00 0.00 1.28
3133 3302 9.320295 TGGTGAAAAGAAATGGAAGGTATAATT 57.680 29.630 0.00 0.00 0.00 1.40
3157 3326 8.877864 TTACCAATGGAGATTTGAATTACAGT 57.122 30.769 6.16 0.00 0.00 3.55
3158 3327 9.967451 TTACCAATGGAGATTTGAATTACAGTA 57.033 29.630 6.16 0.00 0.00 2.74
3159 3328 8.281212 ACCAATGGAGATTTGAATTACAGTAC 57.719 34.615 6.16 0.00 0.00 2.73
3160 3329 7.339466 ACCAATGGAGATTTGAATTACAGTACC 59.661 37.037 6.16 0.00 0.00 3.34
3161 3330 7.557719 CCAATGGAGATTTGAATTACAGTACCT 59.442 37.037 0.00 0.00 0.00 3.08
3162 3331 8.960591 CAATGGAGATTTGAATTACAGTACCTT 58.039 33.333 0.00 0.00 0.00 3.50
3164 3333 9.838339 ATGGAGATTTGAATTACAGTACCTTAG 57.162 33.333 0.00 0.00 0.00 2.18
3165 3334 8.822805 TGGAGATTTGAATTACAGTACCTTAGT 58.177 33.333 0.00 0.00 0.00 2.24
3166 3335 9.668497 GGAGATTTGAATTACAGTACCTTAGTT 57.332 33.333 0.00 0.00 0.00 2.24
3173 3342 9.701098 TGAATTACAGTACCTTAGTTTGTAGTG 57.299 33.333 0.00 0.00 41.83 2.74
3174 3343 9.148104 GAATTACAGTACCTTAGTTTGTAGTGG 57.852 37.037 8.77 0.00 40.89 4.00
3175 3344 5.479124 ACAGTACCTTAGTTTGTAGTGGG 57.521 43.478 8.77 0.00 40.89 4.61
3176 3345 4.285260 ACAGTACCTTAGTTTGTAGTGGGG 59.715 45.833 8.77 0.00 40.89 4.96
3177 3346 4.529377 CAGTACCTTAGTTTGTAGTGGGGA 59.471 45.833 0.00 0.00 35.63 4.81
3178 3347 4.529769 AGTACCTTAGTTTGTAGTGGGGAC 59.470 45.833 0.00 0.00 0.00 4.46
3179 3348 3.595021 ACCTTAGTTTGTAGTGGGGACT 58.405 45.455 0.00 0.00 0.00 3.85
3180 3349 4.755437 ACCTTAGTTTGTAGTGGGGACTA 58.245 43.478 0.00 0.00 0.00 2.59
3181 3350 4.529769 ACCTTAGTTTGTAGTGGGGACTAC 59.470 45.833 5.57 5.57 42.05 2.73
3182 3351 4.381292 CCTTAGTTTGTAGTGGGGACTACG 60.381 50.000 7.64 0.00 43.99 3.51
3183 3352 2.880443 AGTTTGTAGTGGGGACTACGA 58.120 47.619 7.64 3.58 43.99 3.43
3184 3353 3.438183 AGTTTGTAGTGGGGACTACGAT 58.562 45.455 7.64 0.00 43.99 3.73
3185 3354 4.603131 AGTTTGTAGTGGGGACTACGATA 58.397 43.478 7.64 0.00 43.99 2.92
3186 3355 4.400567 AGTTTGTAGTGGGGACTACGATAC 59.599 45.833 7.64 5.85 43.99 2.24
3187 3356 3.650281 TGTAGTGGGGACTACGATACA 57.350 47.619 7.64 0.00 43.99 2.29
3188 3357 4.174704 TGTAGTGGGGACTACGATACAT 57.825 45.455 7.64 0.00 43.99 2.29
3189 3358 4.539726 TGTAGTGGGGACTACGATACATT 58.460 43.478 7.64 0.00 43.99 2.71
3190 3359 4.957954 TGTAGTGGGGACTACGATACATTT 59.042 41.667 7.64 0.00 43.99 2.32
3191 3360 6.128486 TGTAGTGGGGACTACGATACATTTA 58.872 40.000 7.64 0.00 43.99 1.40
3192 3361 5.786264 AGTGGGGACTACGATACATTTAG 57.214 43.478 0.00 0.00 0.00 1.85
3193 3362 5.452255 AGTGGGGACTACGATACATTTAGA 58.548 41.667 0.00 0.00 0.00 2.10
3194 3363 5.895534 AGTGGGGACTACGATACATTTAGAA 59.104 40.000 0.00 0.00 0.00 2.10
3195 3364 6.553852 AGTGGGGACTACGATACATTTAGAAT 59.446 38.462 0.00 0.00 0.00 2.40
3196 3365 7.727186 AGTGGGGACTACGATACATTTAGAATA 59.273 37.037 0.00 0.00 0.00 1.75
3197 3366 8.362639 GTGGGGACTACGATACATTTAGAATAA 58.637 37.037 0.00 0.00 0.00 1.40
3198 3367 9.096823 TGGGGACTACGATACATTTAGAATAAT 57.903 33.333 0.00 0.00 0.00 1.28
3199 3368 9.939802 GGGGACTACGATACATTTAGAATAATT 57.060 33.333 0.00 0.00 0.00 1.40
3223 3392 8.887264 TTCTTATAGAAGGGCCAATTTAAACA 57.113 30.769 6.18 0.00 33.09 2.83
3224 3393 8.887264 TCTTATAGAAGGGCCAATTTAAACAA 57.113 30.769 6.18 0.00 33.09 2.83
3225 3394 8.745590 TCTTATAGAAGGGCCAATTTAAACAAC 58.254 33.333 6.18 0.00 33.09 3.32
3226 3395 4.617253 AGAAGGGCCAATTTAAACAACC 57.383 40.909 6.18 0.00 0.00 3.77
3227 3396 3.326588 AGAAGGGCCAATTTAAACAACCC 59.673 43.478 6.18 8.65 36.04 4.11
3228 3397 2.984672 AGGGCCAATTTAAACAACCCT 58.015 42.857 6.18 12.11 41.45 4.34
3229 3398 2.903784 AGGGCCAATTTAAACAACCCTC 59.096 45.455 6.18 0.00 42.65 4.30
3230 3399 2.635427 GGGCCAATTTAAACAACCCTCA 59.365 45.455 4.39 0.00 32.88 3.86
3231 3400 3.071747 GGGCCAATTTAAACAACCCTCAA 59.928 43.478 4.39 0.00 32.88 3.02
3232 3401 4.445019 GGGCCAATTTAAACAACCCTCAAA 60.445 41.667 4.39 0.00 32.88 2.69
3233 3402 5.312895 GGCCAATTTAAACAACCCTCAAAT 58.687 37.500 0.00 0.00 0.00 2.32
3234 3403 6.468543 GGCCAATTTAAACAACCCTCAAATA 58.531 36.000 0.00 0.00 0.00 1.40
3235 3404 7.109501 GGCCAATTTAAACAACCCTCAAATAT 58.890 34.615 0.00 0.00 0.00 1.28
3236 3405 7.279981 GGCCAATTTAAACAACCCTCAAATATC 59.720 37.037 0.00 0.00 0.00 1.63
3237 3406 8.040727 GCCAATTTAAACAACCCTCAAATATCT 58.959 33.333 0.00 0.00 0.00 1.98
3238 3407 9.942850 CCAATTTAAACAACCCTCAAATATCTT 57.057 29.630 0.00 0.00 0.00 2.40
3241 3410 8.825667 TTTAAACAACCCTCAAATATCTTTGC 57.174 30.769 0.00 0.00 41.29 3.68
3242 3411 6.418057 AAACAACCCTCAAATATCTTTGCA 57.582 33.333 0.00 0.00 41.29 4.08
