Multiple sequence alignment - TraesCS2A01G408500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G408500 chr2A 100.000 1416 0 0 1641 3056 665990560 665989145 0.000000e+00 2615.0
1 TraesCS2A01G408500 chr2A 100.000 1340 0 0 1 1340 665992200 665990861 0.000000e+00 2475.0
2 TraesCS2A01G408500 chr2A 92.939 1218 40 10 1754 2957 665843431 665842246 0.000000e+00 1731.0
3 TraesCS2A01G408500 chr2A 85.714 931 84 24 363 1258 665844953 665844037 0.000000e+00 937.0
4 TraesCS2A01G408500 chr2A 96.210 343 12 1 2 343 665954143 665953801 7.400000e-156 560.0
5 TraesCS2A01G408500 chr2A 87.109 256 27 6 1 253 605351542 605351794 4.990000e-73 285.0
6 TraesCS2A01G408500 chr2A 98.214 112 2 0 2945 3056 665841014 665840903 2.400000e-46 196.0
7 TraesCS2A01G408500 chr2B 88.571 910 66 17 462 1338 613038232 613037328 0.000000e+00 1070.0
8 TraesCS2A01G408500 chr2B 89.365 630 39 13 1777 2398 613036890 613036281 0.000000e+00 767.0
9 TraesCS2A01G408500 chr2B 82.721 272 24 7 1 250 475249231 475248961 1.430000e-53 220.0
10 TraesCS2A01G408500 chr2B 90.833 120 11 0 2872 2991 613035387 613035268 8.770000e-36 161.0
11 TraesCS2A01G408500 chr2B 96.721 61 2 0 375 435 613038294 613038234 5.390000e-18 102.0
12 TraesCS2A01G408500 chr2D 90.411 730 40 17 1655 2376 520583235 520582528 0.000000e+00 933.0
13 TraesCS2A01G408500 chr2D 86.790 651 45 14 724 1338 520583831 520583186 0.000000e+00 688.0
14 TraesCS2A01G408500 chr2D 81.471 367 29 14 375 727 520584201 520583860 6.500000e-67 265.0
15 TraesCS2A01G408500 chr6A 89.175 582 45 14 1655 2222 107701180 107700603 0.000000e+00 710.0
16 TraesCS2A01G408500 chr6A 92.471 425 32 0 1655 2079 107692661 107692237 2.610000e-170 608.0
17 TraesCS2A01G408500 chr6A 90.452 398 33 5 943 1338 107692778 107692384 1.260000e-143 520.0
18 TraesCS2A01G408500 chr6A 89.724 399 34 7 943 1338 107701297 107700903 1.260000e-138 503.0
19 TraesCS2A01G408500 chr6A 87.990 408 48 1 933 1340 91423645 91424051 5.930000e-132 481.0
20 TraesCS2A01G408500 chr6B 92.274 453 31 3 1651 2099 149055469 149055921 9.240000e-180 640.0
21 TraesCS2A01G408500 chr6B 85.691 615 71 14 1647 2247 171768589 171767978 1.550000e-177 632.0
22 TraesCS2A01G408500 chr6B 91.898 432 35 0 1641 2072 171971982 171971551 3.370000e-169 604.0
23 TraesCS2A01G408500 chr6B 91.116 439 39 0 1641 2079 171728186 171727748 2.030000e-166 595.0
24 TraesCS2A01G408500 chr6B 90.769 390 35 1 949 1338 171972079 171971691 1.260000e-143 520.0
25 TraesCS2A01G408500 chr6B 87.745 408 45 5 933 1338 149055118 149055522 3.570000e-129 472.0
26 TraesCS2A01G408500 chr6B 85.177 452 64 3 861 1311 139894674 139894225 7.720000e-126 460.0
27 TraesCS2A01G408500 chr7B 91.165 249 22 0 2 250 130126746 130126498 3.770000e-89 339.0
28 TraesCS2A01G408500 chr7B 91.165 249 21 1 2 250 130132755 130132508 1.360000e-88 337.0
29 TraesCS2A01G408500 chr7B 90.763 249 23 0 2 250 130188233 130187985 1.760000e-87 333.0
30 TraesCS2A01G408500 chr7B 88.400 250 29 0 2 251 130186494 130186245 4.950000e-78 302.0
31 TraesCS2A01G408500 chr7B 81.481 135 12 4 2897 3023 293080927 293081056 6.970000e-17 99.0
32 TraesCS2A01G408500 chr5A 84.348 230 27 8 2 227 526533220 526533444 1.850000e-52 217.0
33 TraesCS2A01G408500 chr5A 86.207 145 16 3 2731 2871 60524664 60524808 1.470000e-33 154.0
34 TraesCS2A01G408500 chr5A 85.517 145 19 1 2731 2873 599654124 599654268 1.900000e-32 150.0
35 TraesCS2A01G408500 chr5B 82.627 236 30 8 20 250 530920829 530921058 6.680000e-47 198.0
36 TraesCS2A01G408500 chr5B 75.281 267 30 17 2775 3023 16920966 16920718 9.020000e-16 95.3
37 TraesCS2A01G408500 chr5B 75.281 267 30 17 2775 3023 17224095 17223847 9.020000e-16 95.3
38 TraesCS2A01G408500 chr5B 75.720 243 28 14 2775 2999 16853077 16852848 3.240000e-15 93.5
39 TraesCS2A01G408500 chr5B 75.720 243 28 14 2775 2999 17154179 17153950 3.240000e-15 93.5
40 TraesCS2A01G408500 chr4B 82.090 134 11 7 2898 3023 374111133 374111261 5.390000e-18 102.0
41 TraesCS2A01G408500 chr1D 85.057 87 5 2 2564 2642 436969027 436968941 7.020000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G408500 chr2A 665989145 665992200 3055 True 2545.000000 2615 100.0000 1 3056 2 chr2A.!!$R3 3055
1 TraesCS2A01G408500 chr2A 665840903 665844953 4050 True 954.666667 1731 92.2890 363 3056 3 chr2A.!!$R2 2693
2 TraesCS2A01G408500 chr2B 613035268 613038294 3026 True 525.000000 1070 91.3725 375 2991 4 chr2B.!!$R2 2616
3 TraesCS2A01G408500 chr2D 520582528 520584201 1673 True 628.666667 933 86.2240 375 2376 3 chr2D.!!$R1 2001
4 TraesCS2A01G408500 chr6A 107700603 107701297 694 True 606.500000 710 89.4495 943 2222 2 chr6A.!!$R2 1279
5 TraesCS2A01G408500 chr6A 107692237 107692778 541 True 564.000000 608 91.4615 943 2079 2 chr6A.!!$R1 1136
6 TraesCS2A01G408500 chr6B 171767978 171768589 611 True 632.000000 632 85.6910 1647 2247 1 chr6B.!!$R3 600
7 TraesCS2A01G408500 chr6B 171971551 171972079 528 True 562.000000 604 91.3335 949 2072 2 chr6B.!!$R4 1123
8 TraesCS2A01G408500 chr6B 149055118 149055921 803 False 556.000000 640 90.0095 933 2099 2 chr6B.!!$F1 1166
9 TraesCS2A01G408500 chr7B 130186245 130188233 1988 True 317.500000 333 89.5815 2 251 2 chr7B.!!$R3 249

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.106819 ACAGATGGAGAAGGGCATGC 60.107 55.0 9.90 9.9 0.0 4.06 F
1239 1343 0.106318 GGGGAGGCATGCAGATCTTT 60.106 55.0 21.36 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 1746 0.247736 ATGGTGTCGGAGCTCTCAAC 59.752 55.000 14.64 13.38 0.0 3.18 R
2087 3958 1.202486 ACAGACACAACGAACGACCAT 60.202 47.619 0.14 0.00 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.835113 ACTGCCATGTTGTTGTATATTCC 57.165 39.130 0.00 0.00 0.00 3.01
32 33 4.644685 ACTGCCATGTTGTTGTATATTCCC 59.355 41.667 0.00 0.00 0.00 3.97
