Multiple sequence alignment - TraesCS2A01G403300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G403300 chr2A 100.000 6817 0 0 1000 7816 658484928 658478112 0.000000e+00 12589.0
1 TraesCS2A01G403300 chr2A 100.000 581 0 0 1 581 658485927 658485347 0.000000e+00 1074.0
2 TraesCS2A01G403300 chr2D 95.426 4941 111 29 2418 7306 514346395 514341518 0.000000e+00 7766.0
3 TraesCS2A01G403300 chr2D 96.913 1166 30 1 1000 2165 514348017 514346858 0.000000e+00 1949.0
4 TraesCS2A01G403300 chr2D 97.647 425 10 0 2166 2590 514346818 514346394 0.000000e+00 730.0
5 TraesCS2A01G403300 chr2D 90.316 475 25 9 7351 7816 514341524 514341062 3.120000e-168 603.0
6 TraesCS2A01G403300 chr2D 98.266 173 3 0 391 563 514348316 514348144 3.540000e-78 303.0
7 TraesCS2A01G403300 chr2B 95.365 3991 128 20 3736 7693 606041755 606037789 0.000000e+00 6292.0
8 TraesCS2A01G403300 chr2B 97.308 1300 25 4 2457 3748 606044413 606043116 0.000000e+00 2198.0
9 TraesCS2A01G403300 chr2B 95.830 1175 40 2 1000 2165 606046799 606045625 0.000000e+00 1890.0
10 TraesCS2A01G403300 chr2B 96.049 329 12 1 2455 2782 606045267 606044939 1.150000e-147 534.0
11 TraesCS2A01G403300 chr2B 96.335 191 5 2 391 581 606047104 606046916 5.890000e-81 313.0
12 TraesCS2A01G403300 chr2B 97.170 106 3 0 2166 2271 606045585 606045480 6.230000e-41 180.0
13 TraesCS2A01G403300 chr2B 89.922 129 5 4 7691 7816 606037744 606037621 8.120000e-35 159.0
14 TraesCS2A01G403300 chr2B 94.175 103 5 1 2268 2369 606045368 606045266 1.050000e-33 156.0
15 TraesCS2A01G403300 chr2B 91.071 112 7 2 6927 7038 529499379 529499487 1.760000e-31 148.0
16 TraesCS2A01G403300 chr4A 96.000 400 14 2 1 400 97263771 97264168 0.000000e+00 649.0
17 TraesCS2A01G403300 chr4A 94.103 407 18 6 1 403 494068832 494069236 1.440000e-171 614.0
18 TraesCS2A01G403300 chr5A 95.685 394 16 1 1 394 394752479 394752871 3.980000e-177 632.0
19 TraesCS2A01G403300 chr3A 95.897 390 15 1 1 390 658886163 658886551 1.430000e-176 630.0
20 TraesCS2A01G403300 chr3A 94.924 394 17 3 1 394 323098104 323097714 1.440000e-171 614.0
21 TraesCS2A01G403300 chr3A 100.000 32 0 0 7691 7722 149719373 149719404 8.470000e-05 60.2
22 TraesCS2A01G403300 chr1A 95.025 402 19 1 1 402 102161029 102160629 1.430000e-176 630.0
23 TraesCS2A01G403300 chr7A 95.652 391 15 2 1 390 671309273 671309662 1.850000e-175 627.0
24 TraesCS2A01G403300 chr7A 95.641 390 16 1 1 390 720917606 720917218 6.660000e-175 625.0
25 TraesCS2A01G403300 chr6B 95.630 389 15 2 1 389 642911244 642911630 2.400000e-174 623.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G403300 chr2A 658478112 658485927 7815 True 6831.50 12589 100.00000 1 7816 2 chr2A.!!$R1 7815
1 TraesCS2A01G403300 chr2D 514341062 514348316 7254 True 2270.20 7766 95.71360 391 7816 5 chr2D.!!$R1 7425
2 TraesCS2A01G403300 chr2B 606037621 606047104 9483 True 1465.25 6292 95.26925 391 7816 8 chr2B.!!$R1 7425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.036010 AGCTTCAAGACCCCACATCG 60.036 55.000 0.00 0.00 0.00 3.84 F
125 126 0.036010 CTTCAAGACCCCACATCGCT 60.036 55.000 0.00 0.00 0.00 4.93 F
249 250 0.106519 ACTGGAATGCCACATAGCCC 60.107 55.000 0.00 0.00 39.92 5.19 F
250 251 0.106569 CTGGAATGCCACATAGCCCA 60.107 55.000 0.00 0.00 39.92 5.36 F
358 359 0.319083 ACCAAACTGACCATCGCGTA 59.681 50.000 5.77 0.00 0.00 4.42 F
363 364 0.601558 ACTGACCATCGCGTACAAGT 59.398 50.000 5.77 0.91 0.00 3.16 F
1129 1130 0.813821 GTTCCGCTACGACCCTAAGT 59.186 55.000 0.00 0.00 0.00 2.24 F
1846 1856 0.908198 GGTTGATCTGAGGCAGGAGT 59.092 55.000 0.00 0.00 31.51 3.85 F
3151 4175 1.476891 CTATATGATGACCCGGGTCCG 59.523 57.143 43.35 20.78 43.97 4.79 F
4564 7014 1.202592 TGTGAGGCTCGTACTGCAAAA 60.203 47.619 10.42 0.00 0.00 2.44 F
4652 7102 1.341852 TGCAGTTGCGTAAGGTGAGTA 59.658 47.619 0.00 0.00 45.83 2.59 F
4653 7103 2.028476 TGCAGTTGCGTAAGGTGAGTAT 60.028 45.455 0.00 0.00 45.83 2.12 F
