Multiple sequence alignment - TraesCS2A01G403700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G403700 chr2A 100.000 4234 0 0 1 4234 659275895 659280128 0.000000e+00 7819
1 TraesCS2A01G403700 chr2A 89.744 78 7 1 3835 3912 502778305 502778381 9.690000e-17 99
2 TraesCS2A01G403700 chr2D 93.348 3713 168 31 17 3674 515578952 515582640 0.000000e+00 5415
3 TraesCS2A01G403700 chr2D 88.202 356 23 8 3895 4234 515582624 515582976 1.420000e-109 407
4 TraesCS2A01G403700 chr2D 87.903 124 6 2 3674 3788 423376234 423376357 2.050000e-28 137
5 TraesCS2A01G403700 chr2D 96.875 64 2 0 3835 3898 284573562 284573625 1.610000e-19 108
6 TraesCS2A01G403700 chr2B 93.804 3615 153 32 86 3646 607053349 607056946 0.000000e+00 5369
7 TraesCS2A01G403700 chr2B 92.405 79 3 2 3835 3912 236254378 236254454 4.480000e-20 110
8 TraesCS2A01G403700 chr3A 88.757 169 15 3 3666 3830 15707620 15707452 2.000000e-48 204
9 TraesCS2A01G403700 chr3A 86.740 181 11 6 3659 3830 198172012 198172188 5.590000e-44 189
10 TraesCS2A01G403700 chr6A 88.690 168 10 2 3672 3830 379828016 379827849 3.340000e-46 196
11 TraesCS2A01G403700 chr6A 87.349 166 12 2 3674 3830 540045643 540045478 9.350000e-42 182
12 TraesCS2A01G403700 chr6A 92.958 71 5 0 3835 3905 62849070 62849140 2.080000e-18 104
13 TraesCS2A01G403700 chr3B 88.690 168 10 4 3672 3830 556450182 556450349 3.340000e-46 196
14 TraesCS2A01G403700 chr3B 88.166 169 10 5 3671 3830 185726137 185726304 4.320000e-45 193
15 TraesCS2A01G403700 chr1D 87.861 173 11 3 3667 3830 114012997 114012826 1.200000e-45 195
16 TraesCS2A01G403700 chr1D 94.203 69 4 0 3835 3903 120400771 120400839 5.790000e-19 106
17 TraesCS2A01G403700 chrUn 86.022 186 15 4 3656 3830 468628756 468628571 5.590000e-44 189
18 TraesCS2A01G403700 chr4B 87.952 166 11 2 3674 3830 283763722 283763557 2.010000e-43 187
19 TraesCS2A01G403700 chr4D 85.393 178 15 4 3662 3830 295023022 295022847 1.560000e-39 174
20 TraesCS2A01G403700 chr3D 95.455 66 3 0 3835 3900 606799560 606799625 5.790000e-19 106
21 TraesCS2A01G403700 chr7A 93.056 72 4 1 3831 3902 187057316 187057386 2.080000e-18 104
22 TraesCS2A01G403700 chr5D 94.118 68 4 0 3835 3902 550008958 550008891 2.080000e-18 104
23 TraesCS2A01G403700 chr1A 91.139 79 4 2 3835 3910 549844275 549844197 2.080000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G403700 chr2A 659275895 659280128 4233 False 7819 7819 100.000 1 4234 1 chr2A.!!$F2 4233
1 TraesCS2A01G403700 chr2D 515578952 515582976 4024 False 2911 5415 90.775 17 4234 2 chr2D.!!$F3 4217
2 TraesCS2A01G403700 chr2B 607053349 607056946 3597 False 5369 5369 93.804 86 3646 1 chr2B.!!$F2 3560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 982 0.179127 ATCTCATCAGGCACACGTCG 60.179 55.0 0.0 0.0 0.0 5.12 F
1628 1676 0.036388 GGATTGCGAGTTCTCCACCA 60.036 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2696 2751 0.737219 CAGGCATAGCAAGTCAAGGC 59.263 55.0 0.00 0.0 0.0 4.35 R
3374 3433 2.613026 TCGGCCACCATACAATACAG 57.387 50.0 2.24 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.032952 TGAGTATCATGCTTTTGTTAGACTTG 57.967 34.615 0.00 0.00 42.56 3.16
32 33 4.145876 TCATGCTTTTGTTAGACTTGCG 57.854 40.909 0.00 0.00 0.00 4.85
36 37 2.604614 GCTTTTGTTAGACTTGCGGTGG 60.605 50.000 0.00 0.00 0.00 4.61
87 88 9.796120 TTTTCTTTTACAAAGTGTTATGTCAGG 57.204 29.630 0.00 0.00 0.00 3.86
125 129 7.120923 TGTAGTTTCTTGTCACTAGGAACTT 57.879 36.000 16.90 3.62 38.07 2.66
126 130 8.241497 TGTAGTTTCTTGTCACTAGGAACTTA 57.759 34.615 16.90 5.79 38.07 2.24
134 138 6.861065 TGTCACTAGGAACTTAAAAAGCTG 57.139 37.500 0.00 0.00 41.75 4.24
212 220 1.964552 CATGTCCAGATGCTCCTTCC 58.035 55.000 0.00 0.00 0.00 3.46
215 223 0.915364 GTCCAGATGCTCCTTCCCTT 59.085 55.000 0.00 0.00 0.00 3.95
226 234 2.310052 CTCCTTCCCTTGGAGTTGGATT 59.690 50.000 0.00 0.00 44.42 3.01
227 235 2.041620 TCCTTCCCTTGGAGTTGGATTG 59.958 50.000 0.00 0.00 31.21 2.67
253 263 5.729974 ACAGGTTCGAACTAACTTGAAAC 57.270 39.130 26.32 6.97 38.37 2.78
296 306 0.315251 TCGTCCACTCTCAGCACAAG 59.685 55.000 0.00 0.00 0.00 3.16
318 328 2.054799 TGGCAGGGTCTTTCTACTTGT 58.945 47.619 0.00 0.00 0.00 3.16
330 340 6.535508 GTCTTTCTACTTGTGTTGACTGAAGT 59.464 38.462 0.00 0.00 33.32 3.01
331 341 6.757010 TCTTTCTACTTGTGTTGACTGAAGTC 59.243 38.462 3.41 3.41 44.97 3.01
352 362 1.005332 TCTCTCCTCTCCACAGTCCAG 59.995 57.143 0.00 0.00 0.00 3.86
370 381 3.027412 CCAGACTCCACAGTATACAGCT 58.973 50.000 5.50 0.00 30.63 4.24
377 388 5.221843 ACTCCACAGTATACAGCTTCCAAAA 60.222 40.000 5.50 0.00 0.00 2.44
381 392 6.653320 CCACAGTATACAGCTTCCAAAAACTA 59.347 38.462 5.50 0.00 0.00 2.24
383 394 8.177663 CACAGTATACAGCTTCCAAAAACTATG 58.822 37.037 5.50 0.00 0.00 2.23
415 426 2.653726 TGCTATGGTTTAGGTGCCATG 58.346 47.619 6.35 0.00 44.43 3.66
460 497 5.860941 TCATGCCACTTTAACCTTTTCAA 57.139 34.783 0.00 0.00 0.00 2.69
483 520 9.177608 TCAAGGAAATATGAGTCCAAATTAGTG 57.822 33.333 3.81 0.00 36.28 2.74
546 585 4.977963 CGACATTGTGTGCTCATTTTTCTT 59.022 37.500 0.00 0.00 0.00 2.52
554 593 8.578308 TGTGTGCTCATTTTTCTTGAAATTAG 57.422 30.769 0.00 0.00 0.00 1.73
560 599 9.905171 GCTCATTTTTCTTGAAATTAGTTCTCT 57.095 29.630 0.00 0.00 37.13 3.10
582 621 8.298140 TCTCTAAAGTAGAACTGCTTACTGAAC 58.702 37.037 5.68 0.00 34.44 3.18
583 622 7.948357 TCTAAAGTAGAACTGCTTACTGAACA 58.052 34.615 5.68 0.00 34.44 3.18
584 623 8.585881 TCTAAAGTAGAACTGCTTACTGAACAT 58.414 33.333 5.68 0.00 34.44 2.71
585 624 9.856488 CTAAAGTAGAACTGCTTACTGAACATA 57.144 33.333 5.68 0.00 34.44 2.29
586 625 8.535690 AAAGTAGAACTGCTTACTGAACATAC 57.464 34.615 5.68 0.00 34.44 2.39
587 626 7.228314 AGTAGAACTGCTTACTGAACATACA 57.772 36.000 0.00 0.00 0.00 2.29
588 627 7.667557 AGTAGAACTGCTTACTGAACATACAA 58.332 34.615 0.00 0.00 0.00 2.41
592 631 5.238583 ACTGCTTACTGAACATACAAGTCC 58.761 41.667 0.00 0.00 0.00 3.85
