Multiple sequence alignment - TraesCS2A01G408100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G408100 chr2A 100.000 3987 0 0 1 3987 665712762 665708776 0.000000e+00 7363.0
1 TraesCS2A01G408100 chr2A 78.191 188 29 7 1637 1818 4115529 4115710 4.210000e-20 110.0
2 TraesCS2A01G408100 chr2D 91.592 4020 148 74 65 3987 520528312 520524386 0.000000e+00 5376.0
3 TraesCS2A01G408100 chr2B 90.457 2798 111 56 65 2784 612691011 612688292 0.000000e+00 3544.0
4 TraesCS2A01G408100 chr2B 90.238 1219 76 18 2791 3987 612688252 612687055 0.000000e+00 1552.0
5 TraesCS2A01G408100 chr6B 87.770 139 15 2 1390 1526 708668041 708667903 1.150000e-35 161.0
6 TraesCS2A01G408100 chr1A 88.060 134 13 3 1398 1530 478567436 478567567 5.330000e-34 156.0
7 TraesCS2A01G408100 chr1A 91.262 103 9 0 1421 1523 370110215 370110113 1.490000e-29 141.0
8 TraesCS2A01G408100 chr1A 84.375 128 17 3 2655 2781 370109220 370109095 5.410000e-24 122.0
9 TraesCS2A01G408100 chr1A 96.667 60 2 0 1 60 51702808 51702867 2.540000e-17 100.0
10 TraesCS2A01G408100 chr1A 92.537 67 4 1 1 67 320769393 320769328 1.180000e-15 95.3
11 TraesCS2A01G408100 chr1D 87.313 134 14 3 1398 1530 377973950 377974081 2.480000e-32 150.0
12 TraesCS2A01G408100 chr1D 90.291 103 10 0 1421 1523 297538607 297538505 6.950000e-28 135.0
13 TraesCS2A01G408100 chr1D 82.979 141 19 5 2655 2794 297537610 297537474 5.410000e-24 122.0
14 TraesCS2A01G408100 chr6D 89.474 114 12 0 1413 1526 464737252 464737139 1.150000e-30 145.0
15 TraesCS2A01G408100 chr6A 88.596 114 13 0 1413 1526 611314563 611314450 5.370000e-29 139.0
16 TraesCS2A01G408100 chr3B 75.987 304 51 14 1523 1818 573475675 573475964 1.930000e-28 137.0
17 TraesCS2A01G408100 chr1B 87.500 120 7 4 1855 1966 599323421 599323540 8.990000e-27 132.0
18 TraesCS2A01G408100 chr1B 74.622 331 66 16 2655 2977 400312915 400312595 3.230000e-26 130.0
19 TraesCS2A01G408100 chr5B 87.611 113 6 4 1855 1959 586626455 586626343 1.500000e-24 124.0
20 TraesCS2A01G408100 chr5D 76.042 288 36 15 1552 1818 292676405 292676130 7.000000e-23 119.0
21 TraesCS2A01G408100 chr7A 96.667 60 2 0 1 60 124980058 124980117 2.540000e-17 100.0
22 TraesCS2A01G408100 chr7A 90.278 72 6 1 1 72 343175499 343175429 4.240000e-15 93.5
23 TraesCS2A01G408100 chr3A 98.246 57 1 0 4 60 431815547 431815491 2.540000e-17 100.0
24 TraesCS2A01G408100 chr3A 91.429 70 5 1 1 69 159997001 159997070 1.180000e-15 95.3
25 TraesCS2A01G408100 chr5A 93.846 65 4 0 1 65 46632459 46632395 9.120000e-17 99.0
26 TraesCS2A01G408100 chr5A 93.651 63 3 1 4 66 491585371 491585310 4.240000e-15 93.5
27 TraesCS2A01G408100 chr4D 93.651 63 4 0 1 63 484764591 484764653 1.180000e-15 95.3
28 TraesCS2A01G408100 chr7D 88.889 63 3 3 1880 1938 213041799 213041737 1.540000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G408100 chr2A 665708776 665712762 3986 True 7363 7363 100.0000 1 3987 1 chr2A.!!$R1 3986
1 TraesCS2A01G408100 chr2D 520524386 520528312 3926 True 5376 5376 91.5920 65 3987 1 chr2D.!!$R1 3922
2 TraesCS2A01G408100 chr2B 612687055 612691011 3956 True 2548 3544 90.3475 65 3987 2 chr2B.!!$R1 3922

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.036671 AAAGGCTAACGAACGGAGGG 60.037 55.0 0.00 0.00 0.00 4.30 F
869 925 0.250038 CCACCACCATCGCTATCCAG 60.250 60.0 0.00 0.00 0.00 3.86 F
1598 1681 0.252284 AACAGAGGACGTCCCCTGAT 60.252 55.0 42.15 32.25 36.49 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1506 0.036858 GCAGGAGCTTCGAGAACCTT 60.037 55.0 0.00 0.0 37.91 3.50 R
2772 2878 0.959867 TGTGGTGATCATGGTTGCCG 60.960 55.0 0.00 0.0 0.00 5.69 R
