Multiple sequence alignment - TraesCS2A01G407400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G407400 chr2A 100.000 4851 0 0 1 4851 662965252 662970102 0.000000e+00 8959.0
1 TraesCS2A01G407400 chr2D 96.537 2772 79 10 2 2764 518806035 518808798 0.000000e+00 4571.0
2 TraesCS2A01G407400 chr2D 92.649 1374 40 10 2878 4193 518808968 518810338 0.000000e+00 1921.0
3 TraesCS2A01G407400 chr2D 86.606 545 39 17 4314 4850 518810426 518810944 5.450000e-159 571.0
4 TraesCS2A01G407400 chr2B 96.793 1840 49 3 938 2771 611063076 611064911 0.000000e+00 3062.0
5 TraesCS2A01G407400 chr2B 91.930 1363 71 20 2878 4206 611064910 611066267 0.000000e+00 1871.0
6 TraesCS2A01G407400 chr2B 95.296 744 34 1 5 748 611062020 611062762 0.000000e+00 1179.0
7 TraesCS2A01G407400 chr2B 89.912 684 58 6 2076 2759 612073306 612072634 0.000000e+00 870.0
8 TraesCS2A01G407400 chr2B 89.912 684 58 6 2076 2759 612079622 612078950 0.000000e+00 870.0
9 TraesCS2A01G407400 chr2B 89.808 520 29 12 4338 4851 611066264 611066765 0.000000e+00 645.0
10 TraesCS2A01G407400 chr2B 88.268 537 51 6 3114 3641 612072335 612071802 2.460000e-177 632.0
11 TraesCS2A01G407400 chr2B 88.268 537 51 6 3114 3641 612078651 612078118 2.460000e-177 632.0
12 TraesCS2A01G407400 chr2B 88.621 290 17 8 3708 3991 612071778 612071499 6.010000e-89 339.0
13 TraesCS2A01G407400 chr2B 88.621 290 17 8 3708 3991 612078094 612077815 6.010000e-89 339.0
14 TraesCS2A01G407400 chr2B 90.404 198 14 1 1848 2040 612073498 612073301 6.230000e-64 255.0
15 TraesCS2A01G407400 chr2B 90.404 198 14 1 1848 2040 612079814 612079617 6.230000e-64 255.0
16 TraesCS2A01G407400 chr2B 95.139 144 7 0 744 887 611062820 611062963 1.360000e-55 228.0
17 TraesCS2A01G407400 chr2B 87.413 143 11 5 4204 4340 455464181 455464322 1.810000e-34 158.0
18 TraesCS2A01G407400 chr2B 85.621 153 11 3 1576 1727 612073695 612073553 3.020000e-32 150.0
19 TraesCS2A01G407400 chr2B 85.621 153 11 3 1576 1727 612080011 612079869 3.020000e-32 150.0
20 TraesCS2A01G407400 chr2B 76.623 154 21 9 3 149 612081125 612080980 2.420000e-08 71.3
21 TraesCS2A01G407400 chr5D 91.781 146 10 1 4197 4340 448096824 448096679 8.230000e-48 202.0
22 TraesCS2A01G407400 chr5D 96.190 105 4 0 2776 2880 498029516 498029412 6.460000e-39 172.0
23 TraesCS2A01G407400 chr3B 90.845 142 8 2 4204 4340 3604462 3604603 8.290000e-43 185.0
24 TraesCS2A01G407400 chr3B 90.845 142 8 2 4204 4340 5231737 5231596 8.290000e-43 185.0
25 TraesCS2A01G407400 chr3B 90.400 125 8 2 2755 2879 532666305 532666425 1.400000e-35 161.0
26 TraesCS2A01G407400 chr3B 89.313 131 9 4 2771 2901 34228519 34228394 5.030000e-35 159.0
27 TraesCS2A01G407400 chr3B 88.550 131 10 4 2771 2901 34128212 34128087 2.340000e-33 154.0
28 TraesCS2A01G407400 chr3B 88.550 131 10 4 2771 2901 34173015 34172890 2.340000e-33 154.0
29 TraesCS2A01G407400 chr3B 84.722 144 14 7 4203 4341 771471007 771471147 2.350000e-28 137.0
30 TraesCS2A01G407400 chr3B 84.722 144 14 7 4203 4341 771495235 771495375 2.350000e-28 137.0
31 TraesCS2A01G407400 chr7B 89.726 146 11 3 4197 4340 100043669 100043812 2.980000e-42 183.0
32 TraesCS2A01G407400 chr5B 90.647 139 11 2 4203 4340 578545886 578545749 2.980000e-42 183.0
33 TraesCS2A01G407400 chr4B 88.742 151 12 3 4195 4340 54291403 54291553 3.860000e-41 180.0
34 TraesCS2A01G407400 chr4D 96.262 107 4 0 2773 2879 10986224 10986118 4.990000e-40 176.0
35 TraesCS2A01G407400 chr6A 95.327 107 5 0 2773 2879 8620861 8620967 2.320000e-38 171.0
36 TraesCS2A01G407400 chr7D 94.444 108 6 0 2772 2879 5522186 5522293 3.000000e-37 167.0
37 TraesCS2A01G407400 chr7A 87.970 133 11 5 2769 2900 101275375 101275247 8.410000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G407400 chr2A 662965252 662970102 4850 False 8959.000000 8959 100.000000 1 4851 1 chr2A.!!$F1 4850