6062 8520 2.092267 TGTGGGAGCATCTGCATGTTAT 60.092 45.455 4.79 0.00 45.16 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1383 1390 0.388649 CGTCGTCTTCAGGGTCCAAG 60.389 60.000 0.00 0.0 0.00 3.61 R
1386 1393 0.531200 AATCGTCGTCTTCAGGGTCC 59.469 55.000 0.00 0.0 0.00 4.46 R
1507 1517 1.936547 GATGTCGGAGTCCTCAAATGC 59.063 52.381 7.77 0.0 0.00 3.56 R
1846 1856 2.037902 TCCGTGCTGAAGAACCATACAA 59.962 45.455 0.00 0.0 0.00 2.41 R
1989 1999 4.987285 CCACATCTTCCTGTTCTCATATCG 59.013 45.833 0.00 0.0 0.00 2.92 R
2423 2587 4.667519 ACCAAACGGTGATCTAGTATCC 57.332 45.455 0.00 0.0 34.62 2.59 R
3151 4175 1.098050 CTGGGCAAACTATCAGGTGC 58.902 55.000 0.00 0.0 36.24 5.01 R
3841 6237 1.278537 TGCTGATCACACCTCCATGA 58.721 50.000 0.00 0.0 0.00 3.07 R
4774 7226 0.599204 ACGTCAACCTTGCGATTCGT 60.599 50.000 8.03 0.0 33.88 3.85 R
6346 8826 0.037590 TGCGAGGGTGCCTAACATTT 59.962 50.000 0.00 0.0 31.76 2.32 R
6350 8830 0.464452 ATAGTGCGAGGGTGCCTAAC 59.536 55.000 0.00 0.0 31.76 2.34 R
6351 8831 2.076207 TATAGTGCGAGGGTGCCTAA 57.924 50.000 0.00 0.0 31.76 2.69 R
7648 10139 1.334243 GCAGAGAATACGTAGCGGAGT 59.666 52.381 0.08 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.836864 ATGATACAGAAATTAGTCATTGCTACA 57.163 29.630 0.00 0.00 28.11 2.74
45 46 9.836864 TGATACAGAAATTAGTCATTGCTACAT 57.163 29.630 0.00 0.00 28.11 2.29
58 59 9.955102 AGTCATTGCTACATATACATGAATGAT 57.045 29.630 0.00 0.00 35.66 2.45
60 61 9.947433 TCATTGCTACATATACATGAATGATCA 57.053 29.630 0.00 0.00 40.57 2.92
62 63 9.955102 ATTGCTACATATACATGAATGATCAGT 57.045 29.630 0.00 0.00 39.39 3.41
69 70 9.583765 CATATACATGAATGATCAGTAGTCTGG 57.416 37.037 0.00 0.00 39.39 3.86
70 71 5.946942 ACATGAATGATCAGTAGTCTGGT 57.053 39.130 0.00 0.00 41.59 4.00
71 72 5.668471 ACATGAATGATCAGTAGTCTGGTG 58.332 41.667 0.00 1.05 41.59 4.17
72 73 4.743057 TGAATGATCAGTAGTCTGGTGG 57.257 45.455 0.09 0.00 41.59 4.61
73 74 4.096681 TGAATGATCAGTAGTCTGGTGGT 58.903 43.478 0.09 0.00 41.59 4.16
74 75 4.532126 TGAATGATCAGTAGTCTGGTGGTT 59.468 41.667 0.09 0.00 41.59 3.67
75 76 3.961480 TGATCAGTAGTCTGGTGGTTG 57.039 47.619 0.00 0.00 41.59 3.77
76 77 3.239449 TGATCAGTAGTCTGGTGGTTGT 58.761 45.455 0.00 0.00 41.59 3.32
77 78 3.258372 TGATCAGTAGTCTGGTGGTTGTC 59.742 47.826 0.00 0.00 41.59 3.18
78 79 1.968493 TCAGTAGTCTGGTGGTTGTCC 59.032 52.381 0.00 0.00 41.59 4.02
79 80 1.691976 CAGTAGTCTGGTGGTTGTCCA 59.308 52.381 0.00 0.00 38.44 4.02
87 88 4.524869 TGGTTGTCCACGTGTGAC 57.475 55.556 22.58 22.58 39.03 3.67
88 89 1.901820 TGGTTGTCCACGTGTGACT 59.098 52.632 26.61 0.00 39.03 3.41
89 90 1.112950 TGGTTGTCCACGTGTGACTA 58.887 50.000 26.61 20.57 39.03 2.59
90 91 1.202440 TGGTTGTCCACGTGTGACTAC 60.202 52.381 26.93 26.93 39.03 2.73
91 92 1.068127 GGTTGTCCACGTGTGACTACT 59.932 52.381 30.00 0.00 0.00 2.57
92 93 2.294233 GGTTGTCCACGTGTGACTACTA 59.706 50.000 30.00 15.59 0.00 1.82
93 94 3.562505 GTTGTCCACGTGTGACTACTAG 58.437 50.000 27.25 9.39 0.00 2.57
94 95 2.156917 TGTCCACGTGTGACTACTAGG 58.843 52.381 26.61 6.78 0.00 3.02
95 96 2.224597 TGTCCACGTGTGACTACTAGGA 60.225 50.000 26.61 8.77 0.00 2.94
96 97 2.161211 GTCCACGTGTGACTACTAGGAC 59.839 54.545 22.27 12.49 36.07 3.85
97 98 2.156917 CCACGTGTGACTACTAGGACA 58.843 52.381 15.65 0.00 0.00 4.02
98 99 2.095364 CCACGTGTGACTACTAGGACAC 60.095 54.545 15.65 9.25 36.23 3.67
101 102 3.911661 GTGTGACTACTAGGACACGTT 57.088 47.619 0.00 0.00 36.25 3.99
102 103 3.562505 GTGTGACTACTAGGACACGTTG 58.437 50.000 0.00 0.00 36.25 4.10
103 104 2.030540 TGTGACTACTAGGACACGTTGC 60.031 50.000 0.00 0.00 36.25 4.17
104 105 2.030540 GTGACTACTAGGACACGTTGCA 60.031 50.000 0.00 0.00 0.00 4.08
105 106 2.228103 TGACTACTAGGACACGTTGCAG 59.772 50.000 0.00 0.00 0.00 4.41
106 107 1.067776 ACTACTAGGACACGTTGCAGC 60.068 52.381 0.00 0.00 0.00 5.25
107 108 1.202582 CTACTAGGACACGTTGCAGCT 59.797 52.381 0.00 0.00 0.00 4.24
108 109 0.393077 ACTAGGACACGTTGCAGCTT 59.607 50.000 0.00 0.00 0.00 3.74
109 110 1.071605 CTAGGACACGTTGCAGCTTC 58.928 55.000 0.00 0.00 0.00 3.86
110 111 0.391228 TAGGACACGTTGCAGCTTCA 59.609 50.000 0.00 0.00 0.00 3.02