3243 3412 6.610075 AACAACCCTCAAATATCTTTGCAT 57.390 33.333 0.00 0.00 41.29 3.96
3244 3413 7.716799 AACAACCCTCAAATATCTTTGCATA 57.283 32.000 0.00 0.00 41.29 3.14
3245 3414 7.716799 ACAACCCTCAAATATCTTTGCATAA 57.283 32.000 0.00 0.00 41.29 1.90
3246 3415 7.775120 ACAACCCTCAAATATCTTTGCATAAG 58.225 34.615 0.00 0.00 41.29 1.73
3247 3416 7.397192 ACAACCCTCAAATATCTTTGCATAAGT 59.603 33.333 0.00 0.00 41.29 2.24
3248 3417 7.573968 ACCCTCAAATATCTTTGCATAAGTC 57.426 36.000 0.00 0.00 41.29 3.01
3249 3418 6.547510 ACCCTCAAATATCTTTGCATAAGTCC 59.452 38.462 0.00 0.00 41.29 3.85
3250 3419 6.774656 CCCTCAAATATCTTTGCATAAGTCCT 59.225 38.462 0.00 0.00 41.29 3.85
3251 3420 7.040823 CCCTCAAATATCTTTGCATAAGTCCTC 60.041 40.741 0.00 0.00 41.29 3.71
3252 3421 7.500227 CCTCAAATATCTTTGCATAAGTCCTCA 59.500 37.037 0.00 0.00 41.29 3.86
3253 3422 8.442632 TCAAATATCTTTGCATAAGTCCTCAG 57.557 34.615 0.00 0.00 41.29 3.35
3254 3423 6.874288 AATATCTTTGCATAAGTCCTCAGC 57.126 37.500 0.00 0.00 0.00 4.26
3255 3424 2.991250 TCTTTGCATAAGTCCTCAGCC 58.009 47.619 0.00 0.00 0.00 4.85
3256 3425 2.019984 CTTTGCATAAGTCCTCAGCCC 58.980 52.381 0.00 0.00 0.00 5.19
3257 3426 0.991146 TTGCATAAGTCCTCAGCCCA 59.009 50.000 0.00 0.00 0.00 5.36
3258 3427 0.253044 TGCATAAGTCCTCAGCCCAC 59.747 55.000 0.00 0.00 0.00 4.61
3259 3428 0.253044 GCATAAGTCCTCAGCCCACA 59.747 55.000 0.00 0.00 0.00 4.17
3260 3429 1.133976 GCATAAGTCCTCAGCCCACAT 60.134 52.381 0.00 0.00 0.00 3.21
3261 3430 2.569059 CATAAGTCCTCAGCCCACATG 58.431 52.381 0.00 0.00 0.00 3.21
3262 3431 1.951209 TAAGTCCTCAGCCCACATGA 58.049 50.000 0.00 0.00 0.00 3.07
3263 3432 1.067295 AAGTCCTCAGCCCACATGAA 58.933 50.000 0.00 0.00 0.00 2.57
3264 3433 1.067295 AGTCCTCAGCCCACATGAAA 58.933 50.000 0.00 0.00 0.00 2.69
3265 3434 1.637553 AGTCCTCAGCCCACATGAAAT 59.362 47.619 0.00 0.00 0.00 2.17
3266 3435 2.042162 AGTCCTCAGCCCACATGAAATT 59.958 45.455 0.00 0.00 0.00 1.82
3267 3436 2.827921 GTCCTCAGCCCACATGAAATTT 59.172 45.455 0.00 0.00 0.00 1.82
3268 3437 3.259123 GTCCTCAGCCCACATGAAATTTT 59.741 43.478 0.00 0.00 0.00 1.82
3269 3438 4.462483 GTCCTCAGCCCACATGAAATTTTA 59.538 41.667 0.00 0.00 0.00 1.52
3270 3439 5.127682 GTCCTCAGCCCACATGAAATTTTAT 59.872 40.000 0.00 0.00 0.00 1.40
3271 3440 6.321181 GTCCTCAGCCCACATGAAATTTTATA 59.679 38.462 0.00 0.00 0.00 0.98
3272 3441 6.894654 TCCTCAGCCCACATGAAATTTTATAA 59.105 34.615 0.00 0.00 0.00 0.98
3273 3442 7.398618 TCCTCAGCCCACATGAAATTTTATAAA 59.601 33.333 0.00 0.00 0.00 1.40
3274 3443 8.206189 CCTCAGCCCACATGAAATTTTATAAAT 58.794 33.333 0.00 0.00 0.00 1.40
3275 3444 9.252962 CTCAGCCCACATGAAATTTTATAAATC 57.747 33.333 0.00 0.00 0.00 2.17
3276 3445 8.756927 TCAGCCCACATGAAATTTTATAAATCA 58.243 29.630 0.00 0.73 0.00 2.57
3277 3446 9.550406 CAGCCCACATGAAATTTTATAAATCAT 57.450 29.630 0.00 6.88 0.00 2.45
3295 3464 9.991906 ATAAATCATTTGCAAATCCATAAGAGG 57.008 29.630 21.70 7.74 0.00 3.69
3296 3465 7.664552 AATCATTTGCAAATCCATAAGAGGA 57.335 32.000 21.70 12.68 43.01 3.71
3297 3466 6.455360 TCATTTGCAAATCCATAAGAGGAC 57.545 37.500 21.70 0.00 41.30 3.85
3298 3467 5.951148 TCATTTGCAAATCCATAAGAGGACA 59.049 36.000 21.70 0.00 41.30 4.02
3299 3468 6.608405 TCATTTGCAAATCCATAAGAGGACAT 59.392 34.615 21.70 0.00 41.30 3.06
3300 3469 7.779326 TCATTTGCAAATCCATAAGAGGACATA 59.221 33.333 21.70 0.00 41.30 2.29
3301 3470 8.582437 CATTTGCAAATCCATAAGAGGACATAT 58.418 33.333 21.70 0.00 41.30 1.78
3302 3471 7.514784 TTGCAAATCCATAAGAGGACATATG 57.485 36.000 0.00 0.00 41.30 1.78
3303 3472 6.840527 TGCAAATCCATAAGAGGACATATGA 58.159 36.000 10.38 0.00 41.30 2.15
3304 3473 6.712095 TGCAAATCCATAAGAGGACATATGAC 59.288 38.462 10.38 2.65 41.30 3.06
3305 3474 6.939163 GCAAATCCATAAGAGGACATATGACT 59.061 38.462 10.38 7.05 41.30 3.41
3306 3475 8.097038 GCAAATCCATAAGAGGACATATGACTA 58.903 37.037 10.38 0.00 41.30 2.59
3311 3480 9.480861 TCCATAAGAGGACATATGACTATAAGG 57.519 37.037 10.38 9.87 31.77 2.69
3312 3481 9.480861 CCATAAGAGGACATATGACTATAAGGA 57.519 37.037 10.38 0.00 31.77 3.36
3316 3485 9.523168 AAGAGGACATATGACTATAAGGAGTAC 57.477 37.037 10.38 0.00 0.00 2.73
3317 3486 8.670490 AGAGGACATATGACTATAAGGAGTACA 58.330 37.037 10.38 0.00 0.00 2.90
3318 3487 9.469097 GAGGACATATGACTATAAGGAGTACAT 57.531 37.037 10.38 0.00 0.00 2.29
3319 3488 9.830186 AGGACATATGACTATAAGGAGTACATT 57.170 33.333 10.38 0.00 0.00 2.71
3351 3520 9.875675 GATTGACAATGAGAGATAATTAGTTGC 57.124 33.333 5.14 0.00 0.00 4.17
3352 3521 8.791327 TTGACAATGAGAGATAATTAGTTGCA 57.209 30.769 0.00 0.00 0.00 4.08