657 696 2.027745 TGCAAGTGGGAGAATGAGAGAC 60.028 50.000 0.00 0.00 0.00 3.36
658 697 2.235898 GCAAGTGGGAGAATGAGAGACT 59.764 50.000 0.00 0.00 0.00 3.24
727 768 7.537596 TCCACCAAAATGTTCTTGATATTGT 57.462 32.000 0.00 0.00 0.00 2.71
729 770 8.087750 TCCACCAAAATGTTCTTGATATTGTTC 58.912 33.333 0.00 0.00 0.00 3.18
732 773 8.306761 ACCAAAATGTTCTTGATATTGTTCTCC 58.693 33.333 0.00 0.00 0.00 3.71
738 779 6.180472 GTTCTTGATATTGTTCTCCTTCCCA 58.820 40.000 0.00 0.00 0.00 4.37
752 793 5.136220 TCTCCTTCCCACTCATTAGGATCTA 59.864 44.000 0.00 0.00 34.67 1.98
779 820 3.850173 TCCCTCCAAGCTTACCAAGTTAT 59.150 43.478 0.00 0.00 0.00 1.89
780 821 3.947834 CCCTCCAAGCTTACCAAGTTATG 59.052 47.826 0.00 0.00 0.00 1.90
811 852 7.834881 AATAATCAATTCCATCTCACTGCAT 57.165 32.000 0.00 0.00 0.00 3.96
820 861 1.059098 TCTCACTGCATCCCACAAGT 58.941 50.000 0.00 0.00 0.00 3.16
827 868 1.767036 CATCCCACAAGTCCCACCA 59.233 57.895 0.00 0.00 0.00 4.17
830 878 0.988832 TCCCACAAGTCCCACCATAC 59.011 55.000 0.00 0.00 0.00 2.39
854 902 8.373048 ACTGATTACTAGAAGTAGATCACTCG 57.627 38.462 0.00 0.00 36.04 4.18
862 910 2.925724 AGTAGATCACTCGAGGTCAGG 58.074 52.381 18.41 0.72 28.33 3.86
885 933 4.508861 GTGAACTCGTGCCAAGTAAAAGTA 59.491 41.667 0.00 0.00 0.00 2.24
888 936 6.093771 TGAACTCGTGCCAAGTAAAAGTAAAA 59.906 34.615 0.00 0.00 0.00 1.52
894 942 6.693545 CGTGCCAAGTAAAAGTAAAATTGACA 59.306 34.615 0.00 0.00 0.00 3.58
898 946 7.709182 GCCAAGTAAAAGTAAAATTGACAACCT 59.291 33.333 0.00 0.00 0.00 3.50
928 976 3.272574 TGAAAGGATCTCATCAGGCAC 57.727 47.619 0.00 0.00 0.00 5.01
934 982 0.179127 ATCTCATCAGGCACACGTCG 60.179 55.000 0.00 0.00 0.00 5.12
983 1031 3.307129 GGAAGGTGAGAAGAGAAGGGAAC 60.307 52.174 0.00 0.00 0.00 3.62
988 1036 3.517500 GTGAGAAGAGAAGGGAACTCCAT 59.482 47.826 0.00 0.00 42.68 3.41
990 1038 3.517500 GAGAAGAGAAGGGAACTCCATGT 59.482 47.826 0.00 0.00 42.68 3.21
1031 1079 2.089201 CATCACATCTTCTGCAGCCAA 58.911 47.619 9.47 0.00 0.00 4.52
1034 1082 0.886563 ACATCTTCTGCAGCCAAAGC 59.113 50.000 9.47 0.00 40.32 3.51
1059 1107 0.676466 TCATGGACGAACATGCACCC 60.676 55.000 15.77 0.00 46.02 4.61
1072 1120 1.271856 TGCACCCGAGATTCCAGTTA 58.728 50.000 0.00 0.00 0.00 2.24
1123 1171 2.179517 GCGTCTGGGAGAGTCACG 59.820 66.667 0.00 0.00 0.00 4.35
1129 1177 1.282157 TCTGGGAGAGTCACGAGATCA 59.718 52.381 0.00 0.00 0.00 2.92
1136 1184 4.576873 GGAGAGTCACGAGATCATACAGAA 59.423 45.833 0.00 0.00 0.00 3.02
1154 1202 2.037847 GCATGCACCCTTCCCCTT 59.962 61.111 14.21 0.00 0.00 3.95
1183 1231 1.168407 CCACACTGGCACACTCCTTG 61.168 60.000 0.00 0.00 0.00 3.61
1191 1239 2.031516 CACACTCCTTGCCTCTGCG 61.032 63.158 0.00 0.00 41.78 5.18
1226 1274 2.726351 CCTTCTGCGAGGACCCCTC 61.726 68.421 2.97 2.97 46.44 4.30
1294 1342 0.966179 TGACCTGTGAGTATGCACGT 59.034 50.000 0.00 0.00 41.63 4.49
1296 1344 1.202582 GACCTGTGAGTATGCACGTCT 59.797 52.381 0.00 0.00 41.63 4.18
1297 1345 1.202582 ACCTGTGAGTATGCACGTCTC 59.797 52.381 0.00 0.00 41.63 3.36
1338 1386 6.183360 TGTTCAGTGACATCTGACAGAAGTTA 60.183 38.462 14.14 7.90 43.01 2.24
1343 1391 4.832823 TGACATCTGACAGAAGTTAGACCA 59.167 41.667 14.14 5.16 42.33 4.02
1372 1420 2.019984 CCTTTTCAGTAGCATGGGAGC 58.980 52.381 0.00 0.00 0.00 4.70
1601 1649 4.385405 AGTGCTCTGCCCGTCAGC 62.385 66.667 0.00 0.00 42.56 4.26
1602 1650 4.385405 GTGCTCTGCCCGTCAGCT 62.385 66.667 0.00 0.00 42.56 4.24
1619 1667 0.745845 GCTGTGATGGGATTGCGAGT 60.746 55.000 0.00 0.00 0.00 4.18
1628 1676 0.036388 GGATTGCGAGTTCTCCACCA 60.036 55.000 0.00 0.00 0.00 4.17
1637 1685 2.633481 GAGTTCTCCACCAGTGTACCTT 59.367 50.000 0.00 0.00 0.00 3.50
1652 1700 3.717913 TGTACCTTGGGAACAGTACCTTT 59.282 43.478 0.00 0.00 44.54 3.11
1817 1868 1.840635 GGTTATTCTGGCTCTGGGAGT 59.159 52.381 0.00 0.00 31.39 3.85
1825 1876 1.492993 GGCTCTGGGAGTGAAAGGGT 61.493 60.000 0.00 0.00 31.39 4.34
1829 1880 3.566351 CTCTGGGAGTGAAAGGGTTTTT 58.434 45.455 0.00 0.00 0.00 1.94
1831 1882 3.053245 TCTGGGAGTGAAAGGGTTTTTCA 60.053 43.478 0.00 0.00 36.21 2.69
1856 1907 1.448985 GCCGAGTAATGCAGGTTTCA 58.551 50.000 0.00 0.00 0.00 2.69
1861 1912 4.414852 CGAGTAATGCAGGTTTCATTTGG 58.585 43.478 0.00 0.00 35.87 3.28
1920 1971 7.920682 GTGGTTACAGATCAAAAACAGAATTGT 59.079 33.333 0.00 0.00 39.87 2.71
1923 1974 9.173939 GTTACAGATCAAAAACAGAATTGTCAG 57.826 33.333 0.00 0.00 36.23 3.51
1935 1986 5.587844 ACAGAATTGTCAGATACCAATCAGC 59.412 40.000 0.00 0.00 30.71 4.26
1950 2001 1.713597 TCAGCATGAGCAACGTACTG 58.286 50.000 0.00 0.00 42.56 2.74
1962 2013 3.676646 GCAACGTACTGTTTCGGTAAGAT 59.323 43.478 8.21 0.00 39.29 2.40
2508 2559 5.061933 GCACATCGAATATCTACATGAGCAG 59.938 44.000 0.00 0.00 33.03 4.24
2556 2607 6.657541 TCCTTTTCAGATAAGCCGTATGTTTT 59.342 34.615 0.00 0.00 0.00 2.43
2562 2613 6.092122 TCAGATAAGCCGTATGTTTTGACTTG 59.908 38.462 0.00 0.00 0.00 3.16
2588 2639 5.362430 AGATGTTACTGCCAAGGTTTCAAAA 59.638 36.000 0.00 0.00 0.00 2.44
2589 2640 5.407407 TGTTACTGCCAAGGTTTCAAAAA 57.593 34.783 0.00 0.00 0.00 1.94
2615 2666 0.177373 TCTGCAGCTGAGCCATGTAG 59.823 55.000 20.43 2.88 0.00 2.74
2645 2700 7.600375 CGTCCTGTAGCATAAGATACAATGAAT 59.400 37.037 0.00 0.00 45.08 2.57
2678 2733 3.160545 CGGTTTCACATTATCGTTGCAC 58.839 45.455 0.00 0.00 0.00 4.57
2935 2991 2.362120 ATGCTGACTGCTTGCCCC 60.362 61.111 5.87 0.00 43.37 5.80
3074 3133 6.747414 ACCTGGTAATGACTTGCTATCATA 57.253 37.500 0.00 0.00 35.72 2.15
3155 3214 0.821711 TTTGCCTGGTCCCTGTTTCG 60.822 55.000 0.00 0.00 0.00 3.46
3281 3340 2.094494 CACCTCTACTTGTCACGCTCAT 60.094 50.000 0.00 0.00 0.00 2.90
3312 3371 2.288763 GGGGTGTTTACGACTTTACGGA 60.289 50.000 0.00 0.00 37.61 4.69
3374 3433 8.929746 ACTTTACTATACTAGTTTTGTTTCCGC 58.070 33.333 0.00 0.00 40.14 5.54
3402 3461 1.491668 ATGGTGGCCGATGTGTAGTA 58.508 50.000 0.00 0.00 0.00 1.82