111 112 0.463654 AGGACACGTTGCAGCTTCAA 60.464 50.000 0.00 0.00 0.00 2.69
112 113 0.040958 GGACACGTTGCAGCTTCAAG 60.041 55.000 0.00 0.00 0.00 3.02
113 114 0.937304 GACACGTTGCAGCTTCAAGA 59.063 50.000 0.00 0.00 0.00 3.02
114 115 0.657840 ACACGTTGCAGCTTCAAGAC 59.342 50.000 0.00 0.00 0.00 3.01
115 116 0.040958 CACGTTGCAGCTTCAAGACC 60.041 55.000 0.00 0.00 0.00 3.85
116 117 1.166531 ACGTTGCAGCTTCAAGACCC 61.167 55.000 0.00 0.00 0.00 4.46
117 118 1.856265 CGTTGCAGCTTCAAGACCCC 61.856 60.000 0.00 0.00 0.00 4.95
118 119 0.823356 GTTGCAGCTTCAAGACCCCA 60.823 55.000 0.00 0.00 0.00 4.96
119 120 0.823356 TTGCAGCTTCAAGACCCCAC 60.823 55.000 0.00 0.00 0.00 4.61
120 121 1.228245 GCAGCTTCAAGACCCCACA 60.228 57.895 0.00 0.00 0.00 4.17
121 122 0.610232 GCAGCTTCAAGACCCCACAT 60.610 55.000 0.00 0.00 0.00 3.21
122 123 1.457346 CAGCTTCAAGACCCCACATC 58.543 55.000 0.00 0.00 0.00 3.06
123 124 0.036010 AGCTTCAAGACCCCACATCG 60.036 55.000 0.00 0.00 0.00 3.84
124 125 1.648467 GCTTCAAGACCCCACATCGC 61.648 60.000 0.00 0.00 0.00 4.58
125 126 0.036010 CTTCAAGACCCCACATCGCT 60.036 55.000 0.00 0.00 0.00 4.93
126 127 0.400213 TTCAAGACCCCACATCGCTT 59.600 50.000 0.00 0.00 0.00 4.68
127 128 0.321564 TCAAGACCCCACATCGCTTG 60.322 55.000 0.00 0.00 37.79 4.01
128 129 0.606401 CAAGACCCCACATCGCTTGT 60.606 55.000 0.00 0.00 39.91 3.16
129 130 0.110486 AAGACCCCACATCGCTTGTT 59.890 50.000 0.00 0.00 36.00 2.83
130 131 0.110486 AGACCCCACATCGCTTGTTT 59.890 50.000 0.00 0.00 36.00 2.83
131 132 0.958822 GACCCCACATCGCTTGTTTT 59.041 50.000 0.00 0.00 36.00 2.43
132 133 1.339929 GACCCCACATCGCTTGTTTTT 59.660 47.619 0.00 0.00 36.00 1.94
190 191 6.625873 AAAAAGTCAAAGGCTTCTCTACAG 57.374 37.500 0.00 0.00 0.00 2.74
191 192 5.552870 AAAGTCAAAGGCTTCTCTACAGA 57.447 39.130 0.00 0.00 0.00 3.41
192 193 5.753721 AAGTCAAAGGCTTCTCTACAGAT 57.246 39.130 0.00 0.00 0.00 2.90
193 194 5.337578 AGTCAAAGGCTTCTCTACAGATC 57.662 43.478 0.00 0.00 0.00 2.75
194 195 5.022787 AGTCAAAGGCTTCTCTACAGATCT 58.977 41.667 0.00 0.00 0.00 2.75
195 196 6.191315 AGTCAAAGGCTTCTCTACAGATCTA 58.809 40.000 0.00 0.00 0.00 1.98
196 197 6.096282 AGTCAAAGGCTTCTCTACAGATCTAC 59.904 42.308 0.00 0.00 0.00 2.59
197 198 5.952347 TCAAAGGCTTCTCTACAGATCTACA 59.048 40.000 0.00 0.00 0.00 2.74
198 199 6.609212 TCAAAGGCTTCTCTACAGATCTACAT 59.391 38.462 0.00 0.00 0.00 2.29
199 200 6.403866 AAGGCTTCTCTACAGATCTACATG 57.596 41.667 0.00 0.00 0.00 3.21
200 201 4.280677 AGGCTTCTCTACAGATCTACATGC 59.719 45.833 0.00 0.00 0.00 4.06
201 202 4.280677 GGCTTCTCTACAGATCTACATGCT 59.719 45.833 0.00 0.00 0.00 3.79
202 203 5.475220 GGCTTCTCTACAGATCTACATGCTA 59.525 44.000 0.00 0.00 0.00 3.49
203 204 6.378582 GCTTCTCTACAGATCTACATGCTAC 58.621 44.000 0.00 0.00 0.00 3.58
204 205 6.016693 GCTTCTCTACAGATCTACATGCTACA 60.017 42.308 0.00 0.00 0.00 2.74
205 206 7.469318 GCTTCTCTACAGATCTACATGCTACAA 60.469 40.741 0.00 0.00 0.00 2.41
206 207 7.265647 TCTCTACAGATCTACATGCTACAAC 57.734 40.000 0.00 0.00 0.00 3.32
207 208 6.017852 TCTCTACAGATCTACATGCTACAACG 60.018 42.308 0.00 0.00 0.00 4.10
208 209 4.046938 ACAGATCTACATGCTACAACGG 57.953 45.455 0.00 0.00 0.00 4.44
209 210 3.699538 ACAGATCTACATGCTACAACGGA 59.300 43.478 0.00 0.00 0.00 4.69
210 211 4.342378 ACAGATCTACATGCTACAACGGAT 59.658 41.667 0.00 0.00 0.00 4.18
211 212 4.683320 CAGATCTACATGCTACAACGGATG 59.317 45.833 0.00 0.00 38.51 3.51
212 213 4.584743 AGATCTACATGCTACAACGGATGA 59.415 41.667 0.00 0.00 36.39 2.92
213 214 4.041740 TCTACATGCTACAACGGATGAC 57.958 45.455 0.00 0.00 36.39 3.06
214 215 2.760634 ACATGCTACAACGGATGACA 57.239 45.000 0.00 0.00 36.39 3.58
215 216 3.052455 ACATGCTACAACGGATGACAA 57.948 42.857 0.00 0.00 36.39 3.18
216 217 3.609853 ACATGCTACAACGGATGACAAT 58.390 40.909 0.00 0.00 36.39 2.71
217 218 3.374988 ACATGCTACAACGGATGACAATG 59.625 43.478 0.00 0.00 36.39 2.82
218 219 2.355197 TGCTACAACGGATGACAATGG 58.645 47.619 0.00 0.00 0.00 3.16
219 220 1.670811 GCTACAACGGATGACAATGGG 59.329 52.381 0.00 0.00 0.00 4.00
220 221 1.670811 CTACAACGGATGACAATGGGC 59.329 52.381 0.00 0.00 0.00 5.36
