Multiple sequence alignment - TraesCS2A01G403500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G403500 chr2A 100.000 3670 0 0 1 3670 659183744 659187413 0.000000e+00 6778.0
1 TraesCS2A01G403500 chr2A 83.230 161 17 8 1346 1497 32548270 32548111 4.940000e-29 139.0
2 TraesCS2A01G403500 chr2A 82.209 163 20 5 1344 1497 68867263 68867425 8.270000e-27 132.0
3 TraesCS2A01G403500 chr2D 96.267 1500 48 7 1206 2699 515079738 515081235 0.000000e+00 2453.0
4 TraesCS2A01G403500 chr2D 91.188 783 37 9 2824 3589 515081238 515082005 0.000000e+00 1035.0
5 TraesCS2A01G403500 chr2D 92.525 495 35 2 4 497 515077259 515077752 0.000000e+00 708.0
6 TraesCS2A01G403500 chr2D 96.200 421 14 1 798 1216 515078356 515078776 0.000000e+00 688.0
7 TraesCS2A01G403500 chr2D 82.456 114 15 2 1380 1493 495122825 495122933 1.080000e-15 95.3
8 TraesCS2A01G403500 chr2B 88.136 1062 108 13 1642 2697 606788430 606789479 0.000000e+00 1247.0
9 TraesCS2A01G403500 chr2B 86.802 591 75 2 2109 2699 606790562 606791149 0.000000e+00 656.0
10 TraesCS2A01G403500 chr2B 91.066 347 17 3 809 1151 606787801 606788137 1.200000e-124 457.0
11 TraesCS2A01G403500 chr2B 91.463 82 7 0 3589 3670 627772806 627772887 3.000000e-21 113.0
12 TraesCS2A01G403500 chr3B 84.190 525 59 6 1 502 225801333 225801856 4.260000e-134 488.0
13 TraesCS2A01G403500 chr3B 93.388 121 8 0 2703 2823 741467360 741467240 2.910000e-41 180.0
14 TraesCS2A01G403500 chr3B 89.024 82 7 2 3590 3670 14224984 14224904 2.330000e-17 100.0
15 TraesCS2A01G403500 chr3B 88.889 81 9 0 3590 3670 671336918 671336998 2.330000e-17 100.0
16 TraesCS2A01G403500 chr3B 96.875 32 1 0 312 343 369240648 369240679 2.000000e-03 54.7
17 TraesCS2A01G403500 chr6B 91.057 246 19 3 259 502 120333463 120333707 2.730000e-86 329.0
18 TraesCS2A01G403500 chr6B 84.848 264 38 2 5 267 120333090 120333352 7.810000e-67 265.0
19 TraesCS2A01G403500 chr6B 92.742 124 9 0 2701 2824 676482878 676482755 2.910000e-41 180.0
20 TraesCS2A01G403500 chr6B 87.805 82 10 0 3589 3670 542503870 542503951 3.020000e-16 97.1
21 TraesCS2A01G403500 chr5B 80.139 287 54 3 7 291 588688910 588688625 1.030000e-50 211.0
22 TraesCS2A01G403500 chr5B 92.063 126 10 0 2701 2826 67025140 67025265 1.050000e-40 178.0
23 TraesCS2A01G403500 chr5B 91.406 128 11 0 2701 2828 141947599 141947726 3.770000e-40 176.0
24 TraesCS2A01G403500 chr5B 89.157 83 7 2 3589 3670 51012714 51012795 6.480000e-18 102.0
25 TraesCS2A01G403500 chr5B 88.750 80 9 0 3590 3669 52305771 52305692 8.390000e-17 99.0
26 TraesCS2A01G403500 chr5B 87.805 82 8 2 3590 3670 267548108 267548028 1.080000e-15 95.3
27 TraesCS2A01G403500 chr1D 79.585 289 51 5 7 291 114633034 114632750 2.240000e-47 200.0
28 TraesCS2A01G403500 chr1D 92.063 126 10 0 2701 2826 436145068 436145193 1.050000e-40 178.0
29 TraesCS2A01G403500 chr5D 79.623 265 52 2 7 269 550166439 550166703 4.840000e-44 189.0
30 TraesCS2A01G403500 chr5D 82.911 158 21 3 1347 1498 506073677 506073520 1.780000e-28 137.0
31 TraesCS2A01G403500 chr7B 78.694 291 53 7 7 291 407605232 407604945 6.260000e-43 185.0
32 TraesCS2A01G403500 chr7B 82.353 68 8 4 279 343 64665448 64665514 5.120000e-04 56.5
33 TraesCS2A01G403500 chr6D 93.443 122 8 0 2701 2822 315652642 315652521 8.100000e-42 182.0
34 TraesCS2A01G403500 chr6D 77.941 204 41 2 68 268 54661180 54661382 1.380000e-24 124.0
35 TraesCS2A01G403500 chr6D 80.000 165 22 5 1344 1497 295046167 295046003 1.080000e-20 111.0
36 TraesCS2A01G403500 chr4D 93.443 122 8 0 2701 2822 315600782 315600661 8.100000e-42 182.0
37 TraesCS2A01G403500 chr4D 79.602 201 41 0 68 268 418435120 418434920 1.060000e-30 145.0
38 TraesCS2A01G403500 chr4B 93.443 122 8 0 2701 2822 647646227 647646348 8.100000e-42 182.0
39 TraesCS2A01G403500 chr4B 91.071 56 4 1 1197 1251 96176785 96176840 1.410000e-09 75.0
40 TraesCS2A01G403500 chr1B 92.063 126 10 0 2701 2826 682095860 682095735 1.050000e-40 178.0
41 TraesCS2A01G403500 chr1B 90.244 82 6 2 3589 3669 667305761 667305841 5.010000e-19 106.0
42 TraesCS2A01G403500 chr6A 85.065 154 21 1 1346 1497 516599898 516599745 4.910000e-34 156.0
43 TraesCS2A01G403500 chr1A 83.660 153 17 5 1344 1489 527956457 527956306 1.780000e-28 137.0
44 TraesCS2A01G403500 chr1A 89.831 59 5 1 511 568 526736704 526736762 1.410000e-09 75.0
45 TraesCS2A01G403500 chr1A 88.136 59 6 1 511 568 526736134 526736192 6.580000e-08 69.4
46 TraesCS2A01G403500 chr5A 83.217 143 17 4 1344 1479 525599298 525599440 1.380000e-24 124.0
47 TraesCS2A01G403500 chr5A 80.000 160 17 8 1350 1496 510218202 510218045 1.800000e-18 104.0
48 TraesCS2A01G403500 chr5A 97.368 38 1 0 1196 1233 154623590 154623627 8.510000e-07 65.8
49 TraesCS2A01G403500 chr3A 79.630 162 24 4 1337 1489 600310324 600310163 1.390000e-19 108.0
50 TraesCS2A01G403500 chr3A 90.244 82 8 0 3589 3670 730807456 730807537 1.390000e-19 108.0
51 TraesCS2A01G403500 chr3A 87.342 79 10 0 1347 1425 541703648 541703570 1.400000e-14 91.6
52 TraesCS2A01G403500 chrUn 94.737 57 3 0 1200 1256 95561503 95561447 5.050000e-14 89.8
53 TraesCS2A01G403500 chrUn 93.478 46 3 0 1201 1246 24663247 24663292 6.580000e-08 69.4
54 TraesCS2A01G403500 chr4A 92.308 52 3 1 1197 1247 11318033 11317982 5.080000e-09 73.1
55 TraesCS2A01G403500 chr3D 80.460 87 13 4 260 343 589733180 589733265 3.060000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G403500 chr2A 659183744 659187413 3669 False 6778.000000 6778 100.0000 1 3670 1 chr2A.!!$F2 3669
1 TraesCS2A01G403500 chr2D 515077259 515082005 4746 False 1221.000000 2453 94.0450 4 3589 4 chr2D.!!$F2 3585
2 TraesCS2A01G403500 chr2B 606787801 606791149 3348 False 786.666667 1247 88.6680 809 2699 3 chr2B.!!$F2 1890
3 TraesCS2A01G403500 chr3B 225801333 225801856 523 False 488.000000 488 84.1900 1 502 1 chr3B.!!$F1 501
4 TraesCS2A01G403500 chr6B 120333090 120333707 617 False 297.000000 329 87.9525 5 502 2 chr6B.!!$F2 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 945 0.036732 GAGTTGGATCAGGCCACACA 59.963 55.0 5.01 0.0 37.75 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2700 4261 0.388134 GACTACAAGCACCGAAGCGA 60.388 55.0 0.0 0.0 40.15 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.593209 GACGGCAACCAGTCAACGA 60.593 57.895 0.00 0.00 37.34 3.85
93 95 1.154543 CGCCGGTCGTAGCAAAAAC 60.155 57.895 1.90 0.00 0.00 2.43
114 116 3.262135 CAACGACGGTTGTAGCAAAAT 57.738 42.857 0.50 0.00 46.69 1.82
145 148 0.389948 GTCGTCCCGAGTTGCATCTT 60.390 55.000 0.00 0.00 36.23 2.40