1 TraesCS2A01G407400 chr2D 518806035 518810944 4909 False 2354.333333 4571 91.930667 2 4850 3 chr2D.!!$F1 4848
2 TraesCS2A01G407400 chr2B 611062020 611066765 4745 False 1397.000000 3062 93.793200 5 4851 5 chr2B.!!$F2 4846
3 TraesCS2A01G407400 chr2B 612071499 612073695 2196 True 449.200000 870 88.565200 1576 3991 5 chr2B.!!$R1 2415
4 TraesCS2A01G407400 chr2B 612077815 612081125 3310 True 386.216667 870 86.574833 3 3991 6 chr2B.!!$R2 3988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 420 0.247814 CACTGATTGCATTCGTCGGC 60.248 55.0 4.27 0.00 0.00 5.54 F
920 1077 0.526524 GACCGCGTCTCTGAAGATGG 60.527 60.0 4.92 0.00 38.72 3.51 F
1115 1368 0.541392 ATAATGTCCGACCAGCAGCA 59.459 50.0 0.00 0.00 0.00 4.41 F
2580 2864 0.613853 ATCCAAGTCGTCGAGGGGAA 60.614 55.0 12.00 0.00 0.00 3.97 F
2789 3235 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 2139 0.320421 GCTTAGCCACAACACCGAGA 60.320 55.0 0.00 0.0 0.00 4.04 R
2770 3216 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.0 15.34 0.0 46.06 2.73 R
2771 3217 0.890683 TTTCCGAACGGAGGGAGTAC 59.109 55.0 15.34 0.0 46.06 2.73 R
3490 4062 0.112412 TTTTCTTCTGAGGGCCACCC 59.888 55.0 6.18 0.0 45.90 4.61 R
4594 5220 0.801251 GAGCATTTTCACTCGCAGCT 59.199 50.0 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
363 417 1.398390 GACCCACTGATTGCATTCGTC 59.602 52.381 4.27 1.94 0.00 4.20
366 420 0.247814 CACTGATTGCATTCGTCGGC 60.248 55.000 4.27 0.00 0.00 5.54
378 432 1.131826 CGTCGGCGTTTTCATGGAC 59.868 57.895 6.85 0.00 0.00 4.02
470 524 3.210528 GAGAGGCCATGCTGCTGC 61.211 66.667 5.01 8.89 40.20 5.25
555 609 4.142534 CCCAGTGTCATGTTTCATCATCAC 60.143 45.833 0.00 0.00 0.00 3.06
561 615 1.838112 TGTTTCATCATCACCTGGCC 58.162 50.000 0.00 0.00 0.00 5.36
623 677 2.890916 TTCGATTGAAGACGAAGCGCG 61.891 52.381 0.00 0.00 42.21 6.86
634 688 2.357034 AAGCGCGTGGTGTTCGAT 60.357 55.556 8.43 0.00 0.00 3.59
647 701 2.346545 GTGTTCGATGGTAAAGCGGTAC 59.653 50.000 0.00 0.00 0.00 3.34
682 736 4.819105 TTCCGTCAGTATGGATTGTTCT 57.181 40.909 0.00 0.00 40.59 3.01
684 738 4.755411 TCCGTCAGTATGGATTGTTCTTC 58.245 43.478 0.00 0.00 35.77 2.87
904 1061 4.693566 TGAAGTGTCAATTTCCGTATGACC 59.306 41.667 3.01 0.00 42.12 4.02
920 1077 0.526524 GACCGCGTCTCTGAAGATGG 60.527 60.000 4.92 0.00 38.72 3.51
962 1175 4.968788 GCTTTACGTATCCTACACTCGAAG 59.031 45.833 0.00 0.00 0.00 3.79
1115 1368 0.541392 ATAATGTCCGACCAGCAGCA 59.459 50.000 0.00 0.00 0.00 4.41
1131 1388 3.655211 CAGCCCAGCACCCTCCTT 61.655 66.667 0.00 0.00 0.00 3.36
1215 1478 3.411517 CTCCACATCCCCGCCCTT 61.412 66.667 0.00 0.00 0.00 3.95
1759 2038 1.271856 TGTATTGGAGGGACGCAAGA 58.728 50.000 0.00 0.00 43.62 3.02
2382 2666 2.514824 GAAGGGGACATGGCGCTC 60.515 66.667 16.14 5.79 0.00 5.03
2571 2855 4.336889 TCTGACTGAAAATCCAAGTCGT 57.663 40.909 0.00 0.00 32.68 4.34
2580 2864 0.613853 ATCCAAGTCGTCGAGGGGAA 60.614 55.000 12.00 0.00 0.00 3.97
2715 2999 6.887002 TCAGCTCAGTTCTTCAGATACTAAGA 59.113 38.462 0.00 0.00 0.00 2.10
2722 3006 8.410141 CAGTTCTTCAGATACTAAGAGGTAAGG 58.590 40.741 0.00 0.00 33.49 2.69
2730 3014 7.655328 CAGATACTAAGAGGTAAGGCTTCAATG 59.345 40.741 1.30 0.00 0.00 2.82
2736 3020 5.923204 AGAGGTAAGGCTTCAATGTGATAG 58.077 41.667 1.30 0.00 0.00 2.08
2781 3227 8.376270 ACATTTTTGCTATATAGTACTCCCTCC 58.624 37.037 11.38 0.00 0.00 4.30
2782 3228 6.585695 TTTTGCTATATAGTACTCCCTCCG 57.414 41.667 11.38 0.00 0.00 4.63
2783 3229 4.923516 TGCTATATAGTACTCCCTCCGT 57.076 45.455 11.38 0.00 0.00 4.69
2784 3230 5.252586 TGCTATATAGTACTCCCTCCGTT 57.747 43.478 11.38 0.00 0.00 4.44
2785 3231 5.251764 TGCTATATAGTACTCCCTCCGTTC 58.748 45.833 11.38 0.00 0.00 3.95