221 222 0.965363 ACAACGGATGACAATGGGCC 60.965 55.000 0.00 0.00 0.00 5.80
222 223 1.379843 AACGGATGACAATGGGCCC 60.380 57.895 17.59 17.59 0.00 5.80
223 224 1.863155 AACGGATGACAATGGGCCCT 61.863 55.000 25.70 0.66 0.00 5.19
224 225 1.825191 CGGATGACAATGGGCCCTG 60.825 63.158 25.70 17.05 0.00 4.45
225 226 1.456331 GGATGACAATGGGCCCTGG 60.456 63.158 25.70 14.85 0.00 4.45
226 227 2.042639 ATGACAATGGGCCCTGGC 60.043 61.111 25.70 17.52 41.06 4.85
236 237 3.006677 GCCCTGGCCATACTGGAA 58.993 61.111 5.51 0.00 40.96 3.53
237 238 1.538666 GCCCTGGCCATACTGGAAT 59.461 57.895 5.51 0.00 40.96 3.01
238 239 0.825010 GCCCTGGCCATACTGGAATG 60.825 60.000 5.51 0.00 40.96 2.67
239 240 0.825010 CCCTGGCCATACTGGAATGC 60.825 60.000 5.51 0.00 40.96 3.56
240 241 0.825010 CCTGGCCATACTGGAATGCC 60.825 60.000 5.51 0.00 40.96 4.40
241 242 0.106569 CTGGCCATACTGGAATGCCA 60.107 55.000 5.51 5.70 40.96 4.92
242 243 0.395586 TGGCCATACTGGAATGCCAC 60.396 55.000 0.00 0.00 40.96 5.01
243 244 0.395586 GGCCATACTGGAATGCCACA 60.396 55.000 0.00 0.00 40.96 4.17
244 245 1.696063 GCCATACTGGAATGCCACAT 58.304 50.000 0.00 0.00 40.96 3.21
245 246 2.488891 GGCCATACTGGAATGCCACATA 60.489 50.000 0.00 0.00 40.96 2.29
246 247 2.816087 GCCATACTGGAATGCCACATAG 59.184 50.000 0.00 0.00 40.96 2.23
247 248 2.816087 CCATACTGGAATGCCACATAGC 59.184 50.000 0.00 0.00 40.96 2.97
248 249 2.638480 TACTGGAATGCCACATAGCC 57.362 50.000 0.00 0.00 39.92 3.93
249 250 0.106519 ACTGGAATGCCACATAGCCC 60.107 55.000 0.00 0.00 39.92 5.19
250 251 0.106569 CTGGAATGCCACATAGCCCA 60.107 55.000 0.00 0.00 39.92 5.36
251 252 0.557238 TGGAATGCCACATAGCCCAT 59.443 50.000 0.00 0.00 39.92 4.00
252 253 0.963962 GGAATGCCACATAGCCCATG 59.036 55.000 0.00 0.00 40.78 3.66
253 254 0.963962 GAATGCCACATAGCCCATGG 59.036 55.000 4.14 4.14 39.13 3.66
254 255 0.557238 AATGCCACATAGCCCATGGA 59.443 50.000 15.22 0.00 39.13 3.41
255 256 0.781920 ATGCCACATAGCCCATGGAT 59.218 50.000 15.22 3.69 39.13 3.41
256 257 1.443852 TGCCACATAGCCCATGGATA 58.556 50.000 15.22 6.18 39.13 2.59
257 258 1.073763 TGCCACATAGCCCATGGATAC 59.926 52.381 15.22 1.82 39.13 2.24
258 259 1.945819 GCCACATAGCCCATGGATACG 60.946 57.143 15.22 0.49 39.13 3.06
259 260 1.347707 CCACATAGCCCATGGATACGT 59.652 52.381 15.22 1.20 39.13 3.57
260 261 2.612972 CCACATAGCCCATGGATACGTC 60.613 54.545 15.22 0.00 39.13 4.34
261 262 1.623811 ACATAGCCCATGGATACGTCC 59.376 52.381 15.22 0.00 45.31 4.79
272 273 3.425577 GGATACGTCCGTGTACATGAA 57.574 47.619 16.87 0.00 34.13 2.57
273 274 3.772932 GGATACGTCCGTGTACATGAAA 58.227 45.455 16.87 1.43 34.13 2.69
274 275 4.365723 GGATACGTCCGTGTACATGAAAT 58.634 43.478 16.87 2.54 34.13 2.17
275 276 4.208460 GGATACGTCCGTGTACATGAAATG 59.792 45.833 16.87 11.38 42.18 2.32
277 278 8.133628 GGATACGTCCGTGTACATGAAATGTG 62.134 46.154 16.87 0.00 46.27 3.21
292 293 6.210396 TGAAATGTGATCGTATATGAACGC 57.790 37.500 8.42 8.42 42.56 4.84
293 294 5.983118 TGAAATGTGATCGTATATGAACGCT 59.017 36.000 14.55 0.00 42.56 5.07
294 295 6.478673 TGAAATGTGATCGTATATGAACGCTT 59.521 34.615 14.55 7.54 42.56 4.68
295 296 5.829233 ATGTGATCGTATATGAACGCTTG 57.171 39.130 14.55 0.00 42.56 4.01
296 297 4.678622 TGTGATCGTATATGAACGCTTGT 58.321 39.130 14.55 0.00 42.56 3.16
297 298 5.823353 TGTGATCGTATATGAACGCTTGTA 58.177 37.500 14.55 0.00 42.56 2.41
298 299 5.684184 TGTGATCGTATATGAACGCTTGTAC 59.316 40.000 14.55 0.00 42.56 2.90
299 300 5.684184 GTGATCGTATATGAACGCTTGTACA 59.316 40.000 8.16 0.00 42.56 2.90
300 301 6.197655 GTGATCGTATATGAACGCTTGTACAA 59.802 38.462 8.28 8.28 42.56 2.41
301 302 6.416750 TGATCGTATATGAACGCTTGTACAAG 59.583 38.462 27.85 27.85 42.56 3.16
302 303 5.643664 TCGTATATGAACGCTTGTACAAGT 58.356 37.500 30.90 15.82 42.56 3.16
303 304 6.094719 TCGTATATGAACGCTTGTACAAGTT 58.905 36.000 30.90 21.49 42.56 2.66
304 305 6.587226 TCGTATATGAACGCTTGTACAAGTTT 59.413 34.615 30.90 24.51 42.56 2.66
305 306 6.676995 CGTATATGAACGCTTGTACAAGTTTG 59.323 38.462 30.90 23.58 40.45 2.93
