Multiple sequence alignment - TraesCS2A01G406200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G406200 chr2A 100.000 3979 0 0 802 4780 661721475 661725453 0.000000e+00 7348.0
1 TraesCS2A01G406200 chr2A 100.000 522 0 0 1 522 661720674 661721195 0.000000e+00 965.0
2 TraesCS2A01G406200 chr2A 84.886 569 47 16 4230 4780 733098814 733098267 5.440000e-149 538.0
3 TraesCS2A01G406200 chr2B 91.805 3197 154 43 802 3944 609955509 609958651 0.000000e+00 4353.0
4 TraesCS2A01G406200 chr2B 93.617 517 21 9 1 515 609954986 609955492 0.000000e+00 761.0
5 TraesCS2A01G406200 chr2D 93.252 2460 97 31 1518 3944 518035185 518037608 0.000000e+00 3559.0
6 TraesCS2A01G406200 chr2D 88.842 717 41 17 802 1493 518034108 518034810 0.000000e+00 845.0
7 TraesCS2A01G406200 chr2D 90.746 389 16 8 1 388 518033559 518033928 7.140000e-138 501.0
8 TraesCS2A01G406200 chr6A 95.833 408 15 2 4375 4780 530278782 530278375 0.000000e+00 658.0
9 TraesCS2A01G406200 chr6A 84.444 180 15 6 4221 4400 530278956 530278790 1.060000e-36 165.0
10 TraesCS2A01G406200 chr7A 94.595 407 21 1 4375 4780 638566601 638567007 3.140000e-176 628.0
11 TraesCS2A01G406200 chr7A 91.155 407 24 5 4375 4780 716458597 716458202 4.210000e-150 542.0
12 TraesCS2A01G406200 chr7A 78.169 284 52 9 1934 2212 3910356 3910078 6.360000e-39 172.0
13 TraesCS2A01G406200 chr7A 86.228 167 11 3 4234 4400 716458759 716458605 2.290000e-38 171.0
14 TraesCS2A01G406200 chr5D 85.289 571 45 15 4235 4780 536866634 536867190 1.940000e-153 553.0
15 TraesCS2A01G406200 chr5D 94.760 229 11 1 4375 4602 462758682 462758454 5.880000e-94 355.0
16 TraesCS2A01G406200 chr7D 90.284 422 23 11 4377 4780 586688128 586687707 1.960000e-148 536.0
17 TraesCS2A01G406200 chr7D 83.158 190 26 6 3507 3693 567672592 567672778 8.230000e-38 169.0
18 TraesCS2A01G406200 chr6B 89.623 424 25 9 4375 4780 708392368 708392790 5.480000e-144 521.0
19 TraesCS2A01G406200 chr6B 76.667 180 21 14 4234 4404 471310779 471310946 3.970000e-11 80.5
20 TraesCS2A01G406200 chr6B 78.205 156 13 14 4258 4404 567567321 567567178 3.970000e-11 80.5
21 TraesCS2A01G406200 chr3A 89.737 419 25 3 4380 4780 357059706 357059288 1.970000e-143 520.0
22 TraesCS2A01G406200 chr5B 83.502 594 50 31 4231 4780 407241965 407242554 1.190000e-140 510.0
23 TraesCS2A01G406200 chr5B 76.667 180 21 14 4234 4404 613627691 613627858 3.970000e-11 80.5
24 TraesCS2A01G406200 chr5B 75.936 187 24 14 4227 4404 313344327 313344501 5.130000e-10 76.8
25 TraesCS2A01G406200 chr4D 80.142 564 61 38 4230 4780 472924325 472924850 1.620000e-99 374.0
26 TraesCS2A01G406200 chr1D 79.371 286 47 10 1934 2213 233479277 233478998 1.760000e-44 191.0
27 TraesCS2A01G406200 chr1B 78.671 286 49 10 1934 2213 368224306 368224027 3.800000e-41 180.0
28 TraesCS2A01G406200 chr4A 78.246 285 52 8 1934 2213 739522125 739522404 1.770000e-39 174.0
29 TraesCS2A01G406200 chr7B 83.158 190 26 6 3507 3693 621920201 621920387 8.230000e-38 169.0
30 TraesCS2A01G406200 chr7B 83.832 167 16 2 4234 4400 678405048 678405203 1.070000e-31 148.0
31 TraesCS2A01G406200 chr3B 76.630 184 18 18 4229 4402 114600154 114599986 1.430000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G406200 chr2A 661720674 661725453 4779 False 4156.5 7348 100.000000 1 4780 2 chr2A.!!$F1 4779
1 TraesCS2A01G406200 chr2A 733098267 733098814 547 True 538.0 538 84.886000 4230 4780 1 chr2A.!!$R1 550
2 TraesCS2A01G406200 chr2B 609954986 609958651 3665 False 2557.0 4353 92.711000 1 3944 2 chr2B.!!$F1 3943
3 TraesCS2A01G406200 chr2D 518033559 518037608 4049 False 1635.0 3559 90.946667 1 3944 3 chr2D.!!$F1 3943
4 TraesCS2A01G406200 chr6A 530278375 530278956 581 True 411.5 658 90.138500 4221 4780 2 chr6A.!!$R1 559
5 TraesCS2A01G406200 chr7A 716458202 716458759 557 True 356.5 542 88.691500 4234 4780 2 chr7A.!!$R2 546
6 TraesCS2A01G406200 chr5D 536866634 536867190 556 False 553.0 553 85.289000 4235 4780 1 chr5D.!!$F1 545
7 TraesCS2A01G406200 chr5B 407241965 407242554 589 False 510.0 510 83.502000 4231 4780 1 chr5B.!!$F2 549
8 TraesCS2A01G406200 chr4D 472924325 472924850 525 False 374.0 374 80.142000 4230 4780 1 chr4D.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.038166 TTCCTCCCTGCGCTCAAATT 59.962 50.0 9.73 0.0 0.00 1.82 F
943 981 1.269958 CGGAGCCATCTATCCATCCA 58.730 55.0 0.00 0.0 35.14 3.41 F
1972 2441 0.250513 GGAAGAACTCGTGGCAGGAT 59.749 55.0 10.69 0.0 0.00 3.24 F
3265 3749 0.248012 TCGGGTACGTGCACATCAAT 59.752 50.0 18.64 0.0 41.85 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1181 1233 0.721154 CAAACGCAGCGCAGATTAGA 59.279 50.000 16.61 0.00 0.00 2.10 R
2799 3283 0.303493 CCCAAACACGCCGATTATCG 59.697 55.000 7.74 7.74 40.07 2.92 R
3489 3974 1.134175 ACCTTCGCAAACCAACAACAG 59.866 47.619 0.00 0.00 0.00 3.16 R
4125 4621 0.033208 ATCGCCCAAATGGACCATGT 60.033 50.000 8.02 0.00 37.39 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.038166 TTCCTCCCTGCGCTCAAATT 59.962 50.000 9.73 0.00 0.00 1.82
31 32 2.418083 CCCTGCGCTCAAATTCCCC 61.418 63.158 9.73 0.00 0.00 4.81
33 34 2.033448 TGCGCTCAAATTCCCCGT 59.967 55.556 9.73 0.00 0.00 5.28
34 35 1.982073 CTGCGCTCAAATTCCCCGTC 61.982 60.000 9.73 0.00 0.00 4.79
35 36 1.745489 GCGCTCAAATTCCCCGTCT 60.745 57.895 0.00 0.00 0.00 4.18
46 47 4.753662 CCCGTCTCCCCGGTGAGA 62.754 72.222 13.12 13.12 46.66 3.27
299 300 2.285144 AGTTACGGTGGGGAGGGG 60.285 66.667 0.00 0.00 0.00 4.79
319 320 2.358737 CACCTGGAAGTGGACGGC 60.359 66.667 0.00 0.00 33.95 5.68
358 359 2.593956 GGACCCGGACTCTGGCTTT 61.594 63.158 0.73 0.00 0.00 3.51
392 422 1.819288 CGGACTCTGGCTTCTTCAGTA 59.181 52.381 0.00 0.00 34.15 2.74
407 437 6.339587 TCTTCAGTATGTCACATACACACA 57.660 37.500 26.38 9.19 38.01 3.72
408 438 6.156519 TCTTCAGTATGTCACATACACACAC 58.843 40.000 26.38 4.47 38.01 3.82
418 448 1.422977 ATACACACACCCCACAGGCA 61.423 55.000 0.00 0.00 40.58 4.75