34 35 4.887071 TGCCATGTTGTTGTATATTCCCTC 59.113 41.667 0.00 0.00 0.00 4.30
72 73 5.766174 TCGTTCCATAGGCTTTTGTAAAAGT 59.234 36.000 16.02 3.13 45.48 2.66
78 79 6.015434 CCATAGGCTTTTGTAAAAGTGAAGGT 60.015 38.462 16.02 1.65 45.48 3.50
79 80 5.262588 AGGCTTTTGTAAAAGTGAAGGTG 57.737 39.130 16.02 0.00 45.48 4.00
81 82 5.186992 AGGCTTTTGTAAAAGTGAAGGTGTT 59.813 36.000 16.02 0.00 45.48 3.32
112 113 4.682859 GCACATCAAGATAGAAGCTCACCT 60.683 45.833 0.00 0.00 0.00 4.00
116 117 4.604156 TCAAGATAGAAGCTCACCTCTCA 58.396 43.478 0.00 0.00 0.00 3.27
117 118 4.644234 TCAAGATAGAAGCTCACCTCTCAG 59.356 45.833 0.00 0.00 0.00 3.35
118 119 3.565307 AGATAGAAGCTCACCTCTCAGG 58.435 50.000 0.00 0.00 42.49 3.86
127 128 2.914289 CCTCTCAGGTCCATGGCC 59.086 66.667 6.96 12.06 0.00 5.36
128 129 1.692042 CCTCTCAGGTCCATGGCCT 60.692 63.158 18.75 18.75 36.66 5.19
129 130 1.694133 CCTCTCAGGTCCATGGCCTC 61.694 65.000 20.88 8.43 33.31 4.70
130 131 1.690633 TCTCAGGTCCATGGCCTCC 60.691 63.158 20.88 15.85 33.31 4.30
131 132 1.997311 CTCAGGTCCATGGCCTCCA 60.997 63.158 20.88 11.94 38.19 3.86
132 133 1.541118 TCAGGTCCATGGCCTCCAA 60.541 57.895 20.88 9.88 36.95 3.53
133 134 1.139498 TCAGGTCCATGGCCTCCAAA 61.139 55.000 20.88 7.91 36.95 3.28
134 135 0.251742 CAGGTCCATGGCCTCCAAAA 60.252 55.000 20.88 0.00 36.95 2.44
135 136 0.712380 AGGTCCATGGCCTCCAAAAT 59.288 50.000 18.75 0.00 36.95 1.82
136 137 0.826062 GGTCCATGGCCTCCAAAATG 59.174 55.000 6.96 0.00 36.95 2.32
137 138 0.826062 GTCCATGGCCTCCAAAATGG 59.174 55.000 6.96 10.61 36.95 3.16
138 139 0.325484 TCCATGGCCTCCAAAATGGG 60.325 55.000 15.55 0.63 38.32 4.00
139 140 1.339644 CCATGGCCTCCAAAATGGGG 61.340 60.000 3.32 0.00 37.90 4.96
147 148 2.750814 CTCCAAAATGGGGGCAATAGT 58.249 47.619 0.00 0.00 38.32 2.12
148 149 3.106827 CTCCAAAATGGGGGCAATAGTT 58.893 45.455 0.00 0.00 38.32 2.24
149 150 2.836981 TCCAAAATGGGGGCAATAGTTG 59.163 45.455 0.00 0.00 38.32 3.16
150 151 2.571202 CCAAAATGGGGGCAATAGTTGT 59.429 45.455 0.00 0.00 32.67 3.32
151 152 3.598299 CAAAATGGGGGCAATAGTTGTG 58.402 45.455 0.00 0.00 0.00 3.33
152 153 1.864669 AATGGGGGCAATAGTTGTGG 58.135 50.000 0.00 0.00 0.00 4.17
153 154 0.687427 ATGGGGGCAATAGTTGTGGC 60.687 55.000 0.00 0.00 40.67 5.01
154 155 1.304879 GGGGGCAATAGTTGTGGCA 60.305 57.895 0.27 0.00 43.06 4.92
155 156 0.902516 GGGGGCAATAGTTGTGGCAA 60.903 55.000 0.00 0.00 43.06 4.52
156 157 1.194218 GGGGCAATAGTTGTGGCAAT 58.806 50.000 0.00 0.00 43.06 3.56
157 158 1.134729 GGGGCAATAGTTGTGGCAATG 60.135 52.381 0.00 0.00 43.06 2.82
158 159 1.134729 GGGCAATAGTTGTGGCAATGG 60.135 52.381 0.00 0.00 43.06 3.16
159 160 1.824230 GGCAATAGTTGTGGCAATGGA 59.176 47.619 0.00 0.00 41.05 3.41
160 161 2.159198 GGCAATAGTTGTGGCAATGGAG 60.159 50.000 0.00 0.00 41.05 3.86
161 162 2.159198 GCAATAGTTGTGGCAATGGAGG 60.159 50.000 0.00 0.00 0.00 4.30
162 163 3.355378 CAATAGTTGTGGCAATGGAGGA 58.645 45.455 0.00 0.00 0.00 3.71
163 164 2.787473 TAGTTGTGGCAATGGAGGAG 57.213 50.000 0.00 0.00 0.00 3.69
164 165 1.067295 AGTTGTGGCAATGGAGGAGA 58.933 50.000 0.00 0.00 0.00 3.71
165 166 1.004044 AGTTGTGGCAATGGAGGAGAG 59.996 52.381 0.00 0.00 0.00 3.20
166 167 0.329261 TTGTGGCAATGGAGGAGAGG 59.671 55.000 0.00 0.00 0.00 3.69
167 168 0.547471 TGTGGCAATGGAGGAGAGGA 60.547 55.000 0.00 0.00 0.00 3.71
168 169 0.107459 GTGGCAATGGAGGAGAGGAC 60.107 60.000 0.00 0.00 0.00 3.85
169 170 0.547471 TGGCAATGGAGGAGAGGACA 60.547 55.000 0.00 0.00 0.00 4.02
170 171 0.179936 GGCAATGGAGGAGAGGACAG 59.820 60.000 0.00 0.00 0.00 3.51
171 172 1.198713 GCAATGGAGGAGAGGACAGA 58.801 55.000 0.00 0.00 0.00 3.41
172 173 1.767681 GCAATGGAGGAGAGGACAGAT 59.232 52.381 0.00 0.00 0.00 2.90
173 174 2.485124 GCAATGGAGGAGAGGACAGATG 60.485 54.545 0.00 0.00 0.00 2.90
174 175 2.100128 ATGGAGGAGAGGACAGATGG 57.900 55.000 0.00 0.00 0.00 3.51
175 176 1.010795 TGGAGGAGAGGACAGATGGA 58.989 55.000 0.00 0.00 0.00 3.41
176 177 1.063341 TGGAGGAGAGGACAGATGGAG 60.063 57.143 0.00 0.00 0.00 3.86
177 178 1.216678 GGAGGAGAGGACAGATGGAGA 59.783 57.143 0.00 0.00 0.00 3.71
178 179 2.358721 GGAGGAGAGGACAGATGGAGAA 60.359 54.545 0.00 0.00 0.00 2.87
179 180 2.958355 GAGGAGAGGACAGATGGAGAAG 59.042 54.545 0.00 0.00 0.00 2.85
180 181 2.038659 GGAGAGGACAGATGGAGAAGG 58.961 57.143 0.00 0.00 0.00 3.46
181 182 2.038659 GAGAGGACAGATGGAGAAGGG 58.961 57.143 0.00 0.00 0.00 3.95
182 183 0.467804 GAGGACAGATGGAGAAGGGC 59.532 60.000 0.00 0.00 0.00 5.19
183 184 0.252881 AGGACAGATGGAGAAGGGCA 60.253 55.000 0.00 0.00 0.00 5.36
184 185 0.842635 GGACAGATGGAGAAGGGCAT 59.157 55.000 0.00 0.00 0.00 4.40
185 186 1.476471 GGACAGATGGAGAAGGGCATG 60.476 57.143 0.00 0.00 0.00 4.06
186 187 0.106819 ACAGATGGAGAAGGGCATGC 60.107 55.000 9.90 9.90 0.00 4.06
187 188 0.822532 CAGATGGAGAAGGGCATGCC 60.823 60.000 29.47 29.47 0.00 4.40
188 189 1.228228 GATGGAGAAGGGCATGCCA 59.772 57.895 36.56 16.15 37.98 4.92
189 190 0.396139 GATGGAGAAGGGCATGCCAA 60.396 55.000 36.56 13.68 37.98 4.52
190 191 0.396695 ATGGAGAAGGGCATGCCAAG 60.397 55.000 36.56 0.00 37.98 3.61
191 192 1.755783 GGAGAAGGGCATGCCAAGG 60.756 63.158 36.56 0.00 37.98 3.61
192 193 1.755783 GAGAAGGGCATGCCAAGGG 60.756 63.158 36.56 0.00 37.98 3.95
193 194 2.761213 GAAGGGCATGCCAAGGGG 60.761 66.667 36.56 0.00 37.98 4.79
194 195 4.403502 AAGGGCATGCCAAGGGGG 62.404 66.667 36.56 0.00 37.98 5.40
196 197 4.847367 GGGCATGCCAAGGGGGAG 62.847 72.222 36.56 0.00 38.23 4.30
197 198 4.847367 GGCATGCCAAGGGGGAGG 62.847 72.222 32.08 0.00 38.23 4.30
198 199 4.066139 GCATGCCAAGGGGGAGGT 62.066 66.667 6.36 0.00 38.70 3.85
199 200 2.772924 CATGCCAAGGGGGAGGTT 59.227 61.111 0.00 0.00 38.23 3.50
200 201 1.079073 CATGCCAAGGGGGAGGTTT 59.921 57.895 0.00 0.00 38.23 3.27
201 202 1.079073 ATGCCAAGGGGGAGGTTTG 59.921 57.895 0.00 0.00 38.23 2.93
202 203 2.283894 GCCAAGGGGGAGGTTTGG 60.284 66.667 0.00 0.00 43.31 3.28