306 307 6.795098 ATATGAACGCTTGTACAAGTTTGA 57.205 33.333 30.90 20.63 40.45 2.69
307 308 5.689383 ATGAACGCTTGTACAAGTTTGAT 57.311 34.783 30.90 21.66 40.45 2.57
308 309 4.843147 TGAACGCTTGTACAAGTTTGATG 58.157 39.130 30.90 18.16 40.45 3.07
309 310 4.572795 TGAACGCTTGTACAAGTTTGATGA 59.427 37.500 30.90 12.07 40.45 2.92
310 311 4.468095 ACGCTTGTACAAGTTTGATGAC 57.532 40.909 30.90 14.44 40.45 3.06
311 312 3.250040 ACGCTTGTACAAGTTTGATGACC 59.750 43.478 30.90 13.83 40.45 4.02
312 313 3.664276 CGCTTGTACAAGTTTGATGACCG 60.664 47.826 30.90 20.24 40.45 4.79
313 314 3.364964 GCTTGTACAAGTTTGATGACCGG 60.365 47.826 30.90 0.00 40.45 5.28
314 315 3.755112 TGTACAAGTTTGATGACCGGA 57.245 42.857 9.46 0.00 0.00 5.14
315 316 4.074627 TGTACAAGTTTGATGACCGGAA 57.925 40.909 9.46 0.00 0.00 4.30
316 317 4.452825 TGTACAAGTTTGATGACCGGAAA 58.547 39.130 9.46 0.00 0.00 3.13
317 318 3.982576 ACAAGTTTGATGACCGGAAAC 57.017 42.857 9.46 8.16 0.00 2.78
318 319 3.283751 ACAAGTTTGATGACCGGAAACA 58.716 40.909 9.46 5.76 32.96 2.83
319 320 3.888930 ACAAGTTTGATGACCGGAAACAT 59.111 39.130 9.46 10.96 32.96 2.71
320 321 4.229096 CAAGTTTGATGACCGGAAACATG 58.771 43.478 9.46 7.51 32.96 3.21
321 322 3.486383 AGTTTGATGACCGGAAACATGT 58.514 40.909 9.46 0.00 32.96 3.21
322 323 4.647611 AGTTTGATGACCGGAAACATGTA 58.352 39.130 9.46 0.00 32.96 2.29
323 324 5.253330 AGTTTGATGACCGGAAACATGTAT 58.747 37.500 9.46 0.00 32.96 2.29
324 325 5.710099 AGTTTGATGACCGGAAACATGTATT 59.290 36.000 9.46 0.00 32.96 1.89
325 326 6.208599 AGTTTGATGACCGGAAACATGTATTT 59.791 34.615 9.46 0.00 32.96 1.40
326 327 6.582677 TTGATGACCGGAAACATGTATTTT 57.417 33.333 9.46 0.00 0.00 1.82
327 328 7.689446 TTGATGACCGGAAACATGTATTTTA 57.311 32.000 9.46 0.00 0.00 1.52
328 329 7.079182 TGATGACCGGAAACATGTATTTTAC 57.921 36.000 9.46 0.00 0.00 2.01
329 330 6.655425 TGATGACCGGAAACATGTATTTTACA 59.345 34.615 9.46 0.18 43.80 2.41
330 331 6.879276 TGACCGGAAACATGTATTTTACAA 57.121 33.333 9.46 0.00 42.76 2.41
331 332 6.904498 TGACCGGAAACATGTATTTTACAAG 58.096 36.000 9.46 0.00 42.76 3.16
332 333 6.487331 TGACCGGAAACATGTATTTTACAAGT 59.513 34.615 9.46 0.00 41.79 3.16
341 342 8.980143 ACATGTATTTTACAAGTTTATGCACC 57.020 30.769 0.00 0.00 42.76 5.01
342 343 8.580720 ACATGTATTTTACAAGTTTATGCACCA 58.419 29.630 0.00 0.00 42.76 4.17
343 344 9.416794 CATGTATTTTACAAGTTTATGCACCAA 57.583 29.630 0.00 0.00 42.76 3.67
344 345 9.988815 ATGTATTTTACAAGTTTATGCACCAAA 57.011 25.926 0.00 0.00 42.76 3.28
345 346 9.250624 TGTATTTTACAAGTTTATGCACCAAAC 57.749 29.630 14.89 14.89 35.38 2.93
346 347 9.471084 GTATTTTACAAGTTTATGCACCAAACT 57.529 29.630 18.14 18.14 45.73 2.66
347 348 7.763172 TTTTACAAGTTTATGCACCAAACTG 57.237 32.000 22.38 18.55 43.62 3.16
348 349 6.701145 TTACAAGTTTATGCACCAAACTGA 57.299 33.333 22.38 12.27 43.62 3.41
349 350 4.932146 ACAAGTTTATGCACCAAACTGAC 58.068 39.130 22.38 2.72 43.62 3.51
350 351 4.202111 ACAAGTTTATGCACCAAACTGACC 60.202 41.667 22.38 1.94 43.62 4.02
351 352 3.561143 AGTTTATGCACCAAACTGACCA 58.439 40.909 21.47 0.00 42.98 4.02
352 353 4.151883 AGTTTATGCACCAAACTGACCAT 58.848 39.130 21.47 3.33 42.98 3.55
353 354 4.218417 AGTTTATGCACCAAACTGACCATC 59.782 41.667 21.47 0.00 42.98 3.51
354 355 1.167851 ATGCACCAAACTGACCATCG 58.832 50.000 0.00 0.00 0.00 3.84
355 356 1.210155 GCACCAAACTGACCATCGC 59.790 57.895 0.00 0.00 0.00 4.58
356 357 1.497278 CACCAAACTGACCATCGCG 59.503 57.895 0.00 0.00 0.00 5.87
357 358 1.070786 ACCAAACTGACCATCGCGT 59.929 52.632 5.77 0.00 0.00 6.01
358 359 0.319083 ACCAAACTGACCATCGCGTA 59.681 50.000 5.77 0.00 0.00 4.42
359 360 0.719465 CCAAACTGACCATCGCGTAC 59.281 55.000 5.77 0.00 0.00 3.67
360 361 1.424403 CAAACTGACCATCGCGTACA 58.576 50.000 5.77 0.00 0.00 2.90
361 362 1.795872 CAAACTGACCATCGCGTACAA 59.204 47.619 5.77 0.00 0.00 2.41
362 363 1.710013 AACTGACCATCGCGTACAAG 58.290 50.000 5.77 0.23 0.00 3.16
363 364 0.601558 ACTGACCATCGCGTACAAGT 59.398 50.000 5.77 0.91 0.00 3.16
364 365 1.000506 ACTGACCATCGCGTACAAGTT 59.999 47.619 5.77 0.00 0.00 2.66