2786 3232 4.332268 GCTATATAGTACTCCCTCCGTTCG 59.668 50.000 11.38 0.00 0.00 3.95
2787 3233 1.978454 ATAGTACTCCCTCCGTTCGG 58.022 55.000 0.00 4.74 0.00 4.30
2788 3234 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
2789 3235 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2790 3236 0.890683 GTACTCCCTCCGTTCGGAAA 59.109 55.000 14.79 3.49 33.41 3.13
2791 3237 1.479730 GTACTCCCTCCGTTCGGAAAT 59.520 52.381 14.79 2.39 33.41 2.17
2792 3238 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
2793 3239 1.479730 ACTCCCTCCGTTCGGAAATAC 59.520 52.381 14.79 0.00 33.41 1.89
2794 3240 1.755380 CTCCCTCCGTTCGGAAATACT 59.245 52.381 14.79 0.00 33.41 2.12
2795 3241 2.167900 CTCCCTCCGTTCGGAAATACTT 59.832 50.000 14.79 0.00 33.41 2.24
2796 3242 2.093869 TCCCTCCGTTCGGAAATACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2797 3243 2.354403 CCCTCCGTTCGGAAATACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2798 3244 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2799 3245 2.597305 CTCCGTTCGGAAATACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2800 3246 1.060122 CCGTTCGGAAATACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2801 3247 1.060122 CGTTCGGAAATACTTGTCGCC 59.940 52.381 0.00 0.00 0.00 5.54
2802 3248 2.070783 GTTCGGAAATACTTGTCGCCA 58.929 47.619 0.00 0.00 0.00 5.69
2803 3249 2.459060 TCGGAAATACTTGTCGCCAA 57.541 45.000 0.00 0.00 0.00 4.52
2804 3250 2.768698 TCGGAAATACTTGTCGCCAAA 58.231 42.857 0.00 0.00 0.00 3.28
2805 3251 3.139850 TCGGAAATACTTGTCGCCAAAA 58.860 40.909 0.00 0.00 0.00 2.44
2806 3252 3.754323 TCGGAAATACTTGTCGCCAAAAT 59.246 39.130 0.00 0.00 0.00 1.82
2807 3253 3.851403 CGGAAATACTTGTCGCCAAAATG 59.149 43.478 0.00 0.00 0.00 2.32
2808 3254 4.173256 GGAAATACTTGTCGCCAAAATGG 58.827 43.478 0.00 0.00 41.55 3.16
2809 3255 4.082463 GGAAATACTTGTCGCCAAAATGGA 60.082 41.667 0.00 0.00 40.96 3.41
2810 3256 5.394115 GGAAATACTTGTCGCCAAAATGGAT 60.394 40.000 0.00 0.00 40.96 3.41
2811 3257 4.637483 ATACTTGTCGCCAAAATGGATG 57.363 40.909 0.00 0.00 40.96 3.51
2812 3258 2.238521 ACTTGTCGCCAAAATGGATGT 58.761 42.857 0.00 0.00 40.96 3.06
2813 3259 3.417101 ACTTGTCGCCAAAATGGATGTA 58.583 40.909 0.00 0.00 40.96 2.29
2814 3260 4.016444 ACTTGTCGCCAAAATGGATGTAT 58.984 39.130 0.00 0.00 40.96 2.29
2815 3261 4.096382 ACTTGTCGCCAAAATGGATGTATC 59.904 41.667 0.00 0.00 40.96 2.24
2816 3262 3.884895 TGTCGCCAAAATGGATGTATCT 58.115 40.909 0.00 0.00 40.96 1.98
2817 3263 5.029807 TGTCGCCAAAATGGATGTATCTA 57.970 39.130 0.00 0.00 40.96 1.98
2818 3264 5.056480 TGTCGCCAAAATGGATGTATCTAG 58.944 41.667 0.00 0.00 40.96 2.43
2819 3265 5.163353 TGTCGCCAAAATGGATGTATCTAGA 60.163 40.000 0.00 0.00 40.96 2.43
2820 3266 5.758296 GTCGCCAAAATGGATGTATCTAGAA 59.242 40.000 0.00 0.00 40.96 2.10
2821 3267 5.758296 TCGCCAAAATGGATGTATCTAGAAC 59.242 40.000 0.00 0.00 40.96 3.01
2822 3268 5.760253 CGCCAAAATGGATGTATCTAGAACT 59.240 40.000 0.00 0.00 40.96 3.01
2823 3269 6.929049 CGCCAAAATGGATGTATCTAGAACTA 59.071 38.462 0.00 0.00 40.96 2.24
2824 3270 7.441157 CGCCAAAATGGATGTATCTAGAACTAA 59.559 37.037 0.00 0.00 40.96 2.24
2825 3271 9.120538 GCCAAAATGGATGTATCTAGAACTAAA 57.879 33.333 0.00 0.00 40.96 1.85
2854 3300 9.046296 ACATCTAGATACATTCATTTTTCCGAC 57.954 33.333 4.54 0.00 0.00 4.79
2855 3301 9.045223 CATCTAGATACATTCATTTTTCCGACA 57.955 33.333 4.54 0.00 0.00 4.35
2856 3302 9.613428 ATCTAGATACATTCATTTTTCCGACAA 57.387 29.630 2.53 0.00 0.00 3.18
2857 3303 9.098355 TCTAGATACATTCATTTTTCCGACAAG 57.902 33.333 0.00 0.00 0.00 3.16
2858 3304 7.687941 AGATACATTCATTTTTCCGACAAGT 57.312 32.000 0.00 0.00 0.00 3.16
2859 3305 8.786826 AGATACATTCATTTTTCCGACAAGTA 57.213 30.769 0.00 0.00 0.00 2.24
2860 3306 9.396022 AGATACATTCATTTTTCCGACAAGTAT 57.604 29.630 0.00 0.00 0.00 2.12