203 204 2.445155 CCAAGGGGGAGGTTTGGG 59.555 66.667 0.00 0.00 40.01 4.12
204 205 2.167037 CCAAGGGGGAGGTTTGGGA 61.167 63.158 0.00 0.00 40.01 4.37
205 206 1.384191 CAAGGGGGAGGTTTGGGAG 59.616 63.158 0.00 0.00 0.00 4.30
206 207 1.072143 AAGGGGGAGGTTTGGGAGT 60.072 57.895 0.00 0.00 0.00 3.85
207 208 1.140772 AAGGGGGAGGTTTGGGAGTC 61.141 60.000 0.00 0.00 0.00 3.36
208 209 1.541620 GGGGGAGGTTTGGGAGTCT 60.542 63.158 0.00 0.00 0.00 3.24
209 210 1.685820 GGGGAGGTTTGGGAGTCTG 59.314 63.158 0.00 0.00 0.00 3.51
210 211 1.002011 GGGAGGTTTGGGAGTCTGC 60.002 63.158 0.00 0.00 0.00 4.26
211 212 1.376037 GGAGGTTTGGGAGTCTGCG 60.376 63.158 0.00 0.00 0.00 5.18
212 213 1.671742 GAGGTTTGGGAGTCTGCGA 59.328 57.895 0.00 0.00 0.00 5.10
213 214 0.670854 GAGGTTTGGGAGTCTGCGAC 60.671 60.000 0.00 1.15 0.00 5.19
214 215 1.122019 AGGTTTGGGAGTCTGCGACT 61.122 55.000 10.33 10.33 46.42 4.18
215 216 0.951040 GGTTTGGGAGTCTGCGACTG 60.951 60.000 14.47 0.00 43.53 3.51
216 217 0.951040 GTTTGGGAGTCTGCGACTGG 60.951 60.000 14.47 0.00 43.53 4.00
217 218 2.111999 TTTGGGAGTCTGCGACTGGG 62.112 60.000 14.47 0.00 43.53 4.45
218 219 2.680352 GGGAGTCTGCGACTGGGA 60.680 66.667 14.47 0.00 43.53 4.37
219 220 2.283529 GGGAGTCTGCGACTGGGAA 61.284 63.158 14.47 0.00 43.53 3.97
220 221 1.216710 GGAGTCTGCGACTGGGAAG 59.783 63.158 14.47 0.00 43.53 3.46
221 222 1.216710 GAGTCTGCGACTGGGAAGG 59.783 63.158 14.47 0.00 43.53 3.46
222 223 2.232298 GAGTCTGCGACTGGGAAGGG 62.232 65.000 14.47 0.00 43.53 3.95
223 224 3.003173 TCTGCGACTGGGAAGGGG 61.003 66.667 0.00 0.00 0.00 4.79
224 225 3.003173 CTGCGACTGGGAAGGGGA 61.003 66.667 0.00 0.00 0.00 4.81
225 226 2.528127 TGCGACTGGGAAGGGGAA 60.528 61.111 0.00 0.00 0.00 3.97
226 227 2.269241 GCGACTGGGAAGGGGAAG 59.731 66.667 0.00 0.00 0.00 3.46
227 228 2.990479 CGACTGGGAAGGGGAAGG 59.010 66.667 0.00 0.00 0.00 3.46
228 229 1.612442 CGACTGGGAAGGGGAAGGA 60.612 63.158 0.00 0.00 0.00 3.36
229 230 1.617947 CGACTGGGAAGGGGAAGGAG 61.618 65.000 0.00 0.00 0.00 3.69
230 231 1.229984 ACTGGGAAGGGGAAGGAGG 60.230 63.158 0.00 0.00 0.00 4.30
231 232 1.082954 CTGGGAAGGGGAAGGAGGA 59.917 63.158 0.00 0.00 0.00 3.71
232 233 0.327964 CTGGGAAGGGGAAGGAGGAT 60.328 60.000 0.00 0.00 0.00 3.24
233 234 0.123266 TGGGAAGGGGAAGGAGGATT 59.877 55.000 0.00 0.00 0.00 3.01
234 235 1.309876 GGGAAGGGGAAGGAGGATTT 58.690 55.000 0.00 0.00 0.00 2.17
235 236 1.063642 GGGAAGGGGAAGGAGGATTTG 60.064 57.143 0.00 0.00 0.00 2.32
236 237 1.686428 GGAAGGGGAAGGAGGATTTGC 60.686 57.143 0.00 0.00 0.00 3.68
237 238 1.286257 GAAGGGGAAGGAGGATTTGCT 59.714 52.381 0.00 0.00 0.00 3.91
238 239 0.627986 AGGGGAAGGAGGATTTGCTG 59.372 55.000 0.00 0.00 0.00 4.41
239 240 1.039785 GGGGAAGGAGGATTTGCTGC 61.040 60.000 0.00 0.00 0.00 5.25
240 241 0.323725 GGGAAGGAGGATTTGCTGCA 60.324 55.000 0.00 0.00 0.00 4.41
241 242 1.687368 GGGAAGGAGGATTTGCTGCAT 60.687 52.381 1.84 0.00 0.00 3.96
242 243 1.680207 GGAAGGAGGATTTGCTGCATC 59.320 52.381 1.84 0.00 0.00 3.91
243 244 1.332997 GAAGGAGGATTTGCTGCATCG 59.667 52.381 1.84 0.00 0.00 3.84
244 245 0.465097 AGGAGGATTTGCTGCATCGG 60.465 55.000 1.84 0.00 0.00 4.18
245 246 1.358046 GAGGATTTGCTGCATCGGC 59.642 57.895 1.84 0.00 41.68 5.54
246 247 2.025156 GGATTTGCTGCATCGGCG 59.975 61.111 1.84 0.00 45.35 6.46
247 248 2.764314 GGATTTGCTGCATCGGCGT 61.764 57.895 6.85 0.00 45.35 5.68
248 249 1.584483 GATTTGCTGCATCGGCGTG 60.584 57.895 6.85 5.92 45.35 5.34
249 250 1.980951 GATTTGCTGCATCGGCGTGA 61.981 55.000 6.85 0.00 45.35 4.35
250 251 2.257286 ATTTGCTGCATCGGCGTGAC 62.257 55.000 6.85 0.00 45.35 3.67
253 254 3.190849 CTGCATCGGCGTGACCAG 61.191 66.667 6.85 6.03 45.35 4.00
256 257 3.190849 CATCGGCGTGACCAGCAG 61.191 66.667 6.85 0.00 39.03 4.24
257 258 3.695606 ATCGGCGTGACCAGCAGT 61.696 61.111 6.85 0.00 39.03 4.40
258 259 3.240134 ATCGGCGTGACCAGCAGTT 62.240 57.895 6.85 0.00 39.03 3.16
259 260 1.884075 ATCGGCGTGACCAGCAGTTA 61.884 55.000 6.85 0.00 39.03 2.24
260 261 2.380410 CGGCGTGACCAGCAGTTAC 61.380 63.158 0.00 0.00 39.03 2.50
266 267 2.413837 GTGACCAGCAGTTACGATTGT 58.586 47.619 0.00 0.00 0.00 2.71
267 268 2.157668 GTGACCAGCAGTTACGATTGTG 59.842 50.000 0.00 0.00 0.00 3.33
268 269 2.036604 TGACCAGCAGTTACGATTGTGA 59.963 45.455 0.00 0.00 0.00 3.58
269 270 2.412089 GACCAGCAGTTACGATTGTGAC 59.588 50.000 0.00 0.00 34.96 3.67
270 271 2.224185 ACCAGCAGTTACGATTGTGACA 60.224 45.455 10.41 0.00 37.08 3.58
271 272 2.413112 CCAGCAGTTACGATTGTGACAG 59.587 50.000 10.41 3.65 37.08 3.51
272 273 3.317150 CAGCAGTTACGATTGTGACAGA 58.683 45.455 10.41 0.00 37.08 3.41
273 274 3.121944 CAGCAGTTACGATTGTGACAGAC 59.878 47.826 10.41 0.00 37.08 3.51
274 275 3.005897 AGCAGTTACGATTGTGACAGACT 59.994 43.478 10.41 2.04 37.08 3.24
275 276 3.365220 GCAGTTACGATTGTGACAGACTC 59.635 47.826 10.41 0.00 37.08 3.36
276 277 3.604198 CAGTTACGATTGTGACAGACTCG 59.396 47.826 10.26 10.26 37.08 4.18
277 278 3.252701 AGTTACGATTGTGACAGACTCGT 59.747 43.478 19.30 19.30 44.04 4.18
278 279 2.333389 ACGATTGTGACAGACTCGTC 57.667 50.000 11.49 0.00 38.05 4.20
279 280 1.068472 ACGATTGTGACAGACTCGTCC 60.068 52.381 11.49 0.00 38.05 4.79
280 281 1.732732 CGATTGTGACAGACTCGTCCC 60.733 57.143 4.43 0.00 34.88 4.46
281 282 1.546476 GATTGTGACAGACTCGTCCCT 59.454 52.381 0.00 0.00 34.88 4.20
282 283 0.673985 TTGTGACAGACTCGTCCCTG 59.326 55.000 0.00 0.00 34.88 4.45
283 284 1.179174 TGTGACAGACTCGTCCCTGG 61.179 60.000 0.00 0.00 34.88 4.45
284 285 1.606601 TGACAGACTCGTCCCTGGG 60.607 63.158 6.33 6.33 34.88 4.45
285 286 2.283966 ACAGACTCGTCCCTGGGG 60.284 66.667 14.00 2.42 34.85 4.96
286 287 3.077556 CAGACTCGTCCCTGGGGG 61.078 72.222 14.00 5.59 46.11 5.40
293 294 4.447342 GTCCCTGGGGGCCATGTG 62.447 72.222 14.00 0.00 43.94 3.21
311 312 3.702478 GCGTGAGGCATTTCTTTCC 57.298 52.632 0.00 0.00 42.87 3.13
312 313 1.168714 GCGTGAGGCATTTCTTTCCT 58.831 50.000 0.00 0.00 42.87 3.36