3460 3519 2.255172 TGCGAAAACGGTGCCGATT 61.255 52.632 18.16 9.04 42.83 3.34
3537 3597 0.790814 GAACCGCACTGCTTGTACTC 59.209 55.000 0.00 0.00 0.00 2.59
3541 3601 0.642291 CGCACTGCTTGTACTCGATG 59.358 55.000 0.00 0.00 0.00 3.84
3600 3660 1.077501 ATGGCACGGCTGTTAGCAT 60.078 52.632 9.92 0.14 44.75 3.79
3681 3742 9.274206 AGAAAAAGAGGAAATATATAACTCCGC 57.726 33.333 8.37 8.37 32.91 5.54
3682 3743 7.981102 AAAAGAGGAAATATATAACTCCGCC 57.019 36.000 11.32 6.99 32.91 6.13
3683 3744 6.936968 AAGAGGAAATATATAACTCCGCCT 57.063 37.500 11.32 8.50 32.91 5.52
3684 3745 8.431910 AAAGAGGAAATATATAACTCCGCCTA 57.568 34.615 11.32 0.00 32.91 3.93
3685 3746 8.611051 AAGAGGAAATATATAACTCCGCCTAT 57.389 34.615 11.32 0.00 32.91 2.57
3687 3748 7.620094 AGAGGAAATATATAACTCCGCCTATGT 59.380 37.037 11.32 0.00 32.91 2.29
3688 3749 8.147244 AGGAAATATATAACTCCGCCTATGTT 57.853 34.615 7.49 0.00 32.91 2.71
3689 3750 8.041323 AGGAAATATATAACTCCGCCTATGTTG 58.959 37.037 7.49 0.00 32.91 3.33
3690 3751 7.822822 GGAAATATATAACTCCGCCTATGTTGT 59.177 37.037 0.00 0.00 0.00 3.32
3691 3752 8.773404 AAATATATAACTCCGCCTATGTTGTC 57.227 34.615 0.00 0.00 0.00 3.18
3692 3753 2.572191 TAACTCCGCCTATGTTGTCG 57.428 50.000 0.00 0.00 0.00 4.35
3693 3754 0.739813 AACTCCGCCTATGTTGTCGC 60.740 55.000 0.00 0.00 0.00 5.19
3694 3755 1.153647 CTCCGCCTATGTTGTCGCA 60.154 57.895 0.00 0.00 0.00 5.10
3695 3756 0.739462 CTCCGCCTATGTTGTCGCAA 60.739 55.000 0.00 0.00 0.00 4.85
3696 3757 1.017177 TCCGCCTATGTTGTCGCAAC 61.017 55.000 13.54 13.54 0.00 4.17
3697 3758 1.295357 CCGCCTATGTTGTCGCAACA 61.295 55.000 21.71 21.71 34.31 3.33
3698 3759 0.726827 CGCCTATGTTGTCGCAACAT 59.273 50.000 28.38 28.38 42.82 2.71
3699 3760 1.930503 CGCCTATGTTGTCGCAACATA 59.069 47.619 27.86 27.86 40.87 2.29
3703 3764 2.113860 ATGTTGTCGCAACATAGCCT 57.886 45.000 26.11 11.22 38.94 4.58
3704 3765 1.155889 TGTTGTCGCAACATAGCCTG 58.844 50.000 17.55 0.00 34.73 4.85
3705 3766 1.156736 GTTGTCGCAACATAGCCTGT 58.843 50.000 14.97 0.00 40.84 4.00
3706 3767 1.128692 GTTGTCGCAACATAGCCTGTC 59.871 52.381 14.97 0.00 36.98 3.51
3707 3768 0.391130 TGTCGCAACATAGCCTGTCC 60.391 55.000 0.00 0.00 36.98 4.02
3708 3769 0.108138 GTCGCAACATAGCCTGTCCT 60.108 55.000 0.00 0.00 36.98 3.85
3709 3770 1.136305 GTCGCAACATAGCCTGTCCTA 59.864 52.381 0.00 0.00 36.98 2.94
3710 3771 1.828595 TCGCAACATAGCCTGTCCTAA 59.171 47.619 0.00 0.00 36.98 2.69
3711 3772 2.235155 TCGCAACATAGCCTGTCCTAAA 59.765 45.455 0.00 0.00 36.98 1.85
3712 3773 2.351726 CGCAACATAGCCTGTCCTAAAC 59.648 50.000 0.00 0.00 36.98 2.01
3713 3774 2.683362 GCAACATAGCCTGTCCTAAACC 59.317 50.000 0.00 0.00 36.98 3.27
3714 3775 2.936498 CAACATAGCCTGTCCTAAACCG 59.064 50.000 0.00 0.00 36.98 4.44
3715 3776 1.485066 ACATAGCCTGTCCTAAACCGG 59.515 52.381 0.00 0.00 35.45 5.28
3716 3777 1.760613 CATAGCCTGTCCTAAACCGGA 59.239 52.381 9.46 0.00 34.29 5.14
3717 3778 2.170012 TAGCCTGTCCTAAACCGGAT 57.830 50.000 9.46 0.00 34.29 4.18
3718 3779 2.170012 AGCCTGTCCTAAACCGGATA 57.830 50.000 9.46 0.00 34.29 2.59
3719 3780 2.474112 AGCCTGTCCTAAACCGGATAA 58.526 47.619 9.46 0.00 34.29 1.75
3720 3781 2.841881 AGCCTGTCCTAAACCGGATAAA 59.158 45.455 9.46 0.00 34.29 1.40
3721 3782 3.118371 AGCCTGTCCTAAACCGGATAAAG 60.118 47.826 9.46 0.00 34.29 1.85
3722 3783 3.805207 CCTGTCCTAAACCGGATAAAGG 58.195 50.000 9.46 7.66 34.29 3.11
3723 3784 3.453353 CCTGTCCTAAACCGGATAAAGGA 59.547 47.826 9.46 10.24 34.29 3.36
3724 3785 4.443034 CCTGTCCTAAACCGGATAAAGGAG 60.443 50.000 9.46 2.08 37.03 3.69
3725 3786 3.453353 TGTCCTAAACCGGATAAAGGAGG 59.547 47.826 9.46 4.68 37.03 4.30
3726 3787 3.708121 GTCCTAAACCGGATAAAGGAGGA 59.292 47.826 9.46 7.18 37.03 3.71
3727 3788 3.965347 TCCTAAACCGGATAAAGGAGGAG 59.035 47.826 9.46 0.00 32.60 3.69
3728 3789 3.071167 CCTAAACCGGATAAAGGAGGAGG 59.929 52.174 9.46 0.00 0.00 4.30
3729 3790 1.508256 AACCGGATAAAGGAGGAGGG 58.492 55.000 9.46 0.00 0.00 4.30
3730 3791 0.342313 ACCGGATAAAGGAGGAGGGT 59.658 55.000 9.46 0.00 0.00 4.34
3731 3792 1.274242 ACCGGATAAAGGAGGAGGGTT 60.274 52.381 9.46 0.00 0.00 4.11
3732 3793 1.141053 CCGGATAAAGGAGGAGGGTTG 59.859 57.143 0.00 0.00 0.00 3.77
3733 3794 1.838077 CGGATAAAGGAGGAGGGTTGT 59.162 52.381 0.00 0.00 0.00 3.32
3734 3795 2.420129 CGGATAAAGGAGGAGGGTTGTG 60.420 54.545 0.00 0.00 0.00 3.33
3735 3796 2.844348 GGATAAAGGAGGAGGGTTGTGA 59.156 50.000 0.00 0.00 0.00 3.58
3736 3797 3.459969 GGATAAAGGAGGAGGGTTGTGAT 59.540 47.826 0.00 0.00 0.00 3.06
3737 3798 4.658901 GGATAAAGGAGGAGGGTTGTGATA 59.341 45.833 0.00 0.00 0.00 2.15
3738 3799 5.221742 GGATAAAGGAGGAGGGTTGTGATAG 60.222 48.000 0.00 0.00 0.00 2.08
3739 3800 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
3740 3801 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
3741 3802 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
3742 3803 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
3743 3804 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
3744 3805 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
3745 3806 1.282157 GAGGGTTGTGATAGGCTTGGT 59.718 52.381 0.00 0.00 0.00 3.67
3746 3807 1.004745 AGGGTTGTGATAGGCTTGGTG 59.995 52.381 0.00 0.00 0.00 4.17
3747 3808 1.004277 GGGTTGTGATAGGCTTGGTGA 59.996 52.381 0.00 0.00 0.00 4.02
3748 3809 2.359900 GGTTGTGATAGGCTTGGTGAG 58.640 52.381 0.00 0.00 0.00 3.51
3763 3824 4.846779 TGGTGAGCCAACATAAAAACTC 57.153 40.909 0.00 0.00 42.83 3.01
3764 3825 4.469657 TGGTGAGCCAACATAAAAACTCT 58.530 39.130 0.00 0.00 42.83 3.24
3765 3826 4.892934 TGGTGAGCCAACATAAAAACTCTT 59.107 37.500 0.00 0.00 42.83 2.85
3766 3827 6.065374 TGGTGAGCCAACATAAAAACTCTTA 58.935 36.000 0.00 0.00 42.83 2.10
3767 3828 6.719370 TGGTGAGCCAACATAAAAACTCTTAT 59.281 34.615 0.00 0.00 42.83 1.73
3768 3829 7.029563 GGTGAGCCAACATAAAAACTCTTATG 58.970 38.462 2.55 2.55 38.52 1.90