900 937 1.476110 GCCGTCTATAAATGCCCACCA 60.476 52.381 0.00 0.00 0.00 4.17
943 981 1.269958 CGGAGCCATCTATCCATCCA 58.730 55.000 0.00 0.00 35.14 3.41
944 982 1.836166 CGGAGCCATCTATCCATCCAT 59.164 52.381 0.00 0.00 35.14 3.41
1050 1102 2.282958 TGCGTCCTCTCCCTCGTT 60.283 61.111 0.00 0.00 0.00 3.85
1143 1195 2.743928 GGAGTTCCGCAGCAGGTG 60.744 66.667 0.00 0.00 0.00 4.00
1158 1210 6.624352 CAGCAGGTGCATATACATAGTTTT 57.376 37.500 4.48 0.00 45.16 2.43
1196 1256 1.819226 CTGCTCTAATCTGCGCTGCG 61.819 60.000 19.17 19.17 0.00 5.18
1198 1258 1.424493 GCTCTAATCTGCGCTGCGTT 61.424 55.000 24.04 12.12 0.00 4.84
1218 1278 0.386352 TGAGGTTAACTGCGACGACG 60.386 55.000 5.42 2.12 42.93 5.12
1220 1280 0.662374 AGGTTAACTGCGACGACGTG 60.662 55.000 4.58 5.14 41.98 4.49
1228 1288 0.931702 TGCGACGACGTGTGATTTTT 59.068 45.000 4.58 0.00 41.98 1.94
1235 1297 3.155998 CGACGTGTGATTTTTGATCTGC 58.844 45.455 0.00 0.00 0.00 4.26
1366 1428 5.531634 TCATGGCAAGTTCTTTTTAGCTTG 58.468 37.500 0.00 0.00 40.68 4.01
1383 1445 2.676463 GCTTGCTCGAGACATTCTTCCT 60.676 50.000 18.75 0.00 0.00 3.36
1400 1462 1.226101 CTAAGCGTTGCATGCACCG 60.226 57.895 30.43 30.43 34.97 4.94
1431 1493 6.721318 TCTGCATTAATTACTTCCTTCTGGT 58.279 36.000 0.00 0.00 34.23 4.00
1493 1555 6.922957 TGGACAACTTTAATTTGCATCAGTTC 59.077 34.615 0.00 0.00 0.00 3.01
1496 1558 7.491682 ACAACTTTAATTTGCATCAGTTCAGT 58.508 30.769 0.00 0.00 0.00 3.41
1499 1933 8.579682 ACTTTAATTTGCATCAGTTCAGTTTC 57.420 30.769 0.00 0.00 0.00 2.78
1502 1936 8.801715 TTAATTTGCATCAGTTCAGTTTCTTC 57.198 30.769 0.00 0.00 0.00 2.87
1503 1937 4.836125 TTGCATCAGTTCAGTTTCTTCC 57.164 40.909 0.00 0.00 0.00 3.46
1504 1938 3.149196 TGCATCAGTTCAGTTTCTTCCC 58.851 45.455 0.00 0.00 0.00 3.97
1505 1939 2.489722 GCATCAGTTCAGTTTCTTCCCC 59.510 50.000 0.00 0.00 0.00 4.81
1506 1940 2.951229 TCAGTTCAGTTTCTTCCCCC 57.049 50.000 0.00 0.00 0.00 5.40
1507 1941 2.418669 TCAGTTCAGTTTCTTCCCCCT 58.581 47.619 0.00 0.00 0.00 4.79
1508 1942 3.593942 TCAGTTCAGTTTCTTCCCCCTA 58.406 45.455 0.00 0.00 0.00 3.53
1509 1943 3.977999 TCAGTTCAGTTTCTTCCCCCTAA 59.022 43.478 0.00 0.00 0.00 2.69
1510 1944 4.414182 TCAGTTCAGTTTCTTCCCCCTAAA 59.586 41.667 0.00 0.00 0.00 1.85
1511 1945 5.103855 TCAGTTCAGTTTCTTCCCCCTAAAA 60.104 40.000 0.00 0.00 0.00 1.52
1512 1946 5.596772 CAGTTCAGTTTCTTCCCCCTAAAAA 59.403 40.000 0.00 0.00 0.00 1.94
1586 2021 1.747745 CGGCCGTTAAAAGGGGAGG 60.748 63.158 19.50 0.00 34.59 4.30
1710 2152 6.982160 AAATAGATGCATGCCAAATTCCTA 57.018 33.333 16.68 6.27 0.00 2.94
1711 2153 6.982160 AATAGATGCATGCCAAATTCCTAA 57.018 33.333 16.68 0.00 0.00 2.69
1716 2158 3.577848 TGCATGCCAAATTCCTAAACTGT 59.422 39.130 16.68 0.00 0.00 3.55
1757 2209 7.978982 AGAAGTAATTCTGTTACATGCATCAC 58.021 34.615 4.31 0.00 0.00 3.06
1763 2215 5.004922 TCTGTTACATGCATCACGATGTA 57.995 39.130 8.73 4.64 40.80 2.29
1764 2216 5.415221 TCTGTTACATGCATCACGATGTAA 58.585 37.500 8.73 0.00 40.89 2.41
1881 2342 7.475015 TGCAGCATTAATCAGTTAATCACTTC 58.525 34.615 0.00 0.00 38.21 3.01
1920 2389 6.994794 GCAAAGGCAAAAGTAACGTAACACG 61.995 44.000 0.00 0.00 43.48 4.49
1972 2441 0.250513 GGAAGAACTCGTGGCAGGAT 59.749 55.000 10.69 0.00 0.00 3.24
2221 2690 2.256174 CACAAGGTACGTATGTCACCG 58.744 52.381 0.00 0.00 37.42 4.94
2246 2715 2.292916 GCGTTGGCTTGCACGAAAC 61.293 57.895 9.17 0.00 38.76 2.78
2280 2749 2.407090 GGCTCATTTCAGTTTTGGTGC 58.593 47.619 0.00 0.00 0.00 5.01
2288 2760 1.671845 TCAGTTTTGGTGCGTGTAACC 59.328 47.619 0.00 0.00 38.26 2.85
2417 2889 2.847234 TTCACGGTGGAGCAGGGT 60.847 61.111 8.50 0.00 0.00 4.34
2495 2967 1.597027 CCAGGACCACAACGTGACC 60.597 63.158 0.00 0.00 35.23 4.02
2738 3210 1.129326 AGAGCGACGTTGACTTTTCG 58.871 50.000 7.08 0.00 34.56 3.46
2797 3281 1.204704 TCTCGACCGTCCGTTCTAGTA 59.795 52.381 0.00 0.00 0.00 1.82
2798 3282 2.002586 CTCGACCGTCCGTTCTAGTAA 58.997 52.381 0.00 0.00 0.00 2.24
2799 3283 1.732259 TCGACCGTCCGTTCTAGTAAC 59.268 52.381 0.00 0.00 0.00 2.50
3265 3749 0.248012 TCGGGTACGTGCACATCAAT 59.752 50.000 18.64 0.00 41.85 2.57
3271 3755 3.373748 GGTACGTGCACATCAATTCATCA 59.626 43.478 18.64 0.00 0.00 3.07
3275 3759 4.033019 CGTGCACATCAATTCATCATGAC 58.967 43.478 18.64 0.00 0.00 3.06
3276 3760 4.437659 CGTGCACATCAATTCATCATGACA 60.438 41.667 18.64 0.00 0.00 3.58
3323 3808 3.464907 CTCCATGATCATTCTGCTCGTT 58.535 45.455 5.16 0.00 0.00 3.85
3380 3865 2.092699 GGAGAGCAGGAAAGGCTACAAT 60.093 50.000 0.00 0.00 42.78 2.71
3450 3935 6.258230 TCTTTTCATTCATGCTTAGTGGTG 57.742 37.500 0.00 0.00 0.00 4.17
3458 3943 5.172687 TCATGCTTAGTGGTGGTATCAAA 57.827 39.130 0.00 0.00 0.00 2.69
3486 3971 8.458573 ACTGTCAATGTGTTTTTATTCACCTA 57.541 30.769 0.00 0.00 34.14 3.08
3489 3974 9.906660 TGTCAATGTGTTTTTATTCACCTATTC 57.093 29.630 0.00 0.00 34.14 1.75
3516 4001 0.725117 GGTTTGCGAAGGTGTATCCG 59.275 55.000 0.00 0.00 41.99 4.18
3728 4213 2.741228 GCCTGCCATTCTCTCAGTAGTG 60.741 54.545 0.00 0.00 0.00 2.74
3729 4214 2.762887 CCTGCCATTCTCTCAGTAGTGA 59.237 50.000 0.00 0.00 0.00 3.41
3841 4326 3.137728 AGTTTGGCTGGTTACTGGTTAGT 59.862 43.478 0.00 0.00 40.99 2.24
3842 4327 3.868619 TTGGCTGGTTACTGGTTAGTT 57.131 42.857 0.00 0.00 38.36 2.24
3886 4379 4.591321 ACTCATGGAATTTCAGGCCTAA 57.409 40.909 3.98 0.00 0.00 2.69
3946 4442 8.964533 TCTCTTATCTAGGCTATTTCTGGATT 57.035 34.615 0.00 0.00 34.86 3.01
3947 4443 9.386122 TCTCTTATCTAGGCTATTTCTGGATTT 57.614 33.333 0.00 0.00 34.86 2.17
3949 4445 9.784531 TCTTATCTAGGCTATTTCTGGATTTTG 57.215 33.333 0.00 0.00 34.86 2.44
3950 4446 8.924511 TTATCTAGGCTATTTCTGGATTTTGG 57.075 34.615 0.00 0.00 34.86 3.28
3951 4447 5.133221 TCTAGGCTATTTCTGGATTTTGGC 58.867 41.667 0.00 0.00 0.00 4.52
3952 4448 3.711863 AGGCTATTTCTGGATTTTGGCA 58.288 40.909 0.00 0.00 0.00 4.92
3953 4449 4.292643 AGGCTATTTCTGGATTTTGGCAT 58.707 39.130 0.00 0.00 0.00 4.40
3954 4450 4.100498 AGGCTATTTCTGGATTTTGGCATG 59.900 41.667 0.00 0.00 0.00 4.06