313 314 1.541588 GCGTGAGGCATTTCTTTCCTT 59.458 47.619 0.00 0.00 42.87 3.36
314 315 2.029918 GCGTGAGGCATTTCTTTCCTTT 60.030 45.455 0.00 0.00 42.87 3.11
315 316 3.552890 GCGTGAGGCATTTCTTTCCTTTT 60.553 43.478 0.00 0.00 42.87 2.27
316 317 4.620982 CGTGAGGCATTTCTTTCCTTTTT 58.379 39.130 0.00 0.00 0.00 1.94
335 336 5.897377 TTTTTGGTTTGCTAGCTCTATCC 57.103 39.130 17.23 11.35 0.00 2.59
336 337 4.568072 TTTGGTTTGCTAGCTCTATCCA 57.432 40.909 17.23 13.65 0.00 3.41
337 338 3.827008 TGGTTTGCTAGCTCTATCCAG 57.173 47.619 17.23 0.00 0.00 3.86
338 339 3.374764 TGGTTTGCTAGCTCTATCCAGA 58.625 45.455 17.23 0.00 0.00 3.86
349 350 3.478857 TCTATCCAGAGAGACTCGTCC 57.521 52.381 0.00 0.00 35.36 4.79
350 351 3.042682 TCTATCCAGAGAGACTCGTCCT 58.957 50.000 0.00 0.00 35.36 3.85
351 352 2.818751 ATCCAGAGAGACTCGTCCTT 57.181 50.000 0.00 0.00 35.36 3.36
352 353 1.827681 TCCAGAGAGACTCGTCCTTG 58.172 55.000 0.00 0.00 35.36 3.61
353 354 0.814457 CCAGAGAGACTCGTCCTTGG 59.186 60.000 0.00 0.00 35.36 3.61
354 355 0.814457 CAGAGAGACTCGTCCTTGGG 59.186 60.000 0.00 0.00 35.36 4.12
355 356 0.323908 AGAGAGACTCGTCCTTGGGG 60.324 60.000 0.00 0.00 35.36 4.96
356 357 1.305381 AGAGACTCGTCCTTGGGGG 60.305 63.158 0.00 0.00 0.00 5.40
357 358 3.003763 AGACTCGTCCTTGGGGGC 61.004 66.667 0.00 0.00 34.39 5.80
358 359 4.097361 GACTCGTCCTTGGGGGCC 62.097 72.222 0.00 0.00 32.63 5.80
359 360 4.974438 ACTCGTCCTTGGGGGCCA 62.974 66.667 4.39 0.00 32.63 5.36
360 361 3.411517 CTCGTCCTTGGGGGCCAT 61.412 66.667 4.39 0.00 32.63 4.40
361 362 3.704231 CTCGTCCTTGGGGGCCATG 62.704 68.421 4.39 0.00 32.63 3.66
362 363 4.047125 CGTCCTTGGGGGCCATGT 62.047 66.667 4.39 0.00 32.63 3.21
363 364 2.362889 GTCCTTGGGGGCCATGTG 60.363 66.667 4.39 0.00 31.53 3.21
364 365 4.380945 TCCTTGGGGGCCATGTGC 62.381 66.667 4.39 0.00 40.16 4.57
365 366 4.700448 CCTTGGGGGCCATGTGCA 62.700 66.667 4.39 0.00 43.89 4.57
408 409 2.610479 GGCAGATCTGTTCGTGTTCTCA 60.610 50.000 23.38 0.00 0.00 3.27
434 435 9.841295 AGTCAATTAATTCCTTATTAAGCCGTA 57.159 29.630 0.00 0.00 40.91 4.02
455 456 5.004821 CGTATAGGCTCGTATGCATGATTTC 59.995 44.000 10.16 0.00 34.04 2.17
459 460 3.186001 GGCTCGTATGCATGATTTCTCTG 59.814 47.826 10.16 0.00 34.04 3.35
460 461 3.186001 GCTCGTATGCATGATTTCTCTGG 59.814 47.826 10.16 0.00 0.00 3.86
504 507 8.208560 CGTGATAGATTTGCGTAACTCTTTATC 58.791 37.037 11.11 9.57 29.76 1.75
631 646 1.004862 AGGTAGGCTTCTTCCTTTGCC 59.995 52.381 0.00 0.00 45.21 4.52
651 666 3.306364 GCCTGATATAAGCATGTCCGACT 60.306 47.826 0.00 0.00 0.00 4.18
663 678 1.067142 TGTCCGACTGCTATGTGGAAC 60.067 52.381 0.00 0.00 37.35 3.62
677 692 7.147391 TGCTATGTGGAACCCTTGAGATAATTA 60.147 37.037 0.00 0.00 34.36 1.40
678 693 7.719633 GCTATGTGGAACCCTTGAGATAATTAA 59.280 37.037 0.00 0.00 34.36 1.40
679 694 9.799106 CTATGTGGAACCCTTGAGATAATTAAT 57.201 33.333 0.00 0.00 34.36 1.40
681 696 8.893563 TGTGGAACCCTTGAGATAATTAATTT 57.106 30.769 5.91 0.00 34.36 1.82
682 697 9.320295 TGTGGAACCCTTGAGATAATTAATTTT 57.680 29.630 5.91 0.00 34.36 1.82
683 698 9.803315 GTGGAACCCTTGAGATAATTAATTTTC 57.197 33.333 5.91 8.20 0.00 2.29
684 699 9.540538 TGGAACCCTTGAGATAATTAATTTTCA 57.459 29.630 17.46 11.54 0.00 2.69
723 759 1.652124 CATGCACGTACCGTCTGTTAC 59.348 52.381 0.00 0.00 38.32 2.50
768 835 7.912056 TCTGTAGATTGATTGTTCTTGGAAG 57.088 36.000 0.00 0.00 0.00 3.46
785 861 8.547967 TCTTGGAAGTAAATTATGTCTGACAC 57.452 34.615 13.50 0.00 0.00 3.67
833 909 1.960763 GTGGTCACGAGCATGCACA 60.961 57.895 21.98 4.00 41.20 4.57
834 910 1.227793 TGGTCACGAGCATGCACAA 60.228 52.632 21.98 0.00 33.39 3.33
837 913 0.588252 GTCACGAGCATGCACAAACT 59.412 50.000 21.98 0.00 0.00 2.66
849 925 5.920273 GCATGCACAAACTGTATGTTAGTTT 59.080 36.000 14.21 0.00 46.23 2.66
850 926 6.088085 GCATGCACAAACTGTATGTTAGTTTC 59.912 38.462 14.21 0.00 44.20 2.78
915 991 3.454371 ACGGCGTGATATAGAAGCTTT 57.546 42.857 13.76 0.00 0.00 3.51
1029 1133 3.379445 GTGAAGACCCTCGCCGGA 61.379 66.667 5.05 0.00 33.16 5.14
1184 1288 1.550065 CTCGCTGACTACAACATCCG 58.450 55.000 0.00 0.00 0.00 4.18
1213 1317 0.838122 CACCCTCCACCTTGTCCTCT 60.838 60.000 0.00 0.00 0.00 3.69
1239 1343 0.106318 GGGGAGGCATGCAGATCTTT 60.106 55.000 21.36 0.00 0.00 2.52
1255 1359 5.047021 CAGATCTTTGTGAAGACCCTCACTA 60.047 44.000 0.00 0.00 44.27 2.74
1269 1373 2.419297 CCTCACTAGCAAGACCATCACC 60.419 54.545 0.00 0.00 0.00 4.02
1295 1399 1.277557 GGTTGAGAGCTCTGACACCAT 59.722 52.381 23.91 0.00 0.00 3.55
1296 1400 2.615869 GTTGAGAGCTCTGACACCATC 58.384 52.381 23.91 7.78 0.00 3.51
1297 1401 0.813821 TGAGAGCTCTGACACCATCG 59.186 55.000 23.91 0.00 0.00 3.84
1298 1402 1.098869 GAGAGCTCTGACACCATCGA 58.901 55.000 23.91 0.00 0.00 3.59
1299 1403 0.814457 AGAGCTCTGACACCATCGAC 59.186 55.000 17.42 0.00 0.00 4.20
1300 1404 0.528017 GAGCTCTGACACCATCGACA 59.472 55.000 6.43 0.00 0.00 4.35
1301 1405 0.969149 AGCTCTGACACCATCGACAA 59.031 50.000 0.00 0.00 0.00 3.18
1302 1406 1.552337 AGCTCTGACACCATCGACAAT 59.448 47.619 0.00 0.00 0.00 2.71
1303 1407 1.662629 GCTCTGACACCATCGACAATG 59.337 52.381 0.00 0.00 34.93 2.82
1304 1408 2.932622 GCTCTGACACCATCGACAATGT 60.933 50.000 0.00 0.00 33.13 2.71
1305 1409 2.926200 CTCTGACACCATCGACAATGTC 59.074 50.000 14.71 14.71 41.51 3.06
1306 1410 2.298729 TCTGACACCATCGACAATGTCA 59.701 45.455 20.25 20.25 46.92 3.58
1307 1411 3.118905 TGACACCATCGACAATGTCAA 57.881 42.857 19.60 0.00 46.30 3.18
1308 1412 3.066380 TGACACCATCGACAATGTCAAG 58.934 45.455 19.60 2.22 46.30 3.02
1309 1413 2.416547 GACACCATCGACAATGTCAAGG 59.583 50.000 14.24 13.13 40.95 3.61
1310 1414 1.131126 CACCATCGACAATGTCAAGGC 59.869 52.381 14.24 0.00 33.13 4.35
1311 1415 0.734889 CCATCGACAATGTCAAGGCC 59.265 55.000 14.24 0.00 33.13 5.19
1312 1416 1.452110 CATCGACAATGTCAAGGCCA 58.548 50.000 14.24 0.00 32.09 5.36