365 366 1.654105 CTGACCATCGCGTACAAGTTC 59.346 52.381 5.77 0.00 0.00 3.01
366 367 1.271379 TGACCATCGCGTACAAGTTCT 59.729 47.619 5.77 0.00 0.00 3.01
367 368 2.488937 TGACCATCGCGTACAAGTTCTA 59.511 45.455 5.77 0.00 0.00 2.10
368 369 3.129813 TGACCATCGCGTACAAGTTCTAT 59.870 43.478 5.77 0.00 0.00 1.98
369 370 3.444916 ACCATCGCGTACAAGTTCTATG 58.555 45.455 5.77 0.00 0.00 2.23
370 371 3.129813 ACCATCGCGTACAAGTTCTATGA 59.870 43.478 5.77 0.00 0.00 2.15
371 372 3.486108 CCATCGCGTACAAGTTCTATGAC 59.514 47.826 5.77 0.00 0.00 3.06
372 373 4.352039 CATCGCGTACAAGTTCTATGACT 58.648 43.478 5.77 0.00 0.00 3.41
373 374 4.430137 TCGCGTACAAGTTCTATGACTT 57.570 40.909 5.77 0.00 40.37 3.01
374 375 4.409570 TCGCGTACAAGTTCTATGACTTC 58.590 43.478 5.77 0.00 37.76 3.01
375 376 4.083164 TCGCGTACAAGTTCTATGACTTCA 60.083 41.667 5.77 0.00 37.76 3.02
376 377 4.263209 CGCGTACAAGTTCTATGACTTCAG 59.737 45.833 0.00 0.00 37.76 3.02
377 378 4.563184 GCGTACAAGTTCTATGACTTCAGG 59.437 45.833 0.00 0.00 37.76 3.86
378 379 5.710984 CGTACAAGTTCTATGACTTCAGGT 58.289 41.667 0.00 0.00 37.76 4.00
379 380 5.573282 CGTACAAGTTCTATGACTTCAGGTG 59.427 44.000 0.00 0.00 37.76 4.00
380 381 5.552870 ACAAGTTCTATGACTTCAGGTGT 57.447 39.130 0.00 0.00 37.76 4.16
381 382 6.665992 ACAAGTTCTATGACTTCAGGTGTA 57.334 37.500 0.00 0.00 37.76 2.90
382 383 7.246171 ACAAGTTCTATGACTTCAGGTGTAT 57.754 36.000 0.00 0.00 37.76 2.29
383 384 7.680730 ACAAGTTCTATGACTTCAGGTGTATT 58.319 34.615 0.00 0.00 37.76 1.89
384 385 8.157476 ACAAGTTCTATGACTTCAGGTGTATTT 58.843 33.333 0.00 0.00 37.76 1.40
385 386 9.653287 CAAGTTCTATGACTTCAGGTGTATTTA 57.347 33.333 0.00 0.00 37.76 1.40
386 387 9.654663 AAGTTCTATGACTTCAGGTGTATTTAC 57.345 33.333 0.00 0.00 34.94 2.01
387 388 8.258708 AGTTCTATGACTTCAGGTGTATTTACC 58.741 37.037 0.00 0.00 41.17 2.85
492 493 2.885861 CTCCGTTCTCCCCACTCG 59.114 66.667 0.00 0.00 0.00 4.18
551 552 2.203070 CAATTCTCCCGCTCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
1125 1126 2.360350 TCGTTCCGCTACGACCCT 60.360 61.111 6.20 0.00 44.82 4.34
1129 1130 0.813821 GTTCCGCTACGACCCTAAGT 59.186 55.000 0.00 0.00 0.00 2.24
1249 1256 4.180946 AGAGTAGCTCGCGCGTGG 62.181 66.667 30.98 23.35 42.32 4.94
1342 1349 4.883354 CCTCCAAGGCCGCCATCC 62.883 72.222 13.15 0.00 0.00 3.51
1386 1393 4.573162 GTCCCCGAAGACGACTTG 57.427 61.111 4.51 0.00 42.66 3.16
1416 1423 4.829588 GACGATTTCGACCTCCCC 57.170 61.111 7.01 0.00 43.02 4.81
1650 1660 2.223994 CGATGATGACAGTGATGGCTCT 60.224 50.000 0.00 0.00 0.00 4.09
1846 1856 0.908198 GGTTGATCTGAGGCAGGAGT 59.092 55.000 0.00 0.00 31.51 3.85
1965 1975 6.934083 TGCAGTTTACATGTCTTGAACTATCA 59.066 34.615 0.00 7.69 0.00 2.15
1989 1999 6.051646 AGTTTTTGTCTTTTGATGCAATGC 57.948 33.333 0.00 0.00 0.00 3.56
2381 2545 6.978659 TGGTAGTCTTGTTCGATCATTACATC 59.021 38.462 0.00 0.00 0.00 3.06
2423 2587 9.429359 AGAAACTAACTTGATGTAGATCACTTG 57.571 33.333 1.27 0.00 38.38 3.16
2568 3584 5.361135 TTGTCTTGTCATGTGCTAATGTG 57.639 39.130 0.00 0.00 0.00 3.21
2625 3641 6.106877 ACGATGTTGTCTTGCATTACATAC 57.893 37.500 2.79 5.38 30.95 2.39
2671 3687 6.999272 AGAGTAGTACCAGTCAACGATCATAT 59.001 38.462 0.00 0.00 0.00 1.78
2923 3939 2.778299 TGCGCCCTGTCCATTATTATC 58.222 47.619 4.18 0.00 0.00 1.75
2943 3967 1.939934 CGTGGACTGTTGTTCATGTGT 59.060 47.619 0.00 0.00 34.71 3.72
3151 4175 1.476891 CTATATGATGACCCGGGTCCG 59.523 57.143 43.35 20.78 43.97 4.79
3649 4673 5.305139 TGATTTGCATGTGAGTCTTGATG 57.695 39.130 0.00 0.00 0.00 3.07
3832 6228 4.641989 ACCAATATCCTGCATGTCAAAGAC 59.358 41.667 0.00 0.00 0.00 3.01
3841 6237 3.947196 TGCATGTCAAAGACTCACAAAGT 59.053 39.130 0.00 0.00 42.42 2.66
3996 6440 6.856426 GCTTGTGGTTCAACACTATTAACTTC 59.144 38.462 0.00 0.00 41.84 3.01
4072 6516 8.455903 ACTCATAACACTGAATTTATGATGGG 57.544 34.615 4.87 0.00 41.59 4.00
4080 6524 5.532406 ACTGAATTTATGATGGGTTCATCCG 59.468 40.000 4.22 0.00 46.92 4.18
4462 6912 5.048083 TCCCTGTTTGAACTACATTGATTGC 60.048 40.000 0.00 0.00 0.00 3.56
4564 7014 1.202592 TGTGAGGCTCGTACTGCAAAA 60.203 47.619 10.42 0.00 0.00 2.44