3769 3830 7.094377 GGTGAGCCAACATAAAAACTCTTATGA 60.094 37.037 9.67 0.00 37.42 2.15
3770 3831 8.296713 GTGAGCCAACATAAAAACTCTTATGAA 58.703 33.333 9.67 0.00 40.34 2.57
3771 3832 8.514594 TGAGCCAACATAAAAACTCTTATGAAG 58.485 33.333 9.67 2.95 40.34 3.02
3772 3833 8.635765 AGCCAACATAAAAACTCTTATGAAGA 57.364 30.769 9.67 0.00 40.34 2.87
3773 3834 9.247861 AGCCAACATAAAAACTCTTATGAAGAT 57.752 29.630 9.67 0.00 40.34 2.40
3774 3835 9.294030 GCCAACATAAAAACTCTTATGAAGATG 57.706 33.333 9.67 4.36 40.34 2.90
3796 3857 9.933723 AGATGAAACCTAAAAGATTTTCATTGG 57.066 29.630 9.19 0.00 44.74 3.16
3797 3858 9.154847 GATGAAACCTAAAAGATTTTCATTGGG 57.845 33.333 9.19 0.00 44.74 4.12
3798 3859 7.449247 TGAAACCTAAAAGATTTTCATTGGGG 58.551 34.615 0.00 0.00 33.96 4.96
3799 3860 5.420725 ACCTAAAAGATTTTCATTGGGGC 57.579 39.130 0.00 0.00 0.00 5.80
3800 3861 4.081697 ACCTAAAAGATTTTCATTGGGGCG 60.082 41.667 0.00 0.00 0.00 6.13
3801 3862 4.081697 CCTAAAAGATTTTCATTGGGGCGT 60.082 41.667 0.00 0.00 0.00 5.68
3802 3863 5.126384 CCTAAAAGATTTTCATTGGGGCGTA 59.874 40.000 0.00 0.00 0.00 4.42
3803 3864 5.476091 AAAAGATTTTCATTGGGGCGTAA 57.524 34.783 0.00 0.00 0.00 3.18
3804 3865 4.450082 AAGATTTTCATTGGGGCGTAAC 57.550 40.909 0.00 0.00 0.00 2.50
3805 3866 2.758423 AGATTTTCATTGGGGCGTAACC 59.242 45.455 0.00 0.00 37.93 2.85
3806 3867 2.296073 TTTTCATTGGGGCGTAACCT 57.704 45.000 0.00 0.00 39.10 3.50
3807 3868 2.296073 TTTCATTGGGGCGTAACCTT 57.704 45.000 0.00 0.00 39.10 3.50
3808 3869 1.828979 TTCATTGGGGCGTAACCTTC 58.171 50.000 0.00 0.00 39.10 3.46
3809 3870 0.988832 TCATTGGGGCGTAACCTTCT 59.011 50.000 0.00 0.00 39.10 2.85
3810 3871 1.065709 TCATTGGGGCGTAACCTTCTC 60.066 52.381 0.00 0.00 39.10 2.87
3811 3872 0.988832 ATTGGGGCGTAACCTTCTCA 59.011 50.000 0.00 0.00 39.10 3.27
3812 3873 0.323629 TTGGGGCGTAACCTTCTCAG 59.676 55.000 0.00 0.00 39.10 3.35
3813 3874 1.449778 GGGGCGTAACCTTCTCAGC 60.450 63.158 0.00 0.00 39.10 4.26
3814 3875 1.810030 GGGCGTAACCTTCTCAGCG 60.810 63.158 0.00 0.00 39.10 5.18
3815 3876 1.214589 GGCGTAACCTTCTCAGCGA 59.785 57.895 0.00 0.00 34.51 4.93
3816 3877 1.077089 GGCGTAACCTTCTCAGCGAC 61.077 60.000 0.00 0.00 34.51 5.19
3817 3878 1.403972 GCGTAACCTTCTCAGCGACG 61.404 60.000 0.00 0.00 0.00 5.12
3818 3879 1.403972 CGTAACCTTCTCAGCGACGC 61.404 60.000 13.03 13.03 0.00 5.19
3819 3880 1.154093 TAACCTTCTCAGCGACGCG 60.154 57.895 15.18 3.53 0.00 6.01
3831 3892 2.027024 GACGCGCCACATCGGATA 59.973 61.111 5.73 0.00 36.56 2.59
3832 3893 2.279252 ACGCGCCACATCGGATAC 60.279 61.111 5.73 0.00 36.56 2.24
3833 3894 2.279186 CGCGCCACATCGGATACA 60.279 61.111 0.00 0.00 36.56 2.29
3834 3895 2.302952 CGCGCCACATCGGATACAG 61.303 63.158 0.00 0.00 36.56 2.74
3835 3896 1.956170 GCGCCACATCGGATACAGG 60.956 63.158 0.00 0.00 36.56 4.00
3836 3897 1.441729 CGCCACATCGGATACAGGT 59.558 57.895 0.00 0.00 36.56 4.00
3837 3898 0.179084 CGCCACATCGGATACAGGTT 60.179 55.000 0.00 0.00 36.56 3.50
3838 3899 1.742411 CGCCACATCGGATACAGGTTT 60.742 52.381 0.00 0.00 36.56 3.27
3839 3900 1.940613 GCCACATCGGATACAGGTTTC 59.059 52.381 0.00 0.00 36.56 2.78
3840 3901 2.679639 GCCACATCGGATACAGGTTTCA 60.680 50.000 0.00 0.00 36.56 2.69
3841 3902 2.936498 CCACATCGGATACAGGTTTCAC 59.064 50.000 0.00 0.00 36.56 3.18
3842 3903 2.936498 CACATCGGATACAGGTTTCACC 59.064 50.000 0.00 0.00 38.99 4.02
3843 3904 6.434661 CCACATCGGATACAGGTTTCACCT 62.435 50.000 0.00 0.00 44.32 4.00
3853 3914 2.983907 GGTTTCACCTCTAGCCTACC 57.016 55.000 0.00 0.00 34.73 3.18
3854 3915 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
3855 3916 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
3856 3917 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
3857 3918 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
3858 3919 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
3859 3920 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
3860 3921 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
3861 3922 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
3862 3923 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
3863 3924 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
3864 3925 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
3865 3926 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
3879 3940 7.899178 CAACTTGTTTGGAACTAAAGGTTTT 57.101 32.000 0.00 0.00 38.41 2.43
3880 3941 7.738345 CAACTTGTTTGGAACTAAAGGTTTTG 58.262 34.615 0.00 0.00 38.41 2.44
3881 3942 6.999950 ACTTGTTTGGAACTAAAGGTTTTGT 58.000 32.000 0.00 0.00 38.41 2.83
3882 3943 7.446769 ACTTGTTTGGAACTAAAGGTTTTGTT 58.553 30.769 2.52 2.52 38.47 2.83
3883 3944 7.386573 ACTTGTTTGGAACTAAAGGTTTTGTTG 59.613 33.333 6.95 0.00 36.52 3.33
3884 3945 6.760291 TGTTTGGAACTAAAGGTTTTGTTGT 58.240 32.000 6.95 0.00 36.52 3.32
3885 3946 7.217906 TGTTTGGAACTAAAGGTTTTGTTGTT 58.782 30.769 6.95 0.00 36.52 2.83
3886 3947 7.171678 TGTTTGGAACTAAAGGTTTTGTTGTTG 59.828 33.333 6.95 0.00 36.52 3.33
3887 3948 6.347859 TGGAACTAAAGGTTTTGTTGTTGT 57.652 33.333 6.95 0.00 36.52 3.32
3888 3949 6.760291 TGGAACTAAAGGTTTTGTTGTTGTT 58.240 32.000 6.95 0.00 36.52 2.83
3889 3950 6.647067 TGGAACTAAAGGTTTTGTTGTTGTTG 59.353 34.615 6.95 0.00 36.52 3.33
3890 3951 6.647481 GGAACTAAAGGTTTTGTTGTTGTTGT 59.353 34.615 6.95 0.00 36.52 3.32
3891 3952 7.171848 GGAACTAAAGGTTTTGTTGTTGTTGTT 59.828 33.333 6.95 0.00 36.52 2.83
3892 3953 7.414814 ACTAAAGGTTTTGTTGTTGTTGTTG 57.585 32.000 0.00 0.00 0.00 3.33
3893 3954 6.987404 ACTAAAGGTTTTGTTGTTGTTGTTGT 59.013 30.769 0.00 0.00 0.00 3.32
3894 3955 8.142551 ACTAAAGGTTTTGTTGTTGTTGTTGTA 58.857 29.630 0.00 0.00 0.00 2.41
3946 4007 9.001049 GTAGAAGATGAAATATATGTAGCGACG 57.999 37.037 0.00 0.00 0.00 5.12
3947 4008 7.594714 AGAAGATGAAATATATGTAGCGACGT 58.405 34.615 0.00 0.00 0.00 4.34