156 159 5.163622 CCGAGTTGCATCTTTACCATGAATT 60.164 40.000 0.00 0.00 0.00 2.17
199 203 6.596497 CACCGGTAGTAGTAAAAACCAATGAT 59.404 38.462 6.87 0.00 32.04 2.45
201 205 6.819649 CCGGTAGTAGTAAAAACCAATGATGA 59.180 38.462 0.00 0.00 32.04 2.92
210 214 7.816031 AGTAAAAACCAATGATGATTGCAGAAG 59.184 33.333 0.00 0.00 38.14 2.85
277 325 1.669604 TGTAGCAAAAACTGACGCCA 58.330 45.000 0.00 0.00 0.00 5.69
356 500 1.476488 AGCAAAACTTGTCGCTGGTTT 59.524 42.857 0.00 0.00 35.11 3.27
367 511 1.727467 GCTGGTTTCAACACGCTGT 59.273 52.632 0.00 0.00 0.00 4.40
372 516 0.648441 GTTTCAACACGCTGTGACGA 59.352 50.000 14.18 7.79 36.96 4.20
379 523 0.729478 CACGCTGTGACGATCGTTCT 60.729 55.000 23.63 0.00 35.23 3.01
409 553 2.052690 ACCGTGGTCATAGCTCGCT 61.053 57.895 0.00 0.00 32.15 4.93
475 621 3.104568 TTTCCCCACCCCCACGTT 61.105 61.111 0.00 0.00 0.00 3.99
498 645 4.680237 TTCGCGAGCAGTGGTGGG 62.680 66.667 9.59 1.06 0.00 4.61
502 678 2.731571 GCGAGCAGTGGTGGGGATA 61.732 63.158 0.00 0.00 0.00 2.59
534 710 1.296392 CAGTCGTGATGGGCCAAGA 59.704 57.895 11.89 5.19 0.00 3.02
554 730 3.000819 ACGTGATGGGCCGAGGAA 61.001 61.111 0.00 0.00 0.00 3.36
590 766 0.818296 AAATCCTGGACCGAGAGACG 59.182 55.000 0.00 0.00 42.18 4.18
595 771 0.387367 CTGGACCGAGAGACGTGTTG 60.387 60.000 0.00 0.00 40.78 3.33
607 783 3.909430 AGACGTGTTGGCGGTATATATG 58.091 45.455 0.00 0.00 35.98 1.78
608 784 2.991190 GACGTGTTGGCGGTATATATGG 59.009 50.000 0.00 0.00 35.98 2.74
609 785 1.730064 CGTGTTGGCGGTATATATGGC 59.270 52.381 0.00 5.01 0.00 4.40
610 786 2.611971 CGTGTTGGCGGTATATATGGCT 60.612 50.000 11.18 0.00 0.00 4.75
611 787 2.742053 GTGTTGGCGGTATATATGGCTG 59.258 50.000 11.18 0.00 0.00 4.85
612 788 1.737793 GTTGGCGGTATATATGGCTGC 59.262 52.381 12.03 12.03 0.00 5.25
613 789 0.108377 TGGCGGTATATATGGCTGCG 60.108 55.000 13.33 0.00 35.51 5.18
614 790 0.108329 GGCGGTATATATGGCTGCGT 60.108 55.000 13.33 0.00 35.51 5.24
615 791 0.999406 GCGGTATATATGGCTGCGTG 59.001 55.000 0.00 0.00 0.00 5.34
616 792 1.403647 GCGGTATATATGGCTGCGTGA 60.404 52.381 0.00 0.00 0.00 4.35
617 793 2.738643 GCGGTATATATGGCTGCGTGAT 60.739 50.000 0.00 0.00 0.00 3.06
618 794 3.116300 CGGTATATATGGCTGCGTGATC 58.884 50.000 0.00 0.00 0.00 2.92
619 795 3.116300 GGTATATATGGCTGCGTGATCG 58.884 50.000 0.00 0.00 40.37 3.69
620 796 3.181490 GGTATATATGGCTGCGTGATCGA 60.181 47.826 0.00 0.00 39.71 3.59
621 797 3.808466 ATATATGGCTGCGTGATCGAT 57.192 42.857 0.00 0.00 39.71 3.59
622 798 2.001812 ATATGGCTGCGTGATCGATC 57.998 50.000 18.72 18.72 39.71 3.69
623 799 0.038251 TATGGCTGCGTGATCGATCC 60.038 55.000 22.31 12.54 39.71 3.36
624 800 3.032609 GGCTGCGTGATCGATCCG 61.033 66.667 22.31 23.00 39.71 4.18
625 801 3.032609 GCTGCGTGATCGATCCGG 61.033 66.667 26.56 18.51 39.71 5.14
626 802 2.721859 CTGCGTGATCGATCCGGA 59.278 61.111 26.56 24.31 39.71 5.14
627 803 1.371022 CTGCGTGATCGATCCGGAG 60.371 63.158 28.60 28.60 39.71 4.63
628 804 1.786049 CTGCGTGATCGATCCGGAGA 61.786 60.000 33.18 13.30 39.40 3.71
629 805 1.370657 GCGTGATCGATCCGGAGAC 60.371 63.158 26.56 16.63 39.71 3.36
658 834 3.660111 GGTCTGCCCGCACACAAC 61.660 66.667 0.00 0.00 0.00 3.32
659 835 4.012895 GTCTGCCCGCACACAACG 62.013 66.667 0.00 0.00 0.00 4.10
660 836 4.539083 TCTGCCCGCACACAACGT 62.539 61.111 0.00 0.00 0.00 3.99
661 837 3.582120 CTGCCCGCACACAACGTT 61.582 61.111 0.00 0.00 0.00 3.99
662 838 3.119709 CTGCCCGCACACAACGTTT 62.120 57.895 0.00 0.00 0.00 3.60
663 839 2.353030 GCCCGCACACAACGTTTC 60.353 61.111 0.00 0.00 0.00 2.78
664 840 2.830285 GCCCGCACACAACGTTTCT 61.830 57.895 0.00 0.00 0.00 2.52
665 841 1.278637 CCCGCACACAACGTTTCTC 59.721 57.895 0.00 0.00 0.00 2.87
666 842 1.157870 CCCGCACACAACGTTTCTCT 61.158 55.000 0.00 0.00 0.00 3.10
667 843 0.655733 CCGCACACAACGTTTCTCTT 59.344 50.000 0.00 0.00 0.00 2.85
668 844 1.332904 CCGCACACAACGTTTCTCTTC 60.333 52.381 0.00 0.00 0.00 2.87
669 845 1.593006 CGCACACAACGTTTCTCTTCT 59.407 47.619 0.00 0.00 0.00 2.85
670 846 2.030457 CGCACACAACGTTTCTCTTCTT 59.970 45.455 0.00 0.00 0.00 2.52
671 847 3.485216 CGCACACAACGTTTCTCTTCTTT 60.485 43.478 0.00 0.00 0.00 2.52
672 848 4.412207 GCACACAACGTTTCTCTTCTTTT 58.588 39.130 0.00 0.00 0.00 2.27
673 849 4.857037 GCACACAACGTTTCTCTTCTTTTT 59.143 37.500 0.00 0.00 0.00 1.94
674 850 6.025280 GCACACAACGTTTCTCTTCTTTTTA 58.975 36.000 0.00 0.00 0.00 1.52
675 851 6.691388 GCACACAACGTTTCTCTTCTTTTTAT 59.309 34.615 0.00 0.00 0.00 1.40
676 852 7.220108 GCACACAACGTTTCTCTTCTTTTTATT 59.780 33.333 0.00 0.00 0.00 1.40
677 853 8.523464 CACACAACGTTTCTCTTCTTTTTATTG 58.477 33.333 0.00 0.00 0.00 1.90
678 854 8.455682 ACACAACGTTTCTCTTCTTTTTATTGA 58.544 29.630 0.00 0.00 0.00 2.57
679 855 8.947940 CACAACGTTTCTCTTCTTTTTATTGAG 58.052 33.333 0.00 0.00 0.00 3.02
680 856 8.129211 ACAACGTTTCTCTTCTTTTTATTGAGG 58.871 33.333 0.00 0.00 0.00 3.86
681 857 8.342634 CAACGTTTCTCTTCTTTTTATTGAGGA 58.657 33.333 0.00 0.00 0.00 3.71
682 858 8.446599 ACGTTTCTCTTCTTTTTATTGAGGAA 57.553 30.769 0.00 0.00 0.00 3.36
683 859 8.899771 ACGTTTCTCTTCTTTTTATTGAGGAAA 58.100 29.630 0.00 0.00 0.00 3.13
684 860 9.730420 CGTTTCTCTTCTTTTTATTGAGGAAAA 57.270 29.630 0.00 0.00 0.00 2.29
702 878 3.694043 AAAAAGCAGTCCCTCTCTCTC 57.306 47.619 0.00 0.00 0.00 3.20
703 879 2.621556 AAAGCAGTCCCTCTCTCTCT 57.378 50.000 0.00 0.00 0.00 3.10
704 880 2.143876 AAGCAGTCCCTCTCTCTCTC 57.856 55.000 0.00 0.00 0.00 3.20
705 881 1.298953 AGCAGTCCCTCTCTCTCTCT 58.701 55.000 0.00 0.00 0.00 3.10
706 882 1.212935 AGCAGTCCCTCTCTCTCTCTC 59.787 57.143 0.00 0.00 0.00 3.20
707 883 1.064758 GCAGTCCCTCTCTCTCTCTCA 60.065 57.143 0.00 0.00 0.00 3.27
708 884 2.923121 CAGTCCCTCTCTCTCTCTCAG 58.077 57.143 0.00 0.00 0.00 3.35
709 885 2.505407 CAGTCCCTCTCTCTCTCTCAGA 59.495 54.545 0.00 0.00 0.00 3.27
710 886 3.054434 CAGTCCCTCTCTCTCTCTCAGAA 60.054 52.174 0.00 0.00 0.00 3.02
711 887 3.591527 AGTCCCTCTCTCTCTCTCAGAAA 59.408 47.826 0.00 0.00 0.00 2.52
712 888 4.044065 AGTCCCTCTCTCTCTCTCAGAAAA 59.956 45.833 0.00 0.00 0.00 2.29
713 889 4.770010 GTCCCTCTCTCTCTCTCAGAAAAA 59.230 45.833 0.00 0.00 0.00 1.94
744 920 5.886960 AAAGAAGTCCAGATTTGAATCGG 57.113 39.130 7.72 7.72 40.35 4.18
745 921 4.826274 AGAAGTCCAGATTTGAATCGGA 57.174 40.909 5.59 8.63 40.35 4.55
746 922 5.165961 AGAAGTCCAGATTTGAATCGGAA 57.834 39.130 14.42 0.00 38.69 4.30
747 923 5.749462 AGAAGTCCAGATTTGAATCGGAAT 58.251 37.500 14.42 12.13 38.69 3.01
748 924 5.819901 AGAAGTCCAGATTTGAATCGGAATC 59.180 40.000 14.42 14.62 38.69 2.52
749 925 5.102953 AGTCCAGATTTGAATCGGAATCA 57.897 39.130 14.42 0.00 38.69 2.57