3353 3522 8.791327 TGACAATGAGAGATAATTAGTTGCAA 57.209 30.769 0.00 0.00 0.00 4.08
3354 3523 9.230122 TGACAATGAGAGATAATTAGTTGCAAA 57.770 29.630 0.00 0.00 0.00 3.68
3387 3556 7.751732 TGAGATATAATTATGATTTGTGCCGC 58.248 34.615 8.28 0.00 0.00 6.53
3388 3557 6.775088 AGATATAATTATGATTTGTGCCGCG 58.225 36.000 8.28 0.00 0.00 6.46
3389 3558 6.593770 AGATATAATTATGATTTGTGCCGCGA 59.406 34.615 8.23 0.00 0.00 5.87
3390 3559 3.773860 AATTATGATTTGTGCCGCGAA 57.226 38.095 8.23 0.00 0.00 4.70
3391 3560 2.823196 TTATGATTTGTGCCGCGAAG 57.177 45.000 8.23 0.00 0.00 3.79
3392 3561 1.732941 TATGATTTGTGCCGCGAAGT 58.267 45.000 8.23 0.00 0.00 3.01
3393 3562 1.732941 ATGATTTGTGCCGCGAAGTA 58.267 45.000 8.23 0.00 0.00 2.24
3394 3563 0.793861 TGATTTGTGCCGCGAAGTAC 59.206 50.000 8.23 1.38 0.00 2.73
3395 3564 0.793861 GATTTGTGCCGCGAAGTACA 59.206 50.000 8.23 4.67 0.00 2.90
3396 3565 0.796312 ATTTGTGCCGCGAAGTACAG 59.204 50.000 8.23 0.00 0.00 2.74
3397 3566 0.249531 TTTGTGCCGCGAAGTACAGA 60.250 50.000 8.23 0.00 0.00 3.41
3398 3567 0.249531 TTGTGCCGCGAAGTACAGAA 60.250 50.000 8.23 0.00 0.00 3.02
3399 3568 0.249531 TGTGCCGCGAAGTACAGAAA 60.250 50.000 8.23 0.00 0.00 2.52
3400 3569 1.076332 GTGCCGCGAAGTACAGAAAT 58.924 50.000 8.23 0.00 0.00 2.17
3401 3570 1.075542 TGCCGCGAAGTACAGAAATG 58.924 50.000 8.23 0.00 0.00 2.32
3402 3571 1.337354 TGCCGCGAAGTACAGAAATGA 60.337 47.619 8.23 0.00 0.00 2.57
3403 3572 1.060698 GCCGCGAAGTACAGAAATGAC 59.939 52.381 8.23 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.765176 TCATGAAAGTGCAAAAGTGATGAG 58.235 37.500 0.00 0.00 0.00 2.90
1 2 5.771153 TCATGAAAGTGCAAAAGTGATGA 57.229 34.783 0.00 0.00 0.00 2.92
2 3 5.404366 CCTTCATGAAAGTGCAAAAGTGATG 59.596 40.000 9.88 0.00 32.69 3.07
3 4 5.069516 ACCTTCATGAAAGTGCAAAAGTGAT 59.930 36.000 8.92 0.00 32.69 3.06
4 5 4.402155 ACCTTCATGAAAGTGCAAAAGTGA 59.598 37.500 8.92 0.00 32.69 3.41
5 6 4.685924 ACCTTCATGAAAGTGCAAAAGTG 58.314 39.130 8.92 0.00 32.69 3.16
6 7 4.498009 CGACCTTCATGAAAGTGCAAAAGT 60.498 41.667 14.39 0.00 32.69 2.66
7 8 3.976942 CGACCTTCATGAAAGTGCAAAAG 59.023 43.478 14.39 0.00 32.69 2.27
8 9 3.243367 CCGACCTTCATGAAAGTGCAAAA 60.243 43.478 14.39 0.00 32.69 2.44
9 10 2.293122 CCGACCTTCATGAAAGTGCAAA 59.707 45.455 14.39 0.00 32.69 3.68
10 11 1.879380 CCGACCTTCATGAAAGTGCAA 59.121 47.619 14.39 0.00 32.69 4.08
11 12 1.522668 CCGACCTTCATGAAAGTGCA 58.477 50.000 14.39 0.00 32.69 4.57
12 13 0.804989 CCCGACCTTCATGAAAGTGC 59.195 55.000 14.39 5.69 32.69 4.40
13 14 0.804989 GCCCGACCTTCATGAAAGTG 59.195 55.000 14.39 6.14 32.69 3.16
14 15 0.322546 GGCCCGACCTTCATGAAAGT 60.323 55.000 9.48 9.48 32.69 2.66
15 16 1.369091 CGGCCCGACCTTCATGAAAG 61.369 60.000 9.88 6.02 35.61 2.62
16 17 1.376683 CGGCCCGACCTTCATGAAA 60.377 57.895 9.88 0.00 35.61 2.69
17 18 2.267642 CGGCCCGACCTTCATGAA 59.732 61.111 8.12 8.12 35.61 2.57
18 19 3.781307 CCGGCCCGACCTTCATGA 61.781 66.667 3.71 0.00 35.61 3.07
19 20 4.856801 CCCGGCCCGACCTTCATG 62.857 72.222 3.71 0.00 35.61 3.07
49 50 2.220133 CGAATACATAAAAGCCCGTCGG 59.780 50.000 3.60 3.60 0.00 4.79
50 51 2.220133 CCGAATACATAAAAGCCCGTCG 59.780 50.000 0.00 0.00 0.00 5.12
51 52 2.546789 CCCGAATACATAAAAGCCCGTC 59.453 50.000 0.00 0.00 0.00 4.79
52 53 2.092807 ACCCGAATACATAAAAGCCCGT 60.093 45.455 0.00 0.00 0.00 5.28
53 54 2.546789 GACCCGAATACATAAAAGCCCG 59.453 50.000 0.00 0.00 0.00 6.13
54 55 2.546789 CGACCCGAATACATAAAAGCCC 59.453 50.000 0.00 0.00 0.00 5.19
55 56 3.460103 TCGACCCGAATACATAAAAGCC 58.540 45.455 0.00 0.00 31.06 4.35
56 57 3.059800 GCTCGACCCGAATACATAAAAGC 60.060 47.826 0.00 0.00 34.74 3.51
57 58 4.369182 AGCTCGACCCGAATACATAAAAG 58.631 43.478 0.00 0.00 34.74 2.27
58 59 4.365723 GAGCTCGACCCGAATACATAAAA 58.634 43.478 0.00 0.00 34.74 1.52
59 60 3.549423 CGAGCTCGACCCGAATACATAAA 60.549 47.826 32.06 0.00 43.02 1.40
60 61 2.031420 CGAGCTCGACCCGAATACATAA 60.031 50.000 32.06 0.00 43.02 1.90
61 62 1.534163 CGAGCTCGACCCGAATACATA 59.466 52.381 32.06 0.00 43.02 2.29
62 63 0.311165 CGAGCTCGACCCGAATACAT 59.689 55.000 32.06 0.00 43.02 2.29
63 64 1.721664 CCGAGCTCGACCCGAATACA 61.722 60.000 36.59 0.00 43.02 2.29
64 65 1.008767 CCGAGCTCGACCCGAATAC 60.009 63.158 36.59 0.00 43.02 1.89
65 66 2.191513 CCCGAGCTCGACCCGAATA 61.192 63.158 36.59 0.00 43.02 1.75
66 67 3.528370 CCCGAGCTCGACCCGAAT 61.528 66.667 36.59 0.00 43.02 3.34
77 78 1.581447 CCTGTTTTTGAGCCCGAGC 59.419 57.895 0.00 0.00 40.32 5.03
78 79 1.581447 GCCTGTTTTTGAGCCCGAG 59.419 57.895 0.00 0.00 0.00 4.63
79 80 1.901464 GGCCTGTTTTTGAGCCCGA 60.901 57.895 0.00 0.00 39.60 5.14