3995 4063 3.270877 CCTGCGTCTAAACTAGCCATTT 58.729 45.455 0.00 0.00 0.00 2.32
4003 4071 7.305474 CGTCTAAACTAGCCATTTTCATTTGT 58.695 34.615 0.00 0.00 0.00 2.83
4018 4086 4.326826 TCATTTGTGACATCTGGACTTCC 58.673 43.478 0.00 0.00 0.00 3.46
4029 4097 4.137116 TCTGGACTTCCGATAACCATTG 57.863 45.455 0.00 0.00 39.43 2.82
4036 4104 2.892334 CGATAACCATTGGGCCGCG 61.892 63.158 7.78 0.00 37.90 6.46
4055 4123 1.332904 CGTCGTGAGCCTGTTTGAAAC 60.333 52.381 0.14 0.14 0.00 2.78
4058 4126 0.317854 GTGAGCCTGTTTGAAACGCC 60.318 55.000 3.37 0.00 0.00 5.68
4061 4129 2.642700 CCTGTTTGAAACGCCGGG 59.357 61.111 2.18 0.00 0.00 5.73
4062 4130 2.642700 CTGTTTGAAACGCCGGGG 59.357 61.111 18.33 18.33 0.00 5.73
4095 4164 2.942905 TGGGAGGGGTTCTAAGGAATT 58.057 47.619 0.00 0.00 33.71 2.17
4119 4188 2.035321 CGCCTTTTAGCCCTTGTTTTGA 59.965 45.455 0.00 0.00 0.00 2.69
4133 4202 7.875554 GCCCTTGTTTTGATTTGTAGGATTTTA 59.124 33.333 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.890629 AGTCTAACAAAAGCATGATACTCATAA 57.109 29.630 0.00 0.00 34.28 1.90
3 4 9.890629 AAGTCTAACAAAAGCATGATACTCATA 57.109 29.630 0.00 0.00 34.28 2.15
4 5 8.671921 CAAGTCTAACAAAAGCATGATACTCAT 58.328 33.333 0.00 0.00 37.65 2.90
5 6 7.361201 GCAAGTCTAACAAAAGCATGATACTCA 60.361 37.037 0.00 0.00 0.00 3.41
6 7 6.963805 GCAAGTCTAACAAAAGCATGATACTC 59.036 38.462 0.00 0.00 0.00 2.59
7 8 6.402550 CGCAAGTCTAACAAAAGCATGATACT 60.403 38.462 0.00 0.00 0.00 2.12
8 9 5.734498 CGCAAGTCTAACAAAAGCATGATAC 59.266 40.000 0.00 0.00 0.00 2.24
9 10 5.163764 CCGCAAGTCTAACAAAAGCATGATA 60.164 40.000 0.00 0.00 0.00 2.15
10 11 4.379813 CCGCAAGTCTAACAAAAGCATGAT 60.380 41.667 0.00 0.00 0.00 2.45
11 12 3.058293 CCGCAAGTCTAACAAAAGCATGA 60.058 43.478 0.00 0.00 0.00 3.07
12 13 3.236816 CCGCAAGTCTAACAAAAGCATG 58.763 45.455 0.00 0.00 0.00 4.06
13 14 2.884639 ACCGCAAGTCTAACAAAAGCAT 59.115 40.909 0.00 0.00 0.00 3.79
14 15 2.032799 CACCGCAAGTCTAACAAAAGCA 59.967 45.455 0.00 0.00 0.00 3.91
15 16 2.604614 CCACCGCAAGTCTAACAAAAGC 60.605 50.000 0.00 0.00 0.00 3.51
30 31 4.506255 CCCCCTCCATTCCACCGC 62.506 72.222 0.00 0.00 0.00 5.68
61 62 9.796120 CCTGACATAACACTTTGTAAAAGAAAA 57.204 29.630 6.73 0.00 0.00 2.29
62 63 9.179909 TCCTGACATAACACTTTGTAAAAGAAA 57.820 29.630 6.73 0.00 0.00 2.52
63 64 8.740123 TCCTGACATAACACTTTGTAAAAGAA 57.260 30.769 6.73 0.00 0.00 2.52
64 65 8.918202 ATCCTGACATAACACTTTGTAAAAGA 57.082 30.769 6.73 0.00 0.00 2.52
114 115 5.531287 ACCACAGCTTTTTAAGTTCCTAGTG 59.469 40.000 0.00 0.00 0.00 2.74
125 129 8.001881 TGAAAAATCAGTACCACAGCTTTTTA 57.998 30.769 0.00 0.00 0.00 1.52
126 130 6.872920 TGAAAAATCAGTACCACAGCTTTTT 58.127 32.000 0.00 0.00 0.00 1.94
134 138 3.120304 GCGACCTGAAAAATCAGTACCAC 60.120 47.826 5.23 0.00 36.06 4.16
207 215 2.225117 ACAATCCAACTCCAAGGGAAGG 60.225 50.000 0.00 0.00 33.73 3.46
212 220 3.221771 TGTTGACAATCCAACTCCAAGG 58.778 45.455 0.00 0.00 44.87 3.61
215 223 2.174639 ACCTGTTGACAATCCAACTCCA 59.825 45.455 0.00 0.00 44.87 3.86
226 234 4.395959 AGTTAGTTCGAACCTGTTGACA 57.604 40.909 24.22 0.00 0.00 3.58
227 235 4.807304 TCAAGTTAGTTCGAACCTGTTGAC 59.193 41.667 24.22 12.53 0.00 3.18
253 263 1.303317 GTTGGTGTGCCAGGGTAGG 60.303 63.158 0.00 0.00 46.91 3.18
271 281 1.599606 CTGAGAGTGGACGAGGGGTG 61.600 65.000 0.00 0.00 0.00 4.61
275 285 1.214062 GTGCTGAGAGTGGACGAGG 59.786 63.158 0.00 0.00 0.00 4.63
296 306 3.274288 CAAGTAGAAAGACCCTGCCATC 58.726 50.000 0.00 0.00 0.00 3.51
330 340 1.283613 GGACTGTGGAGAGGAGAGAGA 59.716 57.143 0.00 0.00 0.00 3.10
331 341 1.005332 TGGACTGTGGAGAGGAGAGAG 59.995 57.143 0.00 0.00 0.00 3.20
352 362 3.447586 TGGAAGCTGTATACTGTGGAGTC 59.552 47.826 10.96 2.94 33.21 3.36
370 381 4.463050 AGGGACACCATAGTTTTTGGAA 57.537 40.909 0.00 0.00 40.13 3.53
377 388 4.862641 AGCATAAAGGGACACCATAGTT 57.137 40.909 0.00 0.00 40.13 2.24
381 392 3.463329 ACCATAGCATAAAGGGACACCAT 59.537 43.478 0.00 0.00 40.13 3.55
383 394 3.577805 ACCATAGCATAAAGGGACACC 57.422 47.619 0.00 0.00 0.00 4.16
433 444 8.592809 TGAAAAGGTTAAAGTGGCATGATTATT 58.407 29.630 0.00 0.00 0.00 1.40
434 445 8.133024 TGAAAAGGTTAAAGTGGCATGATTAT 57.867 30.769 0.00 0.00 0.00 1.28
510 549 4.037565 ACACAATGTCGAGTGACTCAAGTA 59.962 41.667 13.67 0.00 45.70 2.24
560 599 9.635520 GTATGTTCAGTAAGCAGTTCTACTTTA 57.364 33.333 0.00 0.00 0.00 1.85
562 601 7.667557 TGTATGTTCAGTAAGCAGTTCTACTT 58.332 34.615 0.00 0.00 0.00 2.24
609 648 1.142667 TCTGAAAGGATGTGTGTGCCA 59.857 47.619 0.00 0.00 0.00 4.92
727 768 4.074799 TCCTAATGAGTGGGAAGGAGAA 57.925 45.455 0.00 0.00 32.60 2.87
729 770 4.230455 AGATCCTAATGAGTGGGAAGGAG 58.770 47.826 0.00 0.00 39.62 3.69
732 773 8.986929 AATTTTAGATCCTAATGAGTGGGAAG 57.013 34.615 0.00 0.00 32.53 3.46
738 779 7.350921 TGGAGGGAATTTTAGATCCTAATGAGT 59.649 37.037 0.00 0.00 35.95 3.41
752 793 4.126520 TGGTAAGCTTGGAGGGAATTTT 57.873 40.909 9.86 0.00 0.00 1.82
779 820 8.064389 TGAGATGGAATTGATTATTAAACCCCA 58.936 33.333 0.00 0.00 0.00 4.96
780 821 8.360390 GTGAGATGGAATTGATTATTAAACCCC 58.640 37.037 0.00 0.00 0.00 4.95
811 852 0.988832 GTATGGTGGGACTTGTGGGA 59.011 55.000 0.00 0.00 0.00 4.37
820 861 6.441222 ACTTCTAGTAATCAGTATGGTGGGA 58.559 40.000 0.00 0.00 36.16 4.37
830 878 8.596271 TCGAGTGATCTACTTCTAGTAATCAG 57.404 38.462 0.00 0.00 40.53 2.90
850 898 1.249407 GAGTTCACCTGACCTCGAGT 58.751 55.000 12.31 0.00 0.00 4.18
854 902 0.667792 GCACGAGTTCACCTGACCTC 60.668 60.000 0.00 0.00 31.23 3.85
862 910 3.311596 ACTTTTACTTGGCACGAGTTCAC 59.688 43.478 0.00 0.00 0.00 3.18
870 918 7.995463 TGTCAATTTTACTTTTACTTGGCAC 57.005 32.000 0.00 0.00 0.00 5.01
888 936 8.579863 CCTTTCAAATTCTAAGAGGTTGTCAAT 58.420 33.333 0.00 0.00 0.00 2.57
894 942 8.386264 TGAGATCCTTTCAAATTCTAAGAGGTT 58.614 33.333 0.00 0.00 0.00 3.50
898 946 9.610705 CTGATGAGATCCTTTCAAATTCTAAGA 57.389 33.333 0.00 0.00 0.00 2.10
928 976 0.170339 TCAGAGTGTATGCCGACGTG 59.830 55.000 0.00 0.00 0.00 4.49