2863 3309 8.742554 ACATTCATTTTTCCGACAAGTATTTC 57.257 30.769 0.00 0.00 0.00 2.17
2864 3310 7.812669 ACATTCATTTTTCCGACAAGTATTTCC 59.187 33.333 0.00 0.00 0.00 3.13
2865 3311 6.885952 TCATTTTTCCGACAAGTATTTCCA 57.114 33.333 0.00 0.00 0.00 3.53
2866 3312 7.278461 TCATTTTTCCGACAAGTATTTCCAA 57.722 32.000 0.00 0.00 0.00 3.53
2867 3313 7.717568 TCATTTTTCCGACAAGTATTTCCAAA 58.282 30.769 0.00 0.00 0.00 3.28
2868 3314 7.650104 TCATTTTTCCGACAAGTATTTCCAAAC 59.350 33.333 0.00 0.00 0.00 2.93
2869 3315 4.735662 TTCCGACAAGTATTTCCAAACG 57.264 40.909 0.00 0.00 0.00 3.60
2870 3316 3.068560 TCCGACAAGTATTTCCAAACGG 58.931 45.455 0.00 0.00 39.30 4.44
2871 3317 3.068560 CCGACAAGTATTTCCAAACGGA 58.931 45.455 0.00 0.00 40.16 4.69
2872 3318 3.124636 CCGACAAGTATTTCCAAACGGAG 59.875 47.826 0.00 0.00 40.16 4.63
2873 3319 3.124636 CGACAAGTATTTCCAAACGGAGG 59.875 47.826 0.00 0.00 32.88 4.30
2874 3320 3.418047 ACAAGTATTTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
2875 3321 3.073356 ACAAGTATTTCCAAACGGAGGGA 59.927 43.478 0.00 0.00 32.88 4.20
2876 3322 3.629142 AGTATTTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
2930 3379 6.095580 TCTCGCAACTGATTACTAGAACAGAT 59.904 38.462 0.00 0.00 34.88 2.90
2947 3406 5.209818 ACAGATTCTTAGTTCCGTTCACA 57.790 39.130 0.00 0.00 0.00 3.58
2949 3408 6.931838 ACAGATTCTTAGTTCCGTTCACATA 58.068 36.000 0.00 0.00 0.00 2.29
2967 3426 4.565166 CACATAGGCAATTGCACTGAAATG 59.435 41.667 30.32 23.01 44.36 2.32
2968 3427 4.221262 ACATAGGCAATTGCACTGAAATGT 59.779 37.500 30.32 23.53 44.36 2.71
2969 3428 3.034721 AGGCAATTGCACTGAAATGTG 57.965 42.857 30.32 0.00 44.36 3.21
2984 3451 8.720562 CACTGAAATGTGTAGTGTTCATTCATA 58.279 33.333 0.00 0.00 37.59 2.15
3036 3528 9.586435 AAAATGGTTTCTGTCTAAAAAGTGAAG 57.414 29.630 0.00 0.00 0.00 3.02
3172 3735 2.021355 CTGTTGGAGCATCTGGAGAC 57.979 55.000 0.00 0.00 33.73 3.36
3490 4062 1.815003 GCCATTCTGAAGGTGGAACTG 59.185 52.381 12.99 0.00 36.74 3.16
3777 4351 0.325602 ATTAAGGCGGACCGGAACAA 59.674 50.000 17.22 0.00 42.76 2.83
3847 4421 2.378547 ACCCCAACCTTCTGCTAAATCA 59.621 45.455 0.00 0.00 0.00 2.57
3931 4505 9.301153 GTTGTCTTTGTTGTTCAATCATACTTT 57.699 29.630 0.00 0.00 35.84 2.66
3963 4537 2.199208 TCATTTGGATGGAGCCTCTCA 58.801 47.619 0.00 0.00 33.93 3.27
4058 4634 4.423732 GCATCCAAATTTGCGTAACATCT 58.576 39.130 12.92 0.00 0.00 2.90
4111 4730 5.147032 TGAAGAAGGTTGTTCAAATGGGAT 58.853 37.500 0.04 0.00 37.49 3.85
4140 4759 1.242076 AGCTGGTGTGCATGAACTTC 58.758 50.000 5.18 0.00 34.99 3.01
4146 4766 4.650734 TGGTGTGCATGAACTTCAGATAA 58.349 39.130 5.18 0.00 0.00 1.75
4149 4769 6.032094 GGTGTGCATGAACTTCAGATAATTG 58.968 40.000 5.18 0.00 0.00 2.32
4153 4773 8.358895 TGTGCATGAACTTCAGATAATTGAAAA 58.641 29.630 5.18 0.00 36.69 2.29
4155 4775 8.030692 TGCATGAACTTCAGATAATTGAAAAGG 58.969 33.333 0.00 0.00 36.69 3.11
4215 4835 5.638133 TGCTTATATACTACTCCCTCCGTT 58.362 41.667 0.00 0.00 0.00 4.44
4216 4836 6.073314 TGCTTATATACTACTCCCTCCGTTT 58.927 40.000 0.00 0.00 0.00 3.60
4217 4837 6.208204 TGCTTATATACTACTCCCTCCGTTTC 59.792 42.308 0.00 0.00 0.00 2.78
4218 4838 6.433716 GCTTATATACTACTCCCTCCGTTTCT 59.566 42.308 0.00 0.00 0.00 2.52
4224 4844 8.953223 ATACTACTCCCTCCGTTTCTAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
4230 4850 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
4232 4852 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
4233 4853 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
4234 4854 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
4251 4871 9.787532 TTGTCTTTCTAAAGATTTCAACAAGTG 57.212 29.630 8.31 0.00 45.83 3.16
4252 4872 9.173021 TGTCTTTCTAAAGATTTCAACAAGTGA 57.827 29.630 8.31 0.00 45.83 3.41
4253 4873 9.439537 GTCTTTCTAAAGATTTCAACAAGTGAC 57.560 33.333 8.31 0.00 45.83 3.67