3955 4451 4.374399 GCTATTTCTGGATTTTGGCATGG 58.626 43.478 0.00 0.00 0.00 3.66
3956 4452 4.099881 GCTATTTCTGGATTTTGGCATGGA 59.900 41.667 0.00 0.00 0.00 3.41
3957 4453 5.221581 GCTATTTCTGGATTTTGGCATGGAT 60.222 40.000 0.00 0.00 0.00 3.41
3958 4454 4.741321 TTTCTGGATTTTGGCATGGATC 57.259 40.909 0.00 0.00 0.00 3.36
3959 4455 3.385314 TCTGGATTTTGGCATGGATCA 57.615 42.857 0.00 0.00 0.00 2.92
3960 4456 3.025978 TCTGGATTTTGGCATGGATCAC 58.974 45.455 0.00 0.00 0.00 3.06
3961 4457 3.028850 CTGGATTTTGGCATGGATCACT 58.971 45.455 0.00 0.00 0.00 3.41
3962 4458 3.443052 TGGATTTTGGCATGGATCACTT 58.557 40.909 0.00 0.00 0.00 3.16
3963 4459 3.448301 TGGATTTTGGCATGGATCACTTC 59.552 43.478 0.00 0.00 0.00 3.01
3964 4460 3.489738 GGATTTTGGCATGGATCACTTCG 60.490 47.826 0.00 0.00 0.00 3.79
3965 4461 2.488204 TTTGGCATGGATCACTTCGA 57.512 45.000 0.00 0.00 0.00 3.71
3966 4462 2.715749 TTGGCATGGATCACTTCGAT 57.284 45.000 0.00 0.00 36.91 3.59
3967 4463 1.957668 TGGCATGGATCACTTCGATG 58.042 50.000 0.00 0.00 41.91 3.84
3968 4464 1.233019 GGCATGGATCACTTCGATGG 58.767 55.000 3.12 0.00 40.02 3.51
3969 4465 1.202687 GGCATGGATCACTTCGATGGA 60.203 52.381 3.12 0.00 40.02 3.41
3970 4466 2.564771 GCATGGATCACTTCGATGGAA 58.435 47.619 3.12 0.00 40.02 3.53
3971 4467 3.144506 GCATGGATCACTTCGATGGAAT 58.855 45.455 3.12 0.00 40.02 3.01
3972 4468 3.188048 GCATGGATCACTTCGATGGAATC 59.812 47.826 3.12 5.23 40.02 2.52
3973 4469 4.639334 CATGGATCACTTCGATGGAATCT 58.361 43.478 3.12 0.00 42.58 2.40
3974 4470 4.760530 TGGATCACTTCGATGGAATCTT 57.239 40.909 3.12 0.00 42.58 2.40
3975 4471 4.445453 TGGATCACTTCGATGGAATCTTG 58.555 43.478 3.12 0.00 42.58 3.02
3976 4472 4.080919 TGGATCACTTCGATGGAATCTTGT 60.081 41.667 3.12 0.00 42.58 3.16
3977 4473 4.878397 GGATCACTTCGATGGAATCTTGTT 59.122 41.667 3.12 0.00 42.58 2.83
3978 4474 5.355350 GGATCACTTCGATGGAATCTTGTTT 59.645 40.000 3.12 0.00 42.58 2.83
3979 4475 6.127897 GGATCACTTCGATGGAATCTTGTTTT 60.128 38.462 3.12 0.00 42.58 2.43
3980 4476 6.241207 TCACTTCGATGGAATCTTGTTTTC 57.759 37.500 3.12 0.00 42.58 2.29
3981 4477 5.762711 TCACTTCGATGGAATCTTGTTTTCA 59.237 36.000 3.12 0.00 42.58 2.69
3982 4478 6.430925 TCACTTCGATGGAATCTTGTTTTCAT 59.569 34.615 3.12 0.00 42.58 2.57
3983 4479 7.606073 TCACTTCGATGGAATCTTGTTTTCATA 59.394 33.333 3.12 0.00 42.58 2.15
3984 4480 8.236586 CACTTCGATGGAATCTTGTTTTCATAA 58.763 33.333 3.12 0.00 42.58 1.90
3985 4481 8.792633 ACTTCGATGGAATCTTGTTTTCATAAA 58.207 29.630 3.12 0.00 42.58 1.40
3986 4482 9.624697 CTTCGATGGAATCTTGTTTTCATAAAA 57.375 29.630 0.00 0.00 42.58 1.52
3987 4483 9.973450 TTCGATGGAATCTTGTTTTCATAAAAA 57.027 25.926 0.00 0.00 42.58 1.94
3988 4484 9.405587 TCGATGGAATCTTGTTTTCATAAAAAC 57.594 29.630 0.00 0.00 46.03 2.43
4053 4549 3.991605 TTTTAAACGATCGCAGCTCTC 57.008 42.857 16.60 0.00 0.00 3.20
4054 4550 2.941453 TTAAACGATCGCAGCTCTCT 57.059 45.000 16.60 0.00 0.00 3.10
4055 4551 2.194800 TAAACGATCGCAGCTCTCTG 57.805 50.000 16.60 0.00 43.16 3.35
4056 4552 0.528017 AAACGATCGCAGCTCTCTGA 59.472 50.000 16.60 0.00 42.95 3.27
4057 4553 0.528017 AACGATCGCAGCTCTCTGAA 59.472 50.000 16.60 0.00 42.95 3.02
4058 4554 0.179150 ACGATCGCAGCTCTCTGAAC 60.179 55.000 16.60 0.00 42.95 3.18
4059 4555 0.179153 CGATCGCAGCTCTCTGAACA 60.179 55.000 0.26 0.00 42.95 3.18
4060 4556 1.276415 GATCGCAGCTCTCTGAACAC 58.724 55.000 0.00 0.00 42.95 3.32
4061 4557 0.605083 ATCGCAGCTCTCTGAACACA 59.395 50.000 0.00 0.00 42.95 3.72
4062 4558 0.319040 TCGCAGCTCTCTGAACACAC 60.319 55.000 0.00 0.00 42.95 3.82
4063 4559 1.612469 CGCAGCTCTCTGAACACACG 61.612 60.000 0.00 0.00 42.95 4.49
4064 4560 1.895280 GCAGCTCTCTGAACACACGC 61.895 60.000 0.00 0.00 42.95 5.34
4065 4561 0.598419 CAGCTCTCTGAACACACGCA 60.598 55.000 0.00 0.00 42.95 5.24
4066 4562 0.598680 AGCTCTCTGAACACACGCAC 60.599 55.000 0.00 0.00 0.00 5.34
4067 4563 0.875908 GCTCTCTGAACACACGCACA 60.876 55.000 0.00 0.00 0.00 4.57
4068 4564 0.855349 CTCTCTGAACACACGCACAC 59.145 55.000 0.00 0.00 0.00 3.82
4069 4565 0.529773 TCTCTGAACACACGCACACC 60.530 55.000 0.00 0.00 0.00 4.16
4070 4566 1.498865 CTCTGAACACACGCACACCC 61.499 60.000 0.00 0.00 0.00 4.61
4071 4567 2.515057 TGAACACACGCACACCCC 60.515 61.111 0.00 0.00 0.00 4.95
4072 4568 2.203153 GAACACACGCACACCCCT 60.203 61.111 0.00 0.00 0.00 4.79
4073 4569 1.822186 GAACACACGCACACCCCTT 60.822 57.895 0.00 0.00 0.00 3.95
4074 4570 0.533308 GAACACACGCACACCCCTTA 60.533 55.000 0.00 0.00 0.00 2.69
4075 4571 0.109723 AACACACGCACACCCCTTAT 59.890 50.000 0.00 0.00 0.00 1.73
4076 4572 0.321298 ACACACGCACACCCCTTATC 60.321 55.000 0.00 0.00 0.00 1.75
4077 4573 1.024579 CACACGCACACCCCTTATCC 61.025 60.000 0.00 0.00 0.00 2.59
4078 4574 1.451387 CACGCACACCCCTTATCCC 60.451 63.158 0.00 0.00 0.00 3.85
4079 4575 1.921346 ACGCACACCCCTTATCCCA 60.921 57.895 0.00 0.00 0.00 4.37
4080 4576 1.451387 CGCACACCCCTTATCCCAC 60.451 63.158 0.00 0.00 0.00 4.61
4081 4577 1.688811 GCACACCCCTTATCCCACA 59.311 57.895 0.00 0.00 0.00 4.17
4082 4578 0.679960 GCACACCCCTTATCCCACAC 60.680 60.000 0.00 0.00 0.00 3.82
4083 4579 0.695924 CACACCCCTTATCCCACACA 59.304 55.000 0.00 0.00 0.00 3.72
4084 4580 1.074727 CACACCCCTTATCCCACACAA 59.925 52.381 0.00 0.00 0.00 3.33
4085 4581 1.354368 ACACCCCTTATCCCACACAAG 59.646 52.381 0.00 0.00 0.00 3.16
4086 4582 0.331616 ACCCCTTATCCCACACAAGC 59.668 55.000 0.00 0.00 0.00 4.01
4087 4583 0.395724 CCCCTTATCCCACACAAGCC 60.396 60.000 0.00 0.00 0.00 4.35
4088 4584 0.748005 CCCTTATCCCACACAAGCCG 60.748 60.000 0.00 0.00 0.00 5.52
4089 4585 1.376609 CCTTATCCCACACAAGCCGC 61.377 60.000 0.00 0.00 0.00 6.53
4090 4586 0.392998 CTTATCCCACACAAGCCGCT 60.393 55.000 0.00 0.00 0.00 5.52
4091 4587 0.037590 TTATCCCACACAAGCCGCTT 59.962 50.000 0.00 0.00 0.00 4.68
4092 4588 0.906066 TATCCCACACAAGCCGCTTA 59.094 50.000 5.03 0.00 0.00 3.09
4093 4589 0.037590 ATCCCACACAAGCCGCTTAA 59.962 50.000 5.03 0.00 0.00 1.85