1313 1417 1.811965 CATCGACAATGTCAAGGCCAA 59.188 47.619 14.24 0.00 32.09 4.52
1314 1418 1.522668 TCGACAATGTCAAGGCCAAG 58.477 50.000 14.24 0.00 32.09 3.61
1315 1419 1.071542 TCGACAATGTCAAGGCCAAGA 59.928 47.619 14.24 0.00 32.09 3.02
1316 1420 2.086869 CGACAATGTCAAGGCCAAGAT 58.913 47.619 14.24 0.00 32.09 2.40
1317 1421 2.096496 CGACAATGTCAAGGCCAAGATC 59.904 50.000 14.24 0.00 32.09 2.75
1318 1422 2.424956 GACAATGTCAAGGCCAAGATCC 59.575 50.000 8.74 0.00 32.09 3.36
1319 1423 2.225091 ACAATGTCAAGGCCAAGATCCA 60.225 45.455 5.01 0.00 0.00 3.41
1320 1424 2.426024 CAATGTCAAGGCCAAGATCCAG 59.574 50.000 5.01 0.00 0.00 3.86
1321 1425 0.329261 TGTCAAGGCCAAGATCCAGG 59.671 55.000 5.01 0.00 0.00 4.45
1322 1426 0.620556 GTCAAGGCCAAGATCCAGGA 59.379 55.000 5.01 0.00 0.00 3.86
1323 1427 0.620556 TCAAGGCCAAGATCCAGGAC 59.379 55.000 5.01 1.96 0.00 3.85
1324 1428 0.329261 CAAGGCCAAGATCCAGGACA 59.671 55.000 5.01 0.00 34.45 4.02
1325 1429 1.075601 AAGGCCAAGATCCAGGACAA 58.924 50.000 5.01 0.00 34.45 3.18
1326 1430 0.622665 AGGCCAAGATCCAGGACAAG 59.377 55.000 5.01 0.00 34.45 3.16
1327 1431 0.394899 GGCCAAGATCCAGGACAAGG 60.395 60.000 0.00 0.00 31.39 3.61
1328 1432 0.620556 GCCAAGATCCAGGACAAGGA 59.379 55.000 5.26 0.00 39.97 3.36
1329 1433 1.407989 GCCAAGATCCAGGACAAGGAG 60.408 57.143 5.26 0.00 38.83 3.69
1330 1434 1.211457 CCAAGATCCAGGACAAGGAGG 59.789 57.143 0.00 0.00 38.83 4.30
1331 1435 1.211457 CAAGATCCAGGACAAGGAGGG 59.789 57.143 0.00 0.00 38.83 4.30
1332 1436 0.985490 AGATCCAGGACAAGGAGGGC 60.985 60.000 0.00 0.00 38.83 5.19
1333 1437 1.229951 ATCCAGGACAAGGAGGGCA 60.230 57.895 0.00 0.00 38.83 5.36
1334 1438 0.625683 ATCCAGGACAAGGAGGGCAT 60.626 55.000 0.00 0.00 38.83 4.40
1335 1439 0.846427 TCCAGGACAAGGAGGGCATT 60.846 55.000 0.00 0.00 0.00 3.56
1336 1440 0.394899 CCAGGACAAGGAGGGCATTC 60.395 60.000 0.00 0.00 0.00 2.67
1337 1441 0.394899 CAGGACAAGGAGGGCATTCC 60.395 60.000 0.00 0.00 37.52 3.01
1713 1817 0.846427 AGGGCATTCCTCCAGACCAA 60.846 55.000 0.00 0.00 44.06 3.67
1812 2391 0.468226 TTCACCTTGTCCTGCGTCTT 59.532 50.000 0.00 0.00 0.00 3.01
1924 2969 2.191400 CCAAGATCCAGGACAAGGAGA 58.809 52.381 0.00 0.00 38.83 3.71
1980 3025 1.605992 CAAGCAGCTGGAGGATGGA 59.394 57.895 17.12 0.00 0.00 3.41
2105 3985 1.497991 CATGGTCGTTCGTTGTGTCT 58.502 50.000 0.00 0.00 0.00 3.41
2120 4000 6.314152 TCGTTGTGTCTGTTTCATTTGAACTA 59.686 34.615 0.00 0.00 33.13 2.24
2141 4023 2.654749 TTCATCGTTCGCATCAGTCT 57.345 45.000 0.00 0.00 0.00 3.24
2320 4345 0.239082 TCTGTTCATTGCTTGCGCTG 59.761 50.000 9.73 2.28 36.97 5.18
2384 4417 8.537728 TGGATGATGCAATTTATTCCTAAACT 57.462 30.769 0.00 0.00 29.85 2.66
2501 4559 9.199982 CGTGTCTGGTAAAGAATTAAACTTCTA 57.800 33.333 0.00 0.00 36.40 2.10
2586 4679 1.141053 CTAAACAATAGGCCGCTCCCT 59.859 52.381 0.00 0.00 39.05 4.20
2592 4685 2.618709 CAATAGGCCGCTCCCTTAAAAG 59.381 50.000 0.00 0.00 36.41 2.27
2593 4686 1.282382 TAGGCCGCTCCCTTAAAAGT 58.718 50.000 0.00 0.00 36.41 2.66
2597 4690 2.429478 GCCGCTCCCTTAAAAGTAACA 58.571 47.619 0.00 0.00 0.00 2.41
2606 4699 7.039993 GCTCCCTTAAAAGTAACAGGAAATTCA 60.040 37.037 0.00 0.00 0.00 2.57
2609 4702 9.825109 CCCTTAAAAGTAACAGGAAATTCAAAA 57.175 29.630 0.00 0.00 0.00 2.44
2662 4755 3.682377 TGCATTGCAAATTTCTCATGCTG 59.318 39.130 9.33 2.15 40.66 4.41
2722 4815 8.854614 AATTAGCTTAACTGGGCTATAATCTG 57.145 34.615 0.00 0.00 40.16 2.90
2799 5285 2.094675 ACAAAAGGGGATGATGAAGCG 58.905 47.619 0.00 0.00 0.00 4.68
2853 5341 3.071479 GGAATCGCAACTTGAACACCTA 58.929 45.455 0.00 0.00 0.00 3.08
2931 5446 9.466497 TTTAAGACATGGATAGCAAGAAAGAAT 57.534 29.630 0.00 0.00 0.00 2.40
3009 6768 7.243604 TCATGGCCTTGTTTTGAAATCTAAT 57.756 32.000 17.54 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.335594 GGAACGAAGGGTTTATCAATGAGG 59.664 45.833 0.00 0.00 39.50 3.86
32 33 4.941263 TGGAACGAAGGGTTTATCAATGAG 59.059 41.667 0.00 0.00 39.50 2.90
34 35 5.835113 ATGGAACGAAGGGTTTATCAATG 57.165 39.130 0.00 0.00 39.50 2.82
72 73 0.843309 TGCCCTCTCAAACACCTTCA 59.157 50.000 0.00 0.00 0.00 3.02
78 79 2.106338 TCTTGATGTGCCCTCTCAAACA 59.894 45.455 0.00 0.00 0.00 2.83
79 80 2.783135 TCTTGATGTGCCCTCTCAAAC 58.217 47.619 0.00 0.00 0.00 2.93
81 82 4.033009 TCTATCTTGATGTGCCCTCTCAA 58.967 43.478 0.00 0.00 0.00 3.02
112 113 1.690633 GGAGGCCATGGACCTGAGA 60.691 63.158 26.43 0.00 37.77 3.27
116 117 0.712380 ATTTTGGAGGCCATGGACCT 59.288 50.000 22.96 22.96 41.41 3.85
117 118 0.826062 CATTTTGGAGGCCATGGACC 59.174 55.000 16.13 15.57 31.53 4.46
118 119 0.826062 CCATTTTGGAGGCCATGGAC 59.174 55.000 18.40 14.73 40.96 4.02
119 120 0.325484 CCCATTTTGGAGGCCATGGA 60.325 55.000 18.40 0.00 40.96 3.41
120 121 1.339644 CCCCATTTTGGAGGCCATGG 61.340 60.000 7.63 7.63 40.96 3.66
121 122 1.339644 CCCCCATTTTGGAGGCCATG 61.340 60.000 5.01 0.00 40.96 3.66
122 123 1.003312 CCCCCATTTTGGAGGCCAT 59.997 57.895 5.01 0.00 40.96 4.40
123 124 2.449312 CCCCCATTTTGGAGGCCA 59.551 61.111 5.01 0.00 40.96 5.36
124 125 3.083349 GCCCCCATTTTGGAGGCC 61.083 66.667 7.80 0.00 40.96 5.19
125 126 1.273986 ATTGCCCCCATTTTGGAGGC 61.274 55.000 11.81 11.81 40.96 4.70
126 127 2.041701 CTATTGCCCCCATTTTGGAGG 58.958 52.381 0.00 0.00 40.96 4.30
127 128 2.750814 ACTATTGCCCCCATTTTGGAG 58.249 47.619 0.00 0.00 40.96 3.86
128 129 2.836981 CAACTATTGCCCCCATTTTGGA 59.163 45.455 0.00 0.00 40.96 3.53
129 130 2.571202 ACAACTATTGCCCCCATTTTGG 59.429 45.455 0.00 0.00 37.25 3.28
130 131 3.598299 CACAACTATTGCCCCCATTTTG 58.402 45.455 0.00 0.00 0.00 2.44
131 132 2.571202 CCACAACTATTGCCCCCATTTT 59.429 45.455 0.00 0.00 0.00 1.82
132 133 2.187100 CCACAACTATTGCCCCCATTT 58.813 47.619 0.00 0.00 0.00 2.32
133 134 1.864669 CCACAACTATTGCCCCCATT 58.135 50.000 0.00 0.00 0.00 3.16
134 135 0.687427 GCCACAACTATTGCCCCCAT 60.687 55.000 0.00 0.00 0.00 4.00
135 136 1.304879 GCCACAACTATTGCCCCCA 60.305 57.895 0.00 0.00 0.00 4.96