3184 3335 0.899720 AATGCAATGCAACTGAGGGG 59.100 50.0 13.45 0.0 43.62 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.817538 ACGGTCAAAGTTGAAACACG 57.182 45.000 0.00 2.00 39.21 4.49
21 22 1.399089 ACGGTCAAAGTTGAAACACGG 59.601 47.619 0.00 0.00 39.21 4.94
22 23 1.268335 CGGTCAAAGTTGAAACACGGG 60.268 52.381 0.00 0.00 39.21 5.28
23 24 1.066454 GGTCAAAGTTGAAACACGGGG 59.934 52.381 0.00 0.00 39.21 5.73
24 25 2.018515 GTCAAAGTTGAAACACGGGGA 58.981 47.619 0.00 0.00 39.21 4.81
25 26 2.621526 GTCAAAGTTGAAACACGGGGAT 59.378 45.455 0.00 0.00 39.21 3.85
26 27 3.816523 GTCAAAGTTGAAACACGGGGATA 59.183 43.478 0.00 0.00 39.21 2.59
27 28 4.069304 TCAAAGTTGAAACACGGGGATAG 58.931 43.478 0.00 0.00 33.55 2.08
28 29 4.069304 CAAAGTTGAAACACGGGGATAGA 58.931 43.478 0.00 0.00 0.00 1.98
29 30 4.569719 AAGTTGAAACACGGGGATAGAT 57.430 40.909 0.00 0.00 0.00 1.98
30 31 3.873910 AGTTGAAACACGGGGATAGATG 58.126 45.455 0.00 0.00 0.00 2.90
31 32 3.517901 AGTTGAAACACGGGGATAGATGA 59.482 43.478 0.00 0.00 0.00 2.92
32 33 4.019681 AGTTGAAACACGGGGATAGATGAA 60.020 41.667 0.00 0.00 0.00 2.57
33 34 4.561500 TGAAACACGGGGATAGATGAAA 57.438 40.909 0.00 0.00 0.00 2.69
34 35 4.258543 TGAAACACGGGGATAGATGAAAC 58.741 43.478 0.00 0.00 0.00 2.78
35 36 3.992943 AACACGGGGATAGATGAAACA 57.007 42.857 0.00 0.00 0.00 2.83
36 37 3.261981 ACACGGGGATAGATGAAACAC 57.738 47.619 0.00 0.00 0.00 3.32
37 38 2.838202 ACACGGGGATAGATGAAACACT 59.162 45.455 0.00 0.00 0.00 3.55
38 39 4.028131 ACACGGGGATAGATGAAACACTA 58.972 43.478 0.00 0.00 0.00 2.74
39 40 4.142004 ACACGGGGATAGATGAAACACTAC 60.142 45.833 0.00 0.00 0.00 2.73
40 41 4.028131 ACGGGGATAGATGAAACACTACA 58.972 43.478 0.00 0.00 0.00 2.74
41 42 4.654262 ACGGGGATAGATGAAACACTACAT 59.346 41.667 0.00 0.00 0.00 2.29
42 43 5.130477 ACGGGGATAGATGAAACACTACATT 59.870 40.000 0.00 0.00 0.00 2.71
43 44 5.466728 CGGGGATAGATGAAACACTACATTG 59.533 44.000 0.00 0.00 0.00 2.82
44 45 6.357367 GGGGATAGATGAAACACTACATTGT 58.643 40.000 0.00 0.00 0.00 2.71
45 46 6.260936 GGGGATAGATGAAACACTACATTGTG 59.739 42.308 0.00 0.00 43.07 3.33
46 47 6.260936 GGGATAGATGAAACACTACATTGTGG 59.739 42.308 0.00 0.00 41.84 4.17
47 48 7.047891 GGATAGATGAAACACTACATTGTGGA 58.952 38.462 7.20 0.00 41.84 4.02
48 49 7.552687 GGATAGATGAAACACTACATTGTGGAA 59.447 37.037 7.20 0.00 41.84 3.53
49 50 9.113838 GATAGATGAAACACTACATTGTGGAAT 57.886 33.333 7.20 0.00 41.84 3.01
50 51 7.149569 AGATGAAACACTACATTGTGGAATG 57.850 36.000 7.20 0.00 44.11 2.67
51 52 5.703978 TGAAACACTACATTGTGGAATGG 57.296 39.130 7.20 0.00 43.00 3.16
52 53 5.380900 TGAAACACTACATTGTGGAATGGA 58.619 37.500 7.20 0.00 43.00 3.41
56 57 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
57 58 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
58 59 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
59 60 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
60 61 3.054361 ACATTGTGGAATGGAGGGAGTAC 60.054 47.826 0.00 0.00 43.00 2.73
61 62 1.580059 TGTGGAATGGAGGGAGTACC 58.420 55.000 0.00 0.00 40.67 3.34
62 63 5.918976 CATTGTGGAATGGAGGGAGTACCT 61.919 50.000 0.00 0.00 40.58 3.08
63 64 6.636139 CATTGTGGAATGGAGGGAGTACCTA 61.636 48.000 0.00 0.00 40.77 3.08
97 98 0.036671 AAAGGCTAACGAACGGAGGG 60.037 55.000 0.00 0.00 0.00 4.30
100 101 2.098831 GCTAACGAACGGAGGGTGC 61.099 63.158 0.00 0.00 0.00 5.01
158 161 2.657102 CTTCCATGGAGAGCGAGGGC 62.657 65.000 15.53 0.00 40.37 5.19
186 189 0.805711 AAATAATGGCGGCTTTGCGC 60.806 50.000 18.73 0.00 35.06 6.09
203 220 4.548513 CGGAGGGGGAGAGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
204 221 4.179599 GGAGGGGGAGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