934 982 3.437049 GTGGTCTTTTCAGAGTGTATGCC 59.563 47.826 0.00 0.00 0.00 4.40
971 1019 3.519913 GGTACATGGAGTTCCCTTCTCTT 59.480 47.826 0.00 0.00 31.90 2.85
983 1031 7.079451 AGGGTCATTTTATAGGTACATGGAG 57.921 40.000 0.00 0.00 0.00 3.86
988 1036 8.751215 ATGGATAGGGTCATTTTATAGGTACA 57.249 34.615 0.00 0.00 0.00 2.90
990 1038 8.822805 GTGATGGATAGGGTCATTTTATAGGTA 58.177 37.037 0.00 0.00 0.00 3.08
1031 1079 5.734220 GCATGTTCGTCCATGAAATATGCTT 60.734 40.000 17.28 0.00 43.99 3.91
1034 1082 4.971830 GTGCATGTTCGTCCATGAAATATG 59.028 41.667 17.28 3.06 43.99 1.78
1059 1107 6.740110 ACTGCTATAACTAACTGGAATCTCG 58.260 40.000 0.00 0.00 0.00 4.04
1123 1171 3.497640 GGTGCATGCTTCTGTATGATCTC 59.502 47.826 20.33 0.00 38.33 2.75
1129 1177 2.648059 GAAGGGTGCATGCTTCTGTAT 58.352 47.619 20.33 0.00 0.00 2.29
1136 1184 1.214305 TAAGGGGAAGGGTGCATGCT 61.214 55.000 20.33 0.00 0.00 3.79
1226 1274 3.357079 GTGTGCGGGCTGGTGAAG 61.357 66.667 0.00 0.00 0.00 3.02
1227 1275 4.182433 TGTGTGCGGGCTGGTGAA 62.182 61.111 0.00 0.00 0.00 3.18
1294 1342 3.544684 ACAAGCATCAACAAGTGTGAGA 58.455 40.909 0.00 0.00 0.00 3.27
1296 1344 3.693578 TGAACAAGCATCAACAAGTGTGA 59.306 39.130 0.00 0.00 0.00 3.58
1297 1345 4.031418 TGAACAAGCATCAACAAGTGTG 57.969 40.909 0.00 0.00 0.00 3.82
1338 1386 4.956075 ACTGAAAAGGTTGTTTCATGGTCT 59.044 37.500 1.16 0.00 44.38 3.85
1343 1391 6.449698 CATGCTACTGAAAAGGTTGTTTCAT 58.550 36.000 1.16 0.00 44.38 2.57
1372 1420 1.078918 TCGTTGCTGCTCCCATGAG 60.079 57.895 0.00 0.00 41.84 2.90
1601 1649 1.667724 GAACTCGCAATCCCATCACAG 59.332 52.381 0.00 0.00 0.00 3.66
1602 1650 1.278985 AGAACTCGCAATCCCATCACA 59.721 47.619 0.00 0.00 0.00 3.58
1619 1667 1.697432 CCAAGGTACACTGGTGGAGAA 59.303 52.381 5.70 0.00 34.19 2.87
1628 1676 2.636403 GGTACTGTTCCCAAGGTACACT 59.364 50.000 0.00 0.00 37.03 3.55
1637 1685 1.213182 TGCACAAAGGTACTGTTCCCA 59.787 47.619 0.00 0.00 40.86 4.37
1652 1700 1.680860 CCCATCATGCTCTCTTGCACA 60.681 52.381 0.00 0.00 46.33 4.57
1817 1868 2.957474 CCCTCCTGAAAAACCCTTTCA 58.043 47.619 0.43 0.43 36.98 2.69
1825 1876 1.354101 TACTCGGCCCTCCTGAAAAA 58.646 50.000 0.00 0.00 0.00 1.94
1829 1880 1.686325 GCATTACTCGGCCCTCCTGA 61.686 60.000 0.00 0.00 0.00 3.86
1831 1882 1.689233 TGCATTACTCGGCCCTCCT 60.689 57.895 0.00 0.00 0.00 3.69
1861 1912 2.615912 GCATCTGGTGAAATCCTAGCAC 59.384 50.000 0.00 0.00 0.00 4.40
1920 1971 3.135167 TGCTCATGCTGATTGGTATCTGA 59.865 43.478 0.00 0.00 40.48 3.27
1923 1974 3.303593 CGTTGCTCATGCTGATTGGTATC 60.304 47.826 0.00 0.00 40.48 2.24
1935 1986 2.159841 CCGAAACAGTACGTTGCTCATG 60.160 50.000 0.00 0.00 38.07 3.07
1950 2001 4.965119 AGCATTCCAATCTTACCGAAAC 57.035 40.909 0.00 0.00 0.00 2.78
1962 2013 8.748412 ACTTAGCAATACAATTTAGCATTCCAA 58.252 29.630 0.00 0.00 0.00 3.53
2451 2502 6.721704 TCATACAACACTGATGCTCTATCT 57.278 37.500 0.00 0.00 36.71 1.98
2460 2511 6.349611 GCTTGATGGTTTCATACAACACTGAT 60.350 38.462 0.00 0.00 33.34 2.90
2588 2639 2.288640 GGCTCAGCTGCAGAACATTTTT 60.289 45.455 20.43 0.00 34.04 1.94
2589 2640 1.271656 GGCTCAGCTGCAGAACATTTT 59.728 47.619 20.43 0.00 34.04 1.82
2615 2666 7.142306 TGTATCTTATGCTACAGGACGTATC 57.858 40.000 0.00 0.00 0.00 2.24
2645 2700 1.031235 TGAAACCGTCGGTGTGAGTA 58.969 50.000 19.67 0.00 35.34 2.59
2696 2751 0.737219 CAGGCATAGCAAGTCAAGGC 59.263 55.000 0.00 0.00 0.00 4.35
2935 2991 7.094463 ACTCAATAGCTGTCCAAATCAGAAAAG 60.094 37.037 0.00 0.00 35.20 2.27
3281 3340 2.623889 CGTAAACACCCCAACCAATTCA 59.376 45.455 0.00 0.00 0.00 2.57
3312 3371 3.687698 ACGCAAGCAAAATAACCGACTAT 59.312 39.130 0.00 0.00 45.62 2.12
3374 3433 2.613026 TCGGCCACCATACAATACAG 57.387 50.000 2.24 0.00 0.00 2.74
3402 3461 6.402981 AGACCCCCAACTTTGTTATTCTAT 57.597 37.500 0.00 0.00 0.00 1.98
3541 3601 4.551702 AAGGGTAAAATGCCATGGAAAC 57.448 40.909 18.40 0.00 0.00 2.78
3674 3735 0.739813 GCGACAACATAGGCGGAGTT 60.740 55.000 0.00 0.00 0.00 3.01
3675 3736 1.153628 GCGACAACATAGGCGGAGT 60.154 57.895 0.00 0.00 0.00 3.85
3676 3737 0.739462 TTGCGACAACATAGGCGGAG 60.739 55.000 0.00 0.00 0.00 4.63
3679 3740 0.726827 ATGTTGCGACAACATAGGCG 59.273 50.000 26.11 0.00 38.94 5.52
3683 3744 2.935849 CAGGCTATGTTGCGACAACATA 59.064 45.455 27.86 27.86 40.87 2.29
3684 3745 1.739466 CAGGCTATGTTGCGACAACAT 59.261 47.619 28.38 28.38 42.82 2.71
3685 3746 1.155889 CAGGCTATGTTGCGACAACA 58.844 50.000 21.71 21.71 39.66 3.33
3687 3748 1.438651 GACAGGCTATGTTGCGACAA 58.561 50.000 11.67 0.00 44.17 3.18
3688 3749 0.391130 GGACAGGCTATGTTGCGACA 60.391 55.000 9.77 9.77 44.17 4.35
3689 3750 0.108138 AGGACAGGCTATGTTGCGAC 60.108 55.000 0.00 0.00 44.17 5.19
3690 3751 1.480789 TAGGACAGGCTATGTTGCGA 58.519 50.000 0.00 0.00 44.17 5.10
3691 3752 2.309528 TTAGGACAGGCTATGTTGCG 57.690 50.000 0.00 0.00 44.17 4.85
3692 3753 2.683362 GGTTTAGGACAGGCTATGTTGC 59.317 50.000 0.00 0.00 44.17 4.17
3693 3754 2.936498 CGGTTTAGGACAGGCTATGTTG 59.064 50.000 0.00 0.00 44.17 3.33
3694 3755 2.093128 CCGGTTTAGGACAGGCTATGTT 60.093 50.000 0.00 0.00 44.17 2.71
3696 3757 1.760613 TCCGGTTTAGGACAGGCTATG 59.239 52.381 0.00 0.00 42.63 2.23
3697 3758 2.170012 TCCGGTTTAGGACAGGCTAT 57.830 50.000 0.00 0.00 42.63 2.97
3698 3759 2.170012 ATCCGGTTTAGGACAGGCTA 57.830 50.000 0.00 0.00 44.07 3.93
3699 3760 2.170012 TATCCGGTTTAGGACAGGCT 57.830 50.000 0.00 0.00 44.07 4.58
3700 3761 2.994186 TTATCCGGTTTAGGACAGGC 57.006 50.000 0.00 0.00 44.07 4.85
3701 3762 3.453353 TCCTTTATCCGGTTTAGGACAGG 59.547 47.826 0.00 0.00 44.07 4.00
3702 3763 4.443034 CCTCCTTTATCCGGTTTAGGACAG 60.443 50.000 0.00 0.00 44.07 3.51
3703 3764 3.453353 CCTCCTTTATCCGGTTTAGGACA 59.547 47.826 0.00 0.00 44.07 4.02
3704 3765 3.708121 TCCTCCTTTATCCGGTTTAGGAC 59.292 47.826 0.00 0.00 44.07 3.85
3705 3766 3.965347 CTCCTCCTTTATCCGGTTTAGGA 59.035 47.826 0.00 9.09 45.54 2.94