80 81 2.650778 GGCCTGTTTTTGAGCCCG 59.349 61.111 0.00 0.00 39.60 6.13
82 83 1.067354 CATCAGGCCTGTTTTTGAGCC 60.067 52.381 31.58 0.00 46.13 4.70
83 84 1.067354 CCATCAGGCCTGTTTTTGAGC 60.067 52.381 31.58 0.00 0.00 4.26
84 85 2.229784 GTCCATCAGGCCTGTTTTTGAG 59.770 50.000 31.58 16.97 33.74 3.02
85 86 2.238521 GTCCATCAGGCCTGTTTTTGA 58.761 47.619 31.58 18.41 33.74 2.69
86 87 1.068333 CGTCCATCAGGCCTGTTTTTG 60.068 52.381 31.58 22.31 33.74 2.44
87 88 1.247567 CGTCCATCAGGCCTGTTTTT 58.752 50.000 31.58 12.92 33.74 1.94
88 89 0.609131 CCGTCCATCAGGCCTGTTTT 60.609 55.000 31.58 15.43 33.74 2.43
89 90 1.002134 CCGTCCATCAGGCCTGTTT 60.002 57.895 31.58 17.98 33.74 2.83
90 91 2.671070 CCGTCCATCAGGCCTGTT 59.329 61.111 31.58 21.63 33.74 3.16
91 92 3.402681 CCCGTCCATCAGGCCTGT 61.403 66.667 31.58 16.68 33.74 4.00
92 93 4.864334 GCCCGTCCATCAGGCCTG 62.864 72.222 27.87 27.87 41.00 4.85
111 112 3.647771 AAACTCAGGTCCGGGCCC 61.648 66.667 24.89 13.57 0.00 5.80
112 113 2.359975 CAAACTCAGGTCCGGGCC 60.360 66.667 20.43 20.43 0.00 5.80
113 114 3.056328 GCAAACTCAGGTCCGGGC 61.056 66.667 0.00 0.00 0.00 6.13
114 115 2.359975 GGCAAACTCAGGTCCGGG 60.360 66.667 0.00 0.00 0.00 5.73
115 116 2.359975 GGGCAAACTCAGGTCCGG 60.360 66.667 0.00 0.00 0.00 5.14
116 117 2.742372 CGGGCAAACTCAGGTCCG 60.742 66.667 0.00 0.00 0.00 4.79
117 118 2.359975 CCGGGCAAACTCAGGTCC 60.360 66.667 0.00 0.00 0.00 4.46
118 119 1.671379 GTCCGGGCAAACTCAGGTC 60.671 63.158 0.00 0.00 0.00 3.85
119 120 2.430367 GTCCGGGCAAACTCAGGT 59.570 61.111 0.00 0.00 0.00 4.00
120 121 2.359975 GGTCCGGGCAAACTCAGG 60.360 66.667 9.07 0.00 0.00 3.86
121 122 2.742372 CGGTCCGGGCAAACTCAG 60.742 66.667 9.07 0.00 0.00 3.35
122 123 4.323477 CCGGTCCGGGCAAACTCA 62.323 66.667 23.59 0.00 44.15 3.41
133 134 3.925090 CATACCTCGGGCCGGTCC 61.925 72.222 27.98 17.58 35.98 4.46
134 135 3.925090 CCATACCTCGGGCCGGTC 61.925 72.222 27.98 0.00 35.98 4.79
140 141 0.836400 ATACCTGGCCATACCTCGGG 60.836 60.000 5.51 4.26 40.22 5.14
141 142 1.825474 CTATACCTGGCCATACCTCGG 59.175 57.143 5.51 5.16 40.22 4.63
142 143 1.825474 CCTATACCTGGCCATACCTCG 59.175 57.143 5.51 0.00 40.22 4.63
143 144 1.555533 GCCTATACCTGGCCATACCTC 59.444 57.143 5.51 0.00 44.32 3.85
144 145 1.657804 GCCTATACCTGGCCATACCT 58.342 55.000 5.51 0.00 44.32 3.08
151 152 1.301795 GCTTCCGCCTATACCTGGC 60.302 63.158 0.00 0.00 46.42 4.85
152 153 0.318762 GAGCTTCCGCCTATACCTGG 59.681 60.000 0.00 0.00 36.60 4.45
153 154 0.318762 GGAGCTTCCGCCTATACCTG 59.681 60.000 0.00 0.00 36.60 4.00
154 155 0.832559 GGGAGCTTCCGCCTATACCT 60.833 60.000 0.00 0.00 37.43 3.08
155 156 1.672320 GGGAGCTTCCGCCTATACC 59.328 63.158 0.00 0.00 37.43 2.73
156 157 1.672320 GGGGAGCTTCCGCCTATAC 59.328 63.158 4.51 0.00 43.03 1.47
157 158 1.906824 CGGGGAGCTTCCGCCTATA 60.907 63.158 14.88 0.00 45.71 1.31
158 159 3.234730 CGGGGAGCTTCCGCCTAT 61.235 66.667 14.88 0.00 45.71 2.57
159 160 3.751049 ATCGGGGAGCTTCCGCCTA 62.751 63.158 20.31 5.11 45.71 3.93
176 177 4.819105 TTACCTGGTCTCGTGATTGAAT 57.181 40.909 0.63 0.00 0.00 2.57
200 201 1.897137 CAGCAGCATCGCCATCCAT 60.897 57.895 0.00 0.00 0.00 3.41
201 202 2.515290 CAGCAGCATCGCCATCCA 60.515 61.111 0.00 0.00 0.00 3.41
202 203 3.962421 GCAGCAGCATCGCCATCC 61.962 66.667 0.00 0.00 41.58 3.51
203 204 4.309347 CGCAGCAGCATCGCCATC 62.309 66.667 0.82 0.00 42.27 3.51
242 243 1.740025 GAGGTGAAATCGAAAGCTGGG 59.260 52.381 0.00 0.00 0.00 4.45
311 314 6.177610 AGAAAAGTTGGTCTGACTTTGTACA 58.822 36.000 7.85 0.00 44.24 2.90
312 315 6.679327 AGAAAAGTTGGTCTGACTTTGTAC 57.321 37.500 7.85 0.00 44.24 2.90
326 329 3.551659 GCCTGCTTCTCCAAGAAAAGTTG 60.552 47.826 0.00 0.00 33.19 3.16
360 363 1.681166 CGACCGTTCCTCTCCCTCTAA 60.681 57.143 0.00 0.00 0.00 2.10
367 370 2.504244 CGTGCGACCGTTCCTCTC 60.504 66.667 0.00 0.00 0.00 3.20
376 379 2.886124 GGCTAAGCTCGTGCGACC 60.886 66.667 3.48 0.92 45.42 4.79
424 431 3.813166 CGCTGTTCCTCTTCCTGTAAAAA 59.187 43.478 0.00 0.00 0.00 1.94
425 432 3.399330 CGCTGTTCCTCTTCCTGTAAAA 58.601 45.455 0.00 0.00 0.00 1.52
426 433 2.870435 GCGCTGTTCCTCTTCCTGTAAA 60.870 50.000 0.00 0.00 0.00 2.01
427 434 1.337823 GCGCTGTTCCTCTTCCTGTAA 60.338 52.381 0.00 0.00 0.00 2.41
428 435 0.246635 GCGCTGTTCCTCTTCCTGTA 59.753 55.000 0.00 0.00 0.00 2.74
429 436 1.004440 GCGCTGTTCCTCTTCCTGT 60.004 57.895 0.00 0.00 0.00 4.00
430 437 1.004560 TGCGCTGTTCCTCTTCCTG 60.005 57.895 9.73 0.00 0.00 3.86
431 438 1.004440 GTGCGCTGTTCCTCTTCCT 60.004 57.895 9.73 0.00 0.00 3.36