750 926 5.121811 AGTCCAGATTTGAATCGGAATCAG 58.878 41.667 14.42 4.20 38.69 2.90
751 927 5.104776 AGTCCAGATTTGAATCGGAATCAGA 60.105 40.000 14.42 0.00 38.69 3.27
752 928 5.236047 GTCCAGATTTGAATCGGAATCAGAG 59.764 44.000 14.42 2.62 38.69 3.35
753 929 5.104776 TCCAGATTTGAATCGGAATCAGAGT 60.105 40.000 11.94 0.00 40.35 3.24
754 930 5.587844 CCAGATTTGAATCGGAATCAGAGTT 59.412 40.000 10.39 0.00 40.35 3.01
755 931 6.457934 CCAGATTTGAATCGGAATCAGAGTTG 60.458 42.308 10.39 0.00 40.35 3.16
756 932 5.587844 AGATTTGAATCGGAATCAGAGTTGG 59.412 40.000 10.39 0.00 40.35 3.77
757 933 4.551702 TTGAATCGGAATCAGAGTTGGA 57.448 40.909 0.00 0.00 0.00 3.53
758 934 4.760530 TGAATCGGAATCAGAGTTGGAT 57.239 40.909 0.00 0.00 0.00 3.41
759 935 4.697514 TGAATCGGAATCAGAGTTGGATC 58.302 43.478 0.00 0.00 0.00 3.36
760 936 4.162131 TGAATCGGAATCAGAGTTGGATCA 59.838 41.667 0.00 0.00 0.00 2.92
761 937 3.808466 TCGGAATCAGAGTTGGATCAG 57.192 47.619 0.00 0.00 0.00 2.90
762 938 2.432146 TCGGAATCAGAGTTGGATCAGG 59.568 50.000 0.00 0.00 0.00 3.86
763 939 2.570135 GGAATCAGAGTTGGATCAGGC 58.430 52.381 0.00 0.00 0.00 4.85
764 940 2.570135 GAATCAGAGTTGGATCAGGCC 58.430 52.381 0.00 0.00 0.00 5.19
765 941 1.588239 ATCAGAGTTGGATCAGGCCA 58.412 50.000 5.01 0.00 35.78 5.36
766 942 0.615331 TCAGAGTTGGATCAGGCCAC 59.385 55.000 5.01 0.00 37.75 5.01
767 943 0.325933 CAGAGTTGGATCAGGCCACA 59.674 55.000 5.01 0.00 37.75 4.17
768 944 0.326264 AGAGTTGGATCAGGCCACAC 59.674 55.000 5.01 0.00 37.75 3.82
769 945 0.036732 GAGTTGGATCAGGCCACACA 59.963 55.000 5.01 0.00 37.75 3.72
770 946 0.037303 AGTTGGATCAGGCCACACAG 59.963 55.000 5.01 0.00 37.75 3.66
771 947 0.250901 GTTGGATCAGGCCACACAGT 60.251 55.000 5.01 0.00 37.75 3.55
772 948 0.478072 TTGGATCAGGCCACACAGTT 59.522 50.000 5.01 0.00 37.75 3.16
773 949 0.478072 TGGATCAGGCCACACAGTTT 59.522 50.000 5.01 0.00 31.66 2.66
774 950 0.883833 GGATCAGGCCACACAGTTTG 59.116 55.000 5.01 0.00 0.00 2.93
775 951 0.242017 GATCAGGCCACACAGTTTGC 59.758 55.000 5.01 0.00 0.00 3.68
776 952 1.518056 ATCAGGCCACACAGTTTGCG 61.518 55.000 5.01 0.00 0.00 4.85
777 953 2.124320 AGGCCACACAGTTTGCGT 60.124 55.556 5.01 0.00 0.00 5.24
778 954 2.186826 AGGCCACACAGTTTGCGTC 61.187 57.895 5.01 0.00 0.00 5.19
779 955 2.052237 GCCACACAGTTTGCGTCG 60.052 61.111 0.00 0.00 0.00 5.12
780 956 2.052237 CCACACAGTTTGCGTCGC 60.052 61.111 11.10 11.10 0.00 5.19
781 957 2.052237 CACACAGTTTGCGTCGCC 60.052 61.111 15.88 0.00 0.00 5.54
782 958 3.276846 ACACAGTTTGCGTCGCCC 61.277 61.111 15.88 2.48 0.00 6.13
783 959 2.972505 CACAGTTTGCGTCGCCCT 60.973 61.111 15.88 5.02 0.00 5.19
784 960 2.203153 ACAGTTTGCGTCGCCCTT 60.203 55.556 15.88 0.00 0.00 3.95
785 961 1.070105 ACAGTTTGCGTCGCCCTTA 59.930 52.632 15.88 0.00 0.00 2.69
786 962 0.321298 ACAGTTTGCGTCGCCCTTAT 60.321 50.000 15.88 0.00 0.00 1.73
787 963 1.066716 ACAGTTTGCGTCGCCCTTATA 60.067 47.619 15.88 0.00 0.00 0.98
788 964 2.210116 CAGTTTGCGTCGCCCTTATAT 58.790 47.619 15.88 0.00 0.00 0.86
789 965 3.181473 ACAGTTTGCGTCGCCCTTATATA 60.181 43.478 15.88 0.00 0.00 0.86
790 966 3.805422 CAGTTTGCGTCGCCCTTATATAA 59.195 43.478 15.88 0.00 0.00 0.98
791 967 4.056050 AGTTTGCGTCGCCCTTATATAAG 58.944 43.478 15.88 14.56 0.00 1.73
792 968 3.738830 TTGCGTCGCCCTTATATAAGT 57.261 42.857 15.88 0.00 0.00 2.24
793 969 3.293311 TGCGTCGCCCTTATATAAGTC 57.707 47.619 15.88 10.59 0.00 3.01
794 970 2.889045 TGCGTCGCCCTTATATAAGTCT 59.111 45.455 15.88 0.00 0.00 3.24
795 971 4.074259 TGCGTCGCCCTTATATAAGTCTA 58.926 43.478 15.88 2.89 0.00 2.59
796 972 4.703575 TGCGTCGCCCTTATATAAGTCTAT 59.296 41.667 15.88 0.00 0.00 1.98
830 1280 7.137426 GCTGTGGATATTTCTCTATTTGCTTG 58.863 38.462 0.00 0.00 0.00 4.01
853 1306 1.115467 CTAGTGCACGGGATCCTCTT 58.885 55.000 12.58 0.00 0.00 2.85
874 1327 6.119536 TCTTATAGTTGGGAAACGCATCATT 58.880 36.000 0.00 0.00 0.00 2.57
876 1329 2.238521 AGTTGGGAAACGCATCATTGT 58.761 42.857 0.00 0.00 0.00 2.71
902 1355 0.173255 CCGCCCAAAAAGCAGGTATG 59.827 55.000 0.00 0.00 0.00 2.39
935 1388 4.968259 TCTCTAGTTTGCTGCACCTTTAA 58.032 39.130 0.00 0.00 0.00 1.52
995 1448 4.778534 TCGTTTCTCGTTAATCAGGTCT 57.221 40.909 0.00 0.00 40.80 3.85
1107 1560 3.134574 TGATGCCGTAACTTTTCACCT 57.865 42.857 0.00 0.00 0.00 4.00
1188 1642 3.430098 GGCATATCTAGATCTCCCGCAAG 60.430 52.174 8.95 0.00 0.00 4.01
1193 1649 5.559148 ATCTAGATCTCCCGCAAGAAAAT 57.441 39.130 0.00 0.00 43.02 1.82
1194 1650 4.697514 TCTAGATCTCCCGCAAGAAAATG 58.302 43.478 0.00 0.00 43.02 2.32
1195 1651 3.634397 AGATCTCCCGCAAGAAAATGA 57.366 42.857 0.00 0.00 43.02 2.57
1204 1660 5.991606 TCCCGCAAGAAAATGACATATCTAG 59.008 40.000 4.57 0.00 43.02 2.43
1212 2640 6.939163 AGAAAATGACATATCTAGATGTGCCC 59.061 38.462 24.68 18.05 40.18 5.36
1279 2707 5.952064 GCACGTATGAATCTTCACGTAAAAG 59.048 40.000 7.86 3.98 37.67 2.27
1297 2725 9.325198 ACGTAAAAGCAATGATATGAGACATAA 57.675 29.630 0.00 0.00 0.00 1.90
1325 2753 1.802553 TACTTAGGGGCTTAGGGCAG 58.197 55.000 0.00 0.00 44.01 4.85
1329 2757 3.185455 CTTAGGGGCTTAGGGCAGATAT 58.815 50.000 0.00 0.00 44.01 1.63
1354 2782 4.162096 TGCGTTGTTGTTACAGTTTTGT 57.838 36.364 0.00 0.00 41.39 2.83
1363 2791 6.305877 TGTTGTTACAGTTTTGTTAAAGCACG 59.694 34.615 0.00 0.00 38.76 5.34
1375 2803 5.294356 TGTTAAAGCACGTCTAGATGTGTT 58.706 37.500 34.51 29.65 46.99 3.32
1429 2857 5.521735 ACTGATCTTACGATGAGATTTGCAC 59.478 40.000 2.70 0.00 34.88 4.57
1432 2860 2.951457 TACGATGAGATTTGCACGGA 57.049 45.000 0.00 0.00 0.00 4.69
1436 2864 4.380531 ACGATGAGATTTGCACGGATATT 58.619 39.130 0.00 0.00 0.00 1.28
1500 2929 1.485124 ATGACTAGGGCACATCGACA 58.515 50.000 0.00 0.00 0.00 4.35
1507 2936 3.845781 AGGGCACATCGACAGATAATT 57.154 42.857 0.00 0.00 34.85 1.40
1773 3327 8.396390 TCAGTGTAAGTTATCACGAAGTCTATC 58.604 37.037 0.00 0.00 41.61 2.08
1870 3424 8.470805 TCTTAACTTTTGGTATTCACTTTTGCA 58.529 29.630 0.00 0.00 0.00 4.08
2019 3577 6.765036 AGATGCCATCTATACTTGTGTTTCTG 59.235 38.462 5.13 0.00 38.00 3.02
2078 3637 3.330701 AGCATGGTTTCACCTCCTTTAGA 59.669 43.478 0.00 0.00 39.58 2.10
2256 3816 0.599991 TGAAATGTCTGCTCGCGTGT 60.600 50.000 5.77 0.00 0.00 4.49
2277 3837 0.320374 TCTAAGGTTGGCACTGGACG 59.680 55.000 0.00 0.00 0.00 4.79
2299 3859 4.095632 CGAGTACTCTGATCTCAAGAGCAA 59.904 45.833 20.34 0.00 40.20 3.91
2303 3863 3.837146 ACTCTGATCTCAAGAGCAAAGGA 59.163 43.478 8.16 0.00 40.20 3.36
2316 3876 2.446435 GCAAAGGAATGCTTAGGTGGA 58.554 47.619 0.00 0.00 43.06 4.02
2558 4118 5.527214 CCTGGACGCATACAATAATTCTCAA 59.473 40.000 0.00 0.00 0.00 3.02