4254 4874 9.396022 TCTTTCTAAAGATTTCAACAAGTGACT 57.604 29.630 1.00 0.00 39.95 3.41
4292 4916 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
4301 4925 9.607988 ACATCCGTATGTGATAGTTCATTTAAA 57.392 29.630 0.00 0.00 44.79 1.52
4356 4980 6.727394 AGGGAGTACAAGTTTATTTGGCATA 58.273 36.000 0.00 0.00 32.32 3.14
4403 5027 2.481289 TGGCCATGAATCGTGTAACA 57.519 45.000 0.00 0.00 35.74 2.41
4406 5030 2.009774 GCCATGAATCGTGTAACAGCT 58.990 47.619 1.46 0.00 35.74 4.24
4469 5094 1.101331 CAAGGATCAGCCAGCCTTTC 58.899 55.000 0.00 0.00 39.91 2.62
4476 5101 1.154688 AGCCAGCCTTTCCTTTGCT 59.845 52.632 0.00 0.00 35.25 3.91
4482 5107 1.683385 AGCCTTTCCTTTGCTGTGTTC 59.317 47.619 0.00 0.00 33.23 3.18
4483 5108 1.408702 GCCTTTCCTTTGCTGTGTTCA 59.591 47.619 0.00 0.00 0.00 3.18
4485 5110 3.493176 GCCTTTCCTTTGCTGTGTTCATT 60.493 43.478 0.00 0.00 0.00 2.57
4486 5111 4.053295 CCTTTCCTTTGCTGTGTTCATTG 58.947 43.478 0.00 0.00 0.00 2.82
4487 5112 3.731652 TTCCTTTGCTGTGTTCATTGG 57.268 42.857 0.00 0.00 0.00 3.16
4521 5147 1.466950 GCAGCAATTGTACGCCTAACA 59.533 47.619 7.40 0.00 0.00 2.41
4583 5209 4.624364 TGTGTGCTCAGTGCCCCG 62.624 66.667 0.00 0.00 42.00 5.73
4594 5220 0.988832 AGTGCCCCGGTCTTTGAATA 59.011 50.000 0.00 0.00 0.00 1.75
4611 5237 3.181507 TGAATAGCTGCGAGTGAAAATGC 60.182 43.478 0.00 0.00 0.00 3.56
4621 5247 3.370366 CGAGTGAAAATGCTCCTCTTCAG 59.630 47.826 0.00 0.00 0.00 3.02
4627 5255 2.977772 ATGCTCCTCTTCAGTAGCAC 57.022 50.000 0.00 0.00 46.84 4.40
4654 5282 1.434696 GCAGGCAGCGCATGTTTAT 59.565 52.632 11.47 0.00 42.60 1.40
4668 5296 6.018262 GCGCATGTTTATAGATACCAGAACAA 60.018 38.462 0.30 0.00 31.69 2.83
4752 5380 7.748683 CAGTGTAAAATGCTTTGCGAGTAAATA 59.251 33.333 0.00 0.00 30.36 1.40
4843 5471 5.299279 TCCTTTCCACATCAAACAAGACTTC 59.701 40.000 0.00 0.00 0.00 3.01
4844 5472 5.067674 CCTTTCCACATCAAACAAGACTTCA 59.932 40.000 0.00 0.00 0.00 3.02
4845 5473 5.756195 TTCCACATCAAACAAGACTTCAG 57.244 39.130 0.00 0.00 0.00 3.02
4847 5475 5.436175 TCCACATCAAACAAGACTTCAGAA 58.564 37.500 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 205 1.078759 GGAACTCGATCACACGCTGG 61.079 60.000 0.00 0.00 0.00 4.85
363 417 2.696759 GGGGTCCATGAAAACGCCG 61.697 63.158 11.31 0.00 38.52 6.46
366 420 2.084546 GAGAAGGGGTCCATGAAAACG 58.915 52.381 0.00 0.00 0.00 3.60
378 432 1.339438 CCATATGCATCCGAGAAGGGG 60.339 57.143 0.19 0.00 41.52 4.79
487 541 2.709475 CGCTCGGGCTTACATTGC 59.291 61.111 5.36 0.00 36.09 3.56
489 543 1.815421 CTGCGCTCGGGCTTACATT 60.815 57.895 9.73 0.00 36.09 2.71
555 609 0.545071 ATCCCAAAACAAGGGCCAGG 60.545 55.000 6.18 0.00 46.36 4.45
561 615 3.324556 ACCATGTTGATCCCAAAACAAGG 59.675 43.478 13.44 13.44 45.93 3.61
623 677 1.127951 CGCTTTACCATCGAACACCAC 59.872 52.381 0.00 0.00 0.00 4.16
634 688 0.945265 GCACACGTACCGCTTTACCA 60.945 55.000 0.00 0.00 0.00 3.25
647 701 2.158645 TGACGGAAAATATGTGCACACG 59.841 45.455 24.37 20.86 0.00 4.49
682 736 6.612247 TTTGTTACTTCAGAATGCTTCGAA 57.388 33.333 0.00 0.00 34.76 3.71
684 738 7.858052 AAATTTGTTACTTCAGAATGCTTCG 57.142 32.000 0.00 0.00 34.76 3.79
783 904 5.762179 AGGTTTCTGATCACACCATTCTA 57.238 39.130 13.91 0.00 0.00 2.10
837 958 6.142139 TCACATTATTCAGCGTGTTCAAAAG 58.858 36.000 0.00 0.00 0.00 2.27
879 1000 5.178623 GTCATACGGAAATTGACACTTCACA 59.821 40.000 0.00 0.00 39.59 3.58
904 1061 2.561733 TTACCATCTTCAGAGACGCG 57.438 50.000 3.53 3.53 33.99 6.01
920 1077 1.402325 GCAGGGCGGTTTGTGAATTAC 60.402 52.381 0.00 0.00 0.00 1.89
962 1175 1.349234 CAAAGCAGCCAATTTACGCC 58.651 50.000 0.00 0.00 0.00 5.68
1089 1342 2.028484 TCGGACATTATCGCCGGC 59.972 61.111 19.07 19.07 44.87 6.13
1090 1343 1.663702 GGTCGGACATTATCGCCGG 60.664 63.158 10.76 0.00 44.87 6.13
