Multiple sequence alignment - TraesCS2A01G406800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G406800 chr2A 100.000 4580 0 0 1 4580 662347141 662342562 0.000000e+00 8458.0
1 TraesCS2A01G406800 chr2A 90.361 83 7 1 454 535 376357542 376357624 1.740000e-19 108.0
2 TraesCS2A01G406800 chr2A 84.158 101 15 1 432 531 20236570 20236670 3.770000e-16 97.1
3 TraesCS2A01G406800 chr2A 86.667 75 6 3 681 751 697515516 697515442 3.800000e-11 80.5
4 TraesCS2A01G406800 chr2A 85.000 60 9 0 587 646 751762827 751762768 1.380000e-05 62.1
5 TraesCS2A01G406800 chr2D 91.364 1239 78 18 1036 2258 518272904 518271679 0.000000e+00 1668.0
6 TraesCS2A01G406800 chr2D 91.256 892 66 8 3668 4558 518270221 518269341 0.000000e+00 1205.0
7 TraesCS2A01G406800 chr2D 95.728 632 26 1 3033 3663 518270898 518270267 0.000000e+00 1016.0
8 TraesCS2A01G406800 chr2D 93.750 624 38 1 2413 3036 518271690 518271068 0.000000e+00 935.0
9 TraesCS2A01G406800 chr2D 90.879 307 22 5 2 304 518274655 518274351 1.530000e-109 407.0
10 TraesCS2A01G406800 chr2D 91.489 141 12 0 2272 2412 75170603 75170743 1.300000e-45 195.0
11 TraesCS2A01G406800 chr2D 79.508 122 22 3 734 855 599216457 599216575 2.940000e-12 84.2
12 TraesCS2A01G406800 chr2B 90.435 1265 71 21 1025 2258 610423412 610422167 0.000000e+00 1620.0
13 TraesCS2A01G406800 chr2B 90.849 1213 63 23 850 2024 610423623 610422421 0.000000e+00 1581.0
14 TraesCS2A01G406800 chr2B 89.081 925 72 17 3668 4573 610420819 610419905 0.000000e+00 1122.0
15 TraesCS2A01G406800 chr2B 93.959 629 27 4 3040 3667 610421481 610420863 0.000000e+00 941.0
16 TraesCS2A01G406800 chr2B 94.867 487 24 1 2555 3041 610421994 610421509 0.000000e+00 760.0
17 TraesCS2A01G406800 chr2B 89.506 162 9 1 2413 2566 610422178 610422017 1.010000e-46 198.0
18 TraesCS2A01G406800 chr5D 91.489 141 12 0 2272 2412 446626651 446626791 1.300000e-45 195.0
19 TraesCS2A01G406800 chr5D 89.157 83 8 1 454 535 101809839 101809757 8.110000e-18 102.0
20 TraesCS2A01G406800 chr5D 90.909 66 5 1 581 646 336413392 336413456 2.270000e-13 87.9
21 TraesCS2A01G406800 chr5D 84.091 88 7 5 644 725 190473941 190474027 1.370000e-10 78.7
22 TraesCS2A01G406800 chr5D 85.714 63 9 0 583 645 387787771 387787833 2.960000e-07 67.6
23 TraesCS2A01G406800 chr6D 87.574 169 16 3 2253 2421 89425562 89425399 1.680000e-44 191.0
24 TraesCS2A01G406800 chr7D 89.333 150 16 0 2272 2421 504716275 504716126 6.050000e-44 189.0
25 TraesCS2A01G406800 chr7D 90.698 86 7 1 454 538 83344931 83345016 3.750000e-21 113.0
26 TraesCS2A01G406800 chr7D 83.721 86 8 5 644 725 168058950 168059033 4.910000e-10 76.8
27 TraesCS2A01G406800 chr4D 90.780 141 13 0 2272 2412 22737806 22737946 6.050000e-44 189.0
28 TraesCS2A01G406800 chr4D 89.333 150 16 0 2272 2421 75934394 75934245 6.050000e-44 189.0
29 TraesCS2A01G406800 chr4D 89.333 150 16 0 2272 2421 439487418 439487269 6.050000e-44 189.0
30 TraesCS2A01G406800 chr4D 90.780 141 13 0 2272 2412 443021952 443022092 6.050000e-44 189.0
31 TraesCS2A01G406800 chr3D 89.333 150 16 0 2272 2421 463316808 463316659 6.050000e-44 189.0
32 TraesCS2A01G406800 chr3D 83.065 124 15 5 723 840 110270567 110270690 1.740000e-19 108.0
33 TraesCS2A01G406800 chr3D 89.157 83 8 1 454 535 273857408 273857326 8.110000e-18 102.0
34 TraesCS2A01G406800 chr3D 89.157 83 8 1 454 535 338164339 338164257 8.110000e-18 102.0
35 TraesCS2A01G406800 chr3D 85.294 102 10 4 718 816 5866919 5867018 2.920000e-17 100.0
36 TraesCS2A01G406800 chr6A 88.550 131 13 2 718 846 551862471 551862601 1.710000e-34 158.0
37 TraesCS2A01G406800 chr3A 74.627 268 52 12 590 844 123982025 123982289 2.250000e-18 104.0
38 TraesCS2A01G406800 chr3A 86.813 91 9 2 446 535 63733929 63734017 1.050000e-16 99.0
39 TraesCS2A01G406800 chr3A 85.714 77 9 2 681 757 654987693 654987767 3.800000e-11 80.5
40 TraesCS2A01G406800 chr3A 88.525 61 6 1 586 646 30361477 30361536 6.360000e-09 73.1
41 TraesCS2A01G406800 chr5B 85.859 99 10 4 439 535 13084208 13084112 8.110000e-18 102.0
42 TraesCS2A01G406800 chr5B 83.529 85 11 3 645 727 705275956 705275873 4.910000e-10 76.8
43 TraesCS2A01G406800 chr5B 84.615 78 8 4 681 757 620461858 620461784 1.770000e-09 75.0
44 TraesCS2A01G406800 chr1D 89.157 83 8 1 454 535 216825162 216825080 8.110000e-18 102.0
45 TraesCS2A01G406800 chr6B 82.692 104 18 0 741 844 134770435 134770538 4.880000e-15 93.5
46 TraesCS2A01G406800 chr7A 83.951 81 9 3 644 723 28406793 28406870 1.770000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G406800 chr2A 662342562 662347141 4579 True 8458.0 8458 100.0000 1 4580 1 chr2A.!!$R1 4579
1 TraesCS2A01G406800 chr2D 518269341 518274655 5314 True 1046.2 1668 92.5954 2 4558 5 chr2D.!!$R1 4556
2 TraesCS2A01G406800 chr2B 610419905 610423623 3718 True 1037.0 1620 91.4495 850 4573 6 chr2B.!!$R1 3723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 1682 0.976641 TGGGTGTGGCTAAGTCTCAG 59.023 55.0 0.00 0.0 0.00 3.35 F
1043 2172 0.038310 GCCCTAGACAGCCAAACCTT 59.962 55.0 0.00 0.0 0.00 3.50 F
2344 3513 0.179156 AACTGCACATAAGCATGCGC 60.179 50.0 13.01 9.1 45.13 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 3545 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.0 0.0 0.0 0.0 5.24 R
2670 3881 0.449388 GCCTCTTCAAATGCCTGTCG 59.551 55.0 0.0 0.0 0.0 4.35 R
3776 5234 0.107643 CCCCAACGCCAAAAACCATT 59.892 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.812347 ATGGATCTTATAAAACTTCCATGCATA 57.188 29.630 0.00 0.00 41.27 3.14
55 56 9.639563 TGGATCTTATAAAACTTCCATGCATAA 57.360 29.630 0.00 0.00 0.00 1.90
63 64 9.723601 ATAAAACTTCCATGCATAAACAATGTT 57.276 25.926 0.00 0.00 37.93 2.71
106 107 5.975988 TCTGAAAACCCCAATCTAGCTAT 57.024 39.130 0.00 0.00 0.00 2.97
115 116 6.243900 ACCCCAATCTAGCTATTGATTCATG 58.756 40.000 10.26 0.04 38.84 3.07
119 120 7.827729 CCCAATCTAGCTATTGATTCATGATCA 59.172 37.037 10.26 0.00 42.95 2.92
154 155 7.172868 TCACACCAAAATGCTCAATGATAAT 57.827 32.000 0.00 0.00 0.00 1.28
155 156 7.036829 TCACACCAAAATGCTCAATGATAATG 58.963 34.615 0.00 0.00 0.00 1.90
156 157 5.813672 ACACCAAAATGCTCAATGATAATGC 59.186 36.000 0.00 0.00 0.00 3.56
157 158 5.235616 CACCAAAATGCTCAATGATAATGCC 59.764 40.000 0.00 0.00 0.00 4.40
158 159 5.104859 ACCAAAATGCTCAATGATAATGCCA 60.105 36.000 0.00 0.00 0.00 4.92
159 160 5.465390 CCAAAATGCTCAATGATAATGCCAG 59.535 40.000 0.00 0.00 0.00 4.85
161 162 5.449107 AATGCTCAATGATAATGCCAGAC 57.551 39.130 0.00 0.00 0.00 3.51
162 163 3.888583 TGCTCAATGATAATGCCAGACA 58.111 40.909 0.00 0.00 0.00 3.41
163 164 3.881089 TGCTCAATGATAATGCCAGACAG 59.119 43.478 0.00 0.00 0.00 3.51
211 214 9.872684 ACATCAGGTGATTAATAAATTCATCCT 57.127 29.630 0.00 0.00 31.21 3.24
213 216 8.607441 TCAGGTGATTAATAAATTCATCCTCG 57.393 34.615 0.00 0.00 0.00 4.63
215 218 6.431234 AGGTGATTAATAAATTCATCCTCGCC 59.569 38.462 0.00 0.00 0.00 5.54
216 219 6.206634 GGTGATTAATAAATTCATCCTCGCCA 59.793 38.462 0.00 0.00 0.00 5.69
217 220 7.078228 GTGATTAATAAATTCATCCTCGCCAC 58.922 38.462 0.00 0.00 0.00 5.01
218 221 6.770303 TGATTAATAAATTCATCCTCGCCACA 59.230 34.615 0.00 0.00 0.00 4.17
222 225 3.575965 AATTCATCCTCGCCACAAAAC 57.424 42.857 0.00 0.00 0.00 2.43
234 237 4.061596 CGCCACAAAACCCACAATTAAAT 58.938 39.130 0.00 0.00 0.00 1.40
301 305 9.023967 CAACTTATCAAGAGAAAACAACCAAAG 57.976 33.333 0.00 0.00 0.00 2.77
303 307 7.559897 ACTTATCAAGAGAAAACAACCAAAGGA 59.440 33.333 0.00 0.00 0.00 3.36
305 309 6.207691 TCAAGAGAAAACAACCAAAGGAAG 57.792 37.500 0.00 0.00 0.00 3.46
306 310 5.949354 TCAAGAGAAAACAACCAAAGGAAGA 59.051 36.000 0.00 0.00 0.00 2.87
307 311 6.607198 TCAAGAGAAAACAACCAAAGGAAGAT 59.393 34.615 0.00 0.00 0.00 2.40
308 312 6.396829 AGAGAAAACAACCAAAGGAAGATG 57.603 37.500 0.00 0.00 0.00 2.90
309 313 5.893824 AGAGAAAACAACCAAAGGAAGATGT 59.106 36.000 0.00 0.00 0.00 3.06
310 314 6.381133 AGAGAAAACAACCAAAGGAAGATGTT 59.619 34.615 0.00 0.00 32.78 2.71
311 315 7.559897 AGAGAAAACAACCAAAGGAAGATGTTA 59.440 33.333 0.00 0.00 31.33 2.41
312 316 7.716612 AGAAAACAACCAAAGGAAGATGTTAG 58.283 34.615 0.00 0.00 31.33 2.34
313 317 7.559897 AGAAAACAACCAAAGGAAGATGTTAGA 59.440 33.333 0.00 0.00 31.33 2.10
314 318 7.839680 AAACAACCAAAGGAAGATGTTAGAT 57.160 32.000 0.00 0.00 31.33 1.98
315 319 6.824305 ACAACCAAAGGAAGATGTTAGATG 57.176 37.500 0.00 0.00 0.00 2.90
316 320 5.711976 ACAACCAAAGGAAGATGTTAGATGG 59.288 40.000 0.00 0.00 0.00 3.51
317 321 5.779241 ACCAAAGGAAGATGTTAGATGGA 57.221 39.130 0.00 0.00 0.00 3.41
318 322 5.501156 ACCAAAGGAAGATGTTAGATGGAC 58.499 41.667 0.00 0.00 0.00 4.02
319 323 5.014123 ACCAAAGGAAGATGTTAGATGGACA 59.986 40.000 0.00 0.00 0.00 4.02
320 324 6.125029 CCAAAGGAAGATGTTAGATGGACAT 58.875 40.000 0.00 0.00 40.27 3.06
321 325 6.604795 CCAAAGGAAGATGTTAGATGGACATT 59.395 38.462 0.00 0.00 37.83 2.71
322 326 7.123247 CCAAAGGAAGATGTTAGATGGACATTT 59.877 37.037 0.00 0.00 37.83 2.32
323 327 9.177608 CAAAGGAAGATGTTAGATGGACATTTA 57.822 33.333 0.00 0.00 37.83 1.40
324 328 8.970859 AAGGAAGATGTTAGATGGACATTTAG 57.029 34.615 0.00 0.00 37.83 1.85
325 329 8.324191 AGGAAGATGTTAGATGGACATTTAGA 57.676 34.615 0.00 0.00 37.83 2.10