4094 4590 0.179015 TCCCACACAAGCCGCTTAAA 60.179 50.000 5.03 0.00 0.00 1.52
4095 4591 0.039527 CCCACACAAGCCGCTTAAAC 60.040 55.000 5.03 0.00 0.00 2.01
4096 4592 0.951558 CCACACAAGCCGCTTAAACT 59.048 50.000 5.03 0.00 0.00 2.66
4097 4593 2.147958 CCACACAAGCCGCTTAAACTA 58.852 47.619 5.03 0.00 0.00 2.24
4098 4594 2.550606 CCACACAAGCCGCTTAAACTAA 59.449 45.455 5.03 0.00 0.00 2.24
4099 4595 3.364964 CCACACAAGCCGCTTAAACTAAG 60.365 47.826 5.03 0.00 38.80 2.18
4100 4596 3.250040 CACACAAGCCGCTTAAACTAAGT 59.750 43.478 5.03 0.00 38.07 2.24
4101 4597 3.250040 ACACAAGCCGCTTAAACTAAGTG 59.750 43.478 5.03 10.20 43.92 3.16
4102 4598 3.250040 CACAAGCCGCTTAAACTAAGTGT 59.750 43.478 5.03 0.00 43.04 3.55
4103 4599 3.250040 ACAAGCCGCTTAAACTAAGTGTG 59.750 43.478 5.03 0.00 43.04 3.82
4104 4600 3.121738 AGCCGCTTAAACTAAGTGTGT 57.878 42.857 6.31 0.00 43.04 3.72
4105 4601 2.806244 AGCCGCTTAAACTAAGTGTGTG 59.194 45.455 6.31 0.00 43.04 3.82
4106 4602 2.664698 GCCGCTTAAACTAAGTGTGTGC 60.665 50.000 6.31 0.47 43.04 4.57
4107 4603 2.806244 CCGCTTAAACTAAGTGTGTGCT 59.194 45.455 6.31 0.00 43.04 4.40
4108 4604 3.991773 CCGCTTAAACTAAGTGTGTGCTA 59.008 43.478 6.31 0.00 43.04 3.49
4109 4605 4.449743 CCGCTTAAACTAAGTGTGTGCTAA 59.550 41.667 6.31 0.00 43.04 3.09
4110 4606 5.121768 CCGCTTAAACTAAGTGTGTGCTAAT 59.878 40.000 6.31 0.00 43.04 1.73
4111 4607 6.311935 CCGCTTAAACTAAGTGTGTGCTAATA 59.688 38.462 6.31 0.00 43.04 0.98
4112 4608 7.391786 CGCTTAAACTAAGTGTGTGCTAATAG 58.608 38.462 0.00 0.00 40.47 1.73
4113 4609 7.063074 CGCTTAAACTAAGTGTGTGCTAATAGT 59.937 37.037 0.00 0.00 40.47 2.12
4114 4610 9.362539 GCTTAAACTAAGTGTGTGCTAATAGTA 57.637 33.333 0.00 0.00 38.07 1.82
4119 4615 8.718102 ACTAAGTGTGTGCTAATAGTAAATGG 57.282 34.615 0.00 0.00 0.00 3.16
4120 4616 8.537016 ACTAAGTGTGTGCTAATAGTAAATGGA 58.463 33.333 0.00 0.00 0.00 3.41
4121 4617 9.547753 CTAAGTGTGTGCTAATAGTAAATGGAT 57.452 33.333 0.00 0.00 0.00 3.41
4122 4618 8.807948 AAGTGTGTGCTAATAGTAAATGGATT 57.192 30.769 0.00 0.00 0.00 3.01
4123 4619 9.899661 AAGTGTGTGCTAATAGTAAATGGATTA 57.100 29.630 0.00 0.00 0.00 1.75
4140 4636 5.392995 TGGATTATACATGGTCCATTTGGG 58.607 41.667 0.00 0.00 35.91 4.12
4141 4637 4.220602 GGATTATACATGGTCCATTTGGGC 59.779 45.833 0.00 0.00 39.63 5.36
4142 4638 1.691196 ATACATGGTCCATTTGGGCG 58.309 50.000 0.00 0.00 41.79 6.13
4143 4639 0.621082 TACATGGTCCATTTGGGCGA 59.379 50.000 0.00 0.00 41.79 5.54
4144 4640 0.033208 ACATGGTCCATTTGGGCGAT 60.033 50.000 0.00 0.00 41.79 4.58
4145 4641 1.214175 ACATGGTCCATTTGGGCGATA 59.786 47.619 0.00 0.00 41.79 2.92
4146 4642 1.608590 CATGGTCCATTTGGGCGATAC 59.391 52.381 0.00 0.00 41.79 2.24
4147 4643 0.621082 TGGTCCATTTGGGCGATACA 59.379 50.000 0.00 0.00 41.79 2.29
4148 4644 1.214175 TGGTCCATTTGGGCGATACAT 59.786 47.619 0.00 0.00 41.79 2.29
4149 4645 1.880027 GGTCCATTTGGGCGATACATC 59.120 52.381 0.00 0.00 41.79 3.06
4150 4646 2.487265 GGTCCATTTGGGCGATACATCT 60.487 50.000 0.00 0.00 41.79 2.90
4151 4647 2.549754 GTCCATTTGGGCGATACATCTG 59.450 50.000 0.00 0.00 36.21 2.90
4152 4648 1.267806 CCATTTGGGCGATACATCTGC 59.732 52.381 0.00 0.00 0.00 4.26
4153 4649 1.948834 CATTTGGGCGATACATCTGCA 59.051 47.619 0.00 0.00 0.00 4.41
4154 4650 2.121291 TTTGGGCGATACATCTGCAA 57.879 45.000 0.00 0.00 0.00 4.08
4155 4651 2.346766 TTGGGCGATACATCTGCAAT 57.653 45.000 0.00 0.00 0.00 3.56
4156 4652 2.346766 TGGGCGATACATCTGCAATT 57.653 45.000 0.00 0.00 0.00 2.32
4157 4653 2.653726 TGGGCGATACATCTGCAATTT 58.346 42.857 0.00 0.00 0.00 1.82
4158 4654 3.814625 TGGGCGATACATCTGCAATTTA 58.185 40.909 0.00 0.00 0.00 1.40
4159 4655 4.397420 TGGGCGATACATCTGCAATTTAT 58.603 39.130 0.00 0.00 0.00 1.40
4160 4656 5.555966 TGGGCGATACATCTGCAATTTATA 58.444 37.500 0.00 0.00 0.00 0.98
4161 4657 5.643348 TGGGCGATACATCTGCAATTTATAG 59.357 40.000 0.00 0.00 0.00 1.31
4162 4658 5.447818 GGGCGATACATCTGCAATTTATAGC 60.448 44.000 0.00 0.58 0.00 2.97
4163 4659 5.122239 GGCGATACATCTGCAATTTATAGCA 59.878 40.000 15.04 0.00 39.25 3.49
4164 4660 6.017933 GCGATACATCTGCAATTTATAGCAC 58.982 40.000 11.44 0.00 36.62 4.40
4165 4661 6.347644 GCGATACATCTGCAATTTATAGCACA 60.348 38.462 11.44 0.00 36.62 4.57
4166 4662 7.011773 CGATACATCTGCAATTTATAGCACAC 58.988 38.462 0.00 0.00 36.62 3.82
4167 4663 5.160699 ACATCTGCAATTTATAGCACACG 57.839 39.130 0.00 0.00 36.62 4.49
4168 4664 4.035558 ACATCTGCAATTTATAGCACACGG 59.964 41.667 0.00 0.00 36.62 4.94
4169 4665 3.605634 TCTGCAATTTATAGCACACGGT 58.394 40.909 0.00 0.00 36.62 4.83
4170 4666 4.006989 TCTGCAATTTATAGCACACGGTT 58.993 39.130 0.00 0.00 36.62 4.44
4171 4667 4.094294 TCTGCAATTTATAGCACACGGTTC 59.906 41.667 0.00 0.00 36.62 3.62
4172 4668 3.753797 TGCAATTTATAGCACACGGTTCA 59.246 39.130 0.00 0.00 35.51 3.18
4173 4669 4.095610 GCAATTTATAGCACACGGTTCAC 58.904 43.478 0.00 0.00 0.00 3.18
4174 4670 4.142687 GCAATTTATAGCACACGGTTCACT 60.143 41.667 0.00 0.00 0.00 3.41
4175 4671 5.560148 CAATTTATAGCACACGGTTCACTC 58.440 41.667 0.00 0.00 0.00 3.51
4176 4672 2.554806 TATAGCACACGGTTCACTCG 57.445 50.000 0.00 0.00 0.00 4.18
4177 4673 0.885879 ATAGCACACGGTTCACTCGA 59.114 50.000 0.00 0.00 0.00 4.04
4178 4674 0.669619 TAGCACACGGTTCACTCGAA 59.330 50.000 0.00 0.00 0.00 3.71
4179 4675 0.179094 AGCACACGGTTCACTCGAAA 60.179 50.000 0.00 0.00 31.43 3.46
4180 4676 0.653636 GCACACGGTTCACTCGAAAA 59.346 50.000 0.00 0.00 31.43 2.29
4181 4677 1.062880 GCACACGGTTCACTCGAAAAA 59.937 47.619 0.00 0.00 31.43 1.94
4182 4678 2.849502 GCACACGGTTCACTCGAAAAAG 60.850 50.000 0.00 0.00 31.43 2.27
4183 4679 1.937899 ACACGGTTCACTCGAAAAAGG 59.062 47.619 0.00 0.00 31.43 3.11
4184 4680 1.937899 CACGGTTCACTCGAAAAAGGT 59.062 47.619 0.00 0.00 31.43 3.50
4185 4681 1.937899 ACGGTTCACTCGAAAAAGGTG 59.062 47.619 0.00 0.00 31.43 4.00
4186 4682 1.937899 CGGTTCACTCGAAAAAGGTGT 59.062 47.619 2.18 0.00 31.43 4.16
4187 4683 2.286184 CGGTTCACTCGAAAAAGGTGTG 60.286 50.000 2.18 0.00 31.43 3.82