1091 1344 0.939577 CTGGTCGGACATTATCGCCG 60.940 60.000 10.76 0.00 46.08 6.46
1097 1350 0.108186 CTGCTGCTGGTCGGACATTA 60.108 55.000 10.76 0.00 0.00 1.90
1115 1368 3.334054 GAAGGAGGGTGCTGGGCT 61.334 66.667 0.00 0.00 0.00 5.19
1131 1388 4.798682 GGAAGGGAGGCGAGGGGA 62.799 72.222 0.00 0.00 0.00 4.81
1150 1407 0.033796 GGGGTAGGGTTAGGGTTTGC 60.034 60.000 0.00 0.00 0.00 3.68
1213 1476 2.362120 CTTGCTGGGGCTGGGAAG 60.362 66.667 0.00 0.00 39.59 3.46
1377 1655 4.547367 GTGAGGGAATCCGCCGGG 62.547 72.222 1.90 0.00 38.33 5.73
1860 2139 0.320421 GCTTAGCCACAACACCGAGA 60.320 55.000 0.00 0.00 0.00 4.04
2247 2531 1.378762 GGCCTGTACAAGCCTTCCA 59.621 57.895 25.43 0.00 46.14 3.53
2571 2855 3.583086 AGAACAGAAAGAATTCCCCTCGA 59.417 43.478 0.65 0.00 36.12 4.04
2580 2864 9.050601 GTTGCATAGCTATAGAACAGAAAGAAT 57.949 33.333 5.77 0.00 0.00 2.40
2715 2999 5.700402 ACTATCACATTGAAGCCTTACCT 57.300 39.130 0.00 0.00 0.00 3.08
2722 3006 9.049523 TGATGATAGAAACTATCACATTGAAGC 57.950 33.333 19.26 3.56 36.84 3.86
2769 3215 0.911769 TCCGAACGGAGGGAGTACTA 59.088 55.000 12.04 0.00 39.76 1.82
2770 3216 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
2771 3217 0.890683 TTTCCGAACGGAGGGAGTAC 59.109 55.000 15.34 0.00 46.06 2.73
2772 3218 1.856629 ATTTCCGAACGGAGGGAGTA 58.143 50.000 15.34 0.00 46.06 2.59
2773 3219 1.479730 GTATTTCCGAACGGAGGGAGT 59.520 52.381 15.34 1.96 46.06 3.85
2774 3220 1.755380 AGTATTTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2775 3221 1.856629 AGTATTTCCGAACGGAGGGA 58.143 50.000 15.34 7.17 46.06 4.20
2776 3222 2.277084 CAAGTATTTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2777 3223 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2778 3224 2.597305 CGACAAGTATTTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2779 3225 2.598589 CGACAAGTATTTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2780 3226 1.060122 GCGACAAGTATTTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
2781 3227 1.060122 GGCGACAAGTATTTCCGAACG 59.940 52.381 0.00 0.00 0.00 3.95
2782 3228 2.070783 TGGCGACAAGTATTTCCGAAC 58.929 47.619 0.00 0.00 37.44 3.95
2783 3229 2.459060 TGGCGACAAGTATTTCCGAA 57.541 45.000 0.00 0.00 37.44 4.30
2795 3241 3.884895 AGATACATCCATTTTGGCGACA 58.115 40.909 0.00 0.00 37.47 4.35
2796 3242 5.297547 TCTAGATACATCCATTTTGGCGAC 58.702 41.667 0.00 0.00 37.47 5.19
2797 3243 5.545063 TCTAGATACATCCATTTTGGCGA 57.455 39.130 0.00 0.00 37.47 5.54
2798 3244 5.760253 AGTTCTAGATACATCCATTTTGGCG 59.240 40.000 0.00 0.00 37.47 5.69
2799 3245 8.677148 TTAGTTCTAGATACATCCATTTTGGC 57.323 34.615 0.00 0.00 37.47 4.52
2828 3274 9.046296 GTCGGAAAAATGAATGTATCTAGATGT 57.954 33.333 15.79 0.00 0.00 3.06
2829 3275 9.045223 TGTCGGAAAAATGAATGTATCTAGATG 57.955 33.333 15.79 0.00 0.00 2.90
2830 3276 9.613428 TTGTCGGAAAAATGAATGTATCTAGAT 57.387 29.630 10.73 10.73 0.00 1.98
2831 3277 9.098355 CTTGTCGGAAAAATGAATGTATCTAGA 57.902 33.333 0.00 0.00 0.00 2.43
2832 3278 8.883731 ACTTGTCGGAAAAATGAATGTATCTAG 58.116 33.333 0.00 0.00 0.00 2.43
2833 3279 8.786826 ACTTGTCGGAAAAATGAATGTATCTA 57.213 30.769 0.00 0.00 0.00 1.98
2834 3280 7.687941 ACTTGTCGGAAAAATGAATGTATCT 57.312 32.000 0.00 0.00 0.00 1.98
2837 3283 9.834628 GAAATACTTGTCGGAAAAATGAATGTA 57.165 29.630 0.00 0.00 0.00 2.29
2838 3284 7.812669 GGAAATACTTGTCGGAAAAATGAATGT 59.187 33.333 0.00 0.00 0.00 2.71
2839 3285 7.812191 TGGAAATACTTGTCGGAAAAATGAATG 59.188 33.333 0.00 0.00 0.00 2.67
2840 3286 7.891561 TGGAAATACTTGTCGGAAAAATGAAT 58.108 30.769 0.00 0.00 0.00 2.57
2841 3287 7.278461 TGGAAATACTTGTCGGAAAAATGAA 57.722 32.000 0.00 0.00 0.00 2.57
2842 3288 6.885952 TGGAAATACTTGTCGGAAAAATGA 57.114 33.333 0.00 0.00 0.00 2.57
2843 3289 7.358023 CGTTTGGAAATACTTGTCGGAAAAATG 60.358 37.037 0.00 0.00 0.00 2.32