326 330 8.207545 AGGAAGATGTTAGATGGACATTTAGAC 58.792 37.037 0.00 0.00 37.83 2.59
327 331 8.207545 GGAAGATGTTAGATGGACATTTAGACT 58.792 37.037 0.00 0.00 37.83 3.24
328 332 9.606631 GAAGATGTTAGATGGACATTTAGACTT 57.393 33.333 0.00 0.00 37.83 3.01
329 333 8.954950 AGATGTTAGATGGACATTTAGACTTG 57.045 34.615 0.00 0.00 37.83 3.16
330 334 8.543774 AGATGTTAGATGGACATTTAGACTTGT 58.456 33.333 0.00 0.00 37.83 3.16
331 335 8.723942 ATGTTAGATGGACATTTAGACTTGTC 57.276 34.615 0.00 0.00 41.19 3.18
332 336 7.676004 TGTTAGATGGACATTTAGACTTGTCA 58.324 34.615 7.81 0.00 43.20 3.58
333 337 7.602644 TGTTAGATGGACATTTAGACTTGTCAC 59.397 37.037 7.81 0.00 43.20 3.67
334 338 6.365970 AGATGGACATTTAGACTTGTCACT 57.634 37.500 7.81 2.42 43.20 3.41
353 357 9.747898 TTGTCACTACAAGAATATAAAATGGGT 57.252 29.630 0.00 0.00 40.69 4.51
361 365 8.749354 ACAAGAATATAAAATGGGTTGAACTCC 58.251 33.333 0.00 0.00 0.00 3.85
371 375 5.845391 TGGGTTGAACTCCTTTAAAACAG 57.155 39.130 0.00 0.00 0.00 3.16
375 379 6.371389 GGTTGAACTCCTTTAAAACAGATCG 58.629 40.000 0.00 0.00 0.00 3.69
390 394 1.938577 AGATCGCATGACACAATGAGC 59.061 47.619 0.00 0.00 0.00 4.26
397 401 3.686241 GCATGACACAATGAGCTAGTGAA 59.314 43.478 13.09 3.94 37.05 3.18
398 402 4.201792 GCATGACACAATGAGCTAGTGAAG 60.202 45.833 13.09 2.28 37.05 3.02
399 403 4.607293 TGACACAATGAGCTAGTGAAGT 57.393 40.909 13.09 4.83 37.05 3.01
401 405 3.668447 ACACAATGAGCTAGTGAAGTGG 58.332 45.455 13.09 0.00 37.05 4.00
402 406 3.071602 ACACAATGAGCTAGTGAAGTGGT 59.928 43.478 13.09 0.00 37.05 4.16
403 407 3.434641 CACAATGAGCTAGTGAAGTGGTG 59.565 47.826 0.00 0.00 35.33 4.17
404 408 3.324846 ACAATGAGCTAGTGAAGTGGTGA 59.675 43.478 0.00 0.00 0.00 4.02
410 423 2.248248 CTAGTGAAGTGGTGACTGGGA 58.752 52.381 0.00 0.00 30.61 4.37
422 435 2.814336 GTGACTGGGATGACCTTTGTTC 59.186 50.000 0.00 0.00 41.11 3.18
427 440 4.020128 ACTGGGATGACCTTTGTTCTCTAC 60.020 45.833 0.00 0.00 41.11 2.59
428 441 3.263425 TGGGATGACCTTTGTTCTCTACC 59.737 47.826 0.00 0.00 41.11 3.18
430 443 3.370633 GGATGACCTTTGTTCTCTACCCC 60.371 52.174 0.00 0.00 0.00 4.95
431 444 1.982958 TGACCTTTGTTCTCTACCCCC 59.017 52.381 0.00 0.00 0.00 5.40
432 445 2.267192 GACCTTTGTTCTCTACCCCCT 58.733 52.381 0.00 0.00 0.00 4.79
433 446 3.181404 TGACCTTTGTTCTCTACCCCCTA 60.181 47.826 0.00 0.00 0.00 3.53
434 447 3.179685 ACCTTTGTTCTCTACCCCCTAC 58.820 50.000 0.00 0.00 0.00 3.18
435 448 3.181398 ACCTTTGTTCTCTACCCCCTACT 60.181 47.826 0.00 0.00 0.00 2.57
436 449 4.046360 ACCTTTGTTCTCTACCCCCTACTA 59.954 45.833 0.00 0.00 0.00 1.82
437 450 4.405036 CCTTTGTTCTCTACCCCCTACTAC 59.595 50.000 0.00 0.00 0.00 2.73
438 451 4.680278 TTGTTCTCTACCCCCTACTACA 57.320 45.455 0.00 0.00 0.00 2.74
439 452 4.246712 TGTTCTCTACCCCCTACTACAG 57.753 50.000 0.00 0.00 0.00 2.74
440 453 3.854389 TGTTCTCTACCCCCTACTACAGA 59.146 47.826 0.00 0.00 0.00 3.41
441 454 4.481280 TGTTCTCTACCCCCTACTACAGAT 59.519 45.833 0.00 0.00 0.00 2.90
442 455 4.726035 TCTCTACCCCCTACTACAGATG 57.274 50.000 0.00 0.00 0.00 2.90
443 456 4.052922 TCTCTACCCCCTACTACAGATGT 58.947 47.826 0.00 0.00 0.00 3.06
444 457 5.229966 TCTCTACCCCCTACTACAGATGTA 58.770 45.833 0.00 0.00 0.00 2.29
445 458 5.856160 TCTCTACCCCCTACTACAGATGTAT 59.144 44.000 0.00 0.00 0.00 2.29
446 459 7.027502 TCTCTACCCCCTACTACAGATGTATA 58.972 42.308 0.00 0.00 0.00 1.47
447 460 7.687661 TCTCTACCCCCTACTACAGATGTATAT 59.312 40.741 0.00 0.00 0.00 0.86
448 461 8.938387 TCTACCCCCTACTACAGATGTATATA 57.062 38.462 0.00 0.00 0.00 0.86
449 462 9.000978 TCTACCCCCTACTACAGATGTATATAG 57.999 40.741 0.00 0.04 0.00 1.31
450 463 7.842260 ACCCCCTACTACAGATGTATATAGA 57.158 40.000 10.72 0.00 0.00 1.98
451 464 7.641249 ACCCCCTACTACAGATGTATATAGAC 58.359 42.308 10.72 0.00 0.00 2.59
452 465 6.766944 CCCCCTACTACAGATGTATATAGACG 59.233 46.154 10.72 0.00 0.00 4.18
453 466 6.766944 CCCCTACTACAGATGTATATAGACGG 59.233 46.154 10.72 7.46 0.00 4.79
454 467 7.337167 CCCTACTACAGATGTATATAGACGGT 58.663 42.308 10.72 0.00 0.00 4.83
455 468 7.280428 CCCTACTACAGATGTATATAGACGGTG 59.720 44.444 10.72 0.00 0.00 4.94
456 469 7.823310 CCTACTACAGATGTATATAGACGGTGT 59.177 40.741 10.72 5.04 0.00 4.16
457 470 9.866798 CTACTACAGATGTATATAGACGGTGTA 57.133 37.037 0.00 6.37 0.00 2.90
458 471 8.774890 ACTACAGATGTATATAGACGGTGTAG 57.225 38.462 20.88 20.88 40.33 2.74
459 472 8.591940 ACTACAGATGTATATAGACGGTGTAGA 58.408 37.037 25.30 5.49 37.93 2.59
460 473 7.908827 ACAGATGTATATAGACGGTGTAGAG 57.091 40.000 0.00 0.00 0.00 2.43
461 474 7.451732 ACAGATGTATATAGACGGTGTAGAGT 58.548 38.462 0.00 0.00 0.00 3.24
462 475 7.603404 ACAGATGTATATAGACGGTGTAGAGTC 59.397 40.741 0.00 0.00 37.63 3.36
463 476 7.603024 CAGATGTATATAGACGGTGTAGAGTCA 59.397 40.741 0.00 0.00 39.67 3.41
464 477 8.155510 AGATGTATATAGACGGTGTAGAGTCAA 58.844 37.037 0.00 0.00 39.67 3.18
465 478 8.865420 ATGTATATAGACGGTGTAGAGTCAAT 57.135 34.615 0.00 0.00 39.67 2.57
466 479 8.320396 TGTATATAGACGGTGTAGAGTCAATC 57.680 38.462 0.00 0.00 39.67 2.67
467 480 7.935210 TGTATATAGACGGTGTAGAGTCAATCA 59.065 37.037 0.00 0.00 39.67 2.57
468 481 8.948145 GTATATAGACGGTGTAGAGTCAATCAT 58.052 37.037 0.00 0.00 39.67 2.45
469 482 6.716934 ATAGACGGTGTAGAGTCAATCATT 57.283 37.500 0.00 0.00 39.67 2.57
470 483 5.407407 AGACGGTGTAGAGTCAATCATTT 57.593 39.130 0.00 0.00 39.67 2.32
471 484 5.794894 AGACGGTGTAGAGTCAATCATTTT 58.205 37.500 0.00 0.00 39.67 1.82
472 485 6.931838 AGACGGTGTAGAGTCAATCATTTTA 58.068 36.000 0.00 0.00 39.67 1.52
473 486 6.812160 AGACGGTGTAGAGTCAATCATTTTAC 59.188 38.462 0.00 0.00 39.67 2.01
474 487 5.873164 ACGGTGTAGAGTCAATCATTTTACC 59.127 40.000 0.00 0.00 0.00 2.85
475 488 5.293569 CGGTGTAGAGTCAATCATTTTACCC 59.706 44.000 0.00 0.00 0.00 3.69
476 489 5.589050 GGTGTAGAGTCAATCATTTTACCCC 59.411 44.000 0.00 0.00 0.00 4.95
477 490 5.589050 GTGTAGAGTCAATCATTTTACCCCC 59.411 44.000 0.00 0.00 0.00 5.40
478 491 5.491078 TGTAGAGTCAATCATTTTACCCCCT 59.509 40.000 0.00 0.00 0.00 4.79
479 492 6.674861 TGTAGAGTCAATCATTTTACCCCCTA 59.325 38.462 0.00 0.00 0.00 3.53
480 493 6.848562 AGAGTCAATCATTTTACCCCCTAT 57.151 37.500 0.00 0.00 0.00 2.57
481 494 6.605119 AGAGTCAATCATTTTACCCCCTATG 58.395 40.000 0.00 0.00 0.00 2.23
482 495 6.160459 AGAGTCAATCATTTTACCCCCTATGT 59.840 38.462 0.00 0.00 0.00 2.29
483 496 7.349859 AGAGTCAATCATTTTACCCCCTATGTA 59.650 37.037 0.00 0.00 0.00 2.29
484 497 7.518188 AGTCAATCATTTTACCCCCTATGTAG 58.482 38.462 0.00 0.00 0.00 2.74
485 498 7.128883 AGTCAATCATTTTACCCCCTATGTAGT 59.871 37.037 0.00 0.00 0.00 2.73
486 499 7.444487 GTCAATCATTTTACCCCCTATGTAGTC 59.556 40.741 0.00 0.00 0.00 2.59
487 500 7.349859 TCAATCATTTTACCCCCTATGTAGTCT 59.650 37.037 0.00 0.00 0.00 3.24
488 501 6.742559 TCATTTTACCCCCTATGTAGTCTC 57.257 41.667 0.00 0.00 0.00 3.36
489 502 6.449956 TCATTTTACCCCCTATGTAGTCTCT 58.550 40.000 0.00 0.00 0.00 3.10
490 503 7.598248 TCATTTTACCCCCTATGTAGTCTCTA 58.402 38.462 0.00 0.00 0.00 2.43
491 504 8.239478 TCATTTTACCCCCTATGTAGTCTCTAT 58.761 37.037 0.00 0.00 0.00 1.98
492 505 8.881262 CATTTTACCCCCTATGTAGTCTCTATT 58.119 37.037 0.00 0.00 0.00 1.73
493 506 7.850935 TTTACCCCCTATGTAGTCTCTATTG 57.149 40.000 0.00 0.00 0.00 1.90
494 507 4.161102 ACCCCCTATGTAGTCTCTATTGC 58.839 47.826 0.00 0.00 0.00 3.56
495 508 4.160329 CCCCCTATGTAGTCTCTATTGCA 58.840 47.826 0.00 0.00 0.00 4.08
496 509 4.593206 CCCCCTATGTAGTCTCTATTGCAA 59.407 45.833 0.00 0.00 0.00 4.08
497 510 5.249393 CCCCCTATGTAGTCTCTATTGCAAT 59.751 44.000 17.56 17.56 0.00 3.56
498 511 6.440647 CCCCCTATGTAGTCTCTATTGCAATA 59.559 42.308 17.94 17.94 0.00 1.90
499 512 7.126421 CCCCCTATGTAGTCTCTATTGCAATAT 59.874 40.741 19.17 7.13 0.00 1.28
500 513 8.200792 CCCCTATGTAGTCTCTATTGCAATATC 58.799 40.741 19.17 10.31 0.00 1.63
501 514 8.976353 CCCTATGTAGTCTCTATTGCAATATCT 58.024 37.037 19.17 15.81 0.00 1.98
529 542 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
530 543 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
531 544 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
532 545 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
533 546 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
534 547 8.858094 ACTTATATTTAGAAACGGAGGGAGTAG 58.142 37.037 0.00 0.00 0.00 2.57
535 548 6.667558 ATATTTAGAAACGGAGGGAGTAGG 57.332 41.667 0.00 0.00 0.00 3.18
536 549 3.463048 TTAGAAACGGAGGGAGTAGGT 57.537 47.619 0.00 0.00 0.00 3.08
537 550 1.558233 AGAAACGGAGGGAGTAGGTG 58.442 55.000 0.00 0.00 0.00 4.00
549 562 2.111384 GAGTAGGTGCCAGATCAAGGA 58.889 52.381 8.29 0.00 0.00 3.36
594 1669 8.664669 ATTATTGGAACTTAGAAAATGGGTGT 57.335 30.769 0.00 0.00 0.00 4.16
595 1670 5.782893 TTGGAACTTAGAAAATGGGTGTG 57.217 39.130 0.00 0.00 0.00 3.82
596 1671 4.148838 TGGAACTTAGAAAATGGGTGTGG 58.851 43.478 0.00 0.00 0.00 4.17
597 1672 3.056821 GGAACTTAGAAAATGGGTGTGGC 60.057 47.826 0.00 0.00 0.00 5.01
598 1673 3.525800 ACTTAGAAAATGGGTGTGGCT 57.474 42.857 0.00 0.00 0.00 4.75
599 1674 4.650972 ACTTAGAAAATGGGTGTGGCTA 57.349 40.909 0.00 0.00 0.00 3.93
600 1675 4.993028 ACTTAGAAAATGGGTGTGGCTAA 58.007 39.130 0.00 0.00 0.00 3.09