3706 3767 3.071167 CCTCCTCCTTTATCCGGTTTAGG 59.929 52.174 0.00 4.83 0.00 2.69
3707 3768 3.071167 CCCTCCTCCTTTATCCGGTTTAG 59.929 52.174 0.00 0.00 0.00 1.85
3708 3769 3.043418 CCCTCCTCCTTTATCCGGTTTA 58.957 50.000 0.00 0.00 0.00 2.01
3709 3770 1.844497 CCCTCCTCCTTTATCCGGTTT 59.156 52.381 0.00 0.00 0.00 3.27
3710 3771 1.274242 ACCCTCCTCCTTTATCCGGTT 60.274 52.381 0.00 0.00 0.00 4.44
3711 3772 0.342313 ACCCTCCTCCTTTATCCGGT 59.658 55.000 0.00 0.00 0.00 5.28
3712 3773 1.141053 CAACCCTCCTCCTTTATCCGG 59.859 57.143 0.00 0.00 0.00 5.14
3713 3774 1.838077 ACAACCCTCCTCCTTTATCCG 59.162 52.381 0.00 0.00 0.00 4.18
3714 3775 2.844348 TCACAACCCTCCTCCTTTATCC 59.156 50.000 0.00 0.00 0.00 2.59
3715 3776 4.779993 ATCACAACCCTCCTCCTTTATC 57.220 45.455 0.00 0.00 0.00 1.75
3716 3777 4.660771 CCTATCACAACCCTCCTCCTTTAT 59.339 45.833 0.00 0.00 0.00 1.40
3717 3778 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
3718 3779 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
3719 3780 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
3720 3781 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
3721 3782 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
3722 3783 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
3723 3784 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
3724 3785 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
3725 3786 1.282157 ACCAAGCCTATCACAACCCTC 59.718 52.381 0.00 0.00 0.00 4.30
3726 3787 1.004745 CACCAAGCCTATCACAACCCT 59.995 52.381 0.00 0.00 0.00 4.34
3727 3788 1.004277 TCACCAAGCCTATCACAACCC 59.996 52.381 0.00 0.00 0.00 4.11
3728 3789 2.359900 CTCACCAAGCCTATCACAACC 58.640 52.381 0.00 0.00 0.00 3.77
3729 3790 1.740025 GCTCACCAAGCCTATCACAAC 59.260 52.381 0.00 0.00 45.92 3.32
3730 3791 2.113860 GCTCACCAAGCCTATCACAA 57.886 50.000 0.00 0.00 45.92 3.33
3731 3792 3.861341 GCTCACCAAGCCTATCACA 57.139 52.632 0.00 0.00 45.92 3.58
3742 3803 7.309133 CATAAGAGTTTTTATGTTGGCTCACCA 60.309 37.037 0.00 0.00 38.51 4.17
3743 3804 5.453567 AAGAGTTTTTATGTTGGCTCACC 57.546 39.130 0.00 0.00 0.00 4.02
3744 3805 7.816640 TCATAAGAGTTTTTATGTTGGCTCAC 58.183 34.615 5.86 0.00 40.36 3.51
3745 3806 7.994425 TCATAAGAGTTTTTATGTTGGCTCA 57.006 32.000 5.86 0.00 40.36 4.26
3746 3807 8.730680 TCTTCATAAGAGTTTTTATGTTGGCTC 58.269 33.333 5.86 0.00 40.36 4.70
3747 3808 8.635765 TCTTCATAAGAGTTTTTATGTTGGCT 57.364 30.769 5.86 0.00 40.36 4.75
3748 3809 9.294030 CATCTTCATAAGAGTTTTTATGTTGGC 57.706 33.333 5.86 0.00 41.61 4.52
3770 3831 9.933723 CCAATGAAAATCTTTTAGGTTTCATCT 57.066 29.630 10.06 1.01 45.40 2.90
3771 3832 9.154847 CCCAATGAAAATCTTTTAGGTTTCATC 57.845 33.333 10.06 0.95 45.40 2.92
3773 3834 7.449247 CCCCAATGAAAATCTTTTAGGTTTCA 58.551 34.615 0.00 0.00 42.42 2.69
3774 3835 6.371548 GCCCCAATGAAAATCTTTTAGGTTTC 59.628 38.462 0.00 0.00 0.00 2.78
3775 3836 6.237901 GCCCCAATGAAAATCTTTTAGGTTT 58.762 36.000 0.00 0.00 0.00 3.27
3776 3837 5.568624 CGCCCCAATGAAAATCTTTTAGGTT 60.569 40.000 0.00 0.00 0.00 3.50
3777 3838 4.081697 CGCCCCAATGAAAATCTTTTAGGT 60.082 41.667 0.00 0.00 0.00 3.08
3778 3839 4.081697 ACGCCCCAATGAAAATCTTTTAGG 60.082 41.667 0.00 0.00 0.00 2.69
3779 3840 5.072040 ACGCCCCAATGAAAATCTTTTAG 57.928 39.130 0.00 0.00 0.00 1.85
3780 3841 6.391537 GTTACGCCCCAATGAAAATCTTTTA 58.608 36.000 0.00 0.00 0.00 1.52
3781 3842 5.234752 GTTACGCCCCAATGAAAATCTTTT 58.765 37.500 0.00 0.00 0.00 2.27
3782 3843 4.322424 GGTTACGCCCCAATGAAAATCTTT 60.322 41.667 0.00 0.00 0.00 2.52
3783 3844 3.194755 GGTTACGCCCCAATGAAAATCTT 59.805 43.478 0.00 0.00 0.00 2.40
3784 3845 2.758423 GGTTACGCCCCAATGAAAATCT 59.242 45.455 0.00 0.00 0.00 2.40
3785 3846 2.758423 AGGTTACGCCCCAATGAAAATC 59.242 45.455 0.00 0.00 38.26 2.17
3786 3847 2.815158 AGGTTACGCCCCAATGAAAAT 58.185 42.857 0.00 0.00 38.26 1.82
3787 3848 2.296073 AGGTTACGCCCCAATGAAAA 57.704 45.000 0.00 0.00 38.26 2.29
3788 3849 2.164338 GAAGGTTACGCCCCAATGAAA 58.836 47.619 0.00 0.00 38.26 2.69
3789 3850 1.353022 AGAAGGTTACGCCCCAATGAA 59.647 47.619 0.00 0.00 38.26 2.57
3790 3851 0.988832 AGAAGGTTACGCCCCAATGA 59.011 50.000 0.00 0.00 38.26 2.57
3791 3852 1.339631 TGAGAAGGTTACGCCCCAATG 60.340 52.381 0.00 0.00 38.26 2.82
3792 3853 0.988832 TGAGAAGGTTACGCCCCAAT 59.011 50.000 0.00 0.00 38.26 3.16
3793 3854 0.323629 CTGAGAAGGTTACGCCCCAA 59.676 55.000 0.00 0.00 38.26 4.12
3794 3855 1.980052 CTGAGAAGGTTACGCCCCA 59.020 57.895 0.00 0.00 38.26 4.96
3795 3856 1.449778 GCTGAGAAGGTTACGCCCC 60.450 63.158 0.00 0.00 38.26 5.80
3796 3857 1.810030 CGCTGAGAAGGTTACGCCC 60.810 63.158 0.00 0.00 38.26 6.13
3797 3858 1.077089 GTCGCTGAGAAGGTTACGCC 61.077 60.000 0.00 0.00 37.58 5.68
3798 3859 1.403972 CGTCGCTGAGAAGGTTACGC 61.404 60.000 0.00 0.00 0.00 4.42
3799 3860 1.403972 GCGTCGCTGAGAAGGTTACG 61.404 60.000 10.68 0.00 0.00 3.18
3800 3861 1.403972 CGCGTCGCTGAGAAGGTTAC 61.404 60.000 16.36 0.00 0.00 2.50
3801 3862 1.154093 CGCGTCGCTGAGAAGGTTA 60.154 57.895 16.36 0.00 0.00 2.85
3802 3863 2.430921 CGCGTCGCTGAGAAGGTT 60.431 61.111 16.36 0.00 0.00 3.50
3814 3875 2.027024 TATCCGATGTGGCGCGTC 59.973 61.111 2.29 2.29 37.80 5.19
3815 3876 2.279252 GTATCCGATGTGGCGCGT 60.279 61.111 8.43 0.00 37.80 6.01
3816 3877 2.279186 TGTATCCGATGTGGCGCG 60.279 61.111 0.00 0.00 37.80 6.86
3817 3878 1.956170 CCTGTATCCGATGTGGCGC 60.956 63.158 0.00 0.00 37.80 6.53
3818 3879 0.179084 AACCTGTATCCGATGTGGCG 60.179 55.000 0.00 0.00 37.80 5.69
3819 3880 1.940613 GAAACCTGTATCCGATGTGGC 59.059 52.381 0.00 0.00 37.80 5.01
3820 3881 2.936498 GTGAAACCTGTATCCGATGTGG 59.064 50.000 0.00 0.00 40.09 4.17
3835 3896 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
3836 3897 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
3837 3898 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