2844 3290 6.639279 CGTTTGGAAATACTTGTCGGAAAAAT 59.361 34.615 0.00 0.00 0.00 1.82
2845 3291 5.972382 CGTTTGGAAATACTTGTCGGAAAAA 59.028 36.000 0.00 0.00 0.00 1.94
2846 3292 5.505985 CCGTTTGGAAATACTTGTCGGAAAA 60.506 40.000 0.00 0.00 38.03 2.29
2847 3293 4.023878 CCGTTTGGAAATACTTGTCGGAAA 60.024 41.667 0.00 0.00 38.03 3.13
2848 3294 3.499157 CCGTTTGGAAATACTTGTCGGAA 59.501 43.478 0.00 0.00 38.03 4.30
2849 3295 3.068560 CCGTTTGGAAATACTTGTCGGA 58.931 45.455 0.00 0.00 38.03 4.55
2850 3296 3.068560 TCCGTTTGGAAATACTTGTCGG 58.931 45.455 0.00 0.00 42.85 4.79
2851 3297 3.124636 CCTCCGTTTGGAAATACTTGTCG 59.875 47.826 0.00 0.00 45.87 4.35
2852 3298 3.439129 CCCTCCGTTTGGAAATACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
2853 3299 3.073356 TCCCTCCGTTTGGAAATACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
2854 3300 3.681593 TCCCTCCGTTTGGAAATACTTG 58.318 45.455 0.00 0.00 45.87 3.16
2855 3301 3.329814 ACTCCCTCCGTTTGGAAATACTT 59.670 43.478 0.00 0.00 45.87 2.24
2856 3302 2.910977 ACTCCCTCCGTTTGGAAATACT 59.089 45.455 0.00 0.00 45.87 2.12
2857 3303 3.345508 ACTCCCTCCGTTTGGAAATAC 57.654 47.619 0.00 0.00 45.87 1.89
2858 3304 4.286549 TGTTACTCCCTCCGTTTGGAAATA 59.713 41.667 0.00 0.00 45.87 1.40
2859 3305 3.073356 TGTTACTCCCTCCGTTTGGAAAT 59.927 43.478 0.00 0.00 45.87 2.17
2860 3306 2.438763 TGTTACTCCCTCCGTTTGGAAA 59.561 45.455 0.00 0.00 45.87 3.13
2861 3307 2.038033 CTGTTACTCCCTCCGTTTGGAA 59.962 50.000 0.00 0.00 45.87 3.53
2862 3308 1.621814 CTGTTACTCCCTCCGTTTGGA 59.378 52.381 0.00 0.00 43.88 3.53
2863 3309 1.621814 TCTGTTACTCCCTCCGTTTGG 59.378 52.381 0.00 0.00 0.00 3.28
2864 3310 2.299297 ACTCTGTTACTCCCTCCGTTTG 59.701 50.000 0.00 0.00 0.00 2.93
2865 3311 2.606378 ACTCTGTTACTCCCTCCGTTT 58.394 47.619 0.00 0.00 0.00 3.60
2866 3312 2.305858 ACTCTGTTACTCCCTCCGTT 57.694 50.000 0.00 0.00 0.00 4.44
2867 3313 3.666345 ATACTCTGTTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
2868 3314 6.374894 CCTTATATACTCTGTTACTCCCTCCG 59.625 46.154 0.00 0.00 0.00 4.63
2869 3315 7.240167 ACCTTATATACTCTGTTACTCCCTCC 58.760 42.308 0.00 0.00 0.00 4.30
2870 3316 9.978336 ATACCTTATATACTCTGTTACTCCCTC 57.022 37.037 0.00 0.00 0.00 4.30
2909 3355 8.485976 AAGAATCTGTTCTAGTAATCAGTTGC 57.514 34.615 0.00 0.00 43.80 4.17
2930 3379 4.020928 TGCCTATGTGAACGGAACTAAGAA 60.021 41.667 0.00 0.00 0.00 2.52
2947 3406 4.221262 ACACATTTCAGTGCAATTGCCTAT 59.779 37.500 26.94 10.44 43.23 2.57
2949 3408 2.366266 ACACATTTCAGTGCAATTGCCT 59.634 40.909 26.94 19.64 43.23 4.75
2967 3426 8.487313 TGGTACAATATGAATGAACACTACAC 57.513 34.615 0.00 0.00 31.92 2.90
3036 3528 5.991606 TCATAGATACCTGCAACATACAAGC 59.008 40.000 0.00 0.00 0.00 4.01
3172 3735 6.088217 CACTTTCGGCTAATATGTCATAGTCG 59.912 42.308 2.33 2.33 45.85 4.18
3268 3831 4.743644 GCTTCTCGTACGCCAGTAATAAAT 59.256 41.667 11.24 0.00 34.16 1.40
3382 3945 4.182339 GTTGCCTAAACAGGTCTACTAGC 58.818 47.826 0.00 0.00 38.75 3.42
3490 4062 0.112412 TTTTCTTCTGAGGGCCACCC 59.888 55.000 6.18 0.00 45.90 4.61
3777 4351 3.200165 GGGGCCAGATTTAGTTCTACTGT 59.800 47.826 4.39 0.00 0.00 3.55
3847 4421 5.215069 ACAGAATCAGTAGTCAGGGATCAT 58.785 41.667 0.00 0.00 0.00 2.45
3904 4478 7.425606 AGTATGATTGAACAACAAAGACAACC 58.574 34.615 0.00 0.00 42.03 3.77
3931 4505 4.160814 CCATCCAAATGAATCTCCAAGCAA 59.839 41.667 0.00 0.00 34.61 3.91
3963 4537 3.377485 GCATGAGATTGTGAGCACATCTT 59.623 43.478 3.90 0.00 41.52 2.40
4111 4730 2.158740 TGCACACCAGCTAACCAACTTA 60.159 45.455 0.00 0.00 34.99 2.24
4140 4759 7.487189 GCAGACATGTTCCTTTTCAATTATCTG 59.513 37.037 0.00 0.00 0.00 2.90
4146 4766 4.586001 ACAGCAGACATGTTCCTTTTCAAT 59.414 37.500 0.00 0.00 0.00 2.57
4149 4769 4.574599 AACAGCAGACATGTTCCTTTTC 57.425 40.909 0.00 0.00 36.10 2.29