601 1676 5.010282 ACTTAGAAAATGGGTGTGGCTAAG 58.990 41.667 0.00 0.00 39.26 2.18
602 1677 3.525800 AGAAAATGGGTGTGGCTAAGT 57.474 42.857 0.00 0.00 0.00 2.24
603 1678 3.421844 AGAAAATGGGTGTGGCTAAGTC 58.578 45.455 0.00 0.00 0.00 3.01
604 1679 3.074538 AGAAAATGGGTGTGGCTAAGTCT 59.925 43.478 0.00 0.00 0.00 3.24
605 1680 2.789409 AATGGGTGTGGCTAAGTCTC 57.211 50.000 0.00 0.00 0.00 3.36
606 1681 1.656587 ATGGGTGTGGCTAAGTCTCA 58.343 50.000 0.00 0.00 0.00 3.27
607 1682 0.976641 TGGGTGTGGCTAAGTCTCAG 59.023 55.000 0.00 0.00 0.00 3.35
608 1683 0.977395 GGGTGTGGCTAAGTCTCAGT 59.023 55.000 0.00 0.00 0.00 3.41
609 1684 1.066787 GGGTGTGGCTAAGTCTCAGTC 60.067 57.143 0.00 0.00 0.00 3.51
610 1685 1.402984 GGTGTGGCTAAGTCTCAGTCG 60.403 57.143 0.00 0.00 0.00 4.18
611 1686 1.540267 GTGTGGCTAAGTCTCAGTCGA 59.460 52.381 0.00 0.00 0.00 4.20
612 1687 1.540267 TGTGGCTAAGTCTCAGTCGAC 59.460 52.381 7.70 7.70 0.00 4.20
613 1688 1.813786 GTGGCTAAGTCTCAGTCGACT 59.186 52.381 13.58 13.58 45.73 4.18
625 1700 7.883217 AGTCTCAGTCGACTTAAACTTAATCA 58.117 34.615 17.26 0.00 41.27 2.57
626 1701 8.358148 AGTCTCAGTCGACTTAAACTTAATCAA 58.642 33.333 17.26 0.00 41.27 2.57
627 1702 8.640291 GTCTCAGTCGACTTAAACTTAATCAAG 58.360 37.037 17.26 0.00 37.81 3.02
629 1704 8.516811 TCAGTCGACTTAAACTTAATCAAGTC 57.483 34.615 17.26 3.76 44.41 3.01
630 1705 8.358148 TCAGTCGACTTAAACTTAATCAAGTCT 58.642 33.333 17.26 0.00 44.41 3.24
631 1706 8.979574 CAGTCGACTTAAACTTAATCAAGTCTT 58.020 33.333 17.26 0.00 44.41 3.01
641 1716 9.832445 AAACTTAATCAAGTCTTAGTCAAGTGA 57.168 29.630 0.00 0.00 44.41 3.41
650 1725 9.522804 CAAGTCTTAGTCAAGTGATATACTTCC 57.477 37.037 0.00 0.00 46.55 3.46
651 1726 9.482175 AAGTCTTAGTCAAGTGATATACTTCCT 57.518 33.333 0.00 0.00 46.55 3.36
652 1727 9.127277 AGTCTTAGTCAAGTGATATACTTCCTC 57.873 37.037 0.00 0.00 46.55 3.71
653 1728 8.354426 GTCTTAGTCAAGTGATATACTTCCTCC 58.646 40.741 0.00 0.00 46.55 4.30
654 1729 5.776173 AGTCAAGTGATATACTTCCTCCG 57.224 43.478 0.00 0.00 46.55 4.63
655 1730 5.202004 AGTCAAGTGATATACTTCCTCCGT 58.798 41.667 0.00 0.00 46.55 4.69
656 1731 5.299782 AGTCAAGTGATATACTTCCTCCGTC 59.700 44.000 0.00 0.00 46.55 4.79
657 1732 5.299782 GTCAAGTGATATACTTCCTCCGTCT 59.700 44.000 0.00 0.00 46.55 4.18
658 1733 5.531659 TCAAGTGATATACTTCCTCCGTCTC 59.468 44.000 0.00 0.00 46.55 3.36
659 1734 5.050126 AGTGATATACTTCCTCCGTCTCA 57.950 43.478 0.00 0.00 35.67 3.27
660 1735 5.446860 AGTGATATACTTCCTCCGTCTCAA 58.553 41.667 0.00 0.00 35.67 3.02
661 1736 5.892119 AGTGATATACTTCCTCCGTCTCAAA 59.108 40.000 0.00 0.00 35.67 2.69
662 1737 6.380274 AGTGATATACTTCCTCCGTCTCAAAA 59.620 38.462 0.00 0.00 35.67 2.44
663 1738 7.070074 AGTGATATACTTCCTCCGTCTCAAAAT 59.930 37.037 0.00 0.00 35.67 1.82
664 1739 7.711339 GTGATATACTTCCTCCGTCTCAAAATT 59.289 37.037 0.00 0.00 0.00 1.82
665 1740 8.265055 TGATATACTTCCTCCGTCTCAAAATTT 58.735 33.333 0.00 0.00 0.00 1.82
666 1741 9.760077 GATATACTTCCTCCGTCTCAAAATTTA 57.240 33.333 0.00 0.00 0.00 1.40
668 1743 6.803154 ACTTCCTCCGTCTCAAAATTTAAG 57.197 37.500 0.00 0.00 0.00 1.85
669 1744 6.531021 ACTTCCTCCGTCTCAAAATTTAAGA 58.469 36.000 0.00 0.00 0.00 2.10
670 1745 6.427242 ACTTCCTCCGTCTCAAAATTTAAGAC 59.573 38.462 17.61 17.61 36.82 3.01
671 1746 5.860611 TCCTCCGTCTCAAAATTTAAGACA 58.139 37.500 23.17 11.21 39.49 3.41
672 1747 6.292923 TCCTCCGTCTCAAAATTTAAGACAA 58.707 36.000 23.17 14.52 39.49 3.18
673 1748 6.426937 TCCTCCGTCTCAAAATTTAAGACAAG 59.573 38.462 23.17 19.66 39.49 3.16
674 1749 6.426937 CCTCCGTCTCAAAATTTAAGACAAGA 59.573 38.462 23.17 19.06 39.49 3.02
675 1750 7.041372 CCTCCGTCTCAAAATTTAAGACAAGAA 60.041 37.037 23.17 11.08 39.49 2.52
676 1751 8.391075 TCCGTCTCAAAATTTAAGACAAGAAT 57.609 30.769 23.17 0.00 39.49 2.40
677 1752 8.846211 TCCGTCTCAAAATTTAAGACAAGAATT 58.154 29.630 23.17 0.00 39.49 2.17
678 1753 9.463443 CCGTCTCAAAATTTAAGACAAGAATTT 57.537 29.630 23.17 0.00 39.49 1.82
705 1780 9.971922 AAGACAAATCTAAGACAAGAATTTTGG 57.028 29.630 0.00 0.00 33.04 3.28
706 1781 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
707 1782 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
708 1783 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
709 1784 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
710 1785 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
711 1786 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
712 1787 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
713 1788 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
714 1789 2.107552 ACAAGAATTTTGGGACGGAGGA 59.892 45.455 0.00 0.00 0.00 3.71
715 1790 3.153919 CAAGAATTTTGGGACGGAGGAA 58.846 45.455 0.00 0.00 0.00 3.36
716 1791 3.073274 AGAATTTTGGGACGGAGGAAG 57.927 47.619 0.00 0.00 0.00 3.46
717 1792 2.375509 AGAATTTTGGGACGGAGGAAGT 59.624 45.455 0.00 0.00 0.00 3.01
718 1793 3.585732 AGAATTTTGGGACGGAGGAAGTA 59.414 43.478 0.00 0.00 0.00 2.24
719 1794 4.227527 AGAATTTTGGGACGGAGGAAGTAT 59.772 41.667 0.00 0.00 0.00 2.12
720 1795 5.427481 AGAATTTTGGGACGGAGGAAGTATA 59.573 40.000 0.00 0.00 0.00 1.47
721 1796 4.748277 TTTTGGGACGGAGGAAGTATAG 57.252 45.455 0.00 0.00 0.00 1.31
722 1797 3.393426 TTGGGACGGAGGAAGTATAGT 57.607 47.619 0.00 0.00 0.00 2.12
723 1798 4.524802 TTGGGACGGAGGAAGTATAGTA 57.475 45.455 0.00 0.00 0.00 1.82
724 1799 4.736611 TGGGACGGAGGAAGTATAGTAT 57.263 45.455 0.00 0.00 0.00 2.12
725 1800 5.848286 TGGGACGGAGGAAGTATAGTATA 57.152 43.478 0.00 0.00 0.00 1.47
726 1801 6.398655 TGGGACGGAGGAAGTATAGTATAT 57.601 41.667 0.00 0.00 0.00 0.86
727 1802 7.515004 TGGGACGGAGGAAGTATAGTATATA 57.485 40.000 0.00 0.00 0.00 0.86
728 1803 7.932134 TGGGACGGAGGAAGTATAGTATATAA 58.068 38.462 0.00 0.00 0.00 0.98
729 1804 8.051535 TGGGACGGAGGAAGTATAGTATATAAG 58.948 40.741 0.00 0.00 0.00 1.73
730 1805 8.270744 GGGACGGAGGAAGTATAGTATATAAGA 58.729 40.741 0.00 0.00 0.00 2.10
731 1806 9.678260 GGACGGAGGAAGTATAGTATATAAGAA 57.322 37.037 0.00 0.00 0.00 2.52
777 1852 7.801547 AAAATTGTACGAATCTTCATGCAAG 57.198 32.000 0.00 0.00 0.00 4.01
778 1853 6.741992 AATTGTACGAATCTTCATGCAAGA 57.258 33.333 9.18 9.18 45.60 3.02
787 1862 3.423749 TCTTCATGCAAGATCAAAGGCA 58.576 40.909 0.00 0.00 36.08 4.75
789 1864 5.195185 TCTTCATGCAAGATCAAAGGCATA 58.805 37.500 11.39 0.42 44.55 3.14
790 1865 4.906065 TCATGCAAGATCAAAGGCATAC 57.094 40.909 11.39 0.00 44.55 2.39
791 1866 4.271661 TCATGCAAGATCAAAGGCATACA 58.728 39.130 11.39 2.18 44.55 2.29
792 1867 4.705991 TCATGCAAGATCAAAGGCATACAA 59.294 37.500 11.39 1.62 44.55 2.41
793 1868 5.361571 TCATGCAAGATCAAAGGCATACAAT 59.638 36.000 11.39 0.00 44.55 2.71
794 1869 6.546772 TCATGCAAGATCAAAGGCATACAATA 59.453 34.615 11.39 0.00 44.55 1.90
795 1870 6.964807 TGCAAGATCAAAGGCATACAATAT 57.035 33.333 0.00 0.00 0.00 1.28
796 1871 6.973843 TGCAAGATCAAAGGCATACAATATC 58.026 36.000 0.00 0.00 0.00 1.63
797 1872 6.082338 GCAAGATCAAAGGCATACAATATCG 58.918 40.000 0.00 0.00 0.00 2.92
798 1873 6.073058 GCAAGATCAAAGGCATACAATATCGA 60.073 38.462 0.00 0.00 0.00 3.59
799 1874 7.293745 CAAGATCAAAGGCATACAATATCGAC 58.706 38.462 0.00 0.00 0.00 4.20
800 1875 6.763355 AGATCAAAGGCATACAATATCGACT 58.237 36.000 0.00 0.00 0.00 4.18
801 1876 6.648310 AGATCAAAGGCATACAATATCGACTG 59.352 38.462 0.00 0.00 0.00 3.51
802 1877 5.912892 TCAAAGGCATACAATATCGACTGA 58.087 37.500 0.00 0.00 0.00 3.41
803 1878 5.985530 TCAAAGGCATACAATATCGACTGAG 59.014 40.000 0.00 0.00 0.00 3.35
804 1879 5.791336 AAGGCATACAATATCGACTGAGA 57.209 39.130 0.00 0.00 0.00 3.27
805 1880 5.127693 AGGCATACAATATCGACTGAGAC 57.872 43.478 0.00 0.00 0.00 3.36
806 1881 4.584743 AGGCATACAATATCGACTGAGACA 59.415 41.667 0.00 0.00 0.00 3.41
807 1882 5.244851 AGGCATACAATATCGACTGAGACAT 59.755 40.000 0.00 0.00 0.00 3.06
808 1883 6.434340 AGGCATACAATATCGACTGAGACATA 59.566 38.462 0.00 0.00 0.00 2.29
809 1884 7.039714 AGGCATACAATATCGACTGAGACATAA 60.040 37.037 0.00 0.00 0.00 1.90
810 1885 7.062371 GGCATACAATATCGACTGAGACATAAC 59.938 40.741 0.00 0.00 0.00 1.89
811 1886 7.201274 GCATACAATATCGACTGAGACATAACG 60.201 40.741 0.00 0.00 0.00 3.18
812 1887 6.373186 ACAATATCGACTGAGACATAACGA 57.627 37.500 0.00 0.00 0.00 3.85
813 1888 6.792326 ACAATATCGACTGAGACATAACGAA 58.208 36.000 0.00 0.00 33.77 3.85
814 1889 6.913132 ACAATATCGACTGAGACATAACGAAG 59.087 38.462 0.00 0.00 33.77 3.79
832 1907 5.903810 ACGAAGTTTTAGTTGACTGAGACT 58.096 37.500 0.00 0.00 37.78 3.24
833 1908 6.338937 ACGAAGTTTTAGTTGACTGAGACTT 58.661 36.000 10.33 10.33 37.78 3.01
834 1909 7.486647 ACGAAGTTTTAGTTGACTGAGACTTA 58.513 34.615 10.47 0.00 37.78 2.24
835 1910 7.648510 ACGAAGTTTTAGTTGACTGAGACTTAG 59.351 37.037 10.47 12.15 37.78 2.18
836 1911 7.358517 CGAAGTTTTAGTTGACTGAGACTTAGC 60.359 40.741 10.47 1.90 37.15 3.09
837 1912 6.817184 AGTTTTAGTTGACTGAGACTTAGCA 58.183 36.000 0.00 0.00 0.00 3.49
838 1913 7.272978 AGTTTTAGTTGACTGAGACTTAGCAA 58.727 34.615 0.00 0.00 0.00 3.91
839 1914 7.769044 AGTTTTAGTTGACTGAGACTTAGCAAA 59.231 33.333 5.94 0.00 0.00 3.68
840 1915 8.395633 GTTTTAGTTGACTGAGACTTAGCAAAA 58.604 33.333 5.94 0.00 0.00 2.44
841 1916 5.993106 AGTTGACTGAGACTTAGCAAAAC 57.007 39.130 5.94 3.61 0.00 2.43