2581 4141 1.214589 CTACCGCCTACAGCAACGT 59.785 57.895 0.00 0.00 44.04 3.99
2688 4248 4.715534 TGAAATATCCGGAAAGGCCATA 57.284 40.909 9.01 0.00 40.77 2.74
2699 4260 7.335627 TCCGGAAAGGCCATAAATAGTATATG 58.664 38.462 5.01 0.00 40.77 1.78
2700 4261 7.037873 TCCGGAAAGGCCATAAATAGTATATGT 60.038 37.037 5.01 0.00 40.77 2.29
2701 4262 7.280205 CCGGAAAGGCCATAAATAGTATATGTC 59.720 40.741 5.01 0.00 35.94 3.06
2702 4263 7.010183 CGGAAAGGCCATAAATAGTATATGTCG 59.990 40.741 5.01 0.00 35.94 4.35
2703 4264 7.201617 GGAAAGGCCATAAATAGTATATGTCGC 60.202 40.741 5.01 0.00 36.34 5.19
2704 4265 6.546428 AGGCCATAAATAGTATATGTCGCT 57.454 37.500 5.01 0.00 0.00 4.93
2705 4266 6.947464 AGGCCATAAATAGTATATGTCGCTT 58.053 36.000 5.01 0.00 0.00 4.68
2706 4267 7.042335 AGGCCATAAATAGTATATGTCGCTTC 58.958 38.462 5.01 0.00 0.00 3.86
2707 4268 6.019801 GGCCATAAATAGTATATGTCGCTTCG 60.020 42.308 0.00 0.00 0.00 3.79
2708 4269 6.019801 GCCATAAATAGTATATGTCGCTTCGG 60.020 42.308 0.00 0.00 0.00 4.30
2709 4270 7.033791 CCATAAATAGTATATGTCGCTTCGGT 58.966 38.462 0.00 0.00 0.00 4.69
2710 4271 7.009265 CCATAAATAGTATATGTCGCTTCGGTG 59.991 40.741 0.00 0.00 0.00 4.94
2711 4272 2.135664 AGTATATGTCGCTTCGGTGC 57.864 50.000 0.00 0.00 0.00 5.01
2712 4273 1.681793 AGTATATGTCGCTTCGGTGCT 59.318 47.619 0.00 0.00 0.00 4.40
2713 4274 2.100916 AGTATATGTCGCTTCGGTGCTT 59.899 45.455 0.00 0.00 0.00 3.91
2714 4275 1.290203 ATATGTCGCTTCGGTGCTTG 58.710 50.000 0.00 0.00 0.00 4.01
2715 4276 0.037697 TATGTCGCTTCGGTGCTTGT 60.038 50.000 0.00 0.00 0.00 3.16
2716 4277 0.037697 ATGTCGCTTCGGTGCTTGTA 60.038 50.000 0.00 0.00 0.00 2.41
2717 4278 0.666274 TGTCGCTTCGGTGCTTGTAG 60.666 55.000 0.00 0.00 0.00 2.74
2718 4279 0.666577 GTCGCTTCGGTGCTTGTAGT 60.667 55.000 0.00 0.00 0.00 2.73
2719 4280 0.388134 TCGCTTCGGTGCTTGTAGTC 60.388 55.000 0.00 0.00 0.00 2.59
2720 4281 1.674611 CGCTTCGGTGCTTGTAGTCG 61.675 60.000 0.00 0.00 0.00 4.18
2721 4282 0.666577 GCTTCGGTGCTTGTAGTCGT 60.667 55.000 0.00 0.00 0.00 4.34
2722 4283 1.779569 CTTCGGTGCTTGTAGTCGTT 58.220 50.000 0.00 0.00 0.00 3.85
2723 4284 1.455786 CTTCGGTGCTTGTAGTCGTTG 59.544 52.381 0.00 0.00 0.00 4.10
2724 4285 0.942410 TCGGTGCTTGTAGTCGTTGC 60.942 55.000 0.00 0.00 0.00 4.17
2725 4286 0.944311 CGGTGCTTGTAGTCGTTGCT 60.944 55.000 0.00 0.00 0.00 3.91
2726 4287 1.667756 CGGTGCTTGTAGTCGTTGCTA 60.668 52.381 0.00 0.00 0.00 3.49
2727 4288 1.993370 GGTGCTTGTAGTCGTTGCTAG 59.007 52.381 0.00 0.00 0.00 3.42
2728 4289 1.993370 GTGCTTGTAGTCGTTGCTAGG 59.007 52.381 0.00 0.00 0.00 3.02
2729 4290 1.616865 TGCTTGTAGTCGTTGCTAGGT 59.383 47.619 0.00 0.00 0.00 3.08
2730 4291 2.821378 TGCTTGTAGTCGTTGCTAGGTA 59.179 45.455 0.00 0.00 0.00 3.08
2731 4292 3.256383 TGCTTGTAGTCGTTGCTAGGTAA 59.744 43.478 0.00 0.00 0.00 2.85
2732 4293 4.081862 TGCTTGTAGTCGTTGCTAGGTAAT 60.082 41.667 0.00 0.00 0.00 1.89
2733 4294 4.868734 GCTTGTAGTCGTTGCTAGGTAATT 59.131 41.667 0.00 0.00 0.00 1.40
2734 4295 5.350640 GCTTGTAGTCGTTGCTAGGTAATTT 59.649 40.000 0.00 0.00 0.00 1.82
2735 4296 6.532657 GCTTGTAGTCGTTGCTAGGTAATTTA 59.467 38.462 0.00 0.00 0.00 1.40
2736 4297 7.463780 GCTTGTAGTCGTTGCTAGGTAATTTAC 60.464 40.741 0.00 0.00 0.00 2.01
2737 4298 6.029607 TGTAGTCGTTGCTAGGTAATTTACG 58.970 40.000 0.64 0.00 0.00 3.18
2738 4299 5.314923 AGTCGTTGCTAGGTAATTTACGA 57.685 39.130 0.00 0.00 34.61 3.43
2739 4300 5.713025 AGTCGTTGCTAGGTAATTTACGAA 58.287 37.500 0.00 0.00 38.13 3.85
2740 4301 6.335777 AGTCGTTGCTAGGTAATTTACGAAT 58.664 36.000 0.00 0.00 38.13 3.34
2741 4302 6.474751 AGTCGTTGCTAGGTAATTTACGAATC 59.525 38.462 0.00 0.00 38.13 2.52
2742 4303 6.474751 GTCGTTGCTAGGTAATTTACGAATCT 59.525 38.462 0.00 0.00 38.13 2.40
2743 4304 6.474427 TCGTTGCTAGGTAATTTACGAATCTG 59.526 38.462 0.00 0.00 34.14 2.90
2744 4305 6.292168 CGTTGCTAGGTAATTTACGAATCTGG 60.292 42.308 0.00 0.00 0.00 3.86
2745 4306 6.474140 TGCTAGGTAATTTACGAATCTGGA 57.526 37.500 0.00 0.00 0.00 3.86
2746 4307 7.062749 TGCTAGGTAATTTACGAATCTGGAT 57.937 36.000 0.00 0.00 0.00 3.41
2747 4308 6.929049 TGCTAGGTAATTTACGAATCTGGATG 59.071 38.462 0.00 0.00 0.00 3.51
2748 4309 6.929606 GCTAGGTAATTTACGAATCTGGATGT 59.070 38.462 0.00 0.00 0.00 3.06
2749 4310 8.086522 GCTAGGTAATTTACGAATCTGGATGTA 58.913 37.037 0.00 0.00 0.00 2.29
2750 4311 9.976511 CTAGGTAATTTACGAATCTGGATGTAA 57.023 33.333 0.00 0.00 0.00 2.41
2752 4313 9.847224 AGGTAATTTACGAATCTGGATGTAATT 57.153 29.630 0.00 0.00 0.00 1.40
2766 4327 9.308000 TCTGGATGTAATTTTTATTTCTGGTGT 57.692 29.630 0.00 0.00 0.00 4.16
2767 4328 9.927668 CTGGATGTAATTTTTATTTCTGGTGTT 57.072 29.630 0.00 0.00 0.00 3.32
2768 4329 9.921637 TGGATGTAATTTTTATTTCTGGTGTTC 57.078 29.630 0.00 0.00 0.00 3.18
2769 4330 9.072294 GGATGTAATTTTTATTTCTGGTGTTCG 57.928 33.333 0.00 0.00 0.00 3.95
2770 4331 9.620660 GATGTAATTTTTATTTCTGGTGTTCGT 57.379 29.630 0.00 0.00 0.00 3.85
2771 4332 9.974980 ATGTAATTTTTATTTCTGGTGTTCGTT 57.025 25.926 0.00 0.00 0.00 3.85
2772 4333 9.239002 TGTAATTTTTATTTCTGGTGTTCGTTG 57.761 29.630 0.00 0.00 0.00 4.10
2773 4334 9.240159 GTAATTTTTATTTCTGGTGTTCGTTGT 57.760 29.630 0.00 0.00 0.00 3.32
2775 4336 8.791355 ATTTTTATTTCTGGTGTTCGTTGTAC 57.209 30.769 0.00 0.00 0.00 2.90
2776 4337 7.556733 TTTTATTTCTGGTGTTCGTTGTACT 57.443 32.000 0.00 0.00 0.00 2.73
2777 4338 6.533819 TTATTTCTGGTGTTCGTTGTACTG 57.466 37.500 0.00 0.00 0.00 2.74
2778 4339 3.530265 TTCTGGTGTTCGTTGTACTGT 57.470 42.857 0.00 0.00 0.00 3.55
2779 4340 2.816689 TCTGGTGTTCGTTGTACTGTG 58.183 47.619 0.00 0.00 0.00 3.66
2780 4341 2.427812 TCTGGTGTTCGTTGTACTGTGA 59.572 45.455 0.00 0.00 0.00 3.58
2781 4342 3.069016 TCTGGTGTTCGTTGTACTGTGAT 59.931 43.478 0.00 0.00 0.00 3.06
2782 4343 3.127589 TGGTGTTCGTTGTACTGTGATG 58.872 45.455 0.00 0.00 0.00 3.07
2783 4344 3.181474 TGGTGTTCGTTGTACTGTGATGA 60.181 43.478 0.00 0.00 0.00 2.92
2784 4345 3.994392 GGTGTTCGTTGTACTGTGATGAT 59.006 43.478 0.00 0.00 0.00 2.45
2785 4346 4.451096 GGTGTTCGTTGTACTGTGATGATT 59.549 41.667 0.00 0.00 0.00 2.57
2786 4347 5.636121 GGTGTTCGTTGTACTGTGATGATTA 59.364 40.000 0.00 0.00 0.00 1.75
2787 4348 6.146510 GGTGTTCGTTGTACTGTGATGATTAA 59.853 38.462 0.00 0.00 0.00 1.40
2788 4349 7.307514 GGTGTTCGTTGTACTGTGATGATTAAA 60.308 37.037 0.00 0.00 0.00 1.52
2789 4350 7.740346 GTGTTCGTTGTACTGTGATGATTAAAG 59.260 37.037 0.00 0.00 0.00 1.85
2790 4351 7.654116 TGTTCGTTGTACTGTGATGATTAAAGA 59.346 33.333 0.00 0.00 0.00 2.52
2791 4352 8.656849 GTTCGTTGTACTGTGATGATTAAAGAT 58.343 33.333 0.00 0.00 0.00 2.40