136 137 0.902516 TTGCCACAACTATTGCCCCC 60.903 55.000 0.00 0.00 0.00 5.40
137 138 1.134729 CATTGCCACAACTATTGCCCC 60.135 52.381 0.00 0.00 0.00 5.80
138 139 1.134729 CCATTGCCACAACTATTGCCC 60.135 52.381 0.00 0.00 0.00 5.36
139 140 1.824230 TCCATTGCCACAACTATTGCC 59.176 47.619 0.00 0.00 0.00 4.52
140 141 2.159198 CCTCCATTGCCACAACTATTGC 60.159 50.000 0.00 0.00 0.00 3.56
141 142 3.355378 TCCTCCATTGCCACAACTATTG 58.645 45.455 0.00 0.00 0.00 1.90
142 143 3.266772 TCTCCTCCATTGCCACAACTATT 59.733 43.478 0.00 0.00 0.00 1.73
143 144 2.846206 TCTCCTCCATTGCCACAACTAT 59.154 45.455 0.00 0.00 0.00 2.12
144 145 2.237143 CTCTCCTCCATTGCCACAACTA 59.763 50.000 0.00 0.00 0.00 2.24
145 146 1.004044 CTCTCCTCCATTGCCACAACT 59.996 52.381 0.00 0.00 0.00 3.16
146 147 1.457346 CTCTCCTCCATTGCCACAAC 58.543 55.000 0.00 0.00 0.00 3.32
147 148 0.329261 CCTCTCCTCCATTGCCACAA 59.671 55.000 0.00 0.00 0.00 3.33
148 149 0.547471 TCCTCTCCTCCATTGCCACA 60.547 55.000 0.00 0.00 0.00 4.17
149 150 0.107459 GTCCTCTCCTCCATTGCCAC 60.107 60.000 0.00 0.00 0.00 5.01
150 151 0.547471 TGTCCTCTCCTCCATTGCCA 60.547 55.000 0.00 0.00 0.00 4.92
151 152 0.179936 CTGTCCTCTCCTCCATTGCC 59.820 60.000 0.00 0.00 0.00 4.52
152 153 1.198713 TCTGTCCTCTCCTCCATTGC 58.801 55.000 0.00 0.00 0.00 3.56
153 154 2.104451 CCATCTGTCCTCTCCTCCATTG 59.896 54.545 0.00 0.00 0.00 2.82
154 155 2.022625 TCCATCTGTCCTCTCCTCCATT 60.023 50.000 0.00 0.00 0.00 3.16
155 156 1.577729 TCCATCTGTCCTCTCCTCCAT 59.422 52.381 0.00 0.00 0.00 3.41
156 157 1.010795 TCCATCTGTCCTCTCCTCCA 58.989 55.000 0.00 0.00 0.00 3.86
157 158 1.216678 TCTCCATCTGTCCTCTCCTCC 59.783 57.143 0.00 0.00 0.00 4.30
158 159 2.746279 TCTCCATCTGTCCTCTCCTC 57.254 55.000 0.00 0.00 0.00 3.71
159 160 2.359143 CCTTCTCCATCTGTCCTCTCCT 60.359 54.545 0.00 0.00 0.00 3.69
160 161 2.038659 CCTTCTCCATCTGTCCTCTCC 58.961 57.143 0.00 0.00 0.00 3.71
161 162 2.038659 CCCTTCTCCATCTGTCCTCTC 58.961 57.143 0.00 0.00 0.00 3.20
162 163 1.969240 GCCCTTCTCCATCTGTCCTCT 60.969 57.143 0.00 0.00 0.00 3.69
163 164 0.467804 GCCCTTCTCCATCTGTCCTC 59.532 60.000 0.00 0.00 0.00 3.71
164 165 0.252881 TGCCCTTCTCCATCTGTCCT 60.253 55.000 0.00 0.00 0.00 3.85
165 166 0.842635 ATGCCCTTCTCCATCTGTCC 59.157 55.000 0.00 0.00 0.00 4.02
166 167 1.964552 CATGCCCTTCTCCATCTGTC 58.035 55.000 0.00 0.00 0.00 3.51
167 168 0.106819 GCATGCCCTTCTCCATCTGT 60.107 55.000 6.36 0.00 0.00 3.41
168 169 0.822532 GGCATGCCCTTCTCCATCTG 60.823 60.000 27.24 0.00 0.00 2.90
169 170 1.284111 TGGCATGCCCTTCTCCATCT 61.284 55.000 33.44 0.00 34.56 2.90
170 171 0.396139 TTGGCATGCCCTTCTCCATC 60.396 55.000 33.44 5.25 34.56 3.51
171 172 0.396695 CTTGGCATGCCCTTCTCCAT 60.397 55.000 33.44 0.00 34.56 3.41
172 173 1.000521 CTTGGCATGCCCTTCTCCA 60.001 57.895 33.44 10.68 34.56 3.86
173 174 1.755783 CCTTGGCATGCCCTTCTCC 60.756 63.158 33.44 7.62 34.56 3.71
174 175 1.755783 CCCTTGGCATGCCCTTCTC 60.756 63.158 33.44 8.41 34.56 2.87
175 176 2.361771 CCCTTGGCATGCCCTTCT 59.638 61.111 33.44 0.00 34.56 2.85
176 177 2.761213 CCCCTTGGCATGCCCTTC 60.761 66.667 33.44 9.62 34.56 3.46
177 178 4.403502 CCCCCTTGGCATGCCCTT 62.404 66.667 33.44 0.00 34.56 3.95
179 180 4.847367 CTCCCCCTTGGCATGCCC 62.847 72.222 33.44 16.23 34.56 5.36
180 181 4.847367 CCTCCCCCTTGGCATGCC 62.847 72.222 30.54 30.54 0.00 4.40
181 182 3.607084 AACCTCCCCCTTGGCATGC 62.607 63.158 9.90 9.90 0.00 4.06
182 183 1.079073 AAACCTCCCCCTTGGCATG 59.921 57.895 0.00 0.00 0.00 4.06
183 184 1.079073 CAAACCTCCCCCTTGGCAT 59.921 57.895 0.00 0.00 0.00 4.40
184 185 2.525592 CAAACCTCCCCCTTGGCA 59.474 61.111 0.00 0.00 0.00 4.92
185 186 2.283894 CCAAACCTCCCCCTTGGC 60.284 66.667 0.00 0.00 33.65 4.52
186 187 2.155197 CTCCCAAACCTCCCCCTTGG 62.155 65.000 0.00 0.00 39.51 3.61
187 188 1.384191 CTCCCAAACCTCCCCCTTG 59.616 63.158 0.00 0.00 0.00 3.61
188 189 1.072143 ACTCCCAAACCTCCCCCTT 60.072 57.895 0.00 0.00 0.00 3.95
189 190 1.541620 GACTCCCAAACCTCCCCCT 60.542 63.158 0.00 0.00 0.00 4.79
190 191 1.541620 AGACTCCCAAACCTCCCCC 60.542 63.158 0.00 0.00 0.00 5.40
191 192 1.685820 CAGACTCCCAAACCTCCCC 59.314 63.158 0.00 0.00 0.00 4.81
192 193 1.002011 GCAGACTCCCAAACCTCCC 60.002 63.158 0.00 0.00 0.00 4.30
193 194 1.376037 CGCAGACTCCCAAACCTCC 60.376 63.158 0.00 0.00 0.00 4.30
194 195 1.671742 TCGCAGACTCCCAAACCTC 59.328 57.895 0.00 0.00 0.00 3.85
195 196 3.885814 TCGCAGACTCCCAAACCT 58.114 55.556 0.00 0.00 0.00 3.50
206 207 3.003173 CCCCTTCCCAGTCGCAGA 61.003 66.667 0.00 0.00 0.00 4.26
207 208 2.527951 CTTCCCCTTCCCAGTCGCAG 62.528 65.000 0.00 0.00 0.00 5.18
208 209 2.528127 TTCCCCTTCCCAGTCGCA 60.528 61.111 0.00 0.00 0.00 5.10
209 210 2.269241 CTTCCCCTTCCCAGTCGC 59.731 66.667 0.00 0.00 0.00 5.19
210 211 1.612442 TCCTTCCCCTTCCCAGTCG 60.612 63.158 0.00 0.00 0.00 4.18
211 212 1.275421 CCTCCTTCCCCTTCCCAGTC 61.275 65.000 0.00 0.00 0.00 3.51
212 213 1.229984 CCTCCTTCCCCTTCCCAGT 60.230 63.158 0.00 0.00 0.00 4.00
213 214 0.327964 ATCCTCCTTCCCCTTCCCAG 60.328 60.000 0.00 0.00 0.00 4.45
214 215 0.123266 AATCCTCCTTCCCCTTCCCA 59.877 55.000 0.00 0.00 0.00 4.37
215 216 1.063642 CAAATCCTCCTTCCCCTTCCC 60.064 57.143 0.00 0.00 0.00 3.97
216 217 1.686428 GCAAATCCTCCTTCCCCTTCC 60.686 57.143 0.00 0.00 0.00 3.46
217 218 1.286257 AGCAAATCCTCCTTCCCCTTC 59.714 52.381 0.00 0.00 0.00 3.46
218 219 1.006400 CAGCAAATCCTCCTTCCCCTT 59.994 52.381 0.00 0.00 0.00 3.95
219 220 0.627986 CAGCAAATCCTCCTTCCCCT 59.372 55.000 0.00 0.00 0.00 4.79
220 221 1.039785 GCAGCAAATCCTCCTTCCCC 61.040 60.000 0.00 0.00 0.00 4.81
221 222 0.323725 TGCAGCAAATCCTCCTTCCC 60.324 55.000 0.00 0.00 0.00 3.97
222 223 1.680207 GATGCAGCAAATCCTCCTTCC 59.320 52.381 0.00 0.00 0.00 3.46
223 224 1.332997 CGATGCAGCAAATCCTCCTTC 59.667 52.381 1.53 0.00 0.00 3.46
224 225 1.386533 CGATGCAGCAAATCCTCCTT 58.613 50.000 1.53 0.00 0.00 3.36