842 1917 5.675538 AGTTGACTGAGACTTAGCAAAACT 58.324 37.500 5.94 5.35 0.00 2.66
843 1918 5.525378 AGTTGACTGAGACTTAGCAAAACTG 59.475 40.000 8.24 0.00 0.00 3.16
844 1919 5.023533 TGACTGAGACTTAGCAAAACTGT 57.976 39.130 0.00 0.00 0.00 3.55
845 1920 5.428253 TGACTGAGACTTAGCAAAACTGTT 58.572 37.500 0.00 0.00 0.00 3.16
846 1921 6.578944 TGACTGAGACTTAGCAAAACTGTTA 58.421 36.000 0.00 0.00 0.00 2.41
847 1922 7.045416 TGACTGAGACTTAGCAAAACTGTTAA 58.955 34.615 0.00 0.00 0.00 2.01
848 1923 7.551262 TGACTGAGACTTAGCAAAACTGTTAAA 59.449 33.333 0.00 0.00 0.00 1.52
1019 2126 1.323534 CACGCGTACAGAATAAGCCAC 59.676 52.381 13.44 0.00 0.00 5.01
1039 2168 2.046314 GCGCCCTAGACAGCCAAA 60.046 61.111 0.00 0.00 0.00 3.28
1042 2171 1.685820 GCCCTAGACAGCCAAACCT 59.314 57.895 0.00 0.00 0.00 3.50
1043 2172 0.038310 GCCCTAGACAGCCAAACCTT 59.962 55.000 0.00 0.00 0.00 3.50
1044 2173 1.950954 GCCCTAGACAGCCAAACCTTC 60.951 57.143 0.00 0.00 0.00 3.46
1071 2204 2.268796 TCCCAATCCAGACCATCAGA 57.731 50.000 0.00 0.00 0.00 3.27
1072 2205 2.121948 TCCCAATCCAGACCATCAGAG 58.878 52.381 0.00 0.00 0.00 3.35
1589 2723 1.603455 CGCCAACACCAACAGGGAT 60.603 57.895 0.00 0.00 41.15 3.85
1610 2744 2.833582 TCCGTCATCGAGGCCTCC 60.834 66.667 27.20 11.46 39.71 4.30
1713 2847 3.535561 CTCAAGGCGTCATTCAAGGTAT 58.464 45.455 0.00 0.00 0.00 2.73
1716 2850 5.680619 TCAAGGCGTCATTCAAGGTATATT 58.319 37.500 0.00 0.00 0.00 1.28
1717 2851 5.758296 TCAAGGCGTCATTCAAGGTATATTC 59.242 40.000 0.00 0.00 0.00 1.75
1724 2858 9.472361 GCGTCATTCAAGGTATATTCTTTAGTA 57.528 33.333 0.00 0.00 0.00 1.82
1818 2955 6.914259 TCACATACAAACACACACAAAAGAA 58.086 32.000 0.00 0.00 0.00 2.52
1819 2956 7.026562 TCACATACAAACACACACAAAAGAAG 58.973 34.615 0.00 0.00 0.00 2.85
1851 2988 4.828829 AGGACTGTAGGATTAACCAAACG 58.171 43.478 0.00 0.00 42.04 3.60
1852 2989 3.937079 GGACTGTAGGATTAACCAAACGG 59.063 47.826 0.00 0.00 42.04 4.44
1877 3014 5.636965 CGGTTTGATTTTATTGTTCCATGCA 59.363 36.000 0.00 0.00 0.00 3.96
1882 3019 8.618702 TTGATTTTATTGTTCCATGCACATTT 57.381 26.923 0.00 0.00 0.00 2.32
1911 3048 9.185680 TCTGCTGACAGTGATAGTTATAGTTTA 57.814 33.333 3.99 0.00 44.77 2.01
1913 3050 8.967918 TGCTGACAGTGATAGTTATAGTTTAGT 58.032 33.333 3.99 0.00 0.00 2.24
1933 3070 4.147321 AGTTGTGAATTGTGAGAATGCCT 58.853 39.130 0.00 0.00 0.00 4.75
1950 3087 7.856415 AGAATGCCTAATAGTGACTTCTTCTT 58.144 34.615 0.00 0.00 0.00 2.52
1965 3102 4.188247 TCTTCTTGTACTAACTGCGCAT 57.812 40.909 12.24 0.00 0.00 4.73
1992 3129 3.488489 CGCTATGGTACTTGTTTGCAAC 58.512 45.455 0.00 0.00 0.00 4.17
1997 3134 4.364415 TGGTACTTGTTTGCAACTGTTC 57.636 40.909 0.00 0.00 0.00 3.18
2024 3161 6.710278 TGTTCCATGAACATGATTAGAGACA 58.290 36.000 15.21 8.52 45.88 3.41
2026 3164 8.485392 TGTTCCATGAACATGATTAGAGACATA 58.515 33.333 15.21 0.00 45.88 2.29
2056 3220 8.850007 AGGATGAAATGAGTTGATATCTGATG 57.150 34.615 3.98 0.00 0.00 3.07
2057 3221 7.883833 AGGATGAAATGAGTTGATATCTGATGG 59.116 37.037 3.98 0.00 0.00 3.51
2142 3311 9.281075 GTTTATTACTTGTATGCTAAAAACCCG 57.719 33.333 0.00 0.00 0.00 5.28
2164 3333 2.225792 GCTGAGGAGCATAAGGGGT 58.774 57.895 0.00 0.00 45.46 4.95
2181 3350 1.215423 GGGTAATTCATCCACAGGGCT 59.785 52.381 0.00 0.00 0.00 5.19
2182 3351 2.301346 GGTAATTCATCCACAGGGCTG 58.699 52.381 0.00 0.00 0.00 4.85
2207 3376 1.211949 GCTAGTTGGGGAGGCAACATA 59.788 52.381 0.00 0.00 41.41 2.29
2226 3395 2.496899 ATTACCACTTCCACTGCCAG 57.503 50.000 0.00 0.00 0.00 4.85
2232 3401 1.131638 ACTTCCACTGCCAGTCTCAA 58.868 50.000 0.00 0.00 0.00 3.02
2233 3402 1.071385 ACTTCCACTGCCAGTCTCAAG 59.929 52.381 0.00 0.00 0.00 3.02
2237 3406 0.321122 CACTGCCAGTCTCAAGGACC 60.321 60.000 0.00 0.00 45.54 4.46
2249 3418 7.275183 CAGTCTCAAGGACCATATTTGATGTA 58.725 38.462 0.00 0.00 45.54 2.29
2250 3419 7.225538 CAGTCTCAAGGACCATATTTGATGTAC 59.774 40.741 0.00 0.00 45.54 2.90
2251 3420 7.126421 AGTCTCAAGGACCATATTTGATGTACT 59.874 37.037 0.00 0.00 45.54 2.73
2252 3421 8.421784 GTCTCAAGGACCATATTTGATGTACTA 58.578 37.037 0.00 0.00 38.93 1.82
2253 3422 8.988060 TCTCAAGGACCATATTTGATGTACTAA 58.012 33.333 0.00 0.00 31.11 2.24
2254 3423 9.784531 CTCAAGGACCATATTTGATGTACTAAT 57.215 33.333 0.00 0.00 31.11 1.73
2255 3424 9.778741 TCAAGGACCATATTTGATGTACTAATC 57.221 33.333 0.00 0.00 0.00 1.75
2256 3425 9.559732 CAAGGACCATATTTGATGTACTAATCA 57.440 33.333 0.00 0.00 34.75 2.57
2273 3442 9.717892 GTACTAATCATAGTTTAAAAAGGCAGC 57.282 33.333 0.00 0.00 42.39 5.25
2274 3443 8.348285 ACTAATCATAGTTTAAAAAGGCAGCA 57.652 30.769 0.00 0.00 39.36 4.41
2275 3444 8.802267 ACTAATCATAGTTTAAAAAGGCAGCAA 58.198 29.630 0.00 0.00 39.36 3.91
2276 3445 9.294030 CTAATCATAGTTTAAAAAGGCAGCAAG 57.706 33.333 0.00 0.00 0.00 4.01
2277 3446 5.469479 TCATAGTTTAAAAAGGCAGCAAGC 58.531 37.500 0.00 0.00 44.65 4.01
2295 3464 3.410958 GCTTAAGTGCGCCTAGGC 58.589 61.111 24.75 24.75 37.85 3.93
2296 3465 1.153349 GCTTAAGTGCGCCTAGGCT 60.153 57.895 30.55 14.71 39.32 4.58
2297 3466 1.154814 GCTTAAGTGCGCCTAGGCTC 61.155 60.000 30.55 24.16 39.32 4.70
2298 3467 0.461961 CTTAAGTGCGCCTAGGCTCT 59.538 55.000 30.55 21.51 38.30 4.09
2299 3468 1.681793 CTTAAGTGCGCCTAGGCTCTA 59.318 52.381 30.55 14.20 35.86 2.43
2300 3469 1.319541 TAAGTGCGCCTAGGCTCTAG 58.680 55.000 30.55 16.51 35.86 2.43
2301 3470 1.395826 AAGTGCGCCTAGGCTCTAGG 61.396 60.000 30.55 16.12 35.86 3.02
2309 3478 3.176924 CCTAGGCTCTAGGCAATAGGA 57.823 52.381 18.70 0.00 46.30 2.94
2310 3479 3.511477 CCTAGGCTCTAGGCAATAGGAA 58.489 50.000 18.70 0.00 46.30 3.36
2311 3480 3.904339 CCTAGGCTCTAGGCAATAGGAAA 59.096 47.826 18.70 0.00 46.30 3.13
2312 3481 4.348168 CCTAGGCTCTAGGCAATAGGAAAA 59.652 45.833 18.70 0.00 46.30 2.29
2313 3482 4.157849 AGGCTCTAGGCAATAGGAAAAC 57.842 45.455 6.30 0.00 44.01 2.43
2314 3483 2.872858 GGCTCTAGGCAATAGGAAAACG 59.127 50.000 0.00 0.00 44.01 3.60
2315 3484 2.288186 GCTCTAGGCAATAGGAAAACGC 59.712 50.000 0.00 0.00 41.35 4.84
2316 3485 2.872858 CTCTAGGCAATAGGAAAACGCC 59.127 50.000 0.00 0.00 43.31 5.68
2320 3489 1.333931 GGCAATAGGAAAACGCCTAGC 59.666 52.381 0.00 0.00 43.41 3.42
2343 3512 3.294102 CATAACTGCACATAAGCATGCG 58.706 45.455 13.01 0.00 45.13 4.73
2344 3513 0.179156 AACTGCACATAAGCATGCGC 60.179 50.000 13.01 9.10 45.13 6.09
2356 3525 2.267188 GCATGCGCTTTGATGAGAAA 57.733 45.000 9.73 0.00 34.30 2.52
2357 3526 2.598589 GCATGCGCTTTGATGAGAAAA 58.401 42.857 9.73 0.00 34.30 2.29
2358 3527 2.988493 GCATGCGCTTTGATGAGAAAAA 59.012 40.909 9.73 0.00 34.30 1.94
2359 3528 3.181537 GCATGCGCTTTGATGAGAAAAAC 60.182 43.478 9.73 0.00 34.30 2.43
2360 3529 2.649516 TGCGCTTTGATGAGAAAAACG 58.350 42.857 9.73 0.00 0.00 3.60
2361 3530 1.383412 GCGCTTTGATGAGAAAAACGC 59.617 47.619 0.00 1.61 36.82 4.84
2362 3531 2.649516 CGCTTTGATGAGAAAAACGCA 58.350 42.857 0.00 0.00 0.00 5.24
2363 3532 3.042189 CGCTTTGATGAGAAAAACGCAA 58.958 40.909 0.00 0.00 0.00 4.85
2364 3533 6.383110 GCGCTTTGATGAGAAAAACGCAAG 62.383 45.833 0.00 0.00 43.03 4.01
2365 3534 3.426525 GCTTTGATGAGAAAAACGCAAGG 59.573 43.478 0.00 0.00 46.39 3.61
2366 3535 2.704725 TGATGAGAAAAACGCAAGGC 57.295 45.000 0.00 0.00 46.39 4.35
2377 3546 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
2378 3547 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
2383 3552 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
2384 3553 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
2385 3554 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
2386 3555 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
2387 3556 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
2388 3557 2.219903 GGTGGCAAAACGCACAATTAAC 59.780 45.455 0.00 0.00 45.17 2.01
2389 3558 2.097637 GTGGCAAAACGCACAATTAACG 60.098 45.455 0.00 0.00 45.17 3.18
2390 3559 1.136748 GGCAAAACGCACAATTAACGC 60.137 47.619 0.00 0.00 45.17 4.84
2391 3560 1.136748 GCAAAACGCACAATTAACGCC 60.137 47.619 0.00 0.00 41.79 5.68
2392 3561 2.389998 CAAAACGCACAATTAACGCCT 58.610 42.857 0.00 0.00 0.00 5.52
2393 3562 3.556513 CAAAACGCACAATTAACGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
2394 3563 3.465122 AAACGCACAATTAACGCCTAG 57.535 42.857 0.00 0.00 0.00 3.02
2395 3564 0.725117 ACGCACAATTAACGCCTAGC 59.275 50.000 0.00 0.00 0.00 3.42
2432 3601 9.547753 ACTATGGTACTAATGCATTTAGTCTTG 57.452 33.333 18.75 3.95 46.04 3.02
2440 3609 6.875926 AATGCATTTAGTCTTGCGATTTTC 57.124 33.333 5.99 0.00 41.80 2.29
2441 3610 5.627499 TGCATTTAGTCTTGCGATTTTCT 57.373 34.783 0.00 0.00 41.80 2.52
2444 3613 5.509622 GCATTTAGTCTTGCGATTTTCTGAC 59.490 40.000 0.00 0.00 0.00 3.51
2447 3616 8.607459 CATTTAGTCTTGCGATTTTCTGACTAT 58.393 33.333 0.00 0.00 37.04 2.12
2577 3788 5.651172 TTGGATGCGATTTATTGTACTCG 57.349 39.130 0.00 0.00 0.00 4.18
2601 3812 8.869897 TCGTAATGAGTCATTTAGTTTCATGTC 58.130 33.333 22.90 1.04 35.54 3.06
2602 3813 8.655970 CGTAATGAGTCATTTAGTTTCATGTCA 58.344 33.333 22.90 0.00 35.54 3.58
2616 3827 7.056006 AGTTTCATGTCATATGCTATGGTTGA 58.944 34.615 14.89 3.15 0.00 3.18
2947 4158 8.331742 GCATAAATGTAGTCTAGAAAGAACTGC 58.668 37.037 0.00 0.00 32.16 4.40