2792 4353 8.185003 TCGTTGTACTGTGATGATTAAAGATG 57.815 34.615 0.00 0.00 0.00 2.90
2793 4354 8.032451 TCGTTGTACTGTGATGATTAAAGATGA 58.968 33.333 0.00 0.00 0.00 2.92
2794 4355 8.655970 CGTTGTACTGTGATGATTAAAGATGAA 58.344 33.333 0.00 0.00 0.00 2.57
2813 4374 9.846248 AAGATGAATAGATTGAAAGTTTTTCCG 57.154 29.630 0.00 0.00 0.00 4.30
2814 4375 9.014297 AGATGAATAGATTGAAAGTTTTTCCGT 57.986 29.630 0.00 0.00 0.00 4.69
2864 4433 7.872113 TTTTTGTTCCAGCAACCAAAAATAT 57.128 28.000 0.00 0.00 36.92 1.28
2931 4523 3.187842 GGACCGAGTTCACATGTTTTACC 59.812 47.826 0.00 0.00 0.00 2.85
2966 4558 6.089820 GTGTCTTTGCATAATCCACACAAATG 59.910 38.462 0.00 0.00 34.18 2.32
3175 4770 5.220796 CGGAGCAACCTAAGCCTAATTAAAC 60.221 44.000 0.00 0.00 36.31 2.01
3202 4797 5.510179 CCTCACAGGAAACATTTTTGCTCAT 60.510 40.000 0.00 0.00 41.15 2.90
3231 4826 4.974721 CAAGGGCAGTTGCGGGGT 62.975 66.667 0.00 0.00 43.26 4.95
3248 4856 0.800631 GGTGCAAGGTAAAGGCGTAC 59.199 55.000 0.00 0.00 0.00 3.67
3321 4929 1.609061 CCATCCGCCATCTACCATGAC 60.609 57.143 0.00 0.00 0.00 3.06
3327 4935 1.137086 GCCATCTACCATGACACTCGT 59.863 52.381 0.00 0.00 0.00 4.18
3331 4939 4.098044 CCATCTACCATGACACTCGTAGTT 59.902 45.833 0.00 0.00 31.97 2.24
3338 4946 2.723209 TGACACTCGTAGTTGTTGTCG 58.277 47.619 0.00 0.00 0.00 4.35
3340 4948 3.111098 GACACTCGTAGTTGTTGTCGTT 58.889 45.455 0.00 0.00 0.00 3.85
3351 4959 1.314581 GTTGTCGTTGCGTATGTTGC 58.685 50.000 0.00 0.00 0.00 4.17
3375 4983 2.074576 GGTGATCATCATGCCGATCTG 58.925 52.381 19.01 0.00 39.06 2.90
3393 5001 2.889678 TCTGGATGATCATCTCACCGAG 59.110 50.000 29.85 14.38 36.48 4.63
3435 5048 1.697394 CCCCTCCCCATCCATGACA 60.697 63.158 0.00 0.00 0.00 3.58
3470 5083 5.477291 AGTCAAAGTCGATGAAGTTAGGAGA 59.523 40.000 0.00 0.00 0.00 3.71
3472 5085 4.358494 AAGTCGATGAAGTTAGGAGACG 57.642 45.455 0.00 0.00 32.96 4.18
3511 5136 4.370094 TGTTGCATATATCCTCATGGCA 57.630 40.909 0.00 0.00 0.00 4.92
3531 5260 3.664486 GCACGACAGATATATGACGACAC 59.336 47.826 24.67 11.84 40.06 3.67
3540 5269 1.004785 TATGACGACACGGTGTTGCG 61.005 55.000 24.88 21.02 35.14 4.85
3574 5303 2.352561 TCCACTTGACCTTGGGGATA 57.647 50.000 0.00 0.00 36.25 2.59
3589 5318 3.139077 GGGGATAATGTTCAGGTTAGCG 58.861 50.000 0.00 0.00 0.00 4.26
3591 5320 3.181458 GGGATAATGTTCAGGTTAGCGGA 60.181 47.826 0.00 0.00 0.00 5.54
3592 5321 3.808174 GGATAATGTTCAGGTTAGCGGAC 59.192 47.826 0.00 0.00 0.00 4.79
3593 5322 1.722011 AATGTTCAGGTTAGCGGACG 58.278 50.000 0.00 0.00 0.00 4.79
3594 5323 0.892755 ATGTTCAGGTTAGCGGACGA 59.107 50.000 0.00 0.00 0.00 4.20
3595 5324 0.242825 TGTTCAGGTTAGCGGACGAG 59.757 55.000 0.00 0.00 0.00 4.18
3597 5326 0.524862 TTCAGGTTAGCGGACGAGAC 59.475 55.000 0.00 0.00 0.00 3.36
3598 5327 0.322277 TCAGGTTAGCGGACGAGACT 60.322 55.000 0.00 0.00 0.00 3.24
3599 5328 0.526662 CAGGTTAGCGGACGAGACTT 59.473 55.000 0.00 0.00 0.00 3.01
3600 5329 1.741706 CAGGTTAGCGGACGAGACTTA 59.258 52.381 0.00 0.00 0.00 2.24
3601 5330 2.015587 AGGTTAGCGGACGAGACTTAG 58.984 52.381 0.00 0.00 0.00 2.18
3602 5331 1.533547 GGTTAGCGGACGAGACTTAGC 60.534 57.143 0.00 0.00 0.00 3.09
3604 5333 1.015109 TAGCGGACGAGACTTAGCTG 58.985 55.000 0.00 0.00 36.30 4.24
3605 5334 1.874466 GCGGACGAGACTTAGCTGC 60.874 63.158 0.00 0.00 0.00 5.25
3606 5335 1.803943 CGGACGAGACTTAGCTGCT 59.196 57.895 7.57 7.57 0.00 4.24
3607 5336 0.248296 CGGACGAGACTTAGCTGCTC 60.248 60.000 4.91 0.00 0.00 4.26
3609 5338 0.101579 GACGAGACTTAGCTGCTCCC 59.898 60.000 4.91 0.00 0.00 4.30
3610 5339 0.323908 ACGAGACTTAGCTGCTCCCT 60.324 55.000 4.91 0.00 0.00 4.20
3611 5340 0.383949 CGAGACTTAGCTGCTCCCTC 59.616 60.000 4.91 7.82 0.00 4.30
3612 5341 1.479709 GAGACTTAGCTGCTCCCTCA 58.520 55.000 4.91 0.00 0.00 3.86
3613 5342 1.408702 GAGACTTAGCTGCTCCCTCAG 59.591 57.143 4.91 0.00 37.15 3.35
3624 5353 4.889112 CCCTCAGCATGCGCCCAT 62.889 66.667 13.01 0.00 39.83 4.00
3625 5354 3.285215 CCTCAGCATGCGCCCATC 61.285 66.667 13.01 0.00 39.83 3.51
3627 5356 4.112433 TCAGCATGCGCCCATCCA 62.112 61.111 13.01 0.00 39.83 3.41
3628 5357 2.910479 CAGCATGCGCCCATCCAT 60.910 61.111 13.01 0.00 39.83 3.41
3631 5841 2.910479 CATGCGCCCATCCATGCT 60.910 61.111 4.18 0.00 33.27 3.79
3645 5855 2.203195 TGCTCCCGCATATGTGGC 60.203 61.111 26.98 17.22 44.11 5.01
3649 5859 0.250424 CTCCCGCATATGTGGCATGA 60.250 55.000 26.98 18.25 44.11 3.07
3650 5860 0.401356 TCCCGCATATGTGGCATGAT 59.599 50.000 26.98 0.00 44.11 2.45
3653 5863 2.608506 CCCGCATATGTGGCATGATTTG 60.609 50.000 26.98 9.28 44.11 2.32
3654 5864 2.293955 CCGCATATGTGGCATGATTTGA 59.706 45.455 21.89 0.00 39.04 2.69
3655 5865 3.057104 CCGCATATGTGGCATGATTTGAT 60.057 43.478 21.89 0.00 39.04 2.57
3656 5866 4.552355 CGCATATGTGGCATGATTTGATT 58.448 39.130 8.46 0.00 0.00 2.57
3661 5871 7.327761 GCATATGTGGCATGATTTGATTAGAAC 59.672 37.037 4.29 0.00 0.00 3.01
3662 5872 6.778834 ATGTGGCATGATTTGATTAGAACA 57.221 33.333 0.00 0.00 0.00 3.18
3664 5874 6.990798 TGTGGCATGATTTGATTAGAACAAA 58.009 32.000 0.00 0.00 40.62 2.83
3665 5875 7.440198 TGTGGCATGATTTGATTAGAACAAAA 58.560 30.769 0.00 0.00 39.95 2.44
3666 5876 8.095792 TGTGGCATGATTTGATTAGAACAAAAT 58.904 29.630 0.00 0.00 39.95 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.696172 GTTGCCGTCGTTCGTGCG 62.696 66.667 0.00 0.00 38.10 5.34
49 50 8.641499 ATGTTTTTGACACATTCATTAAACGT 57.359 26.923 0.00 0.00 42.04 3.99
114 116 2.032634 GGACGACAGCAATGGCGAA 61.033 57.895 10.95 0.00 44.30 4.70
175 179 6.112927 TCATTGGTTTTTACTACTACCGGT 57.887 37.500 13.98 13.98 33.29 5.28
199 203 2.288213 ACGACGACTTCTTCTGCAATCA 60.288 45.455 0.00 0.00 0.00 2.57
201 205 2.329379 GACGACGACTTCTTCTGCAAT 58.671 47.619 0.00 0.00 0.00 3.56
277 325 3.967332 ATATGGCTTTTTGCTGCAACT 57.033 38.095 15.72 0.00 42.39 3.16
296 344 2.030185 GCTACGATCCACGATGGTGTAT 60.030 50.000 7.12 0.00 45.77 2.29
356 500 1.001745 CGATCGTCACAGCGTGTTGA 61.002 55.000 7.03 7.84 34.79 3.18
367 511 1.840181 GCATGCTAGAACGATCGTCA 58.160 50.000 22.98 15.02 0.00 4.35
372 516 1.595382 GGCCGCATGCTAGAACGAT 60.595 57.895 17.13 0.00 40.92 3.73
394 538 0.807667 CACCAGCGAGCTATGACCAC 60.808 60.000 0.00 0.00 0.00 4.16
409 553 0.964860 CATCCACGGAATTGCCACCA 60.965 55.000 0.00 0.00 35.94 4.17
509 685 1.401539 GCCCATCACGACTGCTTTTTC 60.402 52.381 0.00 0.00 0.00 2.29
534 710 4.457496 CTCGGCCCATCACGTGCT 62.457 66.667 11.67 0.00 0.00 4.40
576 752 0.387367 CAACACGTCTCTCGGTCCAG 60.387 60.000 0.00 0.00 44.69 3.86
581 757 2.805353 CGCCAACACGTCTCTCGG 60.805 66.667 0.00 0.00 44.69 4.63
582 758 2.191354 TACCGCCAACACGTCTCTCG 62.191 60.000 0.00 0.00 46.00 4.04