432 439 2.383527 CGTGCGCTGTTCCTCTTCC 61.384 63.158 9.73 0.00 0.00 3.46
433 440 1.347817 CTCGTGCGCTGTTCCTCTTC 61.348 60.000 9.73 0.00 0.00 2.87
434 441 1.373497 CTCGTGCGCTGTTCCTCTT 60.373 57.895 9.73 0.00 0.00 2.85
435 442 2.259818 CTCGTGCGCTGTTCCTCT 59.740 61.111 9.73 0.00 0.00 3.69
436 443 2.209064 TACCTCGTGCGCTGTTCCTC 62.209 60.000 9.73 0.00 0.00 3.71
437 444 2.214181 CTACCTCGTGCGCTGTTCCT 62.214 60.000 9.73 0.00 0.00 3.36
438 445 1.805945 CTACCTCGTGCGCTGTTCC 60.806 63.158 9.73 0.00 0.00 3.62
439 446 2.445438 GCTACCTCGTGCGCTGTTC 61.445 63.158 9.73 0.00 0.00 3.18
440 447 2.432628 GCTACCTCGTGCGCTGTT 60.433 61.111 9.73 0.00 0.00 3.16
441 448 4.436998 GGCTACCTCGTGCGCTGT 62.437 66.667 9.73 0.45 0.00 4.40
605 612 4.918201 CCGGCTCGAGGCATTCCC 62.918 72.222 34.57 16.01 44.01 3.97
672 679 2.029518 GCCAACAACCAAGCAGGC 59.970 61.111 0.00 0.00 43.14 4.85
693 700 6.573434 TCGCATCAGGATATGTATATGGAAC 58.427 40.000 0.00 0.00 0.00 3.62
701 708 4.452114 GCATGTTTCGCATCAGGATATGTA 59.548 41.667 0.00 0.00 35.19 2.29
702 709 3.251729 GCATGTTTCGCATCAGGATATGT 59.748 43.478 0.00 0.00 35.19 2.29
703 710 3.251487 TGCATGTTTCGCATCAGGATATG 59.749 43.478 0.00 0.00 35.19 1.78
704 711 3.479489 TGCATGTTTCGCATCAGGATAT 58.521 40.909 0.00 0.00 35.19 1.63
705 712 2.916640 TGCATGTTTCGCATCAGGATA 58.083 42.857 0.00 0.00 35.19 2.59
706 713 1.753930 TGCATGTTTCGCATCAGGAT 58.246 45.000 0.00 0.00 35.19 3.24
707 714 3.246403 TGCATGTTTCGCATCAGGA 57.754 47.368 0.00 0.00 35.19 3.86
713 720 1.135831 CAACCGTATGCATGTTTCGCA 60.136 47.619 10.16 0.00 44.94 5.10
714 721 1.534028 CAACCGTATGCATGTTTCGC 58.466 50.000 10.16 0.00 0.00 4.70
715 722 1.466950 ACCAACCGTATGCATGTTTCG 59.533 47.619 10.16 8.72 0.00 3.46
716 723 2.415357 CCACCAACCGTATGCATGTTTC 60.415 50.000 10.16 0.00 0.00 2.78
717 724 1.543802 CCACCAACCGTATGCATGTTT 59.456 47.619 10.16 0.00 0.00 2.83
718 725 1.173043 CCACCAACCGTATGCATGTT 58.827 50.000 10.16 1.84 0.00 2.71
719 726 0.679640 CCCACCAACCGTATGCATGT 60.680 55.000 10.16 0.00 0.00 3.21
720 727 0.393673 TCCCACCAACCGTATGCATG 60.394 55.000 10.16 0.00 0.00 4.06
721 728 0.107214 CTCCCACCAACCGTATGCAT 60.107 55.000 3.79 3.79 0.00 3.96
722 729 1.298340 CTCCCACCAACCGTATGCA 59.702 57.895 0.00 0.00 0.00 3.96
723 730 2.112815 GCTCCCACCAACCGTATGC 61.113 63.158 0.00 0.00 0.00 3.14
728 738 2.742372 CTTCGCTCCCACCAACCG 60.742 66.667 0.00 0.00 0.00 4.44
748 768 5.068591 TCCGGGATATGATACAATATGTCCG 59.931 44.000 0.00 0.00 35.96 4.79
758 778 7.222000 GATCTTAGGATCCGGGATATGATAC 57.778 44.000 10.08 0.00 41.70 2.24
862 886 4.448210 TCTCCGCTAACAAGAACAAAGTT 58.552 39.130 0.00 0.00 0.00 2.66
863 887 4.058817 CTCTCCGCTAACAAGAACAAAGT 58.941 43.478 0.00 0.00 0.00 2.66
869 893 3.014623 TCGATCTCTCCGCTAACAAGAA 58.985 45.455 0.00 0.00 0.00 2.52
920 981 2.658593 CTAGATTGTCCGGCGCCG 60.659 66.667 41.00 41.00 39.44 6.46
921 982 2.925162 AAGCTAGATTGTCCGGCGCC 62.925 60.000 19.07 19.07 0.00 6.53
941 1002 0.726827 TATAACTGCTTGCAGCGTGC 59.273 50.000 20.92 2.80 46.26 5.34
942 1003 2.002586 AGTATAACTGCTTGCAGCGTG 58.997 47.619 20.92 0.51 46.26 5.34
948 1013 4.265556 CGACAGTGTAGTATAACTGCTTGC 59.734 45.833 13.22 0.00 46.28 4.01
973 1043 1.342082 CCGCGTGTGTACAGTAGTGC 61.342 60.000 4.92 0.00 0.00 4.40
978 1048 0.034337 AATTCCCGCGTGTGTACAGT 59.966 50.000 4.92 0.00 0.00 3.55
981 1051 0.733566 TCGAATTCCCGCGTGTGTAC 60.734 55.000 4.92 0.00 0.00 2.90
999 1073 1.097547 CCATGGAGTCAACCGCCATC 61.098 60.000 5.56 0.00 40.29 3.51
1698 1792 4.388499 GGCCCAACCGCGAAGAGA 62.388 66.667 8.23 0.00 0.00 3.10
2079 2197 2.357034 GTCGAGTTCCAGCCGCAA 60.357 61.111 0.00 0.00 0.00 4.85
2268 2386 1.005037 TTTGTCCGTGAGCATCGCT 60.005 52.632 0.00 0.00 45.19 4.93
2442 2560 0.108615 CTCGATGAGACCAAACCGCT 60.109 55.000 0.00 0.00 0.00 5.52
2455 2573 5.568482 TCAAAGTTTCAAACACACTCGATG 58.432 37.500 2.41 0.00 0.00 3.84
2460 2581 6.279513 TCCATTCAAAGTTTCAAACACACT 57.720 33.333 2.41 0.00 0.00 3.55
2461 2582 7.538303 AATCCATTCAAAGTTTCAAACACAC 57.462 32.000 2.41 0.00 0.00 3.82
2528 2669 7.158021 TCTTGGCCCTTTGTGTAATTAAAATG 58.842 34.615 0.00 0.00 0.00 2.32
2529 2670 7.309770 TCTTGGCCCTTTGTGTAATTAAAAT 57.690 32.000 0.00 0.00 0.00 1.82
2587 2733 6.690530 TCCCACTTGCTTTTAGATGAAAATG 58.309 36.000 0.00 0.00 36.44 2.32
2632 2784 6.902224 TCAACATCACAATACCGTTGATAG 57.098 37.500 0.00 0.00 40.60 2.08
2640 2792 6.741992 TCACTTCATCAACATCACAATACC 57.258 37.500 0.00 0.00 0.00 2.73
2646 2801 4.142315 CCCCATTCACTTCATCAACATCAC 60.142 45.833 0.00 0.00 0.00 3.06