4652 7102 1.341852 TGCAGTTGCGTAAGGTGAGTA 59.658 47.619 0.00 0.00 45.83 2.59
4653 7103 2.028476 TGCAGTTGCGTAAGGTGAGTAT 60.028 45.455 0.00 0.00 45.83 2.12
4774 7226 5.743026 TTTACAGCGACAAAGATGTTGAA 57.257 34.783 0.43 0.00 42.66 2.69
4924 7376 4.013050 GGTTTCTCCTAATCAGCTGCTTT 58.987 43.478 9.47 7.89 0.00 3.51
4936 7388 2.941720 CAGCTGCTTTCACCTCCTATTC 59.058 50.000 0.00 0.00 0.00 1.75
4994 7446 3.827008 TCTGATTTTCGCTATCCTGCT 57.173 42.857 0.00 0.00 0.00 4.24
5117 7569 3.321497 TGGTTTTGCTGTTGAAACACAC 58.679 40.909 0.00 0.00 37.46 3.82
5199 7651 8.964772 CATTCAATTCTTAATTTCTCCTCCAGT 58.035 33.333 0.00 0.00 0.00 4.00
5264 7716 2.541346 AGACGAGCATGTATTTGCATCG 59.459 45.455 13.00 13.00 45.23 3.84
5321 7774 3.454812 GGTTAGCCAGTTCCTATCCAAGA 59.545 47.826 0.00 0.00 34.09 3.02
5322 7775 4.080526 GGTTAGCCAGTTCCTATCCAAGAA 60.081 45.833 0.00 0.00 34.09 2.52
5808 8266 7.789202 AGGAGCTGATACAGTCATAATACAT 57.211 36.000 0.00 0.00 35.97 2.29
5920 8378 4.864247 GCGGCTCAAAATATGACATTTGTT 59.136 37.500 0.00 0.00 37.68 2.83
5955 8413 5.531634 TGCTTCTATTTTTGCTGTTTCTGG 58.468 37.500 0.00 0.00 0.00 3.86
5966 8424 3.199727 TGCTGTTTCTGGCCATATGACTA 59.800 43.478 5.51 0.00 0.00 2.59
6033 8491 7.041098 ACAATGGTTCACTTCTCTACAACATTC 60.041 37.037 0.00 0.00 0.00 2.67
6062 8520 2.092267 TGTGGGAGCATCTGCATGTTAT 60.092 45.455 4.79 0.00 45.16 1.89
6066 8524 3.190118 GGGAGCATCTGCATGTTATAAGC 59.810 47.826 4.79 0.00 45.16 3.09
6299 8758 4.660789 ATGCAATTCAAAGTATGGAGGC 57.339 40.909 0.00 0.00 0.00 4.70
6338 8818 8.782533 TTTCAGAAGTAATTCTTTTCTTTCGC 57.217 30.769 1.94 0.00 36.40 4.70
6339 8819 7.730364 TCAGAAGTAATTCTTTTCTTTCGCT 57.270 32.000 1.94 0.00 36.40 4.93
6340 8820 8.154649 TCAGAAGTAATTCTTTTCTTTCGCTT 57.845 30.769 1.94 0.00 36.40 4.68
6341 8821 8.621286 TCAGAAGTAATTCTTTTCTTTCGCTTT 58.379 29.630 1.94 0.00 36.40 3.51
6342 8822 9.878599 CAGAAGTAATTCTTTTCTTTCGCTTTA 57.121 29.630 1.94 0.00 36.40 1.85
6362 8842 6.978659 GCTTTAATAAAATGTTAGGCACCCTC 59.021 38.462 0.00 0.00 34.61 4.30
6499 8985 3.371285 GTCCGCTTAGTCTGTTTCCATTC 59.629 47.826 0.00 0.00 0.00 2.67
6716 9203 4.193826 TGCAAGGAGAAAGCTAGTACTG 57.806 45.455 5.39 0.00 0.00 2.74
6880 9368 1.817099 CTGCGGAGATGTCCTTGGC 60.817 63.158 7.39 3.86 41.34 4.52
6917 9405 3.405831 CTTCATTCAAGCACCACTCAGA 58.594 45.455 0.00 0.00 0.00 3.27
6967 9455 2.804986 TGATGATGCTGGTGCCTTTA 57.195 45.000 0.00 0.00 38.71 1.85
6975 9463 3.095332 TGCTGGTGCCTTTATGCATTAA 58.905 40.909 3.54 0.00 44.30 1.40
7041 9529 3.607741 ACTGATGATCTTCTGCAACCTG 58.392 45.455 13.35 0.00 0.00 4.00
7128 9616 3.300239 AGCTCGAAGTAGGGTGTAGAT 57.700 47.619 0.00 0.00 0.00 1.98
7173 9662 6.096705 CAGAAGTCTCAGAACAGACATCCTAT 59.903 42.308 3.56 0.00 44.73 2.57
7232 9721 8.322906 TGGTATTAATGAAATGGAGAATAGCG 57.677 34.615 0.00 0.00 32.56 4.26
7235 9724 7.678947 ATTAATGAAATGGAGAATAGCGGAG 57.321 36.000 0.00 0.00 0.00 4.63
7286 9775 4.542697 AGGGTTTTAACATGTTGTCCACT 58.457 39.130 21.42 9.45 0.00 4.00
7373 9863 4.705991 GCTGTACCTCTGTTAAGTACTCCT 59.294 45.833 0.00 0.00 37.76 3.69
7489 9980 5.970317 TTCTGACTGTCTGTACGGAATTA 57.030 39.130 5.82 0.00 35.79 1.40
7545 10036 8.158169 TCATACATGAAACAAGATTATGCTCC 57.842 34.615 0.00 0.00 33.08 4.70
7648 10139 4.285863 AGGAAATGGGTTGAACAACTTCA 58.714 39.130 15.60 14.08 40.94 3.02
7660 10151 1.881973 ACAACTTCACTCCGCTACGTA 59.118 47.619 0.00 0.00 0.00 3.57
7674 10165 3.623863 GCTACGTATTCTCTGCAGAGTC 58.376 50.000 36.32 24.38 42.60 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.836864 TGTAGCAATGACTAATTTCTGTATCAT 57.163 29.630 0.00 0.00 0.00 2.45
19 20 9.836864 ATGTAGCAATGACTAATTTCTGTATCA 57.163 29.630 0.00 0.00 0.00 2.15
32 33 9.955102 ATCATTCATGTATATGTAGCAATGACT 57.045 29.630 13.13 4.76 36.99 3.41
34 35 9.947433 TGATCATTCATGTATATGTAGCAATGA 57.053 29.630 13.19 13.19 37.78 2.57
36 37 9.955102 ACTGATCATTCATGTATATGTAGCAAT 57.045 29.630 0.00 0.00 35.73 3.56
43 44 9.583765 CCAGACTACTGATCATTCATGTATATG 57.416 37.037 0.00 0.00 46.03 1.78