205 222 4.179599 GAGGGGGAGAGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
296 316 2.346365 GCGAGGACGGTTCCCTTT 59.654 61.111 0.00 0.00 44.10 3.11
298 318 1.079336 CGAGGACGGTTCCCTTTCC 60.079 63.158 0.00 0.00 44.10 3.13
302 323 1.497716 AGGACGGTTCCCTTTCCTTTT 59.502 47.619 0.00 0.00 44.10 2.27
303 324 2.091499 AGGACGGTTCCCTTTCCTTTTT 60.091 45.455 0.00 0.00 44.10 1.94
348 377 1.891919 TCGCCATTATTGCTCCGGC 60.892 57.895 0.00 0.00 39.45 6.13
349 378 2.639286 GCCATTATTGCTCCGGCG 59.361 61.111 0.00 0.00 42.25 6.46
435 465 3.630148 CACGCGGCCGCTAATGAG 61.630 66.667 43.60 30.33 39.32 2.90
436 466 4.891727 ACGCGGCCGCTAATGAGG 62.892 66.667 43.60 29.61 39.32 3.86
437 467 4.891727 CGCGGCCGCTAATGAGGT 62.892 66.667 43.60 0.00 39.32 3.85
438 468 3.272334 GCGGCCGCTAATGAGGTG 61.272 66.667 41.71 1.52 38.26 4.00
439 469 3.272334 CGGCCGCTAATGAGGTGC 61.272 66.667 14.67 0.00 35.46 5.01
440 470 2.902343 GGCCGCTAATGAGGTGCC 60.902 66.667 0.00 0.00 35.46 5.01
441 471 3.272334 GCCGCTAATGAGGTGCCG 61.272 66.667 0.00 0.00 35.46 5.69
442 472 3.272334 CCGCTAATGAGGTGCCGC 61.272 66.667 0.00 0.00 0.00 6.53
531 582 1.862123 GCACGTGATCATATGCCCG 59.138 57.895 22.23 10.42 31.71 6.13
602 653 6.041069 AGTGATACTCCTAGTTGGATTACTGC 59.959 42.308 0.00 0.00 45.16 4.40
686 741 4.785453 GGCGGCAGTGAGGGAAGG 62.785 72.222 3.07 0.00 0.00 3.46
687 742 4.785453 GCGGCAGTGAGGGAAGGG 62.785 72.222 0.00 0.00 0.00 3.95
688 743 3.003173 CGGCAGTGAGGGAAGGGA 61.003 66.667 0.00 0.00 0.00 4.20
828 884 0.815734 ATGTTCCGACTCCTACACCG 59.184 55.000 0.00 0.00 0.00 4.94
831 887 3.834799 CCGACTCCTACACCGCCC 61.835 72.222 0.00 0.00 0.00 6.13
833 889 4.509737 GACTCCTACACCGCCCGC 62.510 72.222 0.00 0.00 0.00 6.13
868 924 1.829456 CCACCACCATCGCTATCCA 59.171 57.895 0.00 0.00 0.00 3.41
869 925 0.250038 CCACCACCATCGCTATCCAG 60.250 60.000 0.00 0.00 0.00 3.86
881 937 2.808202 CGCTATCCAGTTCCCATTCCTG 60.808 54.545 0.00 0.00 0.00 3.86
977 1046 2.431942 CGTGAACTAAGCGGCCGT 60.432 61.111 28.70 10.76 0.00 5.68
1057 1126 3.130160 AGTCCGACTACGCCGACC 61.130 66.667 0.00 0.00 38.29 4.79
1092 1161 4.899239 CCCCTCGACCATCAGCGC 62.899 72.222 0.00 0.00 0.00 5.92
1425 1506 2.039480 AGAGTTGCAGCTGATGAAGGAA 59.961 45.455 20.43 0.00 0.00 3.36
1434 1515 2.675348 GCTGATGAAGGAAAGGTTCTCG 59.325 50.000 0.00 0.00 0.00 4.04
1547 1628 3.545124 AATCAAGCACGCCCGTCCA 62.545 57.895 0.00 0.00 0.00 4.02
1548 1629 4.980805 TCAAGCACGCCCGTCCAC 62.981 66.667 0.00 0.00 0.00 4.02
1555 1636 3.273834 CGCCCGTCCACGTTTGTT 61.274 61.111 0.00 0.00 37.74 2.83
1560 1641 0.306533 CCGTCCACGTTTGTTTGGAG 59.693 55.000 0.00 0.00 42.75 3.86
1571 1654 6.016943 CACGTTTGTTTGGAGGAGGTTAATTA 60.017 38.462 0.00 0.00 0.00 1.40
1598 1681 0.252284 AACAGAGGACGTCCCCTGAT 60.252 55.000 42.15 32.25 36.49 2.90
1600 1683 1.033574 CAGAGGACGTCCCCTGATAC 58.966 60.000 35.53 16.33 36.49 2.24
1601 1684 0.927767 AGAGGACGTCCCCTGATACT 59.072 55.000 30.82 9.91 36.49 2.12
1602 1685 1.133730 AGAGGACGTCCCCTGATACTC 60.134 57.143 30.82 18.38 36.49 2.59
1603 1686 0.927767 AGGACGTCCCCTGATACTCT 59.072 55.000 30.82 5.32 34.68 3.24
1604 1687 1.033574 GGACGTCCCCTGATACTCTG 58.966 60.000 24.75 0.00 0.00 3.35
1605 1688 1.409802 GGACGTCCCCTGATACTCTGA 60.410 57.143 24.75 0.00 0.00 3.27
1606 1689 2.588620 GACGTCCCCTGATACTCTGAT 58.411 52.381 3.51 0.00 0.00 2.90
1607 1690 3.498121 GGACGTCCCCTGATACTCTGATA 60.498 52.174 24.75 0.00 0.00 2.15
1608 1691 3.754323 GACGTCCCCTGATACTCTGATAG 59.246 52.174 3.51 0.00 0.00 2.08
1657 1740 1.896660 GTTTTCGGGAGCTGCCACA 60.897 57.895 25.24 6.97 38.95 4.17
1846 1936 5.227569 ACATACAACTTCCATGTCACTGA 57.772 39.130 0.00 0.00 32.27 3.41