584 760 1.466856 TATACCGCCAACACGTCTCT 58.533 50.000 0.00 0.00 0.00 3.10
590 766 2.742053 CAGCCATATATACCGCCAACAC 59.258 50.000 0.35 0.00 0.00 3.32
595 771 0.108329 ACGCAGCCATATATACCGCC 60.108 55.000 0.00 0.00 0.00 6.13
607 783 3.032609 CGGATCGATCACGCAGCC 61.033 66.667 25.93 7.33 39.58 4.85
608 784 3.032609 CCGGATCGATCACGCAGC 61.033 66.667 25.93 7.33 39.58 5.25
609 785 1.371022 CTCCGGATCGATCACGCAG 60.371 63.158 25.93 17.78 39.58 5.18
610 786 1.822186 TCTCCGGATCGATCACGCA 60.822 57.895 25.93 12.76 39.58 5.24
611 787 1.370657 GTCTCCGGATCGATCACGC 60.371 63.158 25.93 8.75 39.58 5.34
612 788 1.082692 CGTCTCCGGATCGATCACG 60.083 63.158 25.93 23.59 41.26 4.35
613 789 0.236187 CTCGTCTCCGGATCGATCAC 59.764 60.000 25.93 14.16 33.26 3.06
614 790 1.507974 GCTCGTCTCCGGATCGATCA 61.508 60.000 25.93 5.76 33.26 2.92
615 791 1.208103 GCTCGTCTCCGGATCGATC 59.792 63.158 24.70 17.36 33.26 3.69
616 792 0.820074 AAGCTCGTCTCCGGATCGAT 60.820 55.000 24.70 13.35 33.26 3.59
617 793 1.437772 GAAGCTCGTCTCCGGATCGA 61.438 60.000 23.58 23.58 33.95 3.59
618 794 1.009449 GAAGCTCGTCTCCGGATCG 60.009 63.158 18.86 18.86 33.95 3.69
619 795 1.009449 CGAAGCTCGTCTCCGGATC 60.009 63.158 3.57 0.00 34.72 3.36
620 796 2.482333 CCGAAGCTCGTCTCCGGAT 61.482 63.158 3.57 0.00 42.49 4.18
621 797 3.132139 CCGAAGCTCGTCTCCGGA 61.132 66.667 2.93 2.93 42.49 5.14
622 798 4.856607 GCCGAAGCTCGTCTCCGG 62.857 72.222 0.00 0.00 38.40 5.14
623 799 4.856607 GGCCGAAGCTCGTCTCCG 62.857 72.222 0.00 0.00 38.40 4.63
624 800 4.856607 CGGCCGAAGCTCGTCTCC 62.857 72.222 24.07 0.00 38.40 3.71
625 801 4.856607 CCGGCCGAAGCTCGTCTC 62.857 72.222 30.73 0.00 38.40 3.36
641 817 3.660111 GTTGTGTGCGGGCAGACC 61.660 66.667 16.93 0.59 39.16 3.85
642 818 4.012895 CGTTGTGTGCGGGCAGAC 62.013 66.667 13.40 13.40 40.15 3.51
643 819 4.539083 ACGTTGTGTGCGGGCAGA 62.539 61.111 0.00 0.00 0.00 4.26
644 820 2.982038 GAAACGTTGTGTGCGGGCAG 62.982 60.000 0.00 0.00 0.00 4.85
645 821 3.114647 GAAACGTTGTGTGCGGGCA 62.115 57.895 0.00 0.00 0.00 5.36
646 822 2.353030 GAAACGTTGTGTGCGGGC 60.353 61.111 0.00 0.00 0.00 6.13
647 823 1.157870 AGAGAAACGTTGTGTGCGGG 61.158 55.000 0.00 0.00 0.00 6.13
648 824 0.655733 AAGAGAAACGTTGTGTGCGG 59.344 50.000 0.00 0.00 0.00 5.69
649 825 1.593006 AGAAGAGAAACGTTGTGTGCG 59.407 47.619 0.00 0.00 0.00 5.34
650 826 3.675467 AAGAAGAGAAACGTTGTGTGC 57.325 42.857 0.00 0.00 0.00 4.57
651 827 8.523464 CAATAAAAAGAAGAGAAACGTTGTGTG 58.477 33.333 0.00 0.00 0.00 3.82
652 828 8.455682 TCAATAAAAAGAAGAGAAACGTTGTGT 58.544 29.630 0.00 0.00 0.00 3.72
653 829 8.835467 TCAATAAAAAGAAGAGAAACGTTGTG 57.165 30.769 0.00 0.00 0.00 3.33
654 830 8.129211 CCTCAATAAAAAGAAGAGAAACGTTGT 58.871 33.333 0.00 0.00 0.00 3.32
655 831 8.342634 TCCTCAATAAAAAGAAGAGAAACGTTG 58.657 33.333 0.00 0.00 0.00 4.10
656 832 8.446599 TCCTCAATAAAAAGAAGAGAAACGTT 57.553 30.769 0.00 0.00 0.00 3.99
657 833 8.446599 TTCCTCAATAAAAAGAAGAGAAACGT 57.553 30.769 0.00 0.00 0.00 3.99
658 834 9.730420 TTTTCCTCAATAAAAAGAAGAGAAACG 57.270 29.630 0.00 0.00 0.00 3.60
682 858 3.247162 AGAGAGAGAGGGACTGCTTTTT 58.753 45.455 0.00 0.00 41.55 1.94
683 859 2.831526 GAGAGAGAGAGGGACTGCTTTT 59.168 50.000 0.00 0.00 41.55 2.27
684 860 2.042979 AGAGAGAGAGAGGGACTGCTTT 59.957 50.000 0.00 0.00 41.55 3.51
685 861 1.640670 AGAGAGAGAGAGGGACTGCTT 59.359 52.381 0.00 0.00 41.55 3.91
686 862 1.212935 GAGAGAGAGAGAGGGACTGCT 59.787 57.143 0.00 0.00 41.55 4.24
687 863 1.064758 TGAGAGAGAGAGAGGGACTGC 60.065 57.143 0.00 0.00 41.55 4.40
688 864 2.505407 TCTGAGAGAGAGAGAGGGACTG 59.495 54.545 0.00 0.00 41.55 3.51
689 865 3.189606 TTCTGAGAGAGAGAGAGGGACT 58.810 50.000 0.00 0.00 33.78 3.85
690 866 3.644966 TTCTGAGAGAGAGAGAGGGAC 57.355 52.381 0.00 0.00 30.18 4.46
691 867 4.666412 TTTTCTGAGAGAGAGAGAGGGA 57.334 45.455 0.00 0.00 30.18 4.20
720 896 6.490040 TCCGATTCAAATCTGGACTTCTTTTT 59.510 34.615 10.32 0.00 35.07 1.94
721 897 6.003950 TCCGATTCAAATCTGGACTTCTTTT 58.996 36.000 10.32 0.00 35.07 2.27
722 898 5.560724 TCCGATTCAAATCTGGACTTCTTT 58.439 37.500 10.32 0.00 35.07 2.52
723 899 5.165961 TCCGATTCAAATCTGGACTTCTT 57.834 39.130 10.32 0.00 35.07 2.52
724 900 4.826274 TCCGATTCAAATCTGGACTTCT 57.174 40.909 10.32 0.00 35.07 2.85
725 901 5.586243 TGATTCCGATTCAAATCTGGACTTC 59.414 40.000 12.65 12.60 37.62 3.01
726 902 5.500234 TGATTCCGATTCAAATCTGGACTT 58.500 37.500 12.65 6.78 37.62 3.01
727 903 5.102953 TGATTCCGATTCAAATCTGGACT 57.897 39.130 12.65 9.44 37.62 3.85
728 904 5.118990 TCTGATTCCGATTCAAATCTGGAC 58.881 41.667 12.65 6.57 37.62 4.02
729 905 5.104776 ACTCTGATTCCGATTCAAATCTGGA 60.105 40.000 10.32 10.32 36.79 3.86
730 906 5.121811 ACTCTGATTCCGATTCAAATCTGG 58.878 41.667 12.02 4.74 33.87 3.86
731 907 6.457934 CCAACTCTGATTCCGATTCAAATCTG 60.458 42.308 9.11 8.69 33.86 2.90
732 908 5.587844 CCAACTCTGATTCCGATTCAAATCT 59.412 40.000 9.11 0.00 33.86 2.40
733 909 5.586243 TCCAACTCTGATTCCGATTCAAATC 59.414 40.000 0.00 3.09 33.42 2.17
734 910 5.500234 TCCAACTCTGATTCCGATTCAAAT 58.500 37.500 0.00 0.00 0.00 2.32
735 911 4.905429 TCCAACTCTGATTCCGATTCAAA 58.095 39.130 0.00 0.00 0.00 2.69
736 912 4.551702 TCCAACTCTGATTCCGATTCAA 57.448 40.909 0.00 0.00 0.00 2.69
737 913 4.162131 TGATCCAACTCTGATTCCGATTCA 59.838 41.667 0.00 0.00 0.00 2.57
738 914 4.697514 TGATCCAACTCTGATTCCGATTC 58.302 43.478 0.00 0.00 0.00 2.52
739 915 4.444022 CCTGATCCAACTCTGATTCCGATT 60.444 45.833 0.00 0.00 0.00 3.34
740 916 3.070734 CCTGATCCAACTCTGATTCCGAT 59.929 47.826 0.00 0.00 0.00 4.18
741 917 2.432146 CCTGATCCAACTCTGATTCCGA 59.568 50.000 0.00 0.00 0.00 4.55
742 918 2.831333 CCTGATCCAACTCTGATTCCG 58.169 52.381 0.00 0.00 0.00 4.30
743 919 2.570135 GCCTGATCCAACTCTGATTCC 58.430 52.381 0.00 0.00 0.00 3.01
744 920 2.092753 TGGCCTGATCCAACTCTGATTC 60.093 50.000 3.32 0.00 32.18 2.52
745 921 1.918262 TGGCCTGATCCAACTCTGATT 59.082 47.619 3.32 0.00 32.18 2.57
746 922 1.211457 GTGGCCTGATCCAACTCTGAT 59.789 52.381 3.32 0.00 37.96 2.90
747 923 0.615331 GTGGCCTGATCCAACTCTGA 59.385 55.000 3.32 0.00 37.96 3.27
748 924 0.325933 TGTGGCCTGATCCAACTCTG 59.674 55.000 3.32 0.00 37.96 3.35
749 925 0.326264 GTGTGGCCTGATCCAACTCT 59.674 55.000 3.32 0.00 37.96 3.24
750 926 0.036732 TGTGTGGCCTGATCCAACTC 59.963 55.000 3.32 0.00 37.96 3.01
751 927 0.037303 CTGTGTGGCCTGATCCAACT 59.963 55.000 3.32 0.00 37.96 3.16
752 928 0.250901 ACTGTGTGGCCTGATCCAAC 60.251 55.000 3.32 0.00 37.96 3.77
753 929 0.478072 AACTGTGTGGCCTGATCCAA 59.522 50.000 3.32 0.00 37.96 3.53