225 226 0.465097 CCGATGCAGCAAATCCTCCT 60.465 55.000 1.53 0.00 0.00 3.69
226 227 2.028130 CCGATGCAGCAAATCCTCC 58.972 57.895 1.53 0.00 0.00 4.30
227 228 1.358046 GCCGATGCAGCAAATCCTC 59.642 57.895 1.53 0.00 37.47 3.71
228 229 2.475466 CGCCGATGCAGCAAATCCT 61.475 57.895 1.53 0.00 37.32 3.24
229 230 2.025156 CGCCGATGCAGCAAATCC 59.975 61.111 1.53 0.00 37.32 3.01
230 231 1.584483 CACGCCGATGCAGCAAATC 60.584 57.895 1.53 0.00 37.32 2.17
231 232 2.039974 TCACGCCGATGCAGCAAAT 61.040 52.632 1.53 0.00 37.32 2.32
232 233 2.667874 TCACGCCGATGCAGCAAA 60.668 55.556 1.53 0.00 37.32 3.68
233 234 3.422303 GTCACGCCGATGCAGCAA 61.422 61.111 1.53 0.00 37.32 3.91
236 237 3.190849 CTGGTCACGCCGATGCAG 61.191 66.667 0.00 0.00 41.21 4.41
239 240 3.190849 CTGCTGGTCACGCCGATG 61.191 66.667 0.00 0.00 41.21 3.84
240 241 1.884075 TAACTGCTGGTCACGCCGAT 61.884 55.000 0.00 0.00 41.21 4.18
241 242 2.566570 TAACTGCTGGTCACGCCGA 61.567 57.895 0.00 0.00 41.21 5.54
242 243 2.048597 TAACTGCTGGTCACGCCG 60.049 61.111 0.00 0.00 41.21 6.46
243 244 2.380410 CGTAACTGCTGGTCACGCC 61.380 63.158 0.00 0.00 37.90 5.68
244 245 0.736325 ATCGTAACTGCTGGTCACGC 60.736 55.000 8.36 0.00 32.85 5.34
245 246 1.390123 CAATCGTAACTGCTGGTCACG 59.610 52.381 7.31 7.31 0.00 4.35
246 247 2.157668 CACAATCGTAACTGCTGGTCAC 59.842 50.000 0.00 0.00 0.00 3.67
247 248 2.036604 TCACAATCGTAACTGCTGGTCA 59.963 45.455 0.00 0.00 0.00 4.02
248 249 2.412089 GTCACAATCGTAACTGCTGGTC 59.588 50.000 0.00 0.00 0.00 4.02
249 250 2.224185 TGTCACAATCGTAACTGCTGGT 60.224 45.455 0.00 0.00 0.00 4.00
250 251 2.412870 TGTCACAATCGTAACTGCTGG 58.587 47.619 0.00 0.00 0.00 4.85
251 252 3.121944 GTCTGTCACAATCGTAACTGCTG 59.878 47.826 0.00 0.00 0.00 4.41
252 253 3.005897 AGTCTGTCACAATCGTAACTGCT 59.994 43.478 0.00 0.00 0.00 4.24
253 254 3.318017 AGTCTGTCACAATCGTAACTGC 58.682 45.455 0.00 0.00 0.00 4.40
254 255 3.604198 CGAGTCTGTCACAATCGTAACTG 59.396 47.826 0.00 0.00 0.00 3.16
255 256 3.252701 ACGAGTCTGTCACAATCGTAACT 59.747 43.478 9.88 0.00 44.11 2.24
256 257 3.562505 ACGAGTCTGTCACAATCGTAAC 58.437 45.455 9.88 0.00 44.11 2.50
257 258 3.365666 GGACGAGTCTGTCACAATCGTAA 60.366 47.826 11.22 0.00 45.74 3.18
258 259 2.161012 GGACGAGTCTGTCACAATCGTA 59.839 50.000 11.22 0.00 45.74 3.43
260 261 1.618861 GGACGAGTCTGTCACAATCG 58.381 55.000 14.24 5.43 40.72 3.34
261 262 1.546476 AGGGACGAGTCTGTCACAATC 59.454 52.381 16.20 1.84 44.91 2.67
262 263 1.273606 CAGGGACGAGTCTGTCACAAT 59.726 52.381 16.20 0.00 44.91 2.71
263 264 0.673985 CAGGGACGAGTCTGTCACAA 59.326 55.000 16.20 0.00 44.91 3.33
264 265 1.179174 CCAGGGACGAGTCTGTCACA 61.179 60.000 16.20 0.00 44.91 3.58
265 266 1.587054 CCAGGGACGAGTCTGTCAC 59.413 63.158 14.24 11.62 42.76 3.67
266 267 1.606601 CCCAGGGACGAGTCTGTCA 60.607 63.158 0.00 0.00 40.72 3.58
267 268 2.352032 CCCCAGGGACGAGTCTGTC 61.352 68.421 7.25 6.58 37.50 3.51
268 269 2.283966 CCCCAGGGACGAGTCTGT 60.284 66.667 7.25 0.00 37.50 3.41
293 294 1.168714 AGGAAAGAAATGCCTCACGC 58.831 50.000 0.00 0.00 38.31 5.34
294 295 3.923017 AAAGGAAAGAAATGCCTCACG 57.077 42.857 0.00 0.00 0.00 4.35
313 314 5.321102 TGGATAGAGCTAGCAAACCAAAAA 58.679 37.500 18.83 0.00 0.00 1.94
314 315 4.917385 TGGATAGAGCTAGCAAACCAAAA 58.083 39.130 18.83 0.00 0.00 2.44
315 316 4.225042 TCTGGATAGAGCTAGCAAACCAAA 59.775 41.667 18.83 3.11 0.00 3.28
316 317 3.774766 TCTGGATAGAGCTAGCAAACCAA 59.225 43.478 18.83 7.18 0.00 3.67
317 318 3.374764 TCTGGATAGAGCTAGCAAACCA 58.625 45.455 18.83 16.23 0.00 3.67
318 319 3.988819 CTCTGGATAGAGCTAGCAAACC 58.011 50.000 18.83 12.64 43.62 3.27
329 330 3.042682 AGGACGAGTCTCTCTGGATAGA 58.957 50.000 3.09 0.00 0.00 1.98
330 331 3.485463 AGGACGAGTCTCTCTGGATAG 57.515 52.381 3.09 0.00 0.00 2.08
331 332 3.546724 CAAGGACGAGTCTCTCTGGATA 58.453 50.000 3.09 0.00 0.00 2.59
332 333 2.374184 CAAGGACGAGTCTCTCTGGAT 58.626 52.381 3.09 0.00 0.00 3.41
333 334 1.614583 CCAAGGACGAGTCTCTCTGGA 60.615 57.143 3.09 0.00 0.00 3.86
334 335 0.814457 CCAAGGACGAGTCTCTCTGG 59.186 60.000 3.09 2.08 0.00 3.86
335 336 0.814457 CCCAAGGACGAGTCTCTCTG 59.186 60.000 3.09 0.00 0.00 3.35
336 337 0.323908 CCCCAAGGACGAGTCTCTCT 60.324 60.000 3.09 0.00 33.47 3.10
337 338 1.324005 CCCCCAAGGACGAGTCTCTC 61.324 65.000 3.09 0.00 38.24 3.20
338 339 1.305381 CCCCCAAGGACGAGTCTCT 60.305 63.158 3.09 0.00 38.24 3.10
339 340 3.020237 GCCCCCAAGGACGAGTCTC 62.020 68.421 3.09 0.00 38.24 3.36
340 341 3.003763 GCCCCCAAGGACGAGTCT 61.004 66.667 3.09 0.00 38.24 3.24
341 342 4.097361 GGCCCCCAAGGACGAGTC 62.097 72.222 0.00 0.00 38.24 3.36
347 348 4.380945 GCACATGGCCCCCAAGGA 62.381 66.667 0.00 0.00 36.95 3.36
348 349 3.988050 ATGCACATGGCCCCCAAGG 62.988 63.158 0.00 0.00 43.89 3.61
349 350 2.364579 ATGCACATGGCCCCCAAG 60.365 61.111 0.00 0.00 43.89 3.61
350 351 2.160406 TACATGCACATGGCCCCCAA 62.160 55.000 14.73 0.00 42.91 4.12
351 352 2.570774 CTACATGCACATGGCCCCCA 62.571 60.000 14.73 0.00 42.91 4.96
352 353 1.829533 CTACATGCACATGGCCCCC 60.830 63.158 14.73 0.00 42.91 5.40
353 354 0.178981 ATCTACATGCACATGGCCCC 60.179 55.000 14.73 0.00 42.91 5.80
354 355 1.338973 CAATCTACATGCACATGGCCC 59.661 52.381 14.73 0.00 42.91 5.80
355 356 2.300433 TCAATCTACATGCACATGGCC 58.700 47.619 14.73 0.00 42.91 5.36
356 357 4.999311 TCTATCAATCTACATGCACATGGC 59.001 41.667 14.73 0.00 42.91 4.40
357 358 7.389607 TCAATCTATCAATCTACATGCACATGG 59.610 37.037 14.73 0.00 42.91 3.66
358 359 8.319143 TCAATCTATCAATCTACATGCACATG 57.681 34.615 9.06 9.06 44.15 3.21
359 360 8.913487 TTCAATCTATCAATCTACATGCACAT 57.087 30.769 0.00 0.00 0.00 3.21
360 361 7.443272 CCTTCAATCTATCAATCTACATGCACA 59.557 37.037 0.00 0.00 0.00 4.57
361 362 7.094890 CCCTTCAATCTATCAATCTACATGCAC 60.095 40.741 0.00 0.00 0.00 4.57
362 363 6.938596 CCCTTCAATCTATCAATCTACATGCA 59.061 38.462 0.00 0.00 0.00 3.96