1847 1937 5.809001 ACATACAACTTCCATGTCACTGAT 58.191 37.500 0.00 0.00 32.27 2.90
1848 1938 5.645067 ACATACAACTTCCATGTCACTGATG 59.355 40.000 0.00 0.00 32.27 3.07
1865 1967 4.217118 ACTGATGACAAAGCATTCTGGTTC 59.783 41.667 0.00 0.00 37.04 3.62
1919 2021 3.695022 CTACGTCAACCTCCCGGCG 62.695 68.421 0.00 0.00 0.00 6.46
1995 2097 1.718396 GCCTTCCAAGAATTTGCTGC 58.282 50.000 0.00 0.00 32.79 5.25
2343 2445 3.580319 AAGGTGGGTCAGGGTGGC 61.580 66.667 0.00 0.00 0.00 5.01
2344 2446 4.918360 AGGTGGGTCAGGGTGGCA 62.918 66.667 0.00 0.00 0.00 4.92
2345 2447 4.351054 GGTGGGTCAGGGTGGCAG 62.351 72.222 0.00 0.00 0.00 4.85
2493 2599 1.969064 CATGTCGTTCCCGGGCAAA 60.969 57.895 18.49 2.08 33.95 3.68
2527 2633 3.972971 CTGCTGGACTGCCTGGAGC 62.973 68.421 0.00 0.00 42.76 4.70
2529 2635 2.268280 CTGGACTGCCTGGAGCTG 59.732 66.667 0.00 0.00 44.23 4.24
2772 2878 3.365364 GCAAGATACAGCACAACAAGGTC 60.365 47.826 0.00 0.00 0.00 3.85
2809 2948 3.558505 CACACCAAAGCTTTTCGATCTG 58.441 45.455 9.53 0.00 0.00 2.90
2812 2951 4.520492 ACACCAAAGCTTTTCGATCTGATT 59.480 37.500 9.53 0.00 0.00 2.57
2829 2968 5.559770 TCTGATTACAGGCTTGAATTGTGA 58.440 37.500 1.40 0.00 43.60 3.58
2830 2969 6.003326 TCTGATTACAGGCTTGAATTGTGAA 58.997 36.000 1.40 0.00 43.60 3.18
2861 3003 5.413523 TGATGTGATGAATCTGTTCTTGTGG 59.586 40.000 0.00 0.00 35.33 4.17
2862 3004 3.503363 TGTGATGAATCTGTTCTTGTGGC 59.497 43.478 0.00 0.00 35.33 5.01
2981 3126 1.009449 GAGTCGGCGAGGAAGATCG 60.009 63.158 11.20 0.00 45.48 3.69
2995 3140 5.732633 AGGAAGATCGGATGATGATCATTC 58.267 41.667 10.14 6.50 43.73 2.67
3008 3153 1.876156 GATCATTCGTTCATCCTGCCC 59.124 52.381 0.00 0.00 0.00 5.36
3052 3197 3.508744 CCAAAATGCTGGTCCATACAC 57.491 47.619 0.00 0.00 0.00 2.90
3092 3237 6.317789 ACATTATGCCATAACATGTAGTGC 57.682 37.500 0.00 0.40 0.00 4.40
3175 3326 3.364549 CTTGGGGCTACATTCATTCCAA 58.635 45.455 0.00 0.00 0.00 3.53
3184 3335 2.701951 ACATTCATTCCAATCCCATGGC 59.298 45.455 6.09 0.00 40.46 4.40
3206 3357 2.416836 CCCTCAGTTGCATTGCATTCTG 60.417 50.000 25.19 25.19 38.76 3.02
3266 3419 5.545063 TGTCACTTGTGAATGTTCCTCTA 57.455 39.130 4.93 0.00 0.00 2.43
3271 3424 8.467598 GTCACTTGTGAATGTTCCTCTAGTATA 58.532 37.037 4.93 0.00 0.00 1.47
3419 3585 6.539173 ACAATCTATACACACCCAAACTCAA 58.461 36.000 0.00 0.00 0.00 3.02
3420 3586 7.175104 ACAATCTATACACACCCAAACTCAAT 58.825 34.615 0.00 0.00 0.00 2.57
3421 3587 7.336931 ACAATCTATACACACCCAAACTCAATC 59.663 37.037 0.00 0.00 0.00 2.67
3438 3605 5.128499 ACTCAATCTCCTATTCTCACACCTG 59.872 44.000 0.00 0.00 0.00 4.00
3493 3660 6.151144 AGCATAACCAAACAATTCCTAGTGTC 59.849 38.462 0.00 0.00 29.99 3.67
3512 3679 6.068010 AGTGTCTGGAACCACATTTATTCAA 58.932 36.000 0.00 0.00 33.99 2.69
3568 3736 5.957842 AAAAACTGTTATTCGCTCCATCA 57.042 34.783 0.00 0.00 0.00 3.07
3569 3737 5.957842 AAAACTGTTATTCGCTCCATCAA 57.042 34.783 0.00 0.00 0.00 2.57
3570 3738 5.957842 AAACTGTTATTCGCTCCATCAAA 57.042 34.783 0.00 0.00 0.00 2.69
3572 3740 5.551760 ACTGTTATTCGCTCCATCAAAAG 57.448 39.130 0.00 0.00 0.00 2.27
3615 3786 8.484214 TGATGAACTGCCTAACTCTATAATCT 57.516 34.615 0.00 0.00 0.00 2.40
3645 3816 9.230122 TGAGATCTCATCTATCATACTCACTTC 57.770 37.037 21.67 0.00 40.38 3.01
3650 3821 8.845227 TCTCATCTATCATACTCACTTCACTTC 58.155 37.037 0.00 0.00 0.00 3.01
3671 3843 7.342284 CACTTCTCCTTACCTCCTTATAACAGA 59.658 40.741 0.00 0.00 0.00 3.41
3672 3844 8.068733 ACTTCTCCTTACCTCCTTATAACAGAT 58.931 37.037 0.00 0.00 0.00 2.90
3681 3853 5.180868 CCTCCTTATAACAGATCATTGCTGC 59.819 44.000 0.00 0.00 36.86 5.25
3689 3861 2.290916 CAGATCATTGCTGCATCCTCAC 59.709 50.000 1.84 0.00 0.00 3.51