754 930 0.478072 AAACTGTGTGGCCTGATCCA 59.522 50.000 3.32 0.00 0.00 3.41
755 931 0.883833 CAAACTGTGTGGCCTGATCC 59.116 55.000 3.32 0.00 0.00 3.36
756 932 0.242017 GCAAACTGTGTGGCCTGATC 59.758 55.000 3.32 0.00 0.00 2.92
757 933 1.518056 CGCAAACTGTGTGGCCTGAT 61.518 55.000 3.32 0.00 33.83 2.90
758 934 2.186160 CGCAAACTGTGTGGCCTGA 61.186 57.895 3.32 0.00 33.83 3.86
759 935 2.332514 CGCAAACTGTGTGGCCTG 59.667 61.111 3.32 0.00 33.83 4.85
760 936 2.124320 ACGCAAACTGTGTGGCCT 60.124 55.556 3.32 0.00 39.97 5.19
761 937 2.331451 GACGCAAACTGTGTGGCC 59.669 61.111 0.00 0.00 41.77 5.36
762 938 2.052237 CGACGCAAACTGTGTGGC 60.052 61.111 0.00 0.00 41.77 5.01
763 939 2.052237 GCGACGCAAACTGTGTGG 60.052 61.111 16.42 0.00 41.77 4.17
764 940 2.052237 GGCGACGCAAACTGTGTG 60.052 61.111 23.09 0.00 41.77 3.82
765 941 3.276846 GGGCGACGCAAACTGTGT 61.277 61.111 23.09 0.00 44.78 3.72
766 942 1.225376 TAAGGGCGACGCAAACTGTG 61.225 55.000 23.09 0.00 0.00 3.66
767 943 0.321298 ATAAGGGCGACGCAAACTGT 60.321 50.000 23.09 9.47 0.00 3.55
768 944 1.647346 TATAAGGGCGACGCAAACTG 58.353 50.000 23.09 0.00 0.00 3.16
769 945 2.614829 ATATAAGGGCGACGCAAACT 57.385 45.000 23.09 13.37 0.00 2.66
770 946 3.805971 ACTTATATAAGGGCGACGCAAAC 59.194 43.478 23.09 11.15 37.62 2.93
771 947 4.053295 GACTTATATAAGGGCGACGCAAA 58.947 43.478 23.09 3.55 37.62 3.68
772 948 3.319972 AGACTTATATAAGGGCGACGCAA 59.680 43.478 23.09 3.41 37.62 4.85
773 949 2.889045 AGACTTATATAAGGGCGACGCA 59.111 45.455 23.09 0.12 37.62 5.24
774 950 3.572604 AGACTTATATAAGGGCGACGC 57.427 47.619 23.24 12.43 37.62 5.19
775 951 6.618811 ACAATAGACTTATATAAGGGCGACG 58.381 40.000 23.24 11.73 37.62 5.12
778 954 9.234384 CGATTACAATAGACTTATATAAGGGCG 57.766 37.037 23.24 10.02 37.62 6.13
779 955 9.530633 CCGATTACAATAGACTTATATAAGGGC 57.469 37.037 23.24 15.59 37.62 5.19
780 956 9.530633 GCCGATTACAATAGACTTATATAAGGG 57.469 37.037 23.24 12.35 37.62 3.95
785 961 8.035394 CCACAGCCGATTACAATAGACTTATAT 58.965 37.037 0.00 0.00 0.00 0.86
786 962 7.231925 TCCACAGCCGATTACAATAGACTTATA 59.768 37.037 0.00 0.00 0.00 0.98
787 963 6.041637 TCCACAGCCGATTACAATAGACTTAT 59.958 38.462 0.00 0.00 0.00 1.73
788 964 5.361571 TCCACAGCCGATTACAATAGACTTA 59.638 40.000 0.00 0.00 0.00 2.24
789 965 4.161565 TCCACAGCCGATTACAATAGACTT 59.838 41.667 0.00 0.00 0.00 3.01
790 966 3.704566 TCCACAGCCGATTACAATAGACT 59.295 43.478 0.00 0.00 0.00 3.24
791 967 4.054780 TCCACAGCCGATTACAATAGAC 57.945 45.455 0.00 0.00 0.00 2.59
792 968 4.955811 ATCCACAGCCGATTACAATAGA 57.044 40.909 0.00 0.00 0.00 1.98
793 969 7.604164 AGAAATATCCACAGCCGATTACAATAG 59.396 37.037 0.00 0.00 0.00 1.73
794 970 7.450074 AGAAATATCCACAGCCGATTACAATA 58.550 34.615 0.00 0.00 0.00 1.90
795 971 6.299141 AGAAATATCCACAGCCGATTACAAT 58.701 36.000 0.00 0.00 0.00 2.71
796 972 5.680619 AGAAATATCCACAGCCGATTACAA 58.319 37.500 0.00 0.00 0.00 2.41
853 1306 5.189928 ACAATGATGCGTTTCCCAACTATA 58.810 37.500 0.00 0.00 0.00 1.31
874 1327 2.230266 GCTTTTTGGGCGGAAGAATACA 59.770 45.455 0.00 0.00 0.00 2.29
876 1329 2.491693 CTGCTTTTTGGGCGGAAGAATA 59.508 45.455 0.00 0.00 38.23 1.75
902 1355 6.674278 GCAGCAAACTAGAGAGAAACATAAGC 60.674 42.308 0.00 0.00 0.00 3.09
935 1388 2.093021 ACTTTGGCAGCCAACAATTTGT 60.093 40.909 27.40 14.67 43.82 2.83
995 1448 4.968719 TGTTTCCCTGCTTCTCCATATAGA 59.031 41.667 0.00 0.00 0.00 1.98
1188 1642 6.939163 AGGGCACATCTAGATATGTCATTTTC 59.061 38.462 16.98 0.00 38.01 2.29
1193 1649 7.559335 AATTAGGGCACATCTAGATATGTCA 57.441 36.000 16.98 0.00 38.01 3.58
1255 2683 5.444586 TTTACGTGAAGATTCATACGTGC 57.555 39.130 16.77 0.00 39.31 5.34
1259 2687 8.175069 TCATTGCTTTTACGTGAAGATTCATAC 58.825 33.333 15.18 0.05 39.73 2.39
1297 2725 6.485171 CCTAAGCCCCTAAGTATTGCATATT 58.515 40.000 0.00 0.00 0.00 1.28
1325 2753 7.464830 ACTGTAACAACAACGCATCTATATC 57.535 36.000 0.00 0.00 0.00 1.63
1329 2757 5.994887 AAACTGTAACAACAACGCATCTA 57.005 34.783 0.00 0.00 0.00 1.98
1354 2782 9.297586 CTTATAACACATCTAGACGTGCTTTAA 57.702 33.333 18.42 10.95 36.57 1.52
1363 2791 9.529325 TGTGCAATACTTATAACACATCTAGAC 57.471 33.333 0.00 0.00 33.41 2.59
1500 2929 9.357161 AGATCAAGACGGACTTAGTAATTATCT 57.643 33.333 0.00 0.00 37.03 1.98
1507 2936 6.832384 ACCAATAGATCAAGACGGACTTAGTA 59.168 38.462 0.00 0.00 37.03 1.82
1660 3214 5.121454 GGTGTGCACTTTGAACAATTTTCAA 59.879 36.000 19.41 10.04 36.71 2.69
1763 3317 8.928270 ACCAAAGTTTACATAGATAGACTTCG 57.072 34.615 0.00 0.00 30.42 3.79
1898 3452 1.135527 CGGTCGAGTATGTAAAGGGCA 59.864 52.381 0.00 0.00 0.00 5.36
2005 3563 8.403236 GGAACTAACAAACAGAAACACAAGTAT 58.597 33.333 0.00 0.00 0.00 2.12
2019 3577 5.784578 AGGAACCATTGGAACTAACAAAC 57.215 39.130 10.37 0.00 0.00 2.93
2089 3648 3.365868 GCGCAACAATAACCATGACTTCA 60.366 43.478 0.30 0.00 0.00 3.02
2102 3661 1.074775 TCCTTCCCTGCGCAACAAT 59.925 52.632 13.05 0.00 0.00 2.71
2104 3663 2.281484 GTCCTTCCCTGCGCAACA 60.281 61.111 13.05 0.00 0.00 3.33
2256 3816 1.071699 GTCCAGTGCCAACCTTAGACA 59.928 52.381 0.00 0.00 0.00 3.41
2277 3837 5.574891 TTGCTCTTGAGATCAGAGTACTC 57.425 43.478 15.41 15.41 32.67 2.59
2299 3859 2.621668 GCCTTCCACCTAAGCATTCCTT 60.622 50.000 0.00 0.00 37.57 3.36
2303 3863 2.907458 AAGCCTTCCACCTAAGCATT 57.093 45.000 0.00 0.00 0.00 3.56
2558 4118 3.007635 GTTGCTGTAGGCGGTAGATTTT 58.992 45.455 0.00 0.00 45.43 1.82
2636 4196 4.802039 ACTATCGCACAACCTAATACAACG 59.198 41.667 0.00 0.00 0.00 4.10
2688 4248 4.684703 GCACCGAAGCGACATATACTATTT 59.315 41.667 0.00 0.00 0.00 1.40
2699 4260 0.666577 ACTACAAGCACCGAAGCGAC 60.667 55.000 0.00 0.00 40.15 5.19
2700 4261 0.388134 GACTACAAGCACCGAAGCGA 60.388 55.000 0.00 0.00 40.15 4.93
2701 4262 1.674611 CGACTACAAGCACCGAAGCG 61.675 60.000 0.00 0.00 40.15 4.68
2702 4263 0.666577 ACGACTACAAGCACCGAAGC 60.667 55.000 0.00 0.00 0.00 3.86
2703 4264 1.455786 CAACGACTACAAGCACCGAAG 59.544 52.381 0.00 0.00 0.00 3.79
2704 4265 1.493772 CAACGACTACAAGCACCGAA 58.506 50.000 0.00 0.00 0.00 4.30
2705 4266 0.942410 GCAACGACTACAAGCACCGA 60.942 55.000 0.00 0.00 0.00 4.69
2706 4267 0.944311 AGCAACGACTACAAGCACCG 60.944 55.000 0.00 0.00 0.00 4.94
2707 4268 1.993370 CTAGCAACGACTACAAGCACC 59.007 52.381 0.00 0.00 0.00 5.01
2708 4269 1.993370 CCTAGCAACGACTACAAGCAC 59.007 52.381 0.00 0.00 0.00 4.40
2709 4270 1.616865 ACCTAGCAACGACTACAAGCA 59.383 47.619 0.00 0.00 0.00 3.91
2710 4271 2.365408 ACCTAGCAACGACTACAAGC 57.635 50.000 0.00 0.00 0.00 4.01
2711 4272 6.963049 AAATTACCTAGCAACGACTACAAG 57.037 37.500 0.00 0.00 0.00 3.16
2712 4273 6.527722 CGTAAATTACCTAGCAACGACTACAA 59.472 38.462 0.00 0.00 0.00 2.41