2948 4159 9.593134 CATAAATGTAGTCTAGAAAGAACTGCT 57.407 33.333 0.00 0.00 32.16 4.24
2986 4197 4.273480 CACCGGCATCTACAAAAGAATAGG 59.727 45.833 0.00 0.00 37.89 2.57
3002 4213 2.212752 TAGGAAGAGAATGGGGGCAT 57.787 50.000 0.00 0.00 0.00 4.40
3015 4226 0.468226 GGGGCATACCTCGACAATCA 59.532 55.000 0.00 0.00 40.03 2.57
3169 4583 7.540474 TGATACTCTAGAGGTTTGTTGTCTT 57.460 36.000 23.50 0.75 0.00 3.01
3409 4823 7.121611 TGAAATGATGTGTGACATAGCTTGAAT 59.878 33.333 0.00 0.00 39.27 2.57
3462 4876 9.970395 ATCAACAAATCGATGCAATGTATATTT 57.030 25.926 0.00 0.00 0.00 1.40
3589 5003 6.147581 CAGGATGATTATGCCATTTTCTTCG 58.852 40.000 0.00 0.00 39.69 3.79
3609 5024 3.249320 TCGGTCTATGTCTTCCGTAATCG 59.751 47.826 0.00 0.00 42.95 3.34
3644 5059 3.610040 TCTGGTCATTGCGATTGTAGT 57.390 42.857 0.00 0.00 0.00 2.73
3656 5071 8.604035 CATTGCGATTGTAGTGAAAAGTAGTAT 58.396 33.333 0.00 0.00 0.00 2.12
3663 5078 8.827177 TTGTAGTGAAAAGTAGTATTGGTGAG 57.173 34.615 0.00 0.00 0.00 3.51
3725 5183 5.079689 TGAAAACAAACCCTTCCTGAAAC 57.920 39.130 0.00 0.00 0.00 2.78
3728 5186 5.692115 AAACAAACCCTTCCTGAAACATT 57.308 34.783 0.00 0.00 0.00 2.71
3733 5191 6.126796 ACAAACCCTTCCTGAAACATTTCATT 60.127 34.615 7.48 0.00 45.26 2.57
3749 5207 2.370445 ATTGCTGAGGGCTAGGCGT 61.370 57.895 11.73 11.73 42.39 5.68
3766 5224 1.567504 CGTCGGGATAGAAAATGCGT 58.432 50.000 0.00 0.00 0.00 5.24
3776 5234 0.793861 GAAAATGCGTAGGCGTGACA 59.206 50.000 2.31 0.00 44.10 3.58
3785 5243 2.031508 CGTAGGCGTGACAATGGTTTTT 60.032 45.455 0.00 0.00 0.00 1.94
3791 5249 2.545731 GTGACAATGGTTTTTGGCGTT 58.454 42.857 0.00 0.00 37.44 4.84
3808 5266 2.773527 TTGGGGGTGGTTGTGAGGG 61.774 63.158 0.00 0.00 0.00 4.30
3810 5268 2.856988 GGGGTGGTTGTGAGGGGA 60.857 66.667 0.00 0.00 0.00 4.81
3811 5269 2.757077 GGGTGGTTGTGAGGGGAG 59.243 66.667 0.00 0.00 0.00 4.30
3812 5270 2.154074 GGGTGGTTGTGAGGGGAGT 61.154 63.158 0.00 0.00 0.00 3.85
3814 5272 1.705997 GGTGGTTGTGAGGGGAGTGT 61.706 60.000 0.00 0.00 0.00 3.55
3815 5273 0.250338 GTGGTTGTGAGGGGAGTGTC 60.250 60.000 0.00 0.00 0.00 3.67
3860 5336 2.005220 GCAATCTGCTCTGTCGCTC 58.995 57.895 0.00 0.00 40.96 5.03
3931 5407 1.268283 GCTCTGGCCTAGAAGGGTGT 61.268 60.000 3.32 0.00 35.37 4.16
3948 5424 0.396435 TGTGACGGTTCCTTGCATCT 59.604 50.000 0.00 0.00 0.00 2.90
3988 5464 3.248266 GTGAAAATCTGAGTGGCATTGC 58.752 45.455 0.00 0.00 0.00 3.56
4015 5491 1.228533 GCAAAATGTGTTTGGCTGGG 58.771 50.000 1.38 0.00 40.44 4.45
4030 5506 6.497624 TTGGCTGGGCAATATATTGATTTT 57.502 33.333 26.22 0.00 40.14 1.82
4079 5555 6.683974 TGTATAGAAATCTTTTCTGGCTGC 57.316 37.500 11.73 0.00 0.00 5.25
4105 5581 1.002366 CAGCGATTCCGAGGAGTTTG 58.998 55.000 0.00 0.00 38.22 2.93
4151 5627 3.859961 CAGAAGCGATTGTCTTCATACGT 59.140 43.478 15.28 0.00 41.68 3.57
4152 5628 5.034797 CAGAAGCGATTGTCTTCATACGTA 58.965 41.667 15.28 0.00 41.68 3.57
4153 5629 5.035443 AGAAGCGATTGTCTTCATACGTAC 58.965 41.667 15.28 0.00 41.68 3.67
4154 5630 3.360533 AGCGATTGTCTTCATACGTACG 58.639 45.455 15.01 15.01 0.00 3.67
4165 5641 5.343058 TCTTCATACGTACGTTGTAAGTTGC 59.657 40.000 27.92 0.00 0.00 4.17
4211 5687 4.037446 TGGTTGTACAAGGCAATTTGAGAC 59.963 41.667 8.98 0.00 0.00 3.36
4226 5702 7.116805 GCAATTTGAGACCTCATTTAAGTTTGG 59.883 37.037 0.00 0.00 39.64 3.28
4258 5734 5.305585 TGTTCCTTGTGTCAAGTAGATTCC 58.694 41.667 8.37 0.00 0.00 3.01
4334 5810 6.363357 GGCACTTTTGATCTTTGTTACATGTC 59.637 38.462 0.00 0.00 0.00 3.06
4340 5816 7.439157 TTGATCTTTGTTACATGTCTCCAAG 57.561 36.000 0.00 4.79 0.00 3.61
4352 5828 2.037902 TGTCTCCAAGCAACAACCGATA 59.962 45.455 0.00 0.00 0.00 2.92
4362 5838 6.178239 AGCAACAACCGATACAATAAAGAC 57.822 37.500 0.00 0.00 0.00 3.01
4400 5876 2.247358 ACAAATCCCACACCAATCACC 58.753 47.619 0.00 0.00 0.00 4.02
4411 5887 3.273434 CACCAATCACCTCACACTATGG 58.727 50.000 0.00 0.00 0.00 2.74
4423 5899 3.947196 TCACACTATGGCATCAATGGAAC 59.053 43.478 1.65 0.00 0.00 3.62
4430 5906 1.939934 GGCATCAATGGAACGAATCGA 59.060 47.619 10.55 0.00 0.00 3.59
4439 5915 0.713883 GAACGAATCGAAGCTGCGAA 59.286 50.000 23.14 4.62 44.22 4.70
4458 5934 3.526534 GAACATCTTGCTCCAGAGTACC 58.473 50.000 0.00 0.00 0.00 3.34
4480 5956 5.130975 ACCAATCATAGTTCATCTGTAGCCA 59.869 40.000 0.00 0.00 0.00 4.75
4486 5962 3.539604 AGTTCATCTGTAGCCATTCTGC 58.460 45.455 0.00 0.00 0.00 4.26
4543 6019 1.882912 TCATCCTGAGCACACAACAC 58.117 50.000 0.00 0.00 0.00 3.32
4549 6025 0.455410 TGAGCACACAACACAAAGGC 59.545 50.000 0.00 0.00 0.00 4.35
4573 6049 5.064452 CAGCATTCAAAGGTCAGTACTCATC 59.936 44.000 0.00 0.00 0.00 2.92
4574 6050 4.937620 GCATTCAAAGGTCAGTACTCATCA 59.062 41.667 0.00 0.00 0.00 3.07
4575 6051 5.412594 GCATTCAAAGGTCAGTACTCATCAA 59.587 40.000 0.00 0.00 0.00 2.57
4576 6052 6.094603 GCATTCAAAGGTCAGTACTCATCAAT 59.905 38.462 0.00 0.00 0.00 2.57
4577 6053 7.678218 GCATTCAAAGGTCAGTACTCATCAATC 60.678 40.741 0.00 0.00 0.00 2.67
4578 6054 6.611613 TCAAAGGTCAGTACTCATCAATCT 57.388 37.500 0.00 0.00 0.00 2.40
4579 6055 7.718334 TCAAAGGTCAGTACTCATCAATCTA 57.282 36.000 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 5.912149 TGAATCAATAGCTAGATTGGGGT 57.088 39.130 11.76 0.00 37.41 4.95
115 116 5.581126 TGGTGTGAAATTAGGCAATGATC 57.419 39.130 0.00 0.00 0.00 2.92
119 120 5.412286 GCATTTTGGTGTGAAATTAGGCAAT 59.588 36.000 0.00 0.00 0.00 3.56
158 159 0.181114 TGTTGTTGCCAGAGCTGTCT 59.819 50.000 0.00 0.00 40.80 3.41
159 160 0.308993 GTGTTGTTGCCAGAGCTGTC 59.691 55.000 0.00 0.00 40.80 3.51
161 162 0.309922 CTGTGTTGTTGCCAGAGCTG 59.690 55.000 0.00 0.00 40.80 4.24
162 163 0.107017 ACTGTGTTGTTGCCAGAGCT 60.107 50.000 0.00 0.00 40.80 4.09
163 164 0.029834 CACTGTGTTGTTGCCAGAGC 59.970 55.000 0.00 0.00 40.48 4.09
206 209 0.893270 TGGGTTTTGTGGCGAGGATG 60.893 55.000 0.00 0.00 0.00 3.51
210 213 0.673437 ATTGTGGGTTTTGTGGCGAG 59.327 50.000 0.00 0.00 0.00 5.03
211 214 1.115467 AATTGTGGGTTTTGTGGCGA 58.885 45.000 0.00 0.00 0.00 5.54
212 215 2.802787 TAATTGTGGGTTTTGTGGCG 57.197 45.000 0.00 0.00 0.00 5.69
213 216 4.215185 CCATTTAATTGTGGGTTTTGTGGC 59.785 41.667 0.00 0.00 0.00 5.01
215 218 6.934048 AACCATTTAATTGTGGGTTTTGTG 57.066 33.333 10.05 0.00 38.65 3.33
216 219 8.268605 ACTAAACCATTTAATTGTGGGTTTTGT 58.731 29.630 17.63 17.78 46.59 2.83
217 220 8.669946 ACTAAACCATTTAATTGTGGGTTTTG 57.330 30.769 17.63 17.35 46.59 2.44
218 221 9.688091 AAACTAAACCATTTAATTGTGGGTTTT 57.312 25.926 17.63 9.94 46.59 2.43
222 225 7.307692 GCACAAACTAAACCATTTAATTGTGGG 60.308 37.037 23.80 12.14 43.84 4.61
234 237 2.696187 GGAAAGGGCACAAACTAAACCA 59.304 45.455 0.00 0.00 0.00 3.67
267 271 9.052759 GTTTTCTCTTGATAAGTTGGTGACTAA 57.947 33.333 0.00 0.00 37.72 2.24
274 278 7.038154 TGGTTGTTTTCTCTTGATAAGTTGG 57.962 36.000 0.00 0.00 0.00 3.77
301 305 8.207545 AGTCTAAATGTCCATCTAACATCTTCC 58.792 37.037 0.00 0.00 36.35 3.46
303 307 9.388506 CAAGTCTAAATGTCCATCTAACATCTT 57.611 33.333 0.00 0.00 36.35 2.40
305 309 8.723942 ACAAGTCTAAATGTCCATCTAACATC 57.276 34.615 0.00 0.00 36.35 3.06
306 310 8.321353 TGACAAGTCTAAATGTCCATCTAACAT 58.679 33.333 1.53 0.00 44.16 2.71
307 311 7.602644 GTGACAAGTCTAAATGTCCATCTAACA 59.397 37.037 1.53 0.00 44.16 2.41
308 312 7.819900 AGTGACAAGTCTAAATGTCCATCTAAC 59.180 37.037 1.53 0.00 44.16 2.34
309 313 7.907389 AGTGACAAGTCTAAATGTCCATCTAA 58.093 34.615 1.53 0.00 44.16 2.10
310 314 7.482169 AGTGACAAGTCTAAATGTCCATCTA 57.518 36.000 1.53 0.00 44.16 1.98
311 315 6.365970 AGTGACAAGTCTAAATGTCCATCT 57.634 37.500 1.53 0.00 44.16 2.90
312 316 7.097192 TGTAGTGACAAGTCTAAATGTCCATC 58.903 38.462 1.53 0.00 44.16 3.51
313 317 7.004555 TGTAGTGACAAGTCTAAATGTCCAT 57.995 36.000 1.53 0.00 44.16 3.41
314 318 6.413783 TGTAGTGACAAGTCTAAATGTCCA 57.586 37.500 1.53 0.00 44.16 4.02
327 331 9.747898 ACCCATTTTATATTCTTGTAGTGACAA 57.252 29.630 0.00 0.00 43.41 3.18
328 332 9.747898 AACCCATTTTATATTCTTGTAGTGACA 57.252 29.630 0.00 0.00 0.00 3.58
330 334 9.967451 TCAACCCATTTTATATTCTTGTAGTGA 57.033 29.630 0.00 0.00 0.00 3.41
353 357 5.529430 TGCGATCTGTTTTAAAGGAGTTCAA 59.471 36.000 0.00 0.00 0.00 2.69
361 365 5.688823 TGTGTCATGCGATCTGTTTTAAAG 58.311 37.500 0.00 0.00 0.00 1.85
371 375 1.938577 AGCTCATTGTGTCATGCGATC 59.061 47.619 0.00 0.00 0.00 3.69
375 379 3.264947 TCACTAGCTCATTGTGTCATGC 58.735 45.455 0.00 0.00 36.24 4.06
390 394 2.248248 TCCCAGTCACCACTTCACTAG 58.752 52.381 0.00 0.00 0.00 2.57
397 401 0.178891 AGGTCATCCCAGTCACCACT 60.179 55.000 0.00 0.00 34.66 4.00
398 402 0.693049 AAGGTCATCCCAGTCACCAC 59.307 55.000 0.00 0.00 34.66 4.16
399 403 1.073763 CAAAGGTCATCCCAGTCACCA 59.926 52.381 0.00 0.00 34.66 4.17
401 405 2.568623 ACAAAGGTCATCCCAGTCAC 57.431 50.000 0.00 0.00 34.66 3.67
402 406 2.711009 AGAACAAAGGTCATCCCAGTCA 59.289 45.455 0.00 0.00 34.66 3.41
403 407 3.008485 AGAGAACAAAGGTCATCCCAGTC 59.992 47.826 0.00 0.00 34.66 3.51
404 408 2.982488 AGAGAACAAAGGTCATCCCAGT 59.018 45.455 0.00 0.00 34.66 4.00
410 423 2.576648 GGGGGTAGAGAACAAAGGTCAT 59.423 50.000 0.00 0.00 0.00 3.06
422 435 4.456662 ACATCTGTAGTAGGGGGTAGAG 57.543 50.000 0.00 0.00 0.00 2.43
427 440 6.766944 CGTCTATATACATCTGTAGTAGGGGG 59.233 46.154 10.31 0.00 33.52 5.40