3690 3862 1.607628 GATCATTGCTGCATCCTCACC 59.392 52.381 1.84 0.00 0.00 4.02
3691 3863 0.622136 TCATTGCTGCATCCTCACCT 59.378 50.000 1.84 0.00 0.00 4.00
3700 3872 4.039730 GCTGCATCCTCACCTTCTCTATAA 59.960 45.833 0.00 0.00 0.00 0.98
3711 3883 9.495572 CTCACCTTCTCTATAAAAGAAAACACT 57.504 33.333 0.42 0.00 32.60 3.55
3715 3887 8.233190 CCTTCTCTATAAAAGAAAACACTGCTG 58.767 37.037 0.00 0.00 32.60 4.41
3791 3964 0.965439 CAAAAGGCCGGGTTTGATCA 59.035 50.000 19.17 0.00 36.96 2.92
3793 3966 0.611896 AAAGGCCGGGTTTGATCAGG 60.612 55.000 2.18 0.00 0.00 3.86
3799 3972 2.944094 GCCGGGTTTGATCAGGTGTAAT 60.944 50.000 2.18 0.00 0.00 1.89
3826 3999 7.720442 TCATGGATGACTACAAAGATCTACAG 58.280 38.462 0.00 0.00 0.00 2.74
3895 4068 4.104579 AGCATACCATCCCACACATCAATA 59.895 41.667 0.00 0.00 0.00 1.90
3907 4080 3.367932 ACACATCAATAACAGCGTCTTCG 59.632 43.478 0.00 0.00 40.37 3.79
3916 4089 4.210304 GCGTCTTCGGCATCGCAC 62.210 66.667 0.00 0.00 46.40 5.34
3970 4143 3.334583 TTCAGCACCACCTCATCTAAC 57.665 47.619 0.00 0.00 0.00 2.34
3972 4145 1.066858 CAGCACCACCTCATCTAACGT 60.067 52.381 0.00 0.00 0.00 3.99
3983 4156 5.826208 ACCTCATCTAACGTTTTTGGAGTTT 59.174 36.000 5.91 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.608546 CCGTGTTTCAACTTTGACCGTA 59.391 45.455 0.00 0.00 36.83 4.02
1 2 1.399089 CCGTGTTTCAACTTTGACCGT 59.601 47.619 0.00 0.00 36.83 4.83
2 3 1.268335 CCCGTGTTTCAACTTTGACCG 60.268 52.381 0.00 0.00 36.83 4.79
3 4 1.066454 CCCCGTGTTTCAACTTTGACC 59.934 52.381 0.00 0.00 36.83 4.02
4 5 2.018515 TCCCCGTGTTTCAACTTTGAC 58.981 47.619 0.00 0.00 36.83 3.18
5 6 2.421751 TCCCCGTGTTTCAACTTTGA 57.578 45.000 0.00 0.00 34.92 2.69
6 7 4.069304 TCTATCCCCGTGTTTCAACTTTG 58.931 43.478 0.00 0.00 0.00 2.77
7 8 4.360951 TCTATCCCCGTGTTTCAACTTT 57.639 40.909 0.00 0.00 0.00 2.66
8 9 4.019681 TCATCTATCCCCGTGTTTCAACTT 60.020 41.667 0.00 0.00 0.00 2.66
9 10 3.517901 TCATCTATCCCCGTGTTTCAACT 59.482 43.478 0.00 0.00 0.00 3.16
10 11 3.869065 TCATCTATCCCCGTGTTTCAAC 58.131 45.455 0.00 0.00 0.00 3.18
11 12 4.561500 TTCATCTATCCCCGTGTTTCAA 57.438 40.909 0.00 0.00 0.00 2.69
12 13 4.258543 GTTTCATCTATCCCCGTGTTTCA 58.741 43.478 0.00 0.00 0.00 2.69
13 14 4.094442 GTGTTTCATCTATCCCCGTGTTTC 59.906 45.833 0.00 0.00 0.00 2.78
14 15 4.007659 GTGTTTCATCTATCCCCGTGTTT 58.992 43.478 0.00 0.00 0.00 2.83
15 16 3.263425 AGTGTTTCATCTATCCCCGTGTT 59.737 43.478 0.00 0.00 0.00 3.32
16 17 2.838202 AGTGTTTCATCTATCCCCGTGT 59.162 45.455 0.00 0.00 0.00 4.49
17 18 3.543680 AGTGTTTCATCTATCCCCGTG 57.456 47.619 0.00 0.00 0.00 4.94
18 19 4.028131 TGTAGTGTTTCATCTATCCCCGT 58.972 43.478 0.00 0.00 0.00 5.28
19 20 4.665833 TGTAGTGTTTCATCTATCCCCG 57.334 45.455 0.00 0.00 0.00 5.73
20 21 6.260936 CACAATGTAGTGTTTCATCTATCCCC 59.739 42.308 0.00 0.00 34.83 4.81
21 22 6.260936 CCACAATGTAGTGTTTCATCTATCCC 59.739 42.308 0.00 0.00 37.82 3.85
22 23 7.047891 TCCACAATGTAGTGTTTCATCTATCC 58.952 38.462 0.00 0.00 37.82 2.59
23 24 8.492673 TTCCACAATGTAGTGTTTCATCTATC 57.507 34.615 0.00 0.00 37.82 2.08
24 25 8.896744 CATTCCACAATGTAGTGTTTCATCTAT 58.103 33.333 0.00 0.00 37.82 1.98
25 26 7.336679 CCATTCCACAATGTAGTGTTTCATCTA 59.663 37.037 0.00 0.00 38.22 1.98
26 27 6.151648 CCATTCCACAATGTAGTGTTTCATCT 59.848 38.462 0.00 0.00 38.22 2.90
27 28 6.150976 TCCATTCCACAATGTAGTGTTTCATC 59.849 38.462 0.00 0.00 38.22 2.92
28 29 6.009589 TCCATTCCACAATGTAGTGTTTCAT 58.990 36.000 0.00 0.00 38.22 2.57
29 30 5.380900 TCCATTCCACAATGTAGTGTTTCA 58.619 37.500 0.00 0.00 38.22 2.69
30 31 5.106157 CCTCCATTCCACAATGTAGTGTTTC 60.106 44.000 0.00 0.00 38.22 2.78
31 32 4.766891 CCTCCATTCCACAATGTAGTGTTT 59.233 41.667 0.00 0.00 38.22 2.83