2682 2837 8.154649 AGTCAAAGTTAGTGACATGTTTAAGG 57.845 34.615 0.00 0.00 46.44 2.69
2709 2864 5.330233 TGTGGACCAGACAGAACTCTATAA 58.670 41.667 0.00 0.00 0.00 0.98
2747 2902 4.811557 CCCGGAGAATCTTGATTTGTAGAC 59.188 45.833 0.73 0.00 33.73 2.59
2848 3016 3.385111 TGGGCCAAACGAAAACTGTTTAT 59.615 39.130 2.13 0.00 37.44 1.40
2849 3017 2.758979 TGGGCCAAACGAAAACTGTTTA 59.241 40.909 2.13 0.00 37.44 2.01
2858 3026 2.490115 GTGACATTATGGGCCAAACGAA 59.510 45.455 11.89 2.84 0.00 3.85
2860 3028 1.134175 GGTGACATTATGGGCCAAACG 59.866 52.381 11.89 1.66 0.00 3.60
2900 3069 1.532794 GTTGGGCCATGTGTGGGAA 60.533 57.895 7.26 0.00 46.14 3.97
2930 3099 4.885270 TGGTGCGTTGTGGGGTGG 62.885 66.667 0.00 0.00 0.00 4.61
2938 3107 4.033817 ACACAAAAATGAAATGGTGCGTTG 59.966 37.500 0.00 0.00 0.00 4.10
2947 3116 5.454613 GGAGGGTCCAACACAAAAATGAAAT 60.455 40.000 0.00 0.00 36.28 2.17
2950 3119 2.962421 GGAGGGTCCAACACAAAAATGA 59.038 45.455 0.00 0.00 36.28 2.57
2959 3128 0.840722 GAGAAGGGGAGGGTCCAACA 60.841 60.000 0.00 0.00 38.64 3.33
2962 3131 2.038975 CGAGAAGGGGAGGGTCCA 59.961 66.667 0.00 0.00 38.64 4.02
2983 3152 2.025418 CCCGCTACGACGCAAAACT 61.025 57.895 0.00 0.00 0.00 2.66
2989 3158 1.749609 GAAATGTCCCGCTACGACGC 61.750 60.000 0.00 0.00 32.68 5.19
2999 3168 4.262617 GAGGTTCCAACTAGAAATGTCCC 58.737 47.826 0.00 0.00 0.00 4.46
3010 3179 5.138276 GTTTTAAAGGAGGAGGTTCCAACT 58.862 41.667 0.00 0.00 39.61 3.16
3017 3186 3.981375 AGTCTGGTTTTAAAGGAGGAGGT 59.019 43.478 0.00 0.00 0.00 3.85
3019 3188 6.607004 TCTAGTCTGGTTTTAAAGGAGGAG 57.393 41.667 0.00 0.00 0.00 3.69
3037 3206 2.196749 CGCGCATCTTGATGTTCTAGT 58.803 47.619 8.75 0.00 0.00 2.57
3038 3207 2.196749 ACGCGCATCTTGATGTTCTAG 58.803 47.619 5.73 0.00 0.00 2.43
3039 3208 2.293677 ACGCGCATCTTGATGTTCTA 57.706 45.000 5.73 0.00 0.00 2.10
3040 3209 1.129251 CAACGCGCATCTTGATGTTCT 59.871 47.619 5.73 0.00 0.00 3.01
3041 3210 1.527696 CAACGCGCATCTTGATGTTC 58.472 50.000 5.73 4.05 0.00 3.18
3042 3211 0.454957 GCAACGCGCATCTTGATGTT 60.455 50.000 5.73 0.00 41.79 2.71
3043 3212 1.135315 GCAACGCGCATCTTGATGT 59.865 52.632 5.73 0.00 41.79 3.06
3044 3213 1.584483 GGCAACGCGCATCTTGATG 60.584 57.895 5.73 6.27 45.17 3.07
3045 3214 2.793946 GGCAACGCGCATCTTGAT 59.206 55.556 5.73 0.00 45.17 2.57
3064 3233 4.812476 TCGTCAAGATGGCGGGCG 62.812 66.667 4.40 0.00 46.79 6.13
3065 3234 2.435938 TTCGTCAAGATGGCGGGC 60.436 61.111 4.40 0.00 46.79 6.13
3066 3235 1.815421 CCTTCGTCAAGATGGCGGG 60.815 63.158 4.40 0.00 46.79 6.13
3067 3236 0.391130 TTCCTTCGTCAAGATGGCGG 60.391 55.000 4.40 0.00 46.79 6.13
3069 3238 4.380531 TGATATTCCTTCGTCAAGATGGC 58.619 43.478 0.00 0.00 42.25 4.40
3070 3239 6.283694 TCTTGATATTCCTTCGTCAAGATGG 58.716 40.000 11.39 0.00 46.80 3.51
3074 3243 6.968131 TTGTCTTGATATTCCTTCGTCAAG 57.032 37.500 7.45 7.45 45.47 3.02
3101 3270 8.659527 ACCTTCCATTTCTTTTCACCAATATTT 58.340 29.630 0.00 0.00 0.00 1.40
3102 3271 8.206126 ACCTTCCATTTCTTTTCACCAATATT 57.794 30.769 0.00 0.00 0.00 1.28
3103 3272 7.797121 ACCTTCCATTTCTTTTCACCAATAT 57.203 32.000 0.00 0.00 0.00 1.28
3104 3273 8.893563 ATACCTTCCATTTCTTTTCACCAATA 57.106 30.769 0.00 0.00 0.00 1.90
3105 3274 7.797121 ATACCTTCCATTTCTTTTCACCAAT 57.203 32.000 0.00 0.00 0.00 3.16
3106 3275 8.713708 TTATACCTTCCATTTCTTTTCACCAA 57.286 30.769 0.00 0.00 0.00 3.67
3107 3276 8.893563 ATTATACCTTCCATTTCTTTTCACCA 57.106 30.769 0.00 0.00 0.00 4.17
3131 3300 9.479549 ACTGTAATTCAAATCTCCATTGGTAAT 57.520 29.630 1.86 0.00 0.00 1.89
3132 3301 8.877864 ACTGTAATTCAAATCTCCATTGGTAA 57.122 30.769 1.86 0.00 0.00 2.85
3133 3302 9.391006 GTACTGTAATTCAAATCTCCATTGGTA 57.609 33.333 1.86 0.00 0.00 3.25
3134 3303 7.339466 GGTACTGTAATTCAAATCTCCATTGGT 59.661 37.037 1.86 0.00 0.00 3.67
3135 3304 7.557719 AGGTACTGTAATTCAAATCTCCATTGG 59.442 37.037 0.00 0.00 37.18 3.16
3136 3305 8.511604 AGGTACTGTAATTCAAATCTCCATTG 57.488 34.615 0.00 0.00 37.18 2.82
3138 3307 9.838339 CTAAGGTACTGTAATTCAAATCTCCAT 57.162 33.333 0.00 0.00 40.86 3.41
3139 3308 8.822805 ACTAAGGTACTGTAATTCAAATCTCCA 58.177 33.333 0.00 0.00 40.86 3.86
3140 3309 9.668497 AACTAAGGTACTGTAATTCAAATCTCC 57.332 33.333 0.00 0.00 40.86 3.71
3147 3316 9.701098 CACTACAAACTAAGGTACTGTAATTCA 57.299 33.333 0.00 0.00 40.86 2.57
3148 3317 9.148104 CCACTACAAACTAAGGTACTGTAATTC 57.852 37.037 0.00 0.00 40.86 2.17
3149 3318 8.098912 CCCACTACAAACTAAGGTACTGTAATT 58.901 37.037 0.00 0.00 40.86 1.40
3150 3319 7.310858 CCCCACTACAAACTAAGGTACTGTAAT 60.311 40.741 0.00 0.00 40.86 1.89
3151 3320 6.014327 CCCCACTACAAACTAAGGTACTGTAA 60.014 42.308 0.00 0.00 40.86 2.41