428 441 6.766944 CCGTCTATATACATCTGTAGTAGGGG 59.233 46.154 10.31 9.02 33.52 4.79
430 443 7.823310 ACACCGTCTATATACATCTGTAGTAGG 59.177 40.741 10.31 0.00 33.52 3.18
431 444 8.774890 ACACCGTCTATATACATCTGTAGTAG 57.225 38.462 0.00 2.35 33.52 2.57
432 445 9.866798 CTACACCGTCTATATACATCTGTAGTA 57.133 37.037 0.00 0.00 33.52 1.82
433 446 8.591940 TCTACACCGTCTATATACATCTGTAGT 58.408 37.037 12.18 0.00 33.39 2.73
434 447 8.999220 TCTACACCGTCTATATACATCTGTAG 57.001 38.462 0.00 0.00 33.52 2.74
435 448 8.591940 ACTCTACACCGTCTATATACATCTGTA 58.408 37.037 0.00 0.00 34.67 2.74
436 449 7.451732 ACTCTACACCGTCTATATACATCTGT 58.548 38.462 0.00 0.00 0.00 3.41
437 450 7.603024 TGACTCTACACCGTCTATATACATCTG 59.397 40.741 0.00 0.00 0.00 2.90
438 451 7.677892 TGACTCTACACCGTCTATATACATCT 58.322 38.462 0.00 0.00 0.00 2.90
439 452 7.902387 TGACTCTACACCGTCTATATACATC 57.098 40.000 0.00 0.00 0.00 3.06
440 453 8.865420 ATTGACTCTACACCGTCTATATACAT 57.135 34.615 0.00 0.00 0.00 2.29
441 454 7.935210 TGATTGACTCTACACCGTCTATATACA 59.065 37.037 0.00 0.00 0.00 2.29
442 455 8.320396 TGATTGACTCTACACCGTCTATATAC 57.680 38.462 0.00 0.00 0.00 1.47
443 456 9.516546 AATGATTGACTCTACACCGTCTATATA 57.483 33.333 0.00 0.00 0.00 0.86
444 457 8.410673 AATGATTGACTCTACACCGTCTATAT 57.589 34.615 0.00 0.00 0.00 0.86
445 458 7.818997 AATGATTGACTCTACACCGTCTATA 57.181 36.000 0.00 0.00 0.00 1.31
446 459 6.716934 AATGATTGACTCTACACCGTCTAT 57.283 37.500 0.00 0.00 0.00 1.98
447 460 6.525578 AAATGATTGACTCTACACCGTCTA 57.474 37.500 0.00 0.00 0.00 2.59
448 461 5.407407 AAATGATTGACTCTACACCGTCT 57.593 39.130 0.00 0.00 0.00 4.18
449 462 6.035758 GGTAAAATGATTGACTCTACACCGTC 59.964 42.308 0.00 0.00 0.00 4.79
450 463 5.873164 GGTAAAATGATTGACTCTACACCGT 59.127 40.000 0.00 0.00 0.00 4.83
451 464 5.293569 GGGTAAAATGATTGACTCTACACCG 59.706 44.000 0.00 0.00 0.00 4.94
452 465 5.589050 GGGGTAAAATGATTGACTCTACACC 59.411 44.000 0.00 0.00 0.00 4.16
453 466 5.589050 GGGGGTAAAATGATTGACTCTACAC 59.411 44.000 0.00 0.00 0.00 2.90
454 467 5.491078 AGGGGGTAAAATGATTGACTCTACA 59.509 40.000 0.00 0.00 0.00 2.74
455 468 6.002653 AGGGGGTAAAATGATTGACTCTAC 57.997 41.667 0.00 0.00 0.00 2.59
456 469 7.349859 ACATAGGGGGTAAAATGATTGACTCTA 59.650 37.037 0.00 0.00 0.00 2.43
457 470 6.160459 ACATAGGGGGTAAAATGATTGACTCT 59.840 38.462 0.00 0.00 0.00 3.24
458 471 6.365520 ACATAGGGGGTAAAATGATTGACTC 58.634 40.000 0.00 0.00 0.00 3.36
459 472 6.341408 ACATAGGGGGTAAAATGATTGACT 57.659 37.500 0.00 0.00 0.00 3.41
460 473 7.287810 ACTACATAGGGGGTAAAATGATTGAC 58.712 38.462 0.00 0.00 0.00 3.18
461 474 7.349859 AGACTACATAGGGGGTAAAATGATTGA 59.650 37.037 0.00 0.00 0.00 2.57
462 475 7.518188 AGACTACATAGGGGGTAAAATGATTG 58.482 38.462 0.00 0.00 0.00 2.67
463 476 7.572861 AGAGACTACATAGGGGGTAAAATGATT 59.427 37.037 0.00 0.00 0.00 2.57
464 477 7.082972 AGAGACTACATAGGGGGTAAAATGAT 58.917 38.462 0.00 0.00 0.00 2.45
465 478 6.449956 AGAGACTACATAGGGGGTAAAATGA 58.550 40.000 0.00 0.00 0.00 2.57
466 479 6.749036 AGAGACTACATAGGGGGTAAAATG 57.251 41.667 0.00 0.00 0.00 2.32
467 480 8.881262 CAATAGAGACTACATAGGGGGTAAAAT 58.119 37.037 0.00 0.00 0.00 1.82
468 481 7.202066 GCAATAGAGACTACATAGGGGGTAAAA 60.202 40.741 0.00 0.00 0.00 1.52
469 482 6.269307 GCAATAGAGACTACATAGGGGGTAAA 59.731 42.308 0.00 0.00 0.00 2.01
470 483 5.778750 GCAATAGAGACTACATAGGGGGTAA 59.221 44.000 0.00 0.00 0.00 2.85
471 484 5.162914 TGCAATAGAGACTACATAGGGGGTA 60.163 44.000 0.00 0.00 0.00 3.69
472 485 4.161102 GCAATAGAGACTACATAGGGGGT 58.839 47.826 0.00 0.00 0.00 4.95
473 486 4.160329 TGCAATAGAGACTACATAGGGGG 58.840 47.826 0.00 0.00 0.00 5.40
474 487 5.808366 TTGCAATAGAGACTACATAGGGG 57.192 43.478 0.00 0.00 0.00 4.79
475 488 8.976353 AGATATTGCAATAGAGACTACATAGGG 58.024 37.037 22.76 0.00 0.00 3.53
503 516 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
504 517 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
505 518 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
506 519 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
507 520 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
508 521 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
509 522 8.305317 CCTACTCCCTCCGTTTCTAAATATAAG 58.695 40.741 0.00 0.00 0.00 1.73
510 523 7.786464 ACCTACTCCCTCCGTTTCTAAATATAA 59.214 37.037 0.00 0.00 0.00 0.98
511 524 7.232127 CACCTACTCCCTCCGTTTCTAAATATA 59.768 40.741 0.00 0.00 0.00 0.86
512 525 6.041751 CACCTACTCCCTCCGTTTCTAAATAT 59.958 42.308 0.00 0.00 0.00 1.28
513 526 5.361857 CACCTACTCCCTCCGTTTCTAAATA 59.638 44.000 0.00 0.00 0.00 1.40
514 527 4.161754 CACCTACTCCCTCCGTTTCTAAAT 59.838 45.833 0.00 0.00 0.00 1.40
515 528 3.512724 CACCTACTCCCTCCGTTTCTAAA 59.487 47.826 0.00 0.00 0.00 1.85
516 529 3.094572 CACCTACTCCCTCCGTTTCTAA 58.905 50.000 0.00 0.00 0.00 2.10
517 530 2.731572 CACCTACTCCCTCCGTTTCTA 58.268 52.381 0.00 0.00 0.00 2.10
518 531 1.558233 CACCTACTCCCTCCGTTTCT 58.442 55.000 0.00 0.00 0.00 2.52
519 532 0.108281 GCACCTACTCCCTCCGTTTC 60.108 60.000 0.00 0.00 0.00 2.78
520 533 1.551019 GGCACCTACTCCCTCCGTTT 61.551 60.000 0.00 0.00 0.00 3.60
521 534 1.988406 GGCACCTACTCCCTCCGTT 60.988 63.158 0.00 0.00 0.00 4.44
522 535 2.363925 GGCACCTACTCCCTCCGT 60.364 66.667 0.00 0.00 0.00 4.69
523 536 2.363795 TGGCACCTACTCCCTCCG 60.364 66.667 0.00 0.00 0.00 4.63
524 537 0.399233 ATCTGGCACCTACTCCCTCC 60.399 60.000 0.00 0.00 0.00 4.30
525 538 1.044611 GATCTGGCACCTACTCCCTC 58.955 60.000 0.00 0.00 0.00 4.30
526 539 0.339859 TGATCTGGCACCTACTCCCT 59.660 55.000 0.00 0.00 0.00 4.20
527 540 1.139853 CTTGATCTGGCACCTACTCCC 59.860 57.143 0.00 0.00 0.00 4.30
528 541 1.139853 CCTTGATCTGGCACCTACTCC 59.860 57.143 0.00 0.00 0.00 3.85
529 542 2.111384 TCCTTGATCTGGCACCTACTC 58.889 52.381 0.00 0.00 0.00 2.59
530 543 2.254152 TCCTTGATCTGGCACCTACT 57.746 50.000 0.00 0.00 0.00 2.57
531 544 3.567478 ATTCCTTGATCTGGCACCTAC 57.433 47.619 0.00 0.00 0.00 3.18
532 545 4.968719 TCTTATTCCTTGATCTGGCACCTA 59.031 41.667 0.00 0.00 0.00 3.08
533 546 3.782523 TCTTATTCCTTGATCTGGCACCT 59.217 43.478 0.00 0.00 0.00 4.00
534 547 4.156455 TCTTATTCCTTGATCTGGCACC 57.844 45.455 0.00 0.00 0.00 5.01
535 548 5.824624 TGAATCTTATTCCTTGATCTGGCAC 59.175 40.000 0.00 0.00 0.00 5.01
536 549 5.824624 GTGAATCTTATTCCTTGATCTGGCA 59.175 40.000 0.00 0.00 0.00 4.92
537 550 6.060788 AGTGAATCTTATTCCTTGATCTGGC 58.939 40.000 0.00 0.00 0.00 4.85
579 1654 5.010282 ACTTAGCCACACCCATTTTCTAAG 58.990 41.667 0.00 0.00 38.15 2.18
589 1664 0.977395 ACTGAGACTTAGCCACACCC 59.023 55.000 0.00 0.00 0.00 4.61
590 1665 1.402984 CGACTGAGACTTAGCCACACC 60.403 57.143 0.00 0.00 0.00 4.16
592 1667 1.540267 GTCGACTGAGACTTAGCCACA 59.460 52.381 8.70 0.00 38.09 4.17
593 1668 2.265647 GTCGACTGAGACTTAGCCAC 57.734 55.000 8.70 0.00 38.09 5.01
601 1676 8.516811 TTGATTAAGTTTAAGTCGACTGAGAC 57.483 34.615 20.85 17.23 41.23 3.36
602 1677 8.358148 ACTTGATTAAGTTTAAGTCGACTGAGA 58.642 33.333 20.85 3.38 44.57 3.27
603 1678 8.522178 ACTTGATTAAGTTTAAGTCGACTGAG 57.478 34.615 20.85 0.00 44.57 3.35
604 1679 8.516811 GACTTGATTAAGTTTAAGTCGACTGA 57.483 34.615 20.85 9.19 46.79 3.41
615 1690 9.832445 TCACTTGACTAAGACTTGATTAAGTTT 57.168 29.630 4.16 0.00 46.79 2.66
637 1712 5.050126 TGAGACGGAGGAAGTATATCACT 57.950 43.478 0.00 0.00 40.05 3.41
638 1713 5.769484 TTGAGACGGAGGAAGTATATCAC 57.231 43.478 0.00 0.00 0.00 3.06
639 1714 6.785337 TTTTGAGACGGAGGAAGTATATCA 57.215 37.500 0.00 0.00 0.00 2.15
640 1715 8.664211 AAATTTTGAGACGGAGGAAGTATATC 57.336 34.615 0.00 0.00 0.00 1.63
642 1717 9.595823 CTTAAATTTTGAGACGGAGGAAGTATA 57.404 33.333 0.00 0.00 0.00 1.47
643 1718 8.319146 TCTTAAATTTTGAGACGGAGGAAGTAT 58.681 33.333 0.00 0.00 0.00 2.12
644 1719 7.601508 GTCTTAAATTTTGAGACGGAGGAAGTA 59.398 37.037 15.63 0.00 31.54 2.24
645 1720 6.427242 GTCTTAAATTTTGAGACGGAGGAAGT 59.573 38.462 15.63 0.00 31.54 3.01
646 1721 6.426937 TGTCTTAAATTTTGAGACGGAGGAAG 59.573 38.462 21.90 6.35 42.02 3.46
647 1722 6.292923 TGTCTTAAATTTTGAGACGGAGGAA 58.707 36.000 21.90 7.25 42.02 3.36
648 1723 5.860611 TGTCTTAAATTTTGAGACGGAGGA 58.139 37.500 21.90 7.80 42.02 3.71
649 1724 6.426937 TCTTGTCTTAAATTTTGAGACGGAGG 59.573 38.462 21.90 14.38 42.02 4.30
650 1725 7.421530 TCTTGTCTTAAATTTTGAGACGGAG 57.578 36.000 21.90 20.79 42.02 4.63
651 1726 7.795482 TTCTTGTCTTAAATTTTGAGACGGA 57.205 32.000 21.90 19.39 42.02 4.69
652 1727 9.463443 AAATTCTTGTCTTAAATTTTGAGACGG 57.537 29.630 21.90 18.03 42.02 4.79
679 1754 9.971922 CCAAAATTCTTGTCTTAGATTTGTCTT 57.028 29.630 0.00 0.00 28.79 3.01
680 1755 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
681 1756 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
682 1757 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
683 1758 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
684 1759 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
685 1760 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
686 1761 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
687 1762 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
688 1763 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