32 33 4.335416 CCTCCATTCCACAATGTAGTGTT 58.665 43.478 0.00 0.00 38.22 3.32
33 34 3.308402 CCCTCCATTCCACAATGTAGTGT 60.308 47.826 0.00 0.00 38.22 3.55
34 35 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
35 36 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
36 37 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
37 38 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
38 39 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
39 40 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
40 41 2.509964 GGTACTCCCTCCATTCCACAAT 59.490 50.000 0.00 0.00 0.00 2.71
41 42 1.913419 GGTACTCCCTCCATTCCACAA 59.087 52.381 0.00 0.00 0.00 3.33
42 43 1.080498 AGGTACTCCCTCCATTCCACA 59.920 52.381 0.00 0.00 40.71 4.17
43 44 1.880941 AGGTACTCCCTCCATTCCAC 58.119 55.000 0.00 0.00 40.71 4.02
44 45 2.590611 AGTAGGTACTCCCTCCATTCCA 59.409 50.000 0.00 0.00 44.81 3.53
45 46 3.331718 AGTAGGTACTCCCTCCATTCC 57.668 52.381 0.00 0.00 44.81 3.01
46 47 5.064314 ACTAGTAGGTACTCCCTCCATTC 57.936 47.826 1.45 0.00 44.81 2.67
47 48 5.675884 ACTACTAGTAGGTACTCCCTCCATT 59.324 44.000 29.05 4.74 44.81 3.16
48 49 5.233939 ACTACTAGTAGGTACTCCCTCCAT 58.766 45.833 29.05 5.14 44.81 3.41
49 50 4.639731 ACTACTAGTAGGTACTCCCTCCA 58.360 47.826 29.05 0.00 44.81 3.86
50 51 6.328934 AACTACTACTAGTAGGTACTCCCTCC 59.671 46.154 29.05 0.00 46.26 4.30
51 52 7.216494 CAACTACTACTAGTAGGTACTCCCTC 58.784 46.154 29.05 0.00 46.38 4.30
52 53 6.409120 GCAACTACTACTAGTAGGTACTCCCT 60.409 46.154 29.05 11.63 46.38 4.20
53 54 5.762711 GCAACTACTACTAGTAGGTACTCCC 59.237 48.000 29.05 11.38 46.38 4.30
54 55 6.352516 TGCAACTACTACTAGTAGGTACTCC 58.647 44.000 29.05 15.60 46.38 3.85
55 56 7.856145 TTGCAACTACTACTAGTAGGTACTC 57.144 40.000 29.05 15.68 46.38 2.59
56 57 7.338957 CCTTTGCAACTACTACTAGTAGGTACT 59.661 40.741 29.05 13.88 46.38 2.73
57 58 7.479150 CCTTTGCAACTACTACTAGTAGGTAC 58.521 42.308 29.05 14.04 46.38 3.34
58 59 6.096001 GCCTTTGCAACTACTACTAGTAGGTA 59.904 42.308 29.05 18.55 46.38 3.08
60 61 5.127356 AGCCTTTGCAACTACTACTAGTAGG 59.873 44.000 29.05 17.08 45.27 3.18
61 62 6.210287 AGCCTTTGCAACTACTACTAGTAG 57.790 41.667 25.30 25.30 45.85 2.57
62 63 7.542025 GTTAGCCTTTGCAACTACTACTAGTA 58.458 38.462 0.00 1.89 41.13 1.82
63 64 6.396450 GTTAGCCTTTGCAACTACTACTAGT 58.604 40.000 0.00 0.00 41.13 2.57
70 71 3.663493 CGTTCGTTAGCCTTTGCAACTAC 60.663 47.826 0.00 0.00 41.13 2.73
104 105 4.135153 CTCCTCGTCCCCTGCACG 62.135 72.222 0.00 0.00 38.67 5.34
105 106 2.680352 TCTCCTCGTCCCCTGCAC 60.680 66.667 0.00 0.00 0.00 4.57
106 107 2.363018 CTCTCCTCGTCCCCTGCA 60.363 66.667 0.00 0.00 0.00 4.41
107 108 1.258445 TTTCTCTCCTCGTCCCCTGC 61.258 60.000 0.00 0.00 0.00 4.85
158 161 2.726633 CCGCCATTATTTTACCTTGCG 58.273 47.619 0.00 0.00 40.38 4.85
186 189 4.548513 CCTCCCTCTCCCCCTCCG 62.549 77.778 0.00 0.00 0.00 4.63
191 208 1.686060 TATTCCCCCTCCCTCTCCCC 61.686 65.000 0.00 0.00 0.00 4.81
192 209 0.474079 GTATTCCCCCTCCCTCTCCC 60.474 65.000 0.00 0.00 0.00 4.30
193 210 0.832559 CGTATTCCCCCTCCCTCTCC 60.833 65.000 0.00 0.00 0.00 3.71
194 211 0.187851 TCGTATTCCCCCTCCCTCTC 59.812 60.000 0.00 0.00 0.00 3.20
195 212 0.868186 ATCGTATTCCCCCTCCCTCT 59.132 55.000 0.00 0.00 0.00 3.69
196 213 1.268066 GATCGTATTCCCCCTCCCTC 58.732 60.000 0.00 0.00 0.00 4.30
197 214 0.542232 CGATCGTATTCCCCCTCCCT 60.542 60.000 7.03 0.00 0.00 4.20
198 215 1.542187 CCGATCGTATTCCCCCTCCC 61.542 65.000 15.09 0.00 0.00 4.30
199 216 1.542187 CCCGATCGTATTCCCCCTCC 61.542 65.000 15.09 0.00 0.00 4.30
200 217 1.972978 CCCGATCGTATTCCCCCTC 59.027 63.158 15.09 0.00 0.00 4.30
201 218 2.214920 GCCCGATCGTATTCCCCCT 61.215 63.158 15.09 0.00 0.00 4.79