3152 3321 5.481473 CCCCACTACAAACTAAGGTACTGTA 59.519 44.000 0.00 0.00 40.86 2.74
3153 3322 4.285260 CCCCACTACAAACTAAGGTACTGT 59.715 45.833 0.00 0.00 40.86 3.55
3154 3323 4.529377 TCCCCACTACAAACTAAGGTACTG 59.471 45.833 0.00 0.00 40.86 2.74
3155 3324 6.469239 TAGTCCCCACTACAAACTAAGGTACT 60.469 42.308 0.00 0.00 34.85 2.73
3156 3325 4.529769 AGTCCCCACTACAAACTAAGGTAC 59.470 45.833 0.00 0.00 0.00 3.34
3157 3326 4.755437 AGTCCCCACTACAAACTAAGGTA 58.245 43.478 0.00 0.00 0.00 3.08
3158 3327 3.595021 AGTCCCCACTACAAACTAAGGT 58.405 45.455 0.00 0.00 0.00 3.50
3169 3338 6.604171 TCTAAATGTATCGTAGTCCCCACTA 58.396 40.000 0.00 0.00 33.62 2.74
3170 3339 5.452255 TCTAAATGTATCGTAGTCCCCACT 58.548 41.667 0.00 0.00 36.55 4.00
3171 3340 5.779529 TCTAAATGTATCGTAGTCCCCAC 57.220 43.478 0.00 0.00 0.00 4.61
3172 3341 6.989155 ATTCTAAATGTATCGTAGTCCCCA 57.011 37.500 0.00 0.00 0.00 4.96
3173 3342 9.939802 AATTATTCTAAATGTATCGTAGTCCCC 57.060 33.333 0.00 0.00 0.00 4.81
3197 3366 9.487442 TGTTTAAATTGGCCCTTCTATAAGAAT 57.513 29.630 0.00 0.00 33.13 2.40
3198 3367 8.887264 TGTTTAAATTGGCCCTTCTATAAGAA 57.113 30.769 0.00 0.00 34.37 2.52
3199 3368 8.745590 GTTGTTTAAATTGGCCCTTCTATAAGA 58.254 33.333 0.00 0.00 34.37 2.10
3200 3369 7.979537 GGTTGTTTAAATTGGCCCTTCTATAAG 59.020 37.037 0.00 0.00 0.00 1.73
3201 3370 7.093245 GGGTTGTTTAAATTGGCCCTTCTATAA 60.093 37.037 0.00 0.00 0.00 0.98
3202 3371 6.381707 GGGTTGTTTAAATTGGCCCTTCTATA 59.618 38.462 0.00 0.00 0.00 1.31
3203 3372 5.188948 GGGTTGTTTAAATTGGCCCTTCTAT 59.811 40.000 0.00 0.00 0.00 1.98
3204 3373 4.528987 GGGTTGTTTAAATTGGCCCTTCTA 59.471 41.667 0.00 0.00 0.00 2.10
3205 3374 3.326588 GGGTTGTTTAAATTGGCCCTTCT 59.673 43.478 0.00 0.00 0.00 2.85
3206 3375 3.326588 AGGGTTGTTTAAATTGGCCCTTC 59.673 43.478 0.00 0.00 41.84 3.46
3207 3376 3.322862 AGGGTTGTTTAAATTGGCCCTT 58.677 40.909 0.00 0.00 41.84 3.95
3208 3377 2.903784 GAGGGTTGTTTAAATTGGCCCT 59.096 45.455 17.07 17.07 46.65 5.19
3209 3378 2.635427 TGAGGGTTGTTTAAATTGGCCC 59.365 45.455 0.00 10.32 35.04 5.80
3210 3379 4.344359 TTGAGGGTTGTTTAAATTGGCC 57.656 40.909 0.00 0.00 0.00 5.36
3211 3380 8.040727 AGATATTTGAGGGTTGTTTAAATTGGC 58.959 33.333 0.00 0.00 0.00 4.52
3212 3381 9.942850 AAGATATTTGAGGGTTGTTTAAATTGG 57.057 29.630 0.00 0.00 0.00 3.16
3215 3384 9.435688 GCAAAGATATTTGAGGGTTGTTTAAAT 57.564 29.630 16.76 0.00 33.95 1.40
3216 3385 8.424918 TGCAAAGATATTTGAGGGTTGTTTAAA 58.575 29.630 16.76 0.00 33.95 1.52
3217 3386 7.957002 TGCAAAGATATTTGAGGGTTGTTTAA 58.043 30.769 16.76 0.00 33.95 1.52
3218 3387 7.531857 TGCAAAGATATTTGAGGGTTGTTTA 57.468 32.000 16.76 0.00 33.95 2.01
3219 3388 6.418057 TGCAAAGATATTTGAGGGTTGTTT 57.582 33.333 16.76 0.00 33.95 2.83
3220 3389 6.610075 ATGCAAAGATATTTGAGGGTTGTT 57.390 33.333 16.76 0.00 33.95 2.83
3221 3390 7.397192 ACTTATGCAAAGATATTTGAGGGTTGT 59.603 33.333 16.76 4.85 33.95 3.32
3222 3391 7.775120 ACTTATGCAAAGATATTTGAGGGTTG 58.225 34.615 16.76 4.29 33.95 3.77
3223 3392 7.068716 GGACTTATGCAAAGATATTTGAGGGTT 59.931 37.037 16.76 0.00 33.95 4.11
3224 3393 6.547510 GGACTTATGCAAAGATATTTGAGGGT 59.452 38.462 16.76 6.94 33.95 4.34
3225 3394 6.774656 AGGACTTATGCAAAGATATTTGAGGG 59.225 38.462 16.76 4.12 33.95 4.30
3226 3395 7.500227 TGAGGACTTATGCAAAGATATTTGAGG 59.500 37.037 16.76 0.00 33.95 3.86
3227 3396 8.442632 TGAGGACTTATGCAAAGATATTTGAG 57.557 34.615 16.76 7.26 33.95 3.02
3228 3397 7.012704 GCTGAGGACTTATGCAAAGATATTTGA 59.987 37.037 16.76 2.61 33.95 2.69
3229 3398 7.137426 GCTGAGGACTTATGCAAAGATATTTG 58.863 38.462 8.46 8.46 35.15 2.32
3230 3399 6.264067 GGCTGAGGACTTATGCAAAGATATTT 59.736 38.462 13.35 0.00 0.00 1.40
3231 3400 5.767168 GGCTGAGGACTTATGCAAAGATATT 59.233 40.000 13.35 0.00 0.00 1.28
3232 3401 5.312079 GGCTGAGGACTTATGCAAAGATAT 58.688 41.667 13.35 1.78 0.00 1.63
3233 3402 4.444876 GGGCTGAGGACTTATGCAAAGATA 60.445 45.833 13.35 0.00 0.00 1.98
3234 3403 3.549794 GGCTGAGGACTTATGCAAAGAT 58.450 45.455 13.35 2.31 0.00 2.40
3235 3404 2.356125 GGGCTGAGGACTTATGCAAAGA 60.356 50.000 13.35 0.00 0.00 2.52
3236 3405 2.019984 GGGCTGAGGACTTATGCAAAG 58.980 52.381 0.00 0.00 0.00 2.77
3237 3406 1.354031 TGGGCTGAGGACTTATGCAAA 59.646 47.619 0.00 0.00 0.00 3.68
3238 3407 0.991146 TGGGCTGAGGACTTATGCAA 59.009 50.000 0.00 0.00 0.00 4.08
3239 3408 0.253044 GTGGGCTGAGGACTTATGCA 59.747 55.000 0.00 0.00 0.00 3.96
3240 3409 0.253044 TGTGGGCTGAGGACTTATGC 59.747 55.000 0.00 0.00 0.00 3.14
3241 3410 2.171237 TCATGTGGGCTGAGGACTTATG 59.829 50.000 0.00 0.00 0.00 1.90