4188 4684 2.681344 GGTTCACTCGAAAAAGGTGTGT 59.319 45.455 2.18 0.00 31.43 3.72
4189 4685 3.486875 GGTTCACTCGAAAAAGGTGTGTG 60.487 47.826 2.18 0.00 31.43 3.82
4190 4686 2.980568 TCACTCGAAAAAGGTGTGTGT 58.019 42.857 2.18 0.00 33.30 3.72
4191 4687 2.675844 TCACTCGAAAAAGGTGTGTGTG 59.324 45.455 2.18 0.00 33.30 3.82
4192 4688 2.418628 CACTCGAAAAAGGTGTGTGTGT 59.581 45.455 0.00 0.00 0.00 3.72
4193 4689 2.418628 ACTCGAAAAAGGTGTGTGTGTG 59.581 45.455 0.00 0.00 0.00 3.82
4194 4690 2.418628 CTCGAAAAAGGTGTGTGTGTGT 59.581 45.455 0.00 0.00 0.00 3.72
4195 4691 2.160615 TCGAAAAAGGTGTGTGTGTGTG 59.839 45.455 0.00 0.00 0.00 3.82
4196 4692 2.160615 CGAAAAAGGTGTGTGTGTGTGA 59.839 45.455 0.00 0.00 0.00 3.58
4197 4693 3.181501 CGAAAAAGGTGTGTGTGTGTGAT 60.182 43.478 0.00 0.00 0.00 3.06
4198 4694 3.781079 AAAAGGTGTGTGTGTGTGATG 57.219 42.857 0.00 0.00 0.00 3.07
4199 4695 2.708216 AAGGTGTGTGTGTGTGATGA 57.292 45.000 0.00 0.00 0.00 2.92
4200 4696 2.936919 AGGTGTGTGTGTGTGATGAT 57.063 45.000 0.00 0.00 0.00 2.45
4201 4697 3.213206 AGGTGTGTGTGTGTGATGATT 57.787 42.857 0.00 0.00 0.00 2.57
4202 4698 3.554934 AGGTGTGTGTGTGTGATGATTT 58.445 40.909 0.00 0.00 0.00 2.17
4203 4699 3.565482 AGGTGTGTGTGTGTGATGATTTC 59.435 43.478 0.00 0.00 0.00 2.17
4204 4700 3.314913 GGTGTGTGTGTGTGATGATTTCA 59.685 43.478 0.00 0.00 0.00 2.69
4213 4709 3.455619 GTGATGATTTCACGTTCGCTT 57.544 42.857 0.00 0.00 45.00 4.68
4214 4710 4.577687 GTGATGATTTCACGTTCGCTTA 57.422 40.909 0.00 0.00 45.00 3.09
4215 4711 4.323751 GTGATGATTTCACGTTCGCTTAC 58.676 43.478 0.00 0.00 45.00 2.34
4216 4712 3.060230 TGATGATTTCACGTTCGCTTACG 59.940 43.478 6.00 6.00 46.52 3.18
4223 4719 3.830801 CGTTCGCTTACGTCACATG 57.169 52.632 0.00 0.00 41.18 3.21
4224 4720 0.365523 CGTTCGCTTACGTCACATGG 59.634 55.000 0.00 0.00 41.18 3.66
4225 4721 1.425412 GTTCGCTTACGTCACATGGT 58.575 50.000 0.00 0.00 41.18 3.55
4226 4722 1.796459 GTTCGCTTACGTCACATGGTT 59.204 47.619 0.00 0.00 41.18 3.67
4227 4723 1.705256 TCGCTTACGTCACATGGTTC 58.295 50.000 0.00 0.00 41.18 3.62
4228 4724 1.271379 TCGCTTACGTCACATGGTTCT 59.729 47.619 0.00 0.00 41.18 3.01
4327 4824 0.739813 GTAACCCACTCGCGAGCAAT 60.740 55.000 34.83 18.86 0.00 3.56
4336 4833 3.422303 GCGAGCAATCACGTGGCA 61.422 61.111 17.00 0.00 0.00 4.92
4365 4862 4.748701 ACCCAAGTTGACTAGTCCTTCTA 58.251 43.478 20.11 0.00 0.00 2.10
4688 5240 0.827089 CACCCCCTCATGTTGCAACA 60.827 55.000 32.78 32.78 44.06 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.252057 TGAATGTCTCACCGGGGAGA 60.252 55.000 32.83 32.83 41.47 3.71
34 35 0.176680 CTGAATGTCTCACCGGGGAG 59.823 60.000 28.77 28.77 36.21 4.30
35 36 0.252057 TCTGAATGTCTCACCGGGGA 60.252 55.000 6.08 6.08 0.00 4.81
43 44 1.153349 GCCGGGGTCTGAATGTCTC 60.153 63.158 2.18 0.00 0.00 3.36
46 47 4.096003 CGGCCGGGGTCTGAATGT 62.096 66.667 20.10 0.00 0.00 2.71
77 78 2.227865 CGTCCATTGGTTCGATTTGGTT 59.772 45.455 14.32 0.00 0.00 3.67
197 198 1.379176 CTCCTCCTGCTCCTCACGA 60.379 63.158 0.00 0.00 0.00 4.35
207 208 4.787280 ACCGCCTCCCTCCTCCTG 62.787 72.222 0.00 0.00 0.00 3.86
257 258 2.123033 GGCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
258 259 2.520741 CGGCTCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
259 260 4.150454 CCGGCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
319 320 4.058817 CCGGGATAAAAAGAATCGAGAGG 58.941 47.826 0.00 0.00 0.00 3.69
358 359 0.848053 AGTCCGACCCCCAAAGAAAA 59.152 50.000 0.00 0.00 0.00 2.29
362 363 1.296715 CAGAGTCCGACCCCCAAAG 59.703 63.158 0.00 0.00 0.00 2.77
367 368 3.003763 AAGCCAGAGTCCGACCCC 61.004 66.667 0.00 0.00 0.00 4.95
392 422 1.702401 TGGGGTGTGTGTATGTGACAT 59.298 47.619 2.65 2.65 41.14 3.06
429 459 0.101219 GGATTTTCGGCACATCTGGC 59.899 55.000 0.00 0.00 39.65 4.85
877 914 1.574702 GGGCATTTATAGACGGCGGC 61.575 60.000 13.24 8.92 0.00 6.53
900 937 1.146982 GAGTAGAGATGGAGGAGGCCT 59.853 57.143 3.86 3.86 36.03 5.19
906 943 1.519751 CGCGGGAGTAGAGATGGAGG 61.520 65.000 0.00 0.00 0.00 4.30
909 946 1.519751 CTCCGCGGGAGTAGAGATGG 61.520 65.000 27.83 0.00 44.25 3.51
938 976 2.873609 CGCGGAGAAGAGATATGGATG 58.126 52.381 0.00 0.00 0.00 3.51
943 981 1.203523 GATGGCGCGGAGAAGAGATAT 59.796 52.381 8.83 0.00 0.00 1.63
944 982 0.598562 GATGGCGCGGAGAAGAGATA 59.401 55.000 8.83 0.00 0.00 1.98
1143 1195 6.876257 AGCTAGGCTCAAAACTATGTATATGC 59.124 38.462 0.00 0.00 30.62 3.14
1150 1202 4.954875 AGCTAGCTAGGCTCAAAACTATG 58.045 43.478 17.69 0.00 40.44 2.23
1180 1232 1.002366 AAACGCAGCGCAGATTAGAG 58.998 50.000 16.61 0.00 0.00 2.43
1181 1233 0.721154 CAAACGCAGCGCAGATTAGA 59.279 50.000 16.61 0.00 0.00 2.10
1182 1234 0.721154 TCAAACGCAGCGCAGATTAG 59.279 50.000 16.61 0.00 0.00 1.73
1196 1256 2.097056 GTCGTCGCAGTTAACCTCAAAC 60.097 50.000 0.88 0.00 0.00 2.93
1198 1258 1.774639 GTCGTCGCAGTTAACCTCAA 58.225 50.000 0.88 0.00 0.00 3.02
1218 1278 3.256631 ACCCTGCAGATCAAAAATCACAC 59.743 43.478 17.39 0.00 0.00 3.82
1220 1280 5.841957 ATACCCTGCAGATCAAAAATCAC 57.158 39.130 17.39 0.00 0.00 3.06
1228 1288 3.969312 TGATCAGAATACCCTGCAGATCA 59.031 43.478 17.39 10.25 34.28 2.92
1235 1297 2.838736 CCCGTTGATCAGAATACCCTG 58.161 52.381 0.00 0.00 35.55 4.45
1366 1428 3.120041 GCTTAGGAAGAATGTCTCGAGC 58.880 50.000 7.81 3.58 0.00 5.03
1400 1462 8.000780 AGGAAGTAATTAATGCAGATTGAACC 57.999 34.615 0.00 0.00 0.00 3.62
1431 1493 7.524065 GCTAGTAAGCTAAAACCGATCAAAAA 58.476 34.615 0.00 0.00 45.85 1.94
1520 1954 9.274065 CCGTAAACTAATGCAGATTAAAGAAAC 57.726 33.333 0.00 0.00 0.00 2.78
1521 1955 9.005777 ACCGTAAACTAATGCAGATTAAAGAAA 57.994 29.630 0.00 0.00 0.00 2.52
1522 1956 8.447833 CACCGTAAACTAATGCAGATTAAAGAA 58.552 33.333 0.00 0.00 0.00 2.52
1523 1957 7.604927 ACACCGTAAACTAATGCAGATTAAAGA 59.395 33.333 0.00 0.00 0.00 2.52
1524 1958 7.748847 ACACCGTAAACTAATGCAGATTAAAG 58.251 34.615 0.00 0.00 0.00 1.85
1525 1959 7.412129 CGACACCGTAAACTAATGCAGATTAAA 60.412 37.037 0.00 0.00 0.00 1.52