689 1764 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
690 1765 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
691 1766 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
692 1767 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
693 1768 2.107552 TCCTCCGTCCCAAAATTCTTGT 59.892 45.455 0.00 0.00 0.00 3.16
694 1769 2.790433 TCCTCCGTCCCAAAATTCTTG 58.210 47.619 0.00 0.00 0.00 3.02
695 1770 3.181433 ACTTCCTCCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
696 1771 2.375509 ACTTCCTCCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
697 1772 2.791655 ACTTCCTCCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
698 1773 2.971901 ACTTCCTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
699 1774 4.720273 ACTATACTTCCTCCGTCCCAAAAT 59.280 41.667 0.00 0.00 0.00 1.82
700 1775 4.098894 ACTATACTTCCTCCGTCCCAAAA 58.901 43.478 0.00 0.00 0.00 2.44
701 1776 3.716431 ACTATACTTCCTCCGTCCCAAA 58.284 45.455 0.00 0.00 0.00 3.28
702 1777 3.393426 ACTATACTTCCTCCGTCCCAA 57.607 47.619 0.00 0.00 0.00 4.12
703 1778 4.736611 ATACTATACTTCCTCCGTCCCA 57.263 45.455 0.00 0.00 0.00 4.37
704 1779 8.270744 TCTTATATACTATACTTCCTCCGTCCC 58.729 40.741 0.00 0.00 0.00 4.46
705 1780 9.678260 TTCTTATATACTATACTTCCTCCGTCC 57.322 37.037 0.00 0.00 0.00 4.79
752 1827 8.081633 TCTTGCATGAAGATTCGTACAATTTTT 58.918 29.630 0.00 0.00 35.64 1.94
753 1828 7.592938 TCTTGCATGAAGATTCGTACAATTTT 58.407 30.769 0.00 0.00 35.64 1.82
754 1829 7.144722 TCTTGCATGAAGATTCGTACAATTT 57.855 32.000 0.00 0.00 35.64 1.82
755 1830 6.741992 TCTTGCATGAAGATTCGTACAATT 57.258 33.333 0.00 0.00 35.64 2.32
766 1841 3.423749 TGCCTTTGATCTTGCATGAAGA 58.576 40.909 6.36 3.41 45.03 2.87
767 1842 3.861276 TGCCTTTGATCTTGCATGAAG 57.139 42.857 6.36 0.00 0.00 3.02
768 1843 4.705991 TGTATGCCTTTGATCTTGCATGAA 59.294 37.500 16.63 0.00 43.76 2.57
769 1844 4.271661 TGTATGCCTTTGATCTTGCATGA 58.728 39.130 16.63 4.57 43.76 3.07
770 1845 4.642445 TGTATGCCTTTGATCTTGCATG 57.358 40.909 16.63 0.00 43.76 4.06
771 1846 5.864418 ATTGTATGCCTTTGATCTTGCAT 57.136 34.783 13.51 13.51 45.67 3.96
772 1847 6.293571 CGATATTGTATGCCTTTGATCTTGCA 60.294 38.462 0.00 0.00 38.23 4.08
773 1848 6.073058 TCGATATTGTATGCCTTTGATCTTGC 60.073 38.462 0.00 0.00 0.00 4.01
774 1849 7.172190 AGTCGATATTGTATGCCTTTGATCTTG 59.828 37.037 0.00 0.00 0.00 3.02
775 1850 7.172190 CAGTCGATATTGTATGCCTTTGATCTT 59.828 37.037 0.00 0.00 0.00 2.40
776 1851 6.648310 CAGTCGATATTGTATGCCTTTGATCT 59.352 38.462 0.00 0.00 0.00 2.75
777 1852 6.646653 TCAGTCGATATTGTATGCCTTTGATC 59.353 38.462 0.00 0.00 0.00 2.92
778 1853 6.524734 TCAGTCGATATTGTATGCCTTTGAT 58.475 36.000 0.00 0.00 0.00 2.57
779 1854 5.912892 TCAGTCGATATTGTATGCCTTTGA 58.087 37.500 0.00 0.00 0.00 2.69
780 1855 5.985530 TCTCAGTCGATATTGTATGCCTTTG 59.014 40.000 0.00 0.00 0.00 2.77
781 1856 5.986135 GTCTCAGTCGATATTGTATGCCTTT 59.014 40.000 0.00 0.00 0.00 3.11
782 1857 5.069119 TGTCTCAGTCGATATTGTATGCCTT 59.931 40.000 0.00 0.00 0.00 4.35
783 1858 4.584743 TGTCTCAGTCGATATTGTATGCCT 59.415 41.667 0.00 0.00 0.00 4.75
784 1859 4.871513 TGTCTCAGTCGATATTGTATGCC 58.128 43.478 0.00 0.00 0.00 4.40
785 1860 7.201274 CGTTATGTCTCAGTCGATATTGTATGC 60.201 40.741 0.00 0.00 0.00 3.14
786 1861 8.015658 TCGTTATGTCTCAGTCGATATTGTATG 58.984 37.037 0.00 0.00 0.00 2.39
787 1862 8.095937 TCGTTATGTCTCAGTCGATATTGTAT 57.904 34.615 0.00 0.00 0.00 2.29
788 1863 7.486802 TCGTTATGTCTCAGTCGATATTGTA 57.513 36.000 0.00 0.00 0.00 2.41
789 1864 6.373186 TCGTTATGTCTCAGTCGATATTGT 57.627 37.500 0.00 0.00 0.00 2.71
790 1865 6.913132 ACTTCGTTATGTCTCAGTCGATATTG 59.087 38.462 0.00 0.00 0.00 1.90
791 1866 7.028926 ACTTCGTTATGTCTCAGTCGATATT 57.971 36.000 0.00 0.00 0.00 1.28
792 1867 6.621316 ACTTCGTTATGTCTCAGTCGATAT 57.379 37.500 0.00 0.00 0.00 1.63
793 1868 6.432607 AACTTCGTTATGTCTCAGTCGATA 57.567 37.500 0.00 0.00 0.00 2.92
794 1869 4.966965 ACTTCGTTATGTCTCAGTCGAT 57.033 40.909 0.00 0.00 0.00 3.59
795 1870 4.761235 AACTTCGTTATGTCTCAGTCGA 57.239 40.909 0.00 0.00 0.00 4.20
796 1871 5.824243 AAAACTTCGTTATGTCTCAGTCG 57.176 39.130 0.00 0.00 0.00 4.18
797 1872 7.870588 ACTAAAACTTCGTTATGTCTCAGTC 57.129 36.000 0.00 0.00 0.00 3.51
798 1873 7.924412 TCAACTAAAACTTCGTTATGTCTCAGT 59.076 33.333 0.00 0.00 0.00 3.41
799 1874 8.215132 GTCAACTAAAACTTCGTTATGTCTCAG 58.785 37.037 0.00 0.00 0.00 3.35
800 1875 7.924412 AGTCAACTAAAACTTCGTTATGTCTCA 59.076 33.333 0.00 0.00 0.00 3.27
801 1876 8.215132 CAGTCAACTAAAACTTCGTTATGTCTC 58.785 37.037 0.00 0.00 0.00 3.36
802 1877 7.924412 TCAGTCAACTAAAACTTCGTTATGTCT 59.076 33.333 0.00 0.00 0.00 3.41
803 1878 8.068893 TCAGTCAACTAAAACTTCGTTATGTC 57.931 34.615 0.00 0.00 0.00 3.06
804 1879 7.924412 TCTCAGTCAACTAAAACTTCGTTATGT 59.076 33.333 0.00 0.00 0.00 2.29
805 1880 8.215132 GTCTCAGTCAACTAAAACTTCGTTATG 58.785 37.037 0.00 0.00 0.00 1.90
806 1881 8.142551 AGTCTCAGTCAACTAAAACTTCGTTAT 58.857 33.333 0.00 0.00 0.00 1.89
807 1882 7.486647 AGTCTCAGTCAACTAAAACTTCGTTA 58.513 34.615 0.00 0.00 0.00 3.18
808 1883 6.338937 AGTCTCAGTCAACTAAAACTTCGTT 58.661 36.000 0.00 0.00 0.00 3.85
809 1884 5.903810 AGTCTCAGTCAACTAAAACTTCGT 58.096 37.500 0.00 0.00 0.00 3.85
810 1885 6.830114 AAGTCTCAGTCAACTAAAACTTCG 57.170 37.500 0.00 0.00 0.00 3.79
811 1886 7.438459 TGCTAAGTCTCAGTCAACTAAAACTTC 59.562 37.037 6.53 0.00 0.00 3.01
812 1887 7.272978 TGCTAAGTCTCAGTCAACTAAAACTT 58.727 34.615 7.78 7.78 0.00 2.66
813 1888 6.817184 TGCTAAGTCTCAGTCAACTAAAACT 58.183 36.000 0.00 0.00 0.00 2.66
814 1889 7.478520 TTGCTAAGTCTCAGTCAACTAAAAC 57.521 36.000 0.00 0.00 0.00 2.43
815 1890 8.395633 GTTTTGCTAAGTCTCAGTCAACTAAAA 58.604 33.333 0.00 0.00 0.00 1.52
816 1891 7.769044 AGTTTTGCTAAGTCTCAGTCAACTAAA 59.231 33.333 0.00 0.00 0.00 1.85
817 1892 7.224753 CAGTTTTGCTAAGTCTCAGTCAACTAA 59.775 37.037 0.00 0.00 0.00 2.24
818 1893 6.701841 CAGTTTTGCTAAGTCTCAGTCAACTA 59.298 38.462 0.00 0.00 0.00 2.24
819 1894 5.525378 CAGTTTTGCTAAGTCTCAGTCAACT 59.475 40.000 0.00 0.00 0.00 3.16
820 1895 5.294552 ACAGTTTTGCTAAGTCTCAGTCAAC 59.705 40.000 0.00 0.00 0.00 3.18
821 1896 5.428253 ACAGTTTTGCTAAGTCTCAGTCAA 58.572 37.500 0.00 0.00 0.00 3.18
822 1897 5.023533 ACAGTTTTGCTAAGTCTCAGTCA 57.976 39.130 0.00 0.00 0.00 3.41
823 1898 5.993106 AACAGTTTTGCTAAGTCTCAGTC 57.007 39.130 0.00 0.00 0.00 3.51
824 1899 7.859325 TTTAACAGTTTTGCTAAGTCTCAGT 57.141 32.000 0.00 0.00 0.00 3.41
959 2036 2.223157 CGCGTTCCAGAGTCTTCTAGAG 60.223 54.545 0.00 0.00 30.73 2.43
1019 2126 4.577246 GGCTGTCTAGGGCGCGAG 62.577 72.222 12.10 4.43 0.00 5.03
1039 2168 1.007607 ATTGGGATTTCGGGGAAGGT 58.992 50.000 0.00 0.00 0.00 3.50
1042 2171 1.003646 TGGATTGGGATTTCGGGGAA 58.996 50.000 0.00 0.00 0.00 3.97
1043 2172 0.550914 CTGGATTGGGATTTCGGGGA 59.449 55.000 0.00 0.00 0.00 4.81
1044 2173 0.550914 TCTGGATTGGGATTTCGGGG 59.449 55.000 0.00 0.00 0.00 5.73
1071 2204 1.392131 GGGGAATTTGGGGGAAGCT 59.608 57.895 0.00 0.00 0.00 3.74
1072 2205 1.080170 TGGGGAATTTGGGGGAAGC 59.920 57.895 0.00 0.00 0.00 3.86
1610 2744 4.129737 ATGGCCTCGTCGACACCG 62.130 66.667 17.16 1.38 37.07 4.94
1713 2847 9.303116 TGAACTTTGGGCAAATACTAAAGAATA 57.697 29.630 8.01 0.00 33.71 1.75
1716 2850 7.001674 TCTGAACTTTGGGCAAATACTAAAGA 58.998 34.615 8.01 0.00 33.71 2.52
1717 2851 7.214467 TCTGAACTTTGGGCAAATACTAAAG 57.786 36.000 0.00 0.00 35.18 1.85
1724 2858 4.067192 GCAAATCTGAACTTTGGGCAAAT 58.933 39.130 6.03 0.00 34.81 2.32
1729 2863 5.241506 TCAGTAAGCAAATCTGAACTTTGGG 59.758 40.000 6.03 0.00 35.65 4.12
1799 2936 7.630470 CAAACTTCTTTTGTGTGTGTTTGTA 57.370 32.000 0.00 0.00 39.96 2.41
1815 2952 4.423625 ACAGTCCTTAGCACAAACTTCT 57.576 40.909 0.00 0.00 0.00 2.85
1818 2955 3.901844 TCCTACAGTCCTTAGCACAAACT 59.098 43.478 0.00 0.00 0.00 2.66
1819 2956 4.267349 TCCTACAGTCCTTAGCACAAAC 57.733 45.455 0.00 0.00 0.00 2.93
1833 2970 2.350498 CGCCGTTTGGTTAATCCTACAG 59.650 50.000 0.00 0.00 37.67 2.74
1851 2988 4.561105 TGGAACAATAAAATCAAACCGCC 58.439 39.130 0.00 0.00 31.92 6.13
1877 3014 2.158769 TCACTGTCAGCAGACCAAATGT 60.159 45.455 6.80 0.00 45.28 2.71
1882 3019 2.529632 ACTATCACTGTCAGCAGACCA 58.470 47.619 6.80 0.00 45.28 4.02
1911 3048 4.147321 AGGCATTCTCACAATTCACAACT 58.853 39.130 0.00 0.00 0.00 3.16
1913 3050 6.839124 ATTAGGCATTCTCACAATTCACAA 57.161 33.333 0.00 0.00 0.00 3.33
1950 3087 3.381045 GCTCATATGCGCAGTTAGTACA 58.619 45.455 18.32 0.00 0.00 2.90
1965 3102 4.665833 AACAAGTACCATAGCGCTCATA 57.334 40.909 16.34 0.00 0.00 2.15
2013 3150 7.365497 TCATCCTTGCTTATGTCTCTAATCA 57.635 36.000 0.00 0.00 0.00 2.57
2024 3161 7.893124 ATCAACTCATTTCATCCTTGCTTAT 57.107 32.000 0.00 0.00 0.00 1.73
2026 3164 7.778853 AGATATCAACTCATTTCATCCTTGCTT 59.221 33.333 5.32 0.00 0.00 3.91
2142 3311 1.346068 CCCTTATGCTCCTCAGCCTAC 59.654 57.143 0.00 0.00 46.26 3.18
2181 3350 1.768870 GCCTCCCCAACTAGCTAATCA 59.231 52.381 0.00 0.00 0.00 2.57
2182 3351 1.768870 TGCCTCCCCAACTAGCTAATC 59.231 52.381 0.00 0.00 0.00 1.75
2207 3376 1.705186 ACTGGCAGTGGAAGTGGTAAT 59.295 47.619 21.37 0.00 37.87 1.89