202 219 2.346365 GCCCGATCGTATTCCCCC 59.654 66.667 15.09 0.00 0.00 5.40
203 220 1.301479 GTGCCCGATCGTATTCCCC 60.301 63.158 15.09 0.00 0.00 4.81
204 221 0.963962 TAGTGCCCGATCGTATTCCC 59.036 55.000 15.09 0.00 0.00 3.97
205 222 2.607187 CATAGTGCCCGATCGTATTCC 58.393 52.381 15.09 0.00 0.00 3.01
206 223 1.993370 GCATAGTGCCCGATCGTATTC 59.007 52.381 15.09 2.11 37.42 1.75
302 323 2.551504 GGACGGCCAAAGGTAGAAGAAA 60.552 50.000 0.00 0.00 0.00 2.52
303 324 1.002773 GGACGGCCAAAGGTAGAAGAA 59.997 52.381 0.00 0.00 0.00 2.52
307 328 0.611618 TACGGACGGCCAAAGGTAGA 60.612 55.000 8.76 0.00 0.00 2.59
309 330 0.903942 ATTACGGACGGCCAAAGGTA 59.096 50.000 8.76 0.00 0.00 3.08
310 331 0.675522 CATTACGGACGGCCAAAGGT 60.676 55.000 8.76 0.00 0.00 3.50
440 470 3.124921 CCCCTAAACACCGCAGCG 61.125 66.667 8.18 8.18 0.00 5.18
441 471 2.750237 CCCCCTAAACACCGCAGC 60.750 66.667 0.00 0.00 0.00 5.25
482 522 4.034742 ACAACTTGCTTAACACACTAACGG 59.965 41.667 0.00 0.00 0.00 4.44
602 653 0.040425 GCAACAACTTACTGCCACCG 60.040 55.000 0.00 0.00 0.00 4.94
677 732 1.602237 GTGCGATTCCCTTCCCTCA 59.398 57.895 0.00 0.00 0.00 3.86
686 741 2.101835 TAAACGGGCGTGCGATTCC 61.102 57.895 0.00 0.00 0.00 3.01
687 742 1.059838 GTAAACGGGCGTGCGATTC 59.940 57.895 0.00 0.00 0.00 2.52
688 743 2.392974 GGTAAACGGGCGTGCGATT 61.393 57.895 0.00 0.00 0.00 3.34
816 872 4.509737 GCGGGCGGTGTAGGAGTC 62.510 72.222 0.00 0.00 0.00 3.36
831 887 2.743928 GCAGTGGAGGACAAGGCG 60.744 66.667 0.00 0.00 0.00 5.52
833 889 2.743928 GCGCAGTGGAGGACAAGG 60.744 66.667 0.30 0.00 0.00 3.61
834 890 2.743928 GGCGCAGTGGAGGACAAG 60.744 66.667 10.83 0.00 0.00 3.16
835 891 3.555324 TGGCGCAGTGGAGGACAA 61.555 61.111 10.83 0.00 0.00 3.18
836 892 4.314440 GTGGCGCAGTGGAGGACA 62.314 66.667 10.83 0.00 0.00 4.02
868 924 1.000396 GCAGGCAGGAATGGGAACT 60.000 57.895 0.00 0.00 0.00 3.01
869 925 2.054453 GGCAGGCAGGAATGGGAAC 61.054 63.158 0.00 0.00 0.00 3.62
891 947 0.994241 CGCCGAGTGATCGATCGAAG 60.994 60.000 23.50 11.11 41.40 3.79
892 948 1.010013 CGCCGAGTGATCGATCGAA 60.010 57.895 23.50 3.14 41.40 3.71
893 949 2.631984 CGCCGAGTGATCGATCGA 59.368 61.111 21.86 21.86 41.40 3.59
894 950 3.094058 GCGCCGAGTGATCGATCG 61.094 66.667 20.03 9.36 38.65 3.69
895 951 3.094058 CGCGCCGAGTGATCGATC 61.094 66.667 18.72 18.72 34.64 3.69
1425 1506 0.036858 GCAGGAGCTTCGAGAACCTT 60.037 55.000 0.00 0.00 37.91 3.50
1528 1609 2.480555 GACGGGCGTGCTTGATTG 59.519 61.111 0.00 0.00 0.00 2.67
1547 1628 2.430248 AACCTCCTCCAAACAAACGT 57.570 45.000 0.00 0.00 0.00 3.99
1548 1629 5.447624 AATTAACCTCCTCCAAACAAACG 57.552 39.130 0.00 0.00 0.00 3.60
1550 1631 6.904463 GGTAATTAACCTCCTCCAAACAAA 57.096 37.500 0.00 0.00 45.75 2.83
1571 1654 1.614413 GACGTCCTCTGTTCTCTTGGT 59.386 52.381 3.51 0.00 0.00 3.67
1576 1659 1.891616 GGGGACGTCCTCTGTTCTC 59.108 63.158 32.52 14.08 32.35 2.87
1668 1751 1.743252 CTTCTTCTCCACCGGCAGC 60.743 63.158 0.00 0.00 0.00 5.25
1793 1876 3.417069 TGGTGGTGATGTTTCGATTCT 57.583 42.857 0.00 0.00 0.00 2.40
1846 1936 4.147321 ACAGAACCAGAATGCTTTGTCAT 58.853 39.130 0.00 0.00 31.97 3.06
1847 1937 3.554934 ACAGAACCAGAATGCTTTGTCA 58.445 40.909 0.00 0.00 31.97 3.58
1848 1938 3.565482 TGACAGAACCAGAATGCTTTGTC 59.435 43.478 0.00 0.00 34.51 3.18
1850 1940 3.057736 CCTGACAGAACCAGAATGCTTTG 60.058 47.826 3.32 0.00 33.65 2.77
1851 1941 3.152341 CCTGACAGAACCAGAATGCTTT 58.848 45.455 3.32 0.00 33.65 3.51
1852 1942 2.107204 ACCTGACAGAACCAGAATGCTT 59.893 45.455 3.32 0.00 33.65 3.91
1865 1967 1.448540 GGTCGCCATCACCTGACAG 60.449 63.158 0.00 0.00 33.04 3.51
1960 2062 2.472909 GGCGCGAAGGAGGAAATGG 61.473 63.158 12.10 0.00 0.00 3.16