1526 1960 6.035220 CGACACCGTAAACTAATGCAGATTAA 59.965 38.462 0.00 0.00 0.00 1.40
1527 1961 5.517411 CGACACCGTAAACTAATGCAGATTA 59.483 40.000 0.00 0.00 0.00 1.75
1528 1962 4.328983 CGACACCGTAAACTAATGCAGATT 59.671 41.667 0.00 0.00 0.00 2.40
1544 1979 1.790755 TTTTGATCTGGACGACACCG 58.209 50.000 0.00 0.00 42.50 4.94
1571 2006 2.589720 ACAAACCTCCCCTTTTAACGG 58.410 47.619 0.00 0.00 0.00 4.44
1586 2021 3.001939 AGTGCTACTACACGCAAACAAAC 59.998 43.478 0.00 0.00 45.45 2.93
1674 2116 6.925610 TGCATCTATTTATGTTCAGTGACC 57.074 37.500 0.00 0.00 0.00 4.02
1686 2128 6.982160 AGGAATTTGGCATGCATCTATTTA 57.018 33.333 21.36 0.00 0.00 1.40
1710 2152 5.070770 TCTGTGTTTGCAATTGACAGTTT 57.929 34.783 22.48 0.00 36.30 2.66
1711 2153 4.398988 TCTCTGTGTTTGCAATTGACAGTT 59.601 37.500 22.48 0.00 36.30 3.16
1716 2158 6.691754 TTACTTCTCTGTGTTTGCAATTGA 57.308 33.333 10.34 0.00 0.00 2.57
1757 2209 6.764877 ATTAAGCACGAATAGGTTACATCG 57.235 37.500 0.00 0.00 40.90 3.84
1763 2215 6.882678 ACTACCAAATTAAGCACGAATAGGTT 59.117 34.615 0.00 0.00 31.22 3.50
1764 2216 6.412214 ACTACCAAATTAAGCACGAATAGGT 58.588 36.000 0.00 0.00 32.60 3.08
1821 2279 1.157585 CTCGCGAGATATCCGGAGAA 58.842 55.000 32.06 0.00 40.84 2.87
1823 2281 1.394227 GTACTCGCGAGATATCCGGAG 59.606 57.143 40.58 13.13 40.84 4.63
1881 2342 2.539547 CCTTTGCGCAAACGATGGATAG 60.540 50.000 30.63 17.37 43.93 2.08
1920 2389 3.458189 CCGTTCCTGTTCATGAGTATCC 58.542 50.000 0.00 0.00 0.00 2.59
1922 2391 3.104512 TCCCGTTCCTGTTCATGAGTAT 58.895 45.455 0.00 0.00 0.00 2.12
2211 2680 1.421410 CGCCTTGCTCGGTGACATAC 61.421 60.000 0.00 0.00 36.68 2.39
2221 2690 2.256461 CAAGCCAACGCCTTGCTC 59.744 61.111 0.00 0.00 34.57 4.26
2246 2715 1.875813 GAGCCGACAGATGAGTGCG 60.876 63.158 0.00 0.00 0.00 5.34
2280 2749 1.265568 CCAAGACGATCGGTTACACG 58.734 55.000 20.98 0.76 0.00 4.49
2288 2760 2.032030 ACAAGCAAAACCAAGACGATCG 60.032 45.455 14.88 14.88 0.00 3.69
2642 3114 2.358737 GCGGTGGAGTTGAGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
2738 3210 1.815840 GGAGCGAGCCTGGTTAAGC 60.816 63.158 0.00 0.00 0.00 3.09
2741 3213 0.975556 TGATGGAGCGAGCCTGGTTA 60.976 55.000 0.00 0.00 0.00 2.85
2776 3248 0.373024 CTAGAACGGACGGTCGAGAC 59.627 60.000 13.48 0.00 36.83 3.36
2797 3281 1.395608 CCAAACACGCCGATTATCGTT 59.604 47.619 13.73 0.00 38.40 3.85
2798 3282 1.003851 CCAAACACGCCGATTATCGT 58.996 50.000 13.73 0.00 38.40 3.73
2799 3283 0.303493 CCCAAACACGCCGATTATCG 59.697 55.000 7.74 7.74 40.07 2.92
2990 3474 4.389576 GTCGGCGTCCACGTACGT 62.390 66.667 16.72 16.72 44.64 3.57
3417 3902 8.543862 AGCATGAATGAAAAGAAAGAAAATCC 57.456 30.769 0.00 0.00 0.00 3.01
3450 3935 9.691362 AAAACACATTGACAGTATTTTGATACC 57.309 29.630 0.00 0.00 0.00 2.73
3458 3943 9.691362 GGTGAATAAAAACACATTGACAGTATT 57.309 29.630 0.00 0.00 38.57 1.89
3486 3971 3.490761 CCTTCGCAAACCAACAACAGAAT 60.491 43.478 0.00 0.00 0.00 2.40
3489 3974 1.134175 ACCTTCGCAAACCAACAACAG 59.866 47.619 0.00 0.00 0.00 3.16
3516 4001 3.140225 GATCGCCGTCCACCCTCTC 62.140 68.421 0.00 0.00 0.00 3.20
3784 4269 3.173668 TCGACTTGCACACCATATACC 57.826 47.619 0.00 0.00 0.00 2.73
3786 4271 4.180817 CAGTTCGACTTGCACACCATATA 58.819 43.478 0.00 0.00 0.00 0.86
3841 4326 6.388619 AAATTCCTAAGCCCAGACTAAGAA 57.611 37.500 0.00 0.00 0.00 2.52
3842 4327 6.672657 AGTAAATTCCTAAGCCCAGACTAAGA 59.327 38.462 0.00 0.00 0.00 2.10
3886 4379 2.835764 TCTTGTTTATACCGAGGCCACT 59.164 45.455 5.01 0.00 0.00 4.00
3931 4427 3.711863 TGCCAAAATCCAGAAATAGCCT 58.288 40.909 0.00 0.00 0.00 4.58
3944 4440 3.355378 TCGAAGTGATCCATGCCAAAAT 58.645 40.909 0.00 0.00 0.00 1.82
3945 4441 2.789213 TCGAAGTGATCCATGCCAAAA 58.211 42.857 0.00 0.00 0.00 2.44
3946 4442 2.488204 TCGAAGTGATCCATGCCAAA 57.512 45.000 0.00 0.00 0.00 3.28
3947 4443 2.291365 CATCGAAGTGATCCATGCCAA 58.709 47.619 0.00 0.00 34.13 4.52
3948 4444 1.475571 CCATCGAAGTGATCCATGCCA 60.476 52.381 0.00 0.00 34.13 4.92
3949 4445 1.202687 TCCATCGAAGTGATCCATGCC 60.203 52.381 0.00 0.00 34.13 4.40
3950 4446 2.245159 TCCATCGAAGTGATCCATGC 57.755 50.000 0.00 0.00 34.13 4.06
3951 4447 4.639334 AGATTCCATCGAAGTGATCCATG 58.361 43.478 0.00 0.00 34.13 3.66
3952 4448 4.970860 AGATTCCATCGAAGTGATCCAT 57.029 40.909 0.00 0.00 34.13 3.41
3953 4449 4.080919 ACAAGATTCCATCGAAGTGATCCA 60.081 41.667 0.00 0.00 34.13 3.41
3954 4450 4.446371 ACAAGATTCCATCGAAGTGATCC 58.554 43.478 0.00 0.00 34.13 3.36
3955 4451 6.428385 AAACAAGATTCCATCGAAGTGATC 57.572 37.500 0.00 0.00 34.13 2.92
3956 4452 6.430925 TGAAAACAAGATTCCATCGAAGTGAT 59.569 34.615 0.00 0.00 38.01 3.06
3957 4453 5.762711 TGAAAACAAGATTCCATCGAAGTGA 59.237 36.000 0.00 0.00 0.00 3.41
3958 4454 6.000891 TGAAAACAAGATTCCATCGAAGTG 57.999 37.500 0.00 0.00 0.00 3.16
3959 4455 6.824305 ATGAAAACAAGATTCCATCGAAGT 57.176 33.333 0.00 0.00 0.00 3.01
3960 4456 9.624697 TTTTATGAAAACAAGATTCCATCGAAG 57.375 29.630 0.00 0.00 0.00 3.79
3961 4457 9.973450 TTTTTATGAAAACAAGATTCCATCGAA 57.027 25.926 0.00 0.00 30.07 3.71
4032 4528 3.994392 AGAGAGCTGCGATCGTTTAAAAA 59.006 39.130 17.81 0.00 0.00 1.94
4033 4529 3.367932 CAGAGAGCTGCGATCGTTTAAAA 59.632 43.478 17.81 0.00 34.95 1.52
4034 4530 2.923655 CAGAGAGCTGCGATCGTTTAAA 59.076 45.455 17.81 0.00 34.95 1.52
4035 4531 2.163613 TCAGAGAGCTGCGATCGTTTAA 59.836 45.455 17.81 0.00 42.01 1.52
4036 4532 1.743394 TCAGAGAGCTGCGATCGTTTA 59.257 47.619 17.81 2.87 42.01 2.01
4037 4533 0.528017 TCAGAGAGCTGCGATCGTTT 59.472 50.000 17.81 0.00 42.01 3.60
4038 4534 0.528017 TTCAGAGAGCTGCGATCGTT 59.472 50.000 17.81 0.00 42.01 3.85
4039 4535 0.179150 GTTCAGAGAGCTGCGATCGT 60.179 55.000 17.81 0.00 42.01 3.73
4040 4536 0.179153 TGTTCAGAGAGCTGCGATCG 60.179 55.000 11.69 11.69 42.01 3.69
4041 4537 1.276415 GTGTTCAGAGAGCTGCGATC 58.724 55.000 0.00 0.00 42.01 3.69
4042 4538 0.605083 TGTGTTCAGAGAGCTGCGAT 59.395 50.000 0.00 0.00 42.01 4.58
4043 4539 0.319040 GTGTGTTCAGAGAGCTGCGA 60.319 55.000 0.00 0.00 42.01 5.10