3242 3411 2.481441 TCATGTGGGCTGAGGACTTAT 58.519 47.619 0.00 0.00 0.00 1.73
3243 3412 1.951209 TCATGTGGGCTGAGGACTTA 58.049 50.000 0.00 0.00 0.00 2.24
3244 3413 1.067295 TTCATGTGGGCTGAGGACTT 58.933 50.000 0.00 0.00 0.00 3.01
3245 3414 1.067295 TTTCATGTGGGCTGAGGACT 58.933 50.000 0.00 0.00 0.00 3.85
3246 3415 2.134789 ATTTCATGTGGGCTGAGGAC 57.865 50.000 0.00 0.00 0.00 3.85
3247 3416 2.905415 AATTTCATGTGGGCTGAGGA 57.095 45.000 0.00 0.00 0.00 3.71
3248 3417 3.967332 AAAATTTCATGTGGGCTGAGG 57.033 42.857 0.00 0.00 0.00 3.86
3249 3418 9.252962 GATTTATAAAATTTCATGTGGGCTGAG 57.747 33.333 1.21 0.00 0.00 3.35
3250 3419 8.756927 TGATTTATAAAATTTCATGTGGGCTGA 58.243 29.630 1.21 0.00 0.00 4.26
3251 3420 8.945481 TGATTTATAAAATTTCATGTGGGCTG 57.055 30.769 1.21 0.00 0.00 4.85
3269 3438 9.991906 CCTCTTATGGATTTGCAAATGATTTAT 57.008 29.630 28.67 15.95 0.00 1.40
3270 3439 9.199645 TCCTCTTATGGATTTGCAAATGATTTA 57.800 29.630 28.67 11.88 0.00 1.40
3271 3440 7.983484 GTCCTCTTATGGATTTGCAAATGATTT 59.017 33.333 28.67 12.80 38.52 2.17
3272 3441 7.124599 TGTCCTCTTATGGATTTGCAAATGATT 59.875 33.333 28.67 14.44 38.52 2.57
3273 3442 6.608405 TGTCCTCTTATGGATTTGCAAATGAT 59.392 34.615 28.67 20.39 38.52 2.45
3274 3443 5.951148 TGTCCTCTTATGGATTTGCAAATGA 59.049 36.000 28.67 16.59 38.52 2.57
3275 3444 6.211587 TGTCCTCTTATGGATTTGCAAATG 57.788 37.500 28.67 13.28 38.52 2.32
3276 3445 8.582437 CATATGTCCTCTTATGGATTTGCAAAT 58.418 33.333 24.33 24.33 38.52 2.32
3277 3446 7.779326 TCATATGTCCTCTTATGGATTTGCAAA 59.221 33.333 15.44 15.44 38.52 3.68
3278 3447 7.229306 GTCATATGTCCTCTTATGGATTTGCAA 59.771 37.037 1.90 0.00 38.52 4.08
3279 3448 6.712095 GTCATATGTCCTCTTATGGATTTGCA 59.288 38.462 1.90 0.00 38.52 4.08
3280 3449 6.939163 AGTCATATGTCCTCTTATGGATTTGC 59.061 38.462 1.90 0.00 38.52 3.68
3285 3454 9.480861 CCTTATAGTCATATGTCCTCTTATGGA 57.519 37.037 1.90 0.00 34.50 3.41
3286 3455 9.480861 TCCTTATAGTCATATGTCCTCTTATGG 57.519 37.037 1.90 7.64 34.50 2.74
3290 3459 9.523168 GTACTCCTTATAGTCATATGTCCTCTT 57.477 37.037 1.90 0.00 0.00 2.85
3291 3460 8.670490 TGTACTCCTTATAGTCATATGTCCTCT 58.330 37.037 1.90 0.98 0.00 3.69
3292 3461 8.865420 TGTACTCCTTATAGTCATATGTCCTC 57.135 38.462 1.90 0.00 0.00 3.71
3293 3462 9.830186 AATGTACTCCTTATAGTCATATGTCCT 57.170 33.333 1.90 3.00 0.00 3.85
3325 3494 9.875675 GCAACTAATTATCTCTCATTGTCAATC 57.124 33.333 0.00 0.00 0.00 2.67
3326 3495 9.399797 TGCAACTAATTATCTCTCATTGTCAAT 57.600 29.630 0.00 0.00 0.00 2.57
3327 3496 8.791327 TGCAACTAATTATCTCTCATTGTCAA 57.209 30.769 0.00 0.00 0.00 3.18
3328 3497 8.791327 TTGCAACTAATTATCTCTCATTGTCA 57.209 30.769 0.00 0.00 0.00 3.58
3361 3530 8.400947 GCGGCACAAATCATAATTATATCTCAT 58.599 33.333 0.00 0.00 0.00 2.90
3362 3531 7.412891 CGCGGCACAAATCATAATTATATCTCA 60.413 37.037 0.00 0.00 0.00 3.27
3363 3532 6.901887 CGCGGCACAAATCATAATTATATCTC 59.098 38.462 0.00 0.00 0.00 2.75
3364 3533 6.593770 TCGCGGCACAAATCATAATTATATCT 59.406 34.615 6.13 0.00 0.00 1.98
3365 3534 6.771076 TCGCGGCACAAATCATAATTATATC 58.229 36.000 6.13 0.00 0.00 1.63
3366 3535 6.735678 TCGCGGCACAAATCATAATTATAT 57.264 33.333 6.13 0.00 0.00 0.86
3367 3536 6.203915 ACTTCGCGGCACAAATCATAATTATA 59.796 34.615 6.13 0.00 0.00 0.98
3368 3537 5.008613 ACTTCGCGGCACAAATCATAATTAT 59.991 36.000 6.13 0.00 0.00 1.28
3369 3538 4.334203 ACTTCGCGGCACAAATCATAATTA 59.666 37.500 6.13 0.00 0.00 1.40
3370 3539 3.128589 ACTTCGCGGCACAAATCATAATT 59.871 39.130 6.13 0.00 0.00 1.40
3371 3540 2.682856 ACTTCGCGGCACAAATCATAAT 59.317 40.909 6.13 0.00 0.00 1.28
3372 3541 2.080693 ACTTCGCGGCACAAATCATAA 58.919 42.857 6.13 0.00 0.00 1.90
3373 3542 1.732941 ACTTCGCGGCACAAATCATA 58.267 45.000 6.13 0.00 0.00 2.15
3374 3543 1.396996 GTACTTCGCGGCACAAATCAT 59.603 47.619 6.13 0.00 0.00 2.45
3375 3544 0.793861 GTACTTCGCGGCACAAATCA 59.206 50.000 6.13 0.00 0.00 2.57
3376 3545 0.793861 TGTACTTCGCGGCACAAATC 59.206 50.000 6.13 0.00 0.00 2.17
3377 3546 0.796312 CTGTACTTCGCGGCACAAAT 59.204 50.000 6.13 0.00 0.00 2.32
3378 3547 0.249531 TCTGTACTTCGCGGCACAAA 60.250 50.000 6.13 0.00 0.00 2.83
3379 3548 0.249531 TTCTGTACTTCGCGGCACAA 60.250 50.000 6.13 0.00 0.00 3.33
3380 3549 0.249531 TTTCTGTACTTCGCGGCACA 60.250 50.000 6.13 4.54 0.00 4.57
3381 3550 1.076332 ATTTCTGTACTTCGCGGCAC 58.924 50.000 6.13 0.00 0.00 5.01
3382 3551 1.075542 CATTTCTGTACTTCGCGGCA 58.924 50.000 6.13 0.00 0.00 5.69
3383 3552 1.060698 GTCATTTCTGTACTTCGCGGC 59.939 52.381 6.13 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.