3838 3899 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
3839 3900 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
3840 3901 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
3841 3902 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
3842 3903 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
3843 3904 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
3844 3905 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
3845 3906 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
3846 3907 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
3855 3916 7.386573 ACAAAACCTTTAGTTCCAAACAAGTTG 59.613 33.333 0.00 0.00 37.88 3.16
3856 3917 7.446769 ACAAAACCTTTAGTTCCAAACAAGTT 58.553 30.769 0.00 0.00 37.88 2.66
3857 3918 6.999950 ACAAAACCTTTAGTTCCAAACAAGT 58.000 32.000 0.00 0.00 37.88 3.16
3858 3919 7.386573 ACAACAAAACCTTTAGTTCCAAACAAG 59.613 33.333 0.00 0.00 37.88 3.16
3859 3920 7.217906 ACAACAAAACCTTTAGTTCCAAACAA 58.782 30.769 0.00 0.00 37.88 2.83
3860 3921 6.760291 ACAACAAAACCTTTAGTTCCAAACA 58.240 32.000 0.00 0.00 37.88 2.83
3861 3922 7.171848 ACAACAACAAAACCTTTAGTTCCAAAC 59.828 33.333 0.00 0.00 37.88 2.93
3862 3923 7.217906 ACAACAACAAAACCTTTAGTTCCAAA 58.782 30.769 0.00 0.00 37.88 3.28
3863 3924 6.760291 ACAACAACAAAACCTTTAGTTCCAA 58.240 32.000 0.00 0.00 37.88 3.53
3864 3925 6.347859 ACAACAACAAAACCTTTAGTTCCA 57.652 33.333 0.00 0.00 37.88 3.53
3865 3926 6.647481 ACAACAACAACAAAACCTTTAGTTCC 59.353 34.615 0.00 0.00 37.88 3.62
3866 3927 7.646446 ACAACAACAACAAAACCTTTAGTTC 57.354 32.000 0.00 0.00 37.88 3.01
3867 3928 7.496263 ACAACAACAACAACAAAACCTTTAGTT 59.504 29.630 0.00 0.00 41.81 2.24
3868 3929 6.987404 ACAACAACAACAACAAAACCTTTAGT 59.013 30.769 0.00 0.00 0.00 2.24
3869 3930 7.414814 ACAACAACAACAACAAAACCTTTAG 57.585 32.000 0.00 0.00 0.00 1.85
3870 3931 8.882415 TTACAACAACAACAACAAAACCTTTA 57.118 26.923 0.00 0.00 0.00 1.85
3871 3932 7.787725 TTACAACAACAACAACAAAACCTTT 57.212 28.000 0.00 0.00 0.00 3.11
3872 3933 7.787725 TTTACAACAACAACAACAAAACCTT 57.212 28.000 0.00 0.00 0.00 3.50
3873 3934 7.787725 TTTTACAACAACAACAACAAAACCT 57.212 28.000 0.00 0.00 0.00 3.50
3874 3935 8.336080 TCTTTTTACAACAACAACAACAAAACC 58.664 29.630 0.00 0.00 0.00 3.27
3875 3936 9.364110 CTCTTTTTACAACAACAACAACAAAAC 57.636 29.630 0.00 0.00 0.00 2.43
3876 3937 8.552034 CCTCTTTTTACAACAACAACAACAAAA 58.448 29.630 0.00 0.00 0.00 2.44
3877 3938 7.926555 TCCTCTTTTTACAACAACAACAACAAA 59.073 29.630 0.00 0.00 0.00 2.83
3878 3939 7.434492 TCCTCTTTTTACAACAACAACAACAA 58.566 30.769 0.00 0.00 0.00 2.83
3879 3940 6.982852 TCCTCTTTTTACAACAACAACAACA 58.017 32.000 0.00 0.00 0.00 3.33
3880 3941 7.876896 TTCCTCTTTTTACAACAACAACAAC 57.123 32.000 0.00 0.00 0.00 3.32
3920 3981 9.001049 CGTCGCTACATATATTTCATCTTCTAC 57.999 37.037 0.00 0.00 0.00 2.59
3921 3982 8.727910 ACGTCGCTACATATATTTCATCTTCTA 58.272 33.333 0.00 0.00 0.00 2.10
3922 3983 7.539022 CACGTCGCTACATATATTTCATCTTCT 59.461 37.037 0.00 0.00 0.00 2.85
3923 3984 7.326305 ACACGTCGCTACATATATTTCATCTTC 59.674 37.037 0.00 0.00 0.00 2.87
3924 3985 7.145985 ACACGTCGCTACATATATTTCATCTT 58.854 34.615 0.00 0.00 0.00 2.40
3925 3986 6.678878 ACACGTCGCTACATATATTTCATCT 58.321 36.000 0.00 0.00 0.00 2.90
3926 3987 6.929587 ACACGTCGCTACATATATTTCATC 57.070 37.500 0.00 0.00 0.00 2.92
3927 3988 7.027760 CCTACACGTCGCTACATATATTTCAT 58.972 38.462 0.00 0.00 0.00 2.57
3928 3989 6.376177 CCTACACGTCGCTACATATATTTCA 58.624 40.000 0.00 0.00 0.00 2.69
3929 3990 5.285607 GCCTACACGTCGCTACATATATTTC 59.714 44.000 0.00 0.00 0.00 2.17
3930 3991 5.159209 GCCTACACGTCGCTACATATATTT 58.841 41.667 0.00 0.00 0.00 1.40
3931 3992 4.216902 TGCCTACACGTCGCTACATATATT 59.783 41.667 0.00 0.00 0.00 1.28
3932 3993 3.754850 TGCCTACACGTCGCTACATATAT 59.245 43.478 0.00 0.00 0.00 0.86
3933 3994 3.140623 TGCCTACACGTCGCTACATATA 58.859 45.455 0.00 0.00 0.00 0.86
3934 3995 1.951602 TGCCTACACGTCGCTACATAT 59.048 47.619 0.00 0.00 0.00 1.78
3935 3996 1.381522 TGCCTACACGTCGCTACATA 58.618 50.000 0.00 0.00 0.00 2.29
3936 3997 0.528924 TTGCCTACACGTCGCTACAT 59.471 50.000 0.00 0.00 0.00 2.29
3937 3998 0.314618 TTTGCCTACACGTCGCTACA 59.685 50.000 0.00 0.00 0.00 2.74
3938 3999 1.636988 ATTTGCCTACACGTCGCTAC 58.363 50.000 0.00 0.00 0.00 3.58
3939 4000 2.373540 AATTTGCCTACACGTCGCTA 57.626 45.000 0.00 0.00 0.00 4.26
3940 4001 2.373540 TAATTTGCCTACACGTCGCT 57.626 45.000 0.00 0.00 0.00 4.93
3941 4002 2.286184 CCATAATTTGCCTACACGTCGC 60.286 50.000 0.00 0.00 0.00 5.19
3942 4003 2.286833 CCCATAATTTGCCTACACGTCG 59.713 50.000 0.00 0.00 0.00 5.12
3943 4004 2.032924 GCCCATAATTTGCCTACACGTC 59.967 50.000 0.00 0.00 0.00 4.34
3944 4005 2.021457 GCCCATAATTTGCCTACACGT 58.979 47.619 0.00 0.00 0.00 4.49
3945 4006 1.336755 GGCCCATAATTTGCCTACACG 59.663 52.381 0.00 0.00 42.01 4.49
3946 4007 2.383855 TGGCCCATAATTTGCCTACAC 58.616 47.619 0.00 0.00 45.56 2.90
3947 4008 2.836636 TGGCCCATAATTTGCCTACA 57.163 45.000 0.00 0.00 45.56 2.74
3995 4063 4.761739 GGAAGTCCAGATGTCACAAATGAA 59.238 41.667 0.00 0.00 34.30 2.57
4003 4071 3.132289 GGTTATCGGAAGTCCAGATGTCA 59.868 47.826 12.19 0.00 33.58 3.58
4018 4086 2.892334 CGCGGCCCAATGGTTATCG 61.892 63.158 0.00 0.00 0.00 2.92
4036 4104 1.332904 CGTTTCAAACAGGCTCACGAC 60.333 52.381 0.22 0.00 0.00 4.34
4039 4107 0.317854 GGCGTTTCAAACAGGCTCAC 60.318 55.000 0.22 0.00 0.00 3.51
4042 4110 2.551912 CCGGCGTTTCAAACAGGCT 61.552 57.895 6.01 0.00 0.00 4.58
4058 4126 0.036483 CCATTTGGGCTTTTTCCCCG 60.036 55.000 0.00 0.00 45.95 5.73
4075 4144 2.680439 ATTCCTTAGAACCCCTCCCA 57.320 50.000 0.00 0.00 33.97 4.37
4095 4164 0.694196 ACAAGGGCTAAAAGGCGGTA 59.306 50.000 0.00 0.00 42.43 4.02
4171 4240 7.630082 TGTTTAGCACATACTCCCTCTAAAAT 58.370 34.615 0.00 0.00 30.76 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.