4044 4540 1.612469 CGTGTGTTCAGAGAGCTGCG 61.612 60.000 0.00 0.00 42.01 5.18
4045 4541 1.895280 GCGTGTGTTCAGAGAGCTGC 61.895 60.000 0.00 0.00 42.01 5.25
4046 4542 0.598419 TGCGTGTGTTCAGAGAGCTG 60.598 55.000 0.00 0.00 43.67 4.24
4047 4543 0.598680 GTGCGTGTGTTCAGAGAGCT 60.599 55.000 0.00 0.00 0.00 4.09
4048 4544 0.875908 TGTGCGTGTGTTCAGAGAGC 60.876 55.000 0.00 0.00 0.00 4.09
4049 4545 0.855349 GTGTGCGTGTGTTCAGAGAG 59.145 55.000 0.00 0.00 0.00 3.20
4050 4546 0.529773 GGTGTGCGTGTGTTCAGAGA 60.530 55.000 0.00 0.00 0.00 3.10
4051 4547 1.498865 GGGTGTGCGTGTGTTCAGAG 61.499 60.000 0.00 0.00 0.00 3.35
4052 4548 1.522806 GGGTGTGCGTGTGTTCAGA 60.523 57.895 0.00 0.00 0.00 3.27
4053 4549 2.542907 GGGGTGTGCGTGTGTTCAG 61.543 63.158 0.00 0.00 0.00 3.02
4054 4550 2.515057 GGGGTGTGCGTGTGTTCA 60.515 61.111 0.00 0.00 0.00 3.18
4055 4551 0.533308 TAAGGGGTGTGCGTGTGTTC 60.533 55.000 0.00 0.00 0.00 3.18
4056 4552 0.109723 ATAAGGGGTGTGCGTGTGTT 59.890 50.000 0.00 0.00 0.00 3.32
4057 4553 0.321298 GATAAGGGGTGTGCGTGTGT 60.321 55.000 0.00 0.00 0.00 3.72
4058 4554 1.024579 GGATAAGGGGTGTGCGTGTG 61.025 60.000 0.00 0.00 0.00 3.82
4059 4555 1.298667 GGATAAGGGGTGTGCGTGT 59.701 57.895 0.00 0.00 0.00 4.49
4060 4556 1.451387 GGGATAAGGGGTGTGCGTG 60.451 63.158 0.00 0.00 0.00 5.34
4061 4557 1.921346 TGGGATAAGGGGTGTGCGT 60.921 57.895 0.00 0.00 0.00 5.24
4062 4558 1.451387 GTGGGATAAGGGGTGTGCG 60.451 63.158 0.00 0.00 0.00 5.34
4063 4559 0.679960 GTGTGGGATAAGGGGTGTGC 60.680 60.000 0.00 0.00 0.00 4.57
4064 4560 0.695924 TGTGTGGGATAAGGGGTGTG 59.304 55.000 0.00 0.00 0.00 3.82
4065 4561 1.354368 CTTGTGTGGGATAAGGGGTGT 59.646 52.381 0.00 0.00 0.00 4.16
4066 4562 1.955208 GCTTGTGTGGGATAAGGGGTG 60.955 57.143 0.00 0.00 0.00 4.61
4067 4563 0.331616 GCTTGTGTGGGATAAGGGGT 59.668 55.000 0.00 0.00 0.00 4.95
4068 4564 0.395724 GGCTTGTGTGGGATAAGGGG 60.396 60.000 0.00 0.00 0.00 4.79
4069 4565 0.748005 CGGCTTGTGTGGGATAAGGG 60.748 60.000 0.00 0.00 0.00 3.95
4070 4566 1.376609 GCGGCTTGTGTGGGATAAGG 61.377 60.000 0.00 0.00 0.00 2.69
4071 4567 0.392998 AGCGGCTTGTGTGGGATAAG 60.393 55.000 0.00 0.00 0.00 1.73
4072 4568 0.037590 AAGCGGCTTGTGTGGGATAA 59.962 50.000 15.59 0.00 0.00 1.75
4073 4569 0.906066 TAAGCGGCTTGTGTGGGATA 59.094 50.000 24.75 0.00 0.00 2.59
4074 4570 0.037590 TTAAGCGGCTTGTGTGGGAT 59.962 50.000 24.75 0.00 0.00 3.85
4075 4571 0.179015 TTTAAGCGGCTTGTGTGGGA 60.179 50.000 24.75 0.00 0.00 4.37
4076 4572 0.039527 GTTTAAGCGGCTTGTGTGGG 60.040 55.000 24.75 0.00 0.00 4.61
4077 4573 0.951558 AGTTTAAGCGGCTTGTGTGG 59.048 50.000 24.75 0.00 0.00 4.17
4078 4574 3.250040 ACTTAGTTTAAGCGGCTTGTGTG 59.750 43.478 24.75 10.47 39.39 3.82
4079 4575 3.250040 CACTTAGTTTAAGCGGCTTGTGT 59.750 43.478 24.75 9.31 39.39 3.72
4080 4576 3.250040 ACACTTAGTTTAAGCGGCTTGTG 59.750 43.478 24.75 21.58 39.39 3.33
4081 4577 3.250040 CACACTTAGTTTAAGCGGCTTGT 59.750 43.478 24.75 9.46 39.39 3.16
4082 4578 3.250040 ACACACTTAGTTTAAGCGGCTTG 59.750 43.478 24.75 8.81 39.39 4.01
4083 4579 3.250040 CACACACTTAGTTTAAGCGGCTT 59.750 43.478 20.32 20.32 39.39 4.35
4084 4580 2.806244 CACACACTTAGTTTAAGCGGCT 59.194 45.455 0.00 0.00 39.39 5.52
4085 4581 2.664698 GCACACACTTAGTTTAAGCGGC 60.665 50.000 0.00 0.00 39.39 6.53
4086 4582 2.806244 AGCACACACTTAGTTTAAGCGG 59.194 45.455 0.00 0.00 39.39 5.52
4087 4583 5.585500 TTAGCACACACTTAGTTTAAGCG 57.415 39.130 0.00 0.00 39.39 4.68
4088 4584 8.252964 ACTATTAGCACACACTTAGTTTAAGC 57.747 34.615 0.00 0.00 39.39 3.09
4093 4589 9.162764 CCATTTACTATTAGCACACACTTAGTT 57.837 33.333 0.00 0.00 0.00 2.24
4094 4590 8.537016 TCCATTTACTATTAGCACACACTTAGT 58.463 33.333 0.00 0.00 0.00 2.24
4095 4591 8.942338 TCCATTTACTATTAGCACACACTTAG 57.058 34.615 0.00 0.00 0.00 2.18
4096 4592 9.899661 AATCCATTTACTATTAGCACACACTTA 57.100 29.630 0.00 0.00 0.00 2.24
4097 4593 8.807948 AATCCATTTACTATTAGCACACACTT 57.192 30.769 0.00 0.00 0.00 3.16
4117 4613 5.392995 CCCAAATGGACCATGTATAATCCA 58.607 41.667 8.02 0.00 45.12 3.41
4118 4614 4.220602 GCCCAAATGGACCATGTATAATCC 59.779 45.833 8.02 0.00 37.39 3.01
4119 4615 4.082787 CGCCCAAATGGACCATGTATAATC 60.083 45.833 8.02 0.00 37.39 1.75
4120 4616 3.826157 CGCCCAAATGGACCATGTATAAT 59.174 43.478 8.02 0.00 37.39 1.28
4121 4617 3.117851 TCGCCCAAATGGACCATGTATAA 60.118 43.478 8.02 0.00 37.39 0.98
4122 4618 2.439880 TCGCCCAAATGGACCATGTATA 59.560 45.455 8.02 0.00 37.39 1.47
4123 4619 1.214175 TCGCCCAAATGGACCATGTAT 59.786 47.619 8.02 0.00 37.39 2.29
4124 4620 0.621082 TCGCCCAAATGGACCATGTA 59.379 50.000 8.02 0.00 37.39 2.29
4125 4621 0.033208 ATCGCCCAAATGGACCATGT 60.033 50.000 8.02 0.00 37.39 3.21
4126 4622 1.608590 GTATCGCCCAAATGGACCATG 59.391 52.381 8.02 0.00 37.39 3.66
4127 4623 1.214175 TGTATCGCCCAAATGGACCAT 59.786 47.619 0.00 0.00 37.39 3.55
4128 4624 0.621082 TGTATCGCCCAAATGGACCA 59.379 50.000 0.00 0.00 37.39 4.02
4129 4625 1.880027 GATGTATCGCCCAAATGGACC 59.120 52.381 0.00 0.00 37.39 4.46
4130 4626 2.549754 CAGATGTATCGCCCAAATGGAC 59.450 50.000 0.00 0.00 37.39 4.02
4131 4627 2.849942 CAGATGTATCGCCCAAATGGA 58.150 47.619 0.00 0.00 37.39 3.41
4132 4628 1.267806 GCAGATGTATCGCCCAAATGG 59.732 52.381 0.00 0.00 37.09 3.16
4133 4629 1.948834 TGCAGATGTATCGCCCAAATG 59.051 47.619 0.00 0.00 0.00 2.32
4134 4630 2.346766 TGCAGATGTATCGCCCAAAT 57.653 45.000 0.00 0.00 0.00 2.32
4135 4631 2.121291 TTGCAGATGTATCGCCCAAA 57.879 45.000 0.00 0.00 0.00 3.28
4136 4632 2.346766 ATTGCAGATGTATCGCCCAA 57.653 45.000 0.00 3.24 0.00 4.12
4137 4633 2.346766 AATTGCAGATGTATCGCCCA 57.653 45.000 0.00 0.00 0.00 5.36
4138 4634 5.447818 GCTATAAATTGCAGATGTATCGCCC 60.448 44.000 0.00 0.00 0.00 6.13
4139 4635 5.122239 TGCTATAAATTGCAGATGTATCGCC 59.878 40.000 10.36 0.00 33.81 5.54
4140 4636 6.017933 GTGCTATAAATTGCAGATGTATCGC 58.982 40.000 0.00 0.00 39.07 4.58
4141 4637 7.011773 GTGTGCTATAAATTGCAGATGTATCG 58.988 38.462 0.00 0.00 39.07 2.92