4188 4808 7.556996 ACGGAGGGAGTAGTATATAAGCATAAG 59.443 40.741 0.00 0.00 0.00 1.73
4189 4809 7.408543 ACGGAGGGAGTAGTATATAAGCATAA 58.591 38.462 0.00 0.00 0.00 1.90
4191 4811 5.828871 ACGGAGGGAGTAGTATATAAGCAT 58.171 41.667 0.00 0.00 0.00 3.79
4192 4812 5.252586 ACGGAGGGAGTAGTATATAAGCA 57.747 43.478 0.00 0.00 0.00 3.91
4193 4813 6.433716 AGAAACGGAGGGAGTAGTATATAAGC 59.566 42.308 0.00 0.00 0.00 3.09
4194 4814 7.999450 AGAAACGGAGGGAGTAGTATATAAG 57.001 40.000 0.00 0.00 0.00 1.73
4200 4820 8.773033 AATATTTAGAAACGGAGGGAGTAGTA 57.227 34.615 0.00 0.00 0.00 1.82
4201 4821 7.672122 AATATTTAGAAACGGAGGGAGTAGT 57.328 36.000 0.00 0.00 0.00 2.73
4202 4822 7.985752 ACAAATATTTAGAAACGGAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
4203 4823 7.854337 ACAAATATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
4204 4824 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
4205 4825 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
4206 4826 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
4207 4827 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
4208 4828 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
4232 4852 9.477484 GAGTAGTCACTTGTTGAAATCTTTAGA 57.523 33.333 0.00 0.00 35.39 2.10
4233 4853 9.482627 AGAGTAGTCACTTGTTGAAATCTTTAG 57.517 33.333 0.00 0.00 35.39 1.85
4308 4932 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
4309 4933 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
4310 4934 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4311 4935 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4312 4936 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4318 4942 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4324 4948 1.203149 ACTTGTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
4325 4949 1.264295 ACTTGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
4327 4951 5.494390 AATAAACTTGTACTCCCTCCGTT 57.506 39.130 0.00 0.00 0.00 4.44
4380 5004 2.127271 ACACGATTCATGGCCATTCA 57.873 45.000 17.92 5.67 0.00 2.57
4403 5027 3.258872 TCAAATTGCAGCAATTACCAGCT 59.741 39.130 29.51 13.22 42.32 4.24
4406 5030 3.006644 TGCTCAAATTGCAGCAATTACCA 59.993 39.130 29.51 20.57 42.32 3.25
4422 5046 7.391554 AGCTTTGTCTAATACTGAATTGCTCAA 59.608 33.333 0.00 0.00 32.17 3.02
4469 5094 2.101249 ACACCAATGAACACAGCAAAGG 59.899 45.455 0.00 0.00 0.00 3.11
4476 5101 6.927936 CCAAATGATAAACACCAATGAACACA 59.072 34.615 0.00 0.00 0.00 3.72
4477 5102 6.128580 GCCAAATGATAAACACCAATGAACAC 60.129 38.462 0.00 0.00 0.00 3.32
4482 5107 4.330620 GCTGCCAAATGATAAACACCAATG 59.669 41.667 0.00 0.00 0.00 2.82
4483 5108 4.020396 TGCTGCCAAATGATAAACACCAAT 60.020 37.500 0.00 0.00 0.00 3.16
4485 5110 2.896044 TGCTGCCAAATGATAAACACCA 59.104 40.909 0.00 0.00 0.00 4.17
4486 5111 3.591196 TGCTGCCAAATGATAAACACC 57.409 42.857 0.00 0.00 0.00 4.16
4487 5112 5.409214 ACAATTGCTGCCAAATGATAAACAC 59.591 36.000 5.05 0.00 35.80 3.32
4521 5147 2.360483 TGCACGATTGGACATTGTTGTT 59.640 40.909 0.00 0.00 35.79 2.83
4583 5209 2.349886 CACTCGCAGCTATTCAAAGACC 59.650 50.000 0.00 0.00 0.00 3.85
4594 5220 0.801251 GAGCATTTTCACTCGCAGCT 59.199 50.000 0.00 0.00 0.00 4.24
4611 5237 1.480137 CTGGGTGCTACTGAAGAGGAG 59.520 57.143 0.00 0.00 32.44 3.69
4621 5247 1.098050 CCTGCAAATCTGGGTGCTAC 58.902 55.000 0.00 0.00 41.48 3.58
4627 5255 2.890371 GCTGCCTGCAAATCTGGG 59.110 61.111 0.00 0.00 42.31 4.45
4649 5277 7.336396 AGTGGGTTGTTCTGGTATCTATAAAC 58.664 38.462 0.00 0.00 0.00 2.01
4654 5282 4.224370 GGAAGTGGGTTGTTCTGGTATCTA 59.776 45.833 0.00 0.00 0.00 1.98
4668 5296 1.556911 CTGCTAGTGATGGAAGTGGGT 59.443 52.381 0.00 0.00 0.00 4.51
4799 5427 5.086621 AGGAAGGGCAATGTTAAACTGATT 58.913 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.