2713 4274 6.029607 CGTAAATTACCTAGCAACGACTACA 58.970 40.000 0.00 0.00 0.00 2.74
2714 4275 6.258160 TCGTAAATTACCTAGCAACGACTAC 58.742 40.000 0.00 0.00 33.44 2.73
2715 4276 6.435430 TCGTAAATTACCTAGCAACGACTA 57.565 37.500 0.00 0.00 33.44 2.59
2716 4277 5.314923 TCGTAAATTACCTAGCAACGACT 57.685 39.130 0.00 0.00 33.44 4.18
2717 4278 6.474751 AGATTCGTAAATTACCTAGCAACGAC 59.525 38.462 0.00 0.00 37.58 4.34
2718 4279 6.474427 CAGATTCGTAAATTACCTAGCAACGA 59.526 38.462 0.00 0.00 36.24 3.85
2719 4280 6.292168 CCAGATTCGTAAATTACCTAGCAACG 60.292 42.308 0.00 0.00 0.00 4.10
2720 4281 6.759827 TCCAGATTCGTAAATTACCTAGCAAC 59.240 38.462 0.00 0.00 0.00 4.17
2721 4282 6.880484 TCCAGATTCGTAAATTACCTAGCAA 58.120 36.000 0.00 0.00 0.00 3.91
2722 4283 6.474140 TCCAGATTCGTAAATTACCTAGCA 57.526 37.500 0.00 0.00 0.00 3.49
2723 4284 6.929606 ACATCCAGATTCGTAAATTACCTAGC 59.070 38.462 0.00 0.00 0.00 3.42
2724 4285 9.976511 TTACATCCAGATTCGTAAATTACCTAG 57.023 33.333 0.00 0.00 0.00 3.02
2726 4287 9.847224 AATTACATCCAGATTCGTAAATTACCT 57.153 29.630 0.00 0.00 0.00 3.08
2740 4301 9.308000 ACACCAGAAATAAAAATTACATCCAGA 57.692 29.630 0.00 0.00 0.00 3.86
2741 4302 9.927668 AACACCAGAAATAAAAATTACATCCAG 57.072 29.630 0.00 0.00 0.00 3.86
2742 4303 9.921637 GAACACCAGAAATAAAAATTACATCCA 57.078 29.630 0.00 0.00 0.00 3.41
2743 4304 9.072294 CGAACACCAGAAATAAAAATTACATCC 57.928 33.333 0.00 0.00 0.00 3.51
2744 4305 9.620660 ACGAACACCAGAAATAAAAATTACATC 57.379 29.630 0.00 0.00 0.00 3.06
2745 4306 9.974980 AACGAACACCAGAAATAAAAATTACAT 57.025 25.926 0.00 0.00 0.00 2.29
2746 4307 9.239002 CAACGAACACCAGAAATAAAAATTACA 57.761 29.630 0.00 0.00 0.00 2.41
2747 4308 9.240159 ACAACGAACACCAGAAATAAAAATTAC 57.760 29.630 0.00 0.00 0.00 1.89
2749 4310 9.240159 GTACAACGAACACCAGAAATAAAAATT 57.760 29.630 0.00 0.00 0.00 1.82
2750 4311 8.626526 AGTACAACGAACACCAGAAATAAAAAT 58.373 29.630 0.00 0.00 0.00 1.82
2751 4312 7.911205 CAGTACAACGAACACCAGAAATAAAAA 59.089 33.333 0.00 0.00 0.00 1.94
2752 4313 7.066043 ACAGTACAACGAACACCAGAAATAAAA 59.934 33.333 0.00 0.00 0.00 1.52
2753 4314 6.539464 ACAGTACAACGAACACCAGAAATAAA 59.461 34.615 0.00 0.00 0.00 1.40
2754 4315 6.018588 CACAGTACAACGAACACCAGAAATAA 60.019 38.462 0.00 0.00 0.00 1.40
2755 4316 5.464057 CACAGTACAACGAACACCAGAAATA 59.536 40.000 0.00 0.00 0.00 1.40
2756 4317 4.272504 CACAGTACAACGAACACCAGAAAT 59.727 41.667 0.00 0.00 0.00 2.17
2757 4318 3.619483 CACAGTACAACGAACACCAGAAA 59.381 43.478 0.00 0.00 0.00 2.52
2758 4319 3.119065 TCACAGTACAACGAACACCAGAA 60.119 43.478 0.00 0.00 0.00 3.02
2759 4320 2.427812 TCACAGTACAACGAACACCAGA 59.572 45.455 0.00 0.00 0.00 3.86
2760 4321 2.816689 TCACAGTACAACGAACACCAG 58.183 47.619 0.00 0.00 0.00 4.00
2761 4322 2.963548 TCACAGTACAACGAACACCA 57.036 45.000 0.00 0.00 0.00 4.17
2762 4323 3.386486 TCATCACAGTACAACGAACACC 58.614 45.455 0.00 0.00 0.00 4.16
2763 4324 5.591643 AATCATCACAGTACAACGAACAC 57.408 39.130 0.00 0.00 0.00 3.32
2764 4325 7.654116 TCTTTAATCATCACAGTACAACGAACA 59.346 33.333 0.00 0.00 0.00 3.18
2765 4326 8.014322 TCTTTAATCATCACAGTACAACGAAC 57.986 34.615 0.00 0.00 0.00 3.95
2766 4327 8.655970 CATCTTTAATCATCACAGTACAACGAA 58.344 33.333 0.00 0.00 0.00 3.85
2767 4328 8.032451 TCATCTTTAATCATCACAGTACAACGA 58.968 33.333 0.00 0.00 0.00 3.85
2768 4329 8.185003 TCATCTTTAATCATCACAGTACAACG 57.815 34.615 0.00 0.00 0.00 4.10
2787 4348 9.846248 CGGAAAAACTTTCAATCTATTCATCTT 57.154 29.630 1.88 0.00 0.00 2.40
2788 4349 9.014297 ACGGAAAAACTTTCAATCTATTCATCT 57.986 29.630 1.88 0.00 0.00 2.90
2899 4491 2.227194 GAACTCGGTCCAACCAAACAT 58.773 47.619 0.00 0.00 38.47 2.71
2942 4534 5.781210 TTTGTGTGGATTATGCAAAGACA 57.219 34.783 0.00 0.00 0.00 3.41
3175 4770 1.247567 AAATGTTTCCTGTGAGGGCG 58.752 50.000 0.00 0.00 35.59 6.13
3202 4797 1.228245 GCCCTTGAGTTGGTGAGCA 60.228 57.895 0.00 0.00 0.00 4.26
3231 4826 0.397187 TGGTACGCCTTTACCTTGCA 59.603 50.000 2.09 0.00 42.03 4.08
3240 4835 2.779755 TCAATCATGTGGTACGCCTT 57.220 45.000 0.00 0.00 38.60 4.35
3248 4856 4.059511 GCTCTGAGAGATCAATCATGTGG 58.940 47.826 14.78 0.00 0.00 4.17
3321 4929 2.347292 GCAACGACAACAACTACGAGTG 60.347 50.000 0.00 0.00 0.00 3.51
3327 4935 3.382855 ACATACGCAACGACAACAACTA 58.617 40.909 0.00 0.00 0.00 2.24
3331 4939 1.333347 GCAACATACGCAACGACAACA 60.333 47.619 0.00 0.00 0.00 3.33
3351 4959 2.610694 GGCATGATGATCACCGGCG 61.611 63.158 0.00 0.00 0.00 6.46
3375 4983 2.230992 CTCCTCGGTGAGATGATCATCC 59.769 54.545 28.23 20.44 40.92 3.51
3393 5001 1.340017 TGCAGCTAATGAACCACCTCC 60.340 52.381 0.00 0.00 0.00 4.30
3435 5048 2.761208 CGACTTTGACTAGGAGATGGGT 59.239 50.000 0.00 0.00 0.00 4.51
3470 5083 1.563924 TAACTGTGGCCTATCACCGT 58.436 50.000 3.32 0.00 36.82 4.83
3472 5085 3.560636 ACATAACTGTGGCCTATCACC 57.439 47.619 3.32 0.00 36.87 4.02
3511 5136 3.059120 CCGTGTCGTCATATATCTGTCGT 60.059 47.826 7.40 0.00 0.00 4.34
3531 5260 1.897398 GCTACAAGACCGCAACACCG 61.897 60.000 0.00 0.00 0.00 4.94
3540 5269 1.204941 AGTGGATGACGCTACAAGACC 59.795 52.381 0.00 0.00 38.39 3.85
3574 5303 1.274167 TCGTCCGCTAACCTGAACATT 59.726 47.619 0.00 0.00 0.00 2.71
3589 5318 0.101579 GGAGCAGCTAAGTCTCGTCC 59.898 60.000 0.00 0.00 0.00 4.79
3591 5320 0.323908 AGGGAGCAGCTAAGTCTCGT 60.324 55.000 0.00 0.00 0.00 4.18
3592 5321 0.383949 GAGGGAGCAGCTAAGTCTCG 59.616 60.000 0.00 0.00 0.00 4.04
3593 5322 1.408702 CTGAGGGAGCAGCTAAGTCTC 59.591 57.143 0.00 0.91 0.00 3.36
3594 5323 1.484038 CTGAGGGAGCAGCTAAGTCT 58.516 55.000 0.00 0.00 0.00 3.24
3607 5336 4.889112 ATGGGCGCATGCTGAGGG 62.889 66.667 16.43 0.00 42.25 4.30
3609 5338 3.285215 GGATGGGCGCATGCTGAG 61.285 66.667 24.97 0.81 42.25 3.35
3610 5339 3.424780 ATGGATGGGCGCATGCTGA 62.425 57.895 30.17 15.68 42.25 4.26
3611 5340 2.910479 ATGGATGGGCGCATGCTG 60.910 61.111 30.17 10.56 42.25 4.41
3612 5341 2.910479 CATGGATGGGCGCATGCT 60.910 61.111 30.17 16.39 42.25 3.79
3613 5342 4.657824 GCATGGATGGGCGCATGC 62.658 66.667 25.40 25.40 40.98 4.06
3615 5344 2.596631 GAGCATGGATGGGCGCAT 60.597 61.111 17.19 17.19 34.54 4.73
3616 5345 4.881440 GGAGCATGGATGGGCGCA 62.881 66.667 10.83 5.70 34.54 6.09
3631 5841 0.401356 ATCATGCCACATATGCGGGA 59.599 50.000 16.14 11.90 0.00 5.14
3635 5845 6.916440 TCTAATCAAATCATGCCACATATGC 58.084 36.000 1.58 0.00 0.00 3.14
3637 5847 8.467963 TGTTCTAATCAAATCATGCCACATAT 57.532 30.769 0.00 0.00 0.00 1.78
3641 5851 7.887996 TTTTGTTCTAATCAAATCATGCCAC 57.112 32.000 0.00 0.00 35.25 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.