2226 3395 7.275920 AGTACATCAAATATGGTCCTTGAGAC 58.724 38.462 0.00 0.00 45.51 3.36
2249 3418 8.348285 TGCTGCCTTTTTAAACTATGATTAGT 57.652 30.769 0.00 0.00 40.48 2.24
2250 3419 9.294030 CTTGCTGCCTTTTTAAACTATGATTAG 57.706 33.333 0.00 0.00 0.00 1.73
2251 3420 7.759433 GCTTGCTGCCTTTTTAAACTATGATTA 59.241 33.333 0.00 0.00 35.15 1.75
2252 3421 6.591448 GCTTGCTGCCTTTTTAAACTATGATT 59.409 34.615 0.00 0.00 35.15 2.57
2253 3422 6.101997 GCTTGCTGCCTTTTTAAACTATGAT 58.898 36.000 0.00 0.00 35.15 2.45
2254 3423 5.469479 GCTTGCTGCCTTTTTAAACTATGA 58.531 37.500 0.00 0.00 35.15 2.15
2255 3424 4.324402 CGCTTGCTGCCTTTTTAAACTATG 59.676 41.667 0.00 0.00 38.78 2.23
2256 3425 4.485163 CGCTTGCTGCCTTTTTAAACTAT 58.515 39.130 0.00 0.00 38.78 2.12
2257 3426 3.855524 GCGCTTGCTGCCTTTTTAAACTA 60.856 43.478 0.00 0.00 38.78 2.24
2258 3427 2.742774 CGCTTGCTGCCTTTTTAAACT 58.257 42.857 0.00 0.00 38.78 2.66
2259 3428 1.192312 GCGCTTGCTGCCTTTTTAAAC 59.808 47.619 0.00 0.00 38.78 2.01
2260 3429 1.496934 GCGCTTGCTGCCTTTTTAAA 58.503 45.000 0.00 0.00 38.78 1.52
2261 3430 3.193471 GCGCTTGCTGCCTTTTTAA 57.807 47.368 0.00 0.00 38.78 1.52
2262 3431 4.963815 GCGCTTGCTGCCTTTTTA 57.036 50.000 0.00 0.00 38.78 1.52
2278 3447 3.410958 GCCTAGGCGCACTTAAGC 58.589 61.111 20.16 0.00 0.00 3.09
2289 3458 3.176924 TCCTATTGCCTAGAGCCTAGG 57.823 52.381 18.85 18.85 42.91 3.02
2290 3459 5.301555 GTTTTCCTATTGCCTAGAGCCTAG 58.698 45.833 0.00 3.06 42.71 3.02
2291 3460 4.202223 CGTTTTCCTATTGCCTAGAGCCTA 60.202 45.833 0.00 0.00 42.71 3.93
2292 3461 3.432326 CGTTTTCCTATTGCCTAGAGCCT 60.432 47.826 0.00 0.00 42.71 4.58
2293 3462 2.872858 CGTTTTCCTATTGCCTAGAGCC 59.127 50.000 0.00 0.00 42.71 4.70
2294 3463 2.288186 GCGTTTTCCTATTGCCTAGAGC 59.712 50.000 0.00 0.00 44.14 4.09
2295 3464 2.872858 GGCGTTTTCCTATTGCCTAGAG 59.127 50.000 0.00 0.00 42.44 2.43
2296 3465 2.914059 GGCGTTTTCCTATTGCCTAGA 58.086 47.619 0.00 0.00 42.44 2.43
2300 3469 1.333931 GCTAGGCGTTTTCCTATTGCC 59.666 52.381 0.00 0.00 46.07 4.52
2301 3470 2.757686 GCTAGGCGTTTTCCTATTGC 57.242 50.000 0.00 0.00 38.01 3.56
2322 3491 3.294102 CGCATGCTTATGTGCAGTTATG 58.706 45.455 17.13 0.00 46.71 1.90
2323 3492 3.614159 CGCATGCTTATGTGCAGTTAT 57.386 42.857 17.13 0.00 46.71 1.89
2337 3506 2.267188 TTTCTCATCAAAGCGCATGC 57.733 45.000 11.47 7.91 43.24 4.06
2338 3507 3.058520 CGTTTTTCTCATCAAAGCGCATG 59.941 43.478 11.47 8.75 32.31 4.06
2339 3508 3.236816 CGTTTTTCTCATCAAAGCGCAT 58.763 40.909 11.47 0.00 32.31 4.73
2340 3509 2.649516 CGTTTTTCTCATCAAAGCGCA 58.350 42.857 11.47 0.00 32.31 6.09
2342 3511 2.649516 TGCGTTTTTCTCATCAAAGCG 58.350 42.857 0.00 0.00 39.85 4.68
2343 3512 3.426525 CCTTGCGTTTTTCTCATCAAAGC 59.573 43.478 0.00 0.00 0.00 3.51
2344 3513 3.426525 GCCTTGCGTTTTTCTCATCAAAG 59.573 43.478 0.00 0.00 0.00 2.77
2345 3514 3.380142 GCCTTGCGTTTTTCTCATCAAA 58.620 40.909 0.00 0.00 0.00 2.69
2346 3515 3.011949 GCCTTGCGTTTTTCTCATCAA 57.988 42.857 0.00 0.00 0.00 2.57
2347 3516 2.704725 GCCTTGCGTTTTTCTCATCA 57.295 45.000 0.00 0.00 0.00 3.07
2360 3529 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
2361 3530 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
2362 3531 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
2365 3534 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
2366 3535 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
2367 3536 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
2368 3537 2.097637 CGTTAATTGTGCGTTTTGCCAC 60.098 45.455 0.00 0.00 45.60 5.01
2369 3538 2.120232 CGTTAATTGTGCGTTTTGCCA 58.880 42.857 0.00 0.00 45.60 4.92
2370 3539 1.136748 GCGTTAATTGTGCGTTTTGCC 60.137 47.619 0.00 0.00 45.60 4.52
2371 3540 1.136748 GGCGTTAATTGTGCGTTTTGC 60.137 47.619 0.00 0.00 46.70 3.68
2372 3541 2.389998 AGGCGTTAATTGTGCGTTTTG 58.610 42.857 0.00 0.00 0.00 2.44
2373 3542 2.785713 AGGCGTTAATTGTGCGTTTT 57.214 40.000 0.00 0.00 0.00 2.43
2374 3543 2.413634 GCTAGGCGTTAATTGTGCGTTT 60.414 45.455 0.00 0.00 0.00 3.60
2375 3544 1.129811 GCTAGGCGTTAATTGTGCGTT 59.870 47.619 0.00 0.00 0.00 4.84
2376 3545 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24
2377 3546 3.509266 GCTAGGCGTTAATTGTGCG 57.491 52.632 0.00 0.00 0.00 5.34
2432 3601 7.757097 TGAACTAAGATAGTCAGAAAATCGC 57.243 36.000 0.00 0.00 38.26 4.58
2441 3610 9.607988 TGTTTGAACTTTGAACTAAGATAGTCA 57.392 29.630 3.42 0.00 38.26 3.41
2447 3616 8.573035 AGTTTGTGTTTGAACTTTGAACTAAGA 58.427 29.630 3.42 0.00 32.43 2.10
2601 3812 9.701098 AGCATAAAATTTCAACCATAGCATATG 57.299 29.630 0.00 0.00 0.00 1.78
2602 3813 9.918630 GAGCATAAAATTTCAACCATAGCATAT 57.081 29.630 0.00 0.00 0.00 1.78
2616 3827 8.302515 ACAGATCTCCAATGAGCATAAAATTT 57.697 30.769 0.00 0.00 38.58 1.82
2670 3881 0.449388 GCCTCTTCAAATGCCTGTCG 59.551 55.000 0.00 0.00 0.00 4.35
2860 4071 5.514279 CAACAGACTCAATGAACCAAGAAC 58.486 41.667 0.00 0.00 0.00 3.01
2937 4148 7.377766 TGTATTGATTACCAGCAGTTCTTTC 57.622 36.000 0.00 0.00 0.00 2.62
2947 4158 3.498397 GCCGGTGATGTATTGATTACCAG 59.502 47.826 1.90 0.00 32.65 4.00
2948 4159 3.118223 TGCCGGTGATGTATTGATTACCA 60.118 43.478 1.90 0.00 32.65 3.25
2986 4197 1.777272 AGGTATGCCCCCATTCTCTTC 59.223 52.381 0.00 0.00 34.57 2.87
3002 4213 2.677836 GCAATTGCTGATTGTCGAGGTA 59.322 45.455 23.21 0.00 45.62 3.08
3070 4483 4.399303 CCAGAATCATCACTTTGGGGTTAC 59.601 45.833 0.00 0.00 0.00 2.50
3156 4570 4.772886 ACTCAGGTAAGACAACAAACCT 57.227 40.909 0.00 0.00 43.15 3.50
3169 4583 6.459670 TGATAATTAGTCGCAACTCAGGTA 57.540 37.500 0.00 0.00 36.92 3.08
3366 4780 1.877637 TCACTCCACGGACAAACATG 58.122 50.000 0.00 0.00 0.00 3.21
3369 4783 2.875933 TCATTTCACTCCACGGACAAAC 59.124 45.455 0.00 0.00 0.00 2.93
3409 4823 5.157940 AGCTGAGAAGCTTGAGTATTTGA 57.842 39.130 2.10 0.00 43.52 2.69
3462 4876 6.068010 TCTCTAATCAAAAGCAAACCCTCAA 58.932 36.000 0.00 0.00 0.00 3.02
3589 5003 4.564940 ACGATTACGGAAGACATAGACC 57.435 45.455 0.00 0.00 44.46 3.85
3609 5024 5.499139 TGACCAGATGAAAAACTCACAAC 57.501 39.130 0.00 0.00 36.69 3.32
3644 5059 6.934645 CAGTTCCTCACCAATACTACTTTTCA 59.065 38.462 0.00 0.00 0.00 2.69
3656 5071 1.055849 TAGCAGCAGTTCCTCACCAA 58.944 50.000 0.00 0.00 0.00 3.67
3749 5207 2.547218 GCCTACGCATTTTCTATCCCGA 60.547 50.000 0.00 0.00 34.03 5.14
3766 5224 2.294791 CCAAAAACCATTGTCACGCCTA 59.705 45.455 0.00 0.00 0.00 3.93
3776 5234 0.107643 CCCCAACGCCAAAAACCATT 59.892 50.000 0.00 0.00 0.00 3.16
3785 5243 4.904590 CAACCACCCCCAACGCCA 62.905 66.667 0.00 0.00 0.00 5.69
3791 5249 3.182263 CCCTCACAACCACCCCCA 61.182 66.667 0.00 0.00 0.00 4.96
3833 5309 2.825836 GCAGATTGCTCCCCACCG 60.826 66.667 0.00 0.00 40.96 4.94
3846 5322 0.955919 TCTTCGAGCGACAGAGCAGA 60.956 55.000 0.00 0.00 40.15 4.26
3855 5331 3.595173 TGATTCCAATTTCTTCGAGCGA 58.405 40.909 0.00 0.00 0.00 4.93
3860 5336 5.457799 GCATCACATGATTCCAATTTCTTCG 59.542 40.000 0.00 0.00 31.21 3.79
3931 5407 2.766263 AGATAGATGCAAGGAACCGTCA 59.234 45.455 0.00 0.00 0.00 4.35
3948 5424 5.925506 TCACCATACTTTCGGTTCAGATA 57.074 39.130 0.00 0.00 31.41 1.98
3988 5464 4.525686 CCAAACACATTTTGCAAATTCGG 58.474 39.130 13.65 6.31 0.00 4.30
4015 5491 9.455847 GGAGACAGTTGAAAATCAATATATTGC 57.544 33.333 18.89 6.79 38.79 3.56
4079 5555 1.554392 CTCGGAATCGCTGAAGACAG 58.446 55.000 0.00 0.00 45.91 3.51
4136 5612 7.272084 ACTTACAACGTACGTATGAAGACAATC 59.728 37.037 28.44 0.00 0.00 2.67
4151 5627 0.860533 GCACCGCAACTTACAACGTA 59.139 50.000 0.00 0.00 0.00 3.57
4152 5628 0.812412 AGCACCGCAACTTACAACGT 60.812 50.000 0.00 0.00 0.00 3.99
4153 5629 0.306533 AAGCACCGCAACTTACAACG 59.693 50.000 0.00 0.00 0.00 4.10
4154 5630 2.660900 CGTAAGCACCGCAACTTACAAC 60.661 50.000 15.46 0.00 45.52 3.32
4190 5666 4.278419 AGGTCTCAAATTGCCTTGTACAAC 59.722 41.667 3.59 0.00 0.00 3.32
4237 5713 4.349636 TGGGAATCTACTTGACACAAGGAA 59.650 41.667 14.51 3.43 0.00 3.36
4238 5714 3.907474 TGGGAATCTACTTGACACAAGGA 59.093 43.478 14.51 6.38 0.00 3.36
4258 5734 5.122239 TGATTGAAGATTTGTTCTACGCTGG 59.878 40.000 0.00 0.00 33.05 4.85
4313 5789 7.874940 TGGAGACATGTAACAAAGATCAAAAG 58.125 34.615 0.00 0.00 33.40 2.27
4334 5810 2.422597 TGTATCGGTTGTTGCTTGGAG 58.577 47.619 0.00 0.00 0.00 3.86
4340 5816 5.329493 GGTCTTTATTGTATCGGTTGTTGC 58.671 41.667 0.00 0.00 0.00 4.17
4352 5828 3.219281 GTGGTGTGTGGGTCTTTATTGT 58.781 45.455 0.00 0.00 0.00 2.71
4362 5838 1.001068 TGTATACGTGTGGTGTGTGGG 59.999 52.381 0.00 0.00 0.00 4.61
4400 5876 3.812262 TCCATTGATGCCATAGTGTGAG 58.188 45.455 0.00 0.00 0.00 3.51
4411 5887 3.611517 CTTCGATTCGTTCCATTGATGC 58.388 45.455 5.89 0.00 0.00 3.91
4423 5899 0.647410 ATGTTCGCAGCTTCGATTCG 59.353 50.000 9.77 0.00 38.37 3.34
4439 5915 2.540383 TGGTACTCTGGAGCAAGATGT 58.460 47.619 0.00 0.00 0.00 3.06
4458 5934 7.660617 AGAATGGCTACAGATGAACTATGATTG 59.339 37.037 0.00 0.00 0.00 2.67
4480 5956 0.595053 CGCCGACGTATGAGCAGAAT 60.595 55.000 0.00 0.00 33.53 2.40
4486 5962 1.944676 GAAGCCGCCGACGTATGAG 60.945 63.158 0.00 0.00 37.70 2.90
4543 6019 2.036217 TGACCTTTGAATGCTGCCTTTG 59.964 45.455 0.00 0.00 0.00 2.77
4549 6025 4.318332 TGAGTACTGACCTTTGAATGCTG 58.682 43.478 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.