4142 4638 7.011773 CGTGTGCTATAAATTGCAGATGTATC 58.988 38.462 7.32 0.00 39.07 2.24
4143 4639 6.073058 CCGTGTGCTATAAATTGCAGATGTAT 60.073 38.462 12.30 0.00 39.07 2.29
4144 4640 5.236263 CCGTGTGCTATAAATTGCAGATGTA 59.764 40.000 12.30 0.00 39.07 2.29
4145 4641 4.035558 CCGTGTGCTATAAATTGCAGATGT 59.964 41.667 12.30 0.00 39.07 3.06
4146 4642 4.035558 ACCGTGTGCTATAAATTGCAGATG 59.964 41.667 8.19 8.19 39.07 2.90
4147 4643 4.199310 ACCGTGTGCTATAAATTGCAGAT 58.801 39.130 0.00 0.00 39.07 2.90
4148 4644 3.605634 ACCGTGTGCTATAAATTGCAGA 58.394 40.909 0.00 0.00 39.07 4.26
4149 4645 4.142708 TGAACCGTGTGCTATAAATTGCAG 60.143 41.667 0.00 0.00 39.07 4.41
4150 4646 3.753797 TGAACCGTGTGCTATAAATTGCA 59.246 39.130 0.00 0.00 36.25 4.08
4151 4647 4.095610 GTGAACCGTGTGCTATAAATTGC 58.904 43.478 0.00 0.00 0.00 3.56
4152 4648 5.545658 AGTGAACCGTGTGCTATAAATTG 57.454 39.130 0.00 0.00 0.00 2.32
4153 4649 4.328983 CGAGTGAACCGTGTGCTATAAATT 59.671 41.667 0.00 0.00 0.00 1.82
4154 4650 3.863424 CGAGTGAACCGTGTGCTATAAAT 59.137 43.478 0.00 0.00 0.00 1.40
4155 4651 3.057386 TCGAGTGAACCGTGTGCTATAAA 60.057 43.478 0.00 0.00 0.00 1.40
4156 4652 2.488937 TCGAGTGAACCGTGTGCTATAA 59.511 45.455 0.00 0.00 0.00 0.98
4157 4653 2.086094 TCGAGTGAACCGTGTGCTATA 58.914 47.619 0.00 0.00 0.00 1.31
4158 4654 0.885879 TCGAGTGAACCGTGTGCTAT 59.114 50.000 0.00 0.00 0.00 2.97
4159 4655 0.669619 TTCGAGTGAACCGTGTGCTA 59.330 50.000 0.00 0.00 0.00 3.49
4160 4656 0.179094 TTTCGAGTGAACCGTGTGCT 60.179 50.000 0.00 0.00 32.71 4.40
4161 4657 0.653636 TTTTCGAGTGAACCGTGTGC 59.346 50.000 0.00 0.00 32.71 4.57
4162 4658 2.286184 CCTTTTTCGAGTGAACCGTGTG 60.286 50.000 0.00 0.00 32.71 3.82
4163 4659 1.937899 CCTTTTTCGAGTGAACCGTGT 59.062 47.619 0.00 0.00 32.71 4.49
4164 4660 1.937899 ACCTTTTTCGAGTGAACCGTG 59.062 47.619 0.00 0.00 32.71 4.94
4165 4661 1.937899 CACCTTTTTCGAGTGAACCGT 59.062 47.619 0.00 0.00 32.71 4.83
4166 4662 1.937899 ACACCTTTTTCGAGTGAACCG 59.062 47.619 8.56 0.00 35.47 4.44
4167 4663 2.681344 ACACACCTTTTTCGAGTGAACC 59.319 45.455 8.56 0.00 35.47 3.62
4168 4664 3.126343 ACACACACCTTTTTCGAGTGAAC 59.874 43.478 8.56 0.00 35.47 3.18
4169 4665 3.126171 CACACACACCTTTTTCGAGTGAA 59.874 43.478 8.56 0.00 35.47 3.18
4170 4666 2.675844 CACACACACCTTTTTCGAGTGA 59.324 45.455 8.56 0.00 35.47 3.41
4171 4667 2.418628 ACACACACACCTTTTTCGAGTG 59.581 45.455 0.59 0.59 37.53 3.51
4172 4668 2.418628 CACACACACACCTTTTTCGAGT 59.581 45.455 0.00 0.00 0.00 4.18
4173 4669 2.418628 ACACACACACACCTTTTTCGAG 59.581 45.455 0.00 0.00 0.00 4.04
4174 4670 2.160615 CACACACACACACCTTTTTCGA 59.839 45.455 0.00 0.00 0.00 3.71
4175 4671 2.160615 TCACACACACACACCTTTTTCG 59.839 45.455 0.00 0.00 0.00 3.46
4176 4672 3.840890 TCACACACACACACCTTTTTC 57.159 42.857 0.00 0.00 0.00 2.29
4177 4673 3.761218 TCATCACACACACACACCTTTTT 59.239 39.130 0.00 0.00 0.00 1.94
4178 4674 3.351740 TCATCACACACACACACCTTTT 58.648 40.909 0.00 0.00 0.00 2.27
4179 4675 2.997980 TCATCACACACACACACCTTT 58.002 42.857 0.00 0.00 0.00 3.11
4180 4676 2.708216 TCATCACACACACACACCTT 57.292 45.000 0.00 0.00 0.00 3.50
4181 4677 2.936919 ATCATCACACACACACACCT 57.063 45.000 0.00 0.00 0.00 4.00
4182 4678 3.314913 TGAAATCATCACACACACACACC 59.685 43.478 0.00 0.00 31.50 4.16
4183 4679 4.550577 TGAAATCATCACACACACACAC 57.449 40.909 0.00 0.00 31.50 3.82
4193 4689 5.003879 CGTAAGCGAACGTGAAATCATCAC 61.004 45.833 5.81 0.00 46.78 3.06
4194 4690 3.060230 CGTAAGCGAACGTGAAATCATCA 59.940 43.478 5.81 0.00 41.33 3.07
4195 4691 3.584344 CGTAAGCGAACGTGAAATCATC 58.416 45.455 5.81 0.00 41.33 2.92
4196 4692 3.634730 CGTAAGCGAACGTGAAATCAT 57.365 42.857 5.81 0.00 41.33 2.45
4206 4702 1.425412 ACCATGTGACGTAAGCGAAC 58.575 50.000 0.00 0.00 45.62 3.95
4207 4703 2.063266 GAACCATGTGACGTAAGCGAA 58.937 47.619 0.00 0.00 45.62 4.70
4208 4704 1.271379 AGAACCATGTGACGTAAGCGA 59.729 47.619 0.00 0.00 45.62 4.93
4209 4705 1.710013 AGAACCATGTGACGTAAGCG 58.290 50.000 0.00 0.00 45.62 4.68
4210 4706 5.796350 AAATAGAACCATGTGACGTAAGC 57.204 39.130 0.00 0.00 45.62 3.09
4212 4708 6.938507 ACCTAAATAGAACCATGTGACGTAA 58.061 36.000 0.00 0.00 0.00 3.18
4213 4709 6.534475 ACCTAAATAGAACCATGTGACGTA 57.466 37.500 0.00 0.00 0.00 3.57
4214 4710 5.416271 ACCTAAATAGAACCATGTGACGT 57.584 39.130 0.00 0.00 0.00 4.34
4215 4711 7.837202 TTTACCTAAATAGAACCATGTGACG 57.163 36.000 0.00 0.00 0.00 4.35
4216 4712 9.174166 ACATTTACCTAAATAGAACCATGTGAC 57.826 33.333 0.00 0.00 34.36 3.67
4217 4713 9.747898 AACATTTACCTAAATAGAACCATGTGA 57.252 29.630 0.00 0.00 34.36 3.58
4220 4716 9.801873 CCAAACATTTACCTAAATAGAACCATG 57.198 33.333 0.00 0.00 34.36 3.66
4221 4717 9.762381 TCCAAACATTTACCTAAATAGAACCAT 57.238 29.630 0.00 0.00 34.36 3.55
4222 4718 9.238368 CTCCAAACATTTACCTAAATAGAACCA 57.762 33.333 0.00 0.00 34.36 3.67
4223 4719 9.457436 TCTCCAAACATTTACCTAAATAGAACC 57.543 33.333 0.00 0.00 34.36 3.62
4226 4722 9.627123 CCATCTCCAAACATTTACCTAAATAGA 57.373 33.333 0.00 0.00 34.36 1.98
4227 4723 9.408648 ACCATCTCCAAACATTTACCTAAATAG 57.591 33.333 0.00 0.00 34.36 1.73
4228 4724 9.184523 CACCATCTCCAAACATTTACCTAAATA 57.815 33.333 0.00 0.00 34.36 1.40
4307 4804 2.879462 GCTCGCGAGTGGGTTACG 60.879 66.667 34.46 9.89 0.00 3.18
4308 4805 0.739813 ATTGCTCGCGAGTGGGTTAC 60.740 55.000 34.46 17.94 0.00 2.50
4309 4806 0.459585 GATTGCTCGCGAGTGGGTTA 60.460 55.000 34.46 15.40 0.00 2.85
4327 4824 4.595538 GTCCACCGTGCCACGTGA 62.596 66.667 19.30 6.86 40.58 4.35
4336 4833 1.147600 GTCAACTTGGGTCCACCGT 59.852 57.895 0.00 0.00 44.64 4.83
4365 4862 0.235144 CGAGATCCGCGAGATAACGT 59.765 55.000 8.23 0.00 34.42 3.99
4477 5008 1.203237 TCGATCTTCCATGGCCTTCA 58.797 50.000 6.96 0.00 0.00 3.02
4479 5010 2.487986 GGATTCGATCTTCCATGGCCTT 60.488 50.000 6.96 0.00 31.99 4.35
4637 5189 0.250640 CAGAAGCCTCTGGTGTTGCT 60.251 55.000 4.26 0.00 44.72 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.