363 364 6.373774 CCCCTTCAATCTATCAATCTACATGC 59.626 42.308 0.00 0.00 0.00 4.06
364 365 6.373774 GCCCCTTCAATCTATCAATCTACATG 59.626 42.308 0.00 0.00 0.00 3.21
365 366 6.044754 TGCCCCTTCAATCTATCAATCTACAT 59.955 38.462 0.00 0.00 0.00 2.29
408 409 8.747538 ACGGCTTAATAAGGAATTAATTGACT 57.252 30.769 5.17 0.81 38.93 3.41
434 435 5.046735 AGAGAAATCATGCATACGAGCCTAT 60.047 40.000 0.00 0.00 0.00 2.57
455 456 0.099082 GAGCGGACGAACTACCAGAG 59.901 60.000 0.00 0.00 0.00 3.35
459 460 1.139095 CAGGAGCGGACGAACTACC 59.861 63.158 0.00 0.00 0.00 3.18
460 461 1.516603 GCAGGAGCGGACGAACTAC 60.517 63.158 0.00 0.00 0.00 2.73
504 507 4.930963 TGCGGCTACCATTTTATTCAATG 58.069 39.130 0.00 0.00 34.39 2.82
512 515 3.004734 GCAGATTATGCGGCTACCATTTT 59.995 43.478 0.00 0.00 46.99 1.82
631 646 3.677121 GCAGTCGGACATGCTTATATCAG 59.323 47.826 18.85 0.00 39.38 2.90
651 666 2.265367 TCTCAAGGGTTCCACATAGCA 58.735 47.619 0.00 0.00 0.00 3.49
758 825 8.999431 TGTCAGACATAATTTACTTCCAAGAAC 58.001 33.333 0.00 0.00 0.00 3.01
768 835 6.255020 CCACGTAGGTGTCAGACATAATTTAC 59.745 42.308 6.51 5.01 42.80 2.01
785 861 8.888579 AACTAAAGATTATGATTCCACGTAGG 57.111 34.615 0.00 0.00 39.47 3.18
886 962 6.659361 TCTATATCACGCCGTAGAGATTAC 57.341 41.667 0.00 0.00 0.00 1.89
928 1004 8.677148 ACCGAGCAAACTAATATGACAAATAT 57.323 30.769 0.00 0.00 0.00 1.28
1024 1128 1.749258 GGGTGATGGTCTTTCCGGC 60.749 63.158 0.00 0.00 39.52 6.13
1029 1133 0.905357 CCTCGAGGGTGATGGTCTTT 59.095 55.000 24.62 0.00 0.00 2.52
1113 1217 0.969917 AGATGAGACGCTGCTGGTCT 60.970 55.000 9.50 9.50 46.91 3.85
1255 1359 1.004044 CTCAAGGGTGATGGTCTTGCT 59.996 52.381 0.00 0.00 38.13 3.91
1269 1373 1.898472 TCAGAGCTCTCAACCTCAAGG 59.102 52.381 14.96 0.00 42.17 3.61
1278 1382 0.813821 CGATGGTGTCAGAGCTCTCA 59.186 55.000 14.96 9.04 0.00 3.27
1282 1386 0.969149 TTGTCGATGGTGTCAGAGCT 59.031 50.000 0.00 0.00 0.00 4.09
1283 1387 1.662629 CATTGTCGATGGTGTCAGAGC 59.337 52.381 0.00 0.00 31.83 4.09
1295 1399 1.071542 TCTTGGCCTTGACATTGTCGA 59.928 47.619 11.97 9.27 34.95 4.20
1296 1400 1.522668 TCTTGGCCTTGACATTGTCG 58.477 50.000 11.97 0.00 34.95 4.35
1297 1401 2.424956 GGATCTTGGCCTTGACATTGTC 59.575 50.000 9.93 9.93 0.00 3.18
1298 1402 2.225091 TGGATCTTGGCCTTGACATTGT 60.225 45.455 3.32 0.00 0.00 2.71
1299 1403 2.426024 CTGGATCTTGGCCTTGACATTG 59.574 50.000 3.32 0.00 0.00 2.82
1300 1404 2.622452 CCTGGATCTTGGCCTTGACATT 60.622 50.000 3.32 0.00 0.00 2.71
1301 1405 1.064166 CCTGGATCTTGGCCTTGACAT 60.064 52.381 3.32 0.00 0.00 3.06
1302 1406 0.329261 CCTGGATCTTGGCCTTGACA 59.671 55.000 3.32 0.00 0.00 3.58
1303 1407 0.620556 TCCTGGATCTTGGCCTTGAC 59.379 55.000 3.32 0.00 0.00 3.18
1304 1408 0.620556 GTCCTGGATCTTGGCCTTGA 59.379 55.000 3.32 1.92 0.00 3.02
1305 1409 0.329261 TGTCCTGGATCTTGGCCTTG 59.671 55.000 3.32 0.00 0.00 3.61
1306 1410 1.005215 CTTGTCCTGGATCTTGGCCTT 59.995 52.381 3.32 0.00 0.00 4.35
1307 1411 0.622665 CTTGTCCTGGATCTTGGCCT 59.377 55.000 3.32 0.00 0.00 5.19
1308 1412 0.394899 CCTTGTCCTGGATCTTGGCC 60.395 60.000 0.00 0.00 0.00 5.36
1309 1413 0.620556 TCCTTGTCCTGGATCTTGGC 59.379 55.000 0.00 0.00 0.00 4.52
1310 1414 1.211457 CCTCCTTGTCCTGGATCTTGG 59.789 57.143 0.00 0.70 32.56 3.61
1311 1415 1.211457 CCCTCCTTGTCCTGGATCTTG 59.789 57.143 0.00 0.00 32.56 3.02
1312 1416 1.589414 CCCTCCTTGTCCTGGATCTT 58.411 55.000 0.00 0.00 32.56 2.40
1313 1417 0.985490 GCCCTCCTTGTCCTGGATCT 60.985 60.000 0.00 0.00 32.56 2.75
1314 1418 1.274703 TGCCCTCCTTGTCCTGGATC 61.275 60.000 0.00 0.00 32.56 3.36
1315 1419 0.625683 ATGCCCTCCTTGTCCTGGAT 60.626 55.000 0.00 0.00 32.56 3.41
1316 1420 0.846427 AATGCCCTCCTTGTCCTGGA 60.846 55.000 0.00 0.00 0.00 3.86
1317 1421 0.394899 GAATGCCCTCCTTGTCCTGG 60.395 60.000 0.00 0.00 0.00 4.45
1318 1422 0.394899 GGAATGCCCTCCTTGTCCTG 60.395 60.000 0.00 0.00 32.21 3.86
1319 1423 0.551131 AGGAATGCCCTCCTTGTCCT 60.551 55.000 0.00 0.00 43.76 3.85
1320 1424 2.002625 AGGAATGCCCTCCTTGTCC 58.997 57.895 0.00 0.00 43.76 4.02
1640 1744 1.536943 GGTGTCGGAGCTCTCAACCT 61.537 60.000 14.64 0.00 0.00 3.50
1641 1745 1.079750 GGTGTCGGAGCTCTCAACC 60.080 63.158 14.64 12.42 0.00 3.77
1642 1746 0.247736 ATGGTGTCGGAGCTCTCAAC 59.752 55.000 14.64 13.38 0.00 3.18
1643 1747 0.532573 GATGGTGTCGGAGCTCTCAA 59.467 55.000 14.64 0.00 0.00 3.02
1644 1748 1.657751 CGATGGTGTCGGAGCTCTCA 61.658 60.000 14.64 8.09 46.47 3.27
1645 1749 1.064946 CGATGGTGTCGGAGCTCTC 59.935 63.158 14.64 2.76 46.47 3.20
1713 1817 2.146342 CCAGCAAAGATGAGACGTTGT 58.854 47.619 0.00 0.00 33.29 3.32
1812 2391 0.608856 AGATTTGCATGCCACCACGA 60.609 50.000 16.68 0.00 0.00 4.35
1924 2969 3.411517 CTGGTCCGGGGGAATGCT 61.412 66.667 0.00 0.00 31.38 3.79
2087 3958 1.202486 ACAGACACAACGAACGACCAT 60.202 47.619 0.14 0.00 0.00 3.55
2120 4000 3.525537 AGACTGATGCGAACGATGAAAT 58.474 40.909 0.00 0.00 0.00 2.17
2141 4023 9.661563 ACTCGATAGTTCATTAAACCAACATAA 57.338 29.630 0.00 0.00 38.76 1.90
2222 4246 7.845066 AGATTTACCCGAAAGTTCACTTATC 57.155 36.000 0.00 0.00 34.61 1.75
2320 4345 3.950395 AGTAGGATCAAGCAAGCAATTCC 59.050 43.478 0.00 0.00 0.00 3.01
2384 4417 3.769739 ATAATCGGCAGCAGTATCCAA 57.230 42.857 0.00 0.00 0.00 3.53
2501 4559 2.941453 ATCTCGATGCAGTACACGTT 57.059 45.000 0.00 0.00 0.00 3.99
2653 4746 8.339344 TGAAAATAGAATCAAACAGCATGAGA 57.661 30.769 0.00 0.00 39.69 3.27
2722 4815 6.015350 TGGCTGTATATACTTCTAAGTCTGCC 60.015 42.308 13.89 16.10 40.28 4.85
2799 5285 5.499139 TCCGATTTGTATTTTCTCATGCC 57.501 39.130 0.00 0.00 0.00 4.40
2853 5341 9.472361 CAGAATGAATTTTCAGAACTCAAACAT 57.528 29.630 0.00 0.00 41.08 2.71
2877 5392 1.303643 GGTTTGGACCCCTCTGCAG 60.304 63.158 7.63 7.63 40.25 4.41
2931 5446 7.712639 GCTCAACTCAATCATCTCCAATTAGTA 59.287 37.037 0.00 0.00 0.00 1.82
3009 6768 5.277250 TCCCTCTGAACATCCATACACTTA 58.723 41.667 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.