1995 2097 4.701956 AATCAAATTAAGCCCACGTGAG 57.298 40.909 19.30 4.39 0.00 3.51
2335 2437 2.115910 TTTGAGGCTGCCACCCTG 59.884 61.111 22.65 0.00 31.41 4.45
2336 2438 2.116125 GTTTGAGGCTGCCACCCT 59.884 61.111 22.65 0.00 34.77 4.34
2339 2441 1.973812 GGAGGTTTGAGGCTGCCAC 60.974 63.158 22.65 15.93 0.00 5.01
2343 2445 2.747855 GCGGGAGGTTTGAGGCTG 60.748 66.667 0.00 0.00 0.00 4.85
2344 2446 4.035102 GGCGGGAGGTTTGAGGCT 62.035 66.667 0.00 0.00 0.00 4.58
2345 2447 3.645268 ATGGCGGGAGGTTTGAGGC 62.645 63.158 0.00 0.00 0.00 4.70
2493 2599 2.017559 GCAGGTACTCCGGCGAGAAT 62.018 60.000 9.30 0.00 44.00 2.40
2527 2633 2.202362 CTCGTGCTCCGACGACAG 60.202 66.667 0.00 0.00 43.26 3.51
2772 2878 0.959867 TGTGGTGATCATGGTTGCCG 60.960 55.000 0.00 0.00 0.00 5.69
2809 2948 8.538409 AATTTTCACAATTCAAGCCTGTAATC 57.462 30.769 0.00 0.00 0.00 1.75
2812 2951 7.224362 CACAAATTTTCACAATTCAAGCCTGTA 59.776 33.333 0.00 0.00 0.00 2.74
2829 2968 9.199982 GAACAGATTCATCACATCACAAATTTT 57.800 29.630 0.00 0.00 34.70 1.82
2830 2969 8.582437 AGAACAGATTCATCACATCACAAATTT 58.418 29.630 0.00 0.00 37.29 1.82
3008 3153 3.391382 GGTCCAGGTCCAGGTCCG 61.391 72.222 0.83 0.00 0.00 4.79
3052 3197 6.567701 GCATAATGTACATATTGTTGGACGGG 60.568 42.308 9.21 0.00 32.77 5.28
3092 3237 7.087639 GCTGCTATCTTCCATTAGTGTACTAG 58.912 42.308 0.00 0.00 0.00 2.57
3175 3326 1.623686 AACTGAGGGGCCATGGGAT 60.624 57.895 15.13 0.00 0.00 3.85
3184 3335 0.899720 AATGCAATGCAACTGAGGGG 59.100 50.000 13.45 0.00 43.62 4.79
3206 3357 5.300034 TCTTTGGCATCCATTGTCATGATAC 59.700 40.000 0.00 0.00 40.31 2.24
3266 3419 1.285962 GCCCATGCCCATCCATATACT 59.714 52.381 0.00 0.00 0.00 2.12
3301 3458 2.983229 ACTCTGGTGAATCATGTCAGC 58.017 47.619 8.21 8.21 44.52 4.26
3419 3585 5.519808 TGTACAGGTGTGAGAATAGGAGAT 58.480 41.667 0.00 0.00 0.00 2.75
3420 3586 4.930696 TGTACAGGTGTGAGAATAGGAGA 58.069 43.478 0.00 0.00 0.00 3.71
3421 3587 4.440802 GCTGTACAGGTGTGAGAATAGGAG 60.441 50.000 23.95 0.00 0.00 3.69
3438 3605 3.563808 TCACTTGATGTTGTTGGCTGTAC 59.436 43.478 0.00 0.00 0.00 2.90
3512 3679 5.357257 CCGGTGCTGTTAGTTGTATAATCT 58.643 41.667 0.00 0.00 0.00 2.40
3645 3816 7.342284 TCTGTTATAAGGAGGTAAGGAGAAGTG 59.658 40.741 0.00 0.00 0.00 3.16
3650 3821 7.841282 TGATCTGTTATAAGGAGGTAAGGAG 57.159 40.000 0.00 0.00 0.00 3.69
3671 3843 1.214673 AGGTGAGGATGCAGCAATGAT 59.785 47.619 3.51 0.00 38.68 2.45
3672 3844 0.622136 AGGTGAGGATGCAGCAATGA 59.378 50.000 3.51 0.00 38.68 2.57
3681 3853 9.672673 TTTTCTTTTATAGAGAAGGTGAGGATG 57.327 33.333 2.22 0.00 34.84 3.51
3689 3861 8.233190 CAGCAGTGTTTTCTTTTATAGAGAAGG 58.767 37.037 0.00 0.00 34.84 3.46
3690 3862 8.993121 TCAGCAGTGTTTTCTTTTATAGAGAAG 58.007 33.333 0.00 0.00 34.84 2.85
3691 3863 8.902540 TCAGCAGTGTTTTCTTTTATAGAGAA 57.097 30.769 0.00 0.00 33.51 2.87
3760 3933 1.411074 GGCCTTTTGGTAGTATGGGGG 60.411 57.143 0.00 0.00 42.99 5.40
3761 3934 1.749286 CGGCCTTTTGGTAGTATGGGG 60.749 57.143 0.00 0.00 42.99 4.96
3769 3942 0.185416 TCAAACCCGGCCTTTTGGTA 59.815 50.000 16.85 1.75 42.99 3.25
3791 3964 6.957631 TGTAGTCATCCATGAAATTACACCT 58.042 36.000 0.00 0.00 38.75 4.00
3793 3966 8.946085 TCTTTGTAGTCATCCATGAAATTACAC 58.054 33.333 0.00 0.00 38.75 2.90
3799 3972 8.539544 TGTAGATCTTTGTAGTCATCCATGAAA 58.460 33.333 0.00 0.00 38.75 2.69
3826 3999 6.675026 GGTATTTGACCTGTGGTTTTAAGAC 58.325 40.000 0.00 0.00 45.89 3.01
3895 4068 2.094659 CGATGCCGAAGACGCTGTT 61.095 57.895 0.00 0.00 38.22 3.16
3907 4080 3.195698 GACCTTCGGTGCGATGCC 61.196 66.667 0.00 0.00 35.25 4.40
3916 4089 2.186903 CCGTGGATGGACCTTCGG 59.813 66.667 1.51 0.00 44.31 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.