44 45 9.319060 ACCAGACTACTGATCATTCATGTATAT 57.681 33.333 0.00 0.00 46.03 0.86
45 46 8.579863 CACCAGACTACTGATCATTCATGTATA 58.420 37.037 0.00 0.00 46.03 1.47
46 47 7.440198 CACCAGACTACTGATCATTCATGTAT 58.560 38.462 0.00 0.00 46.03 2.29
47 48 6.183360 CCACCAGACTACTGATCATTCATGTA 60.183 42.308 0.00 0.00 46.03 2.29
48 49 5.396101 CCACCAGACTACTGATCATTCATGT 60.396 44.000 0.00 0.00 46.03 3.21
49 50 5.055144 CCACCAGACTACTGATCATTCATG 58.945 45.833 0.00 0.00 46.03 3.07
50 51 4.718774 ACCACCAGACTACTGATCATTCAT 59.281 41.667 0.00 0.00 46.03 2.57
51 52 4.096681 ACCACCAGACTACTGATCATTCA 58.903 43.478 0.00 0.00 46.03 2.57
52 53 4.744795 ACCACCAGACTACTGATCATTC 57.255 45.455 0.00 0.00 46.03 2.67
53 54 4.287067 ACAACCACCAGACTACTGATCATT 59.713 41.667 0.00 0.00 46.03 2.57
54 55 3.840666 ACAACCACCAGACTACTGATCAT 59.159 43.478 0.00 0.00 46.03 2.45
55 56 3.239449 ACAACCACCAGACTACTGATCA 58.761 45.455 0.00 0.00 46.03 2.92
56 57 3.368531 GGACAACCACCAGACTACTGATC 60.369 52.174 0.00 0.00 40.03 2.92
57 58 2.567615 GGACAACCACCAGACTACTGAT 59.432 50.000 0.00 0.00 40.03 2.90
58 59 1.968493 GGACAACCACCAGACTACTGA 59.032 52.381 0.00 0.00 40.03 3.41
59 60 1.691976 TGGACAACCACCAGACTACTG 59.308 52.381 0.00 0.00 41.77 2.74
60 61 2.097110 TGGACAACCACCAGACTACT 57.903 50.000 0.00 0.00 41.77 2.57
70 71 1.112950 TAGTCACACGTGGACAACCA 58.887 50.000 27.63 14.00 44.76 3.67
71 72 1.068127 AGTAGTCACACGTGGACAACC 59.932 52.381 27.63 18.49 37.74 3.77
72 73 2.503920 AGTAGTCACACGTGGACAAC 57.496 50.000 27.63 17.30 37.74 3.32
73 74 2.555325 CCTAGTAGTCACACGTGGACAA 59.445 50.000 27.63 15.17 37.74 3.18
74 75 2.156917 CCTAGTAGTCACACGTGGACA 58.843 52.381 27.63 16.60 37.74 4.02
75 76 2.161211 GTCCTAGTAGTCACACGTGGAC 59.839 54.545 21.57 21.91 37.97 4.02
76 77 2.224597 TGTCCTAGTAGTCACACGTGGA 60.225 50.000 21.57 11.48 0.00 4.02
77 78 2.095364 GTGTCCTAGTAGTCACACGTGG 60.095 54.545 21.57 9.11 30.49 4.94
78 79 3.198863 GTGTCCTAGTAGTCACACGTG 57.801 52.381 15.48 15.48 30.49 4.49
81 82 3.562505 CAACGTGTCCTAGTAGTCACAC 58.437 50.000 15.25 15.25 36.57 3.82
82 83 2.030540 GCAACGTGTCCTAGTAGTCACA 60.031 50.000 17.12 8.58 0.00 3.58
83 84 2.030540 TGCAACGTGTCCTAGTAGTCAC 60.031 50.000 10.72 10.72 0.00 3.67
84 85 2.228103 CTGCAACGTGTCCTAGTAGTCA 59.772 50.000 0.00 0.00 0.00 3.41
85 86 2.864968 CTGCAACGTGTCCTAGTAGTC 58.135 52.381 0.00 0.00 0.00 2.59
86 87 1.067776 GCTGCAACGTGTCCTAGTAGT 60.068 52.381 0.00 0.00 0.00 2.73
87 88 1.202582 AGCTGCAACGTGTCCTAGTAG 59.797 52.381 1.02 0.00 0.00 2.57
88 89 1.254026 AGCTGCAACGTGTCCTAGTA 58.746 50.000 1.02 0.00 0.00 1.82
89 90 0.393077 AAGCTGCAACGTGTCCTAGT 59.607 50.000 1.02 0.00 0.00 2.57
90 91 1.071605 GAAGCTGCAACGTGTCCTAG 58.928 55.000 1.02 0.00 0.00 3.02
91 92 0.391228 TGAAGCTGCAACGTGTCCTA 59.609 50.000 1.02 0.00 0.00 2.94
92 93 0.463654 TTGAAGCTGCAACGTGTCCT 60.464 50.000 1.85 0.00 0.00 3.85
93 94 0.040958 CTTGAAGCTGCAACGTGTCC 60.041 55.000 1.85 0.00 0.00 4.02
94 95 0.937304 TCTTGAAGCTGCAACGTGTC 59.063 50.000 1.85 0.00 0.00 3.67
95 96 0.657840 GTCTTGAAGCTGCAACGTGT 59.342 50.000 1.85 0.00 0.00 4.49
96 97 0.040958 GGTCTTGAAGCTGCAACGTG 60.041 55.000 1.85 0.00 0.00 4.49
97 98 1.166531 GGGTCTTGAAGCTGCAACGT 61.167 55.000 1.85 0.00 0.00 3.99
98 99 1.576421 GGGTCTTGAAGCTGCAACG 59.424 57.895 1.85 0.12 0.00 4.10
99 100 0.823356 TGGGGTCTTGAAGCTGCAAC 60.823 55.000 1.85 0.00 0.00 4.17
100 101 0.823356 GTGGGGTCTTGAAGCTGCAA 60.823 55.000 7.01 7.01 0.00 4.08
101 102 1.228245 GTGGGGTCTTGAAGCTGCA 60.228 57.895 1.02 0.00 0.00 4.41
102 103 0.610232 ATGTGGGGTCTTGAAGCTGC 60.610 55.000 0.00 0.00 0.00 5.25
103 104 1.457346 GATGTGGGGTCTTGAAGCTG 58.543 55.000 0.00 0.00 0.00 4.24
104 105 0.036010 CGATGTGGGGTCTTGAAGCT 60.036 55.000 0.00 0.00 0.00 3.74
105 106 1.648467 GCGATGTGGGGTCTTGAAGC 61.648 60.000 0.00 0.00 0.00 3.86
106 107 0.036010 AGCGATGTGGGGTCTTGAAG 60.036 55.000 0.00 0.00 0.00 3.02
107 108 0.400213 AAGCGATGTGGGGTCTTGAA 59.600 50.000 0.00 0.00 0.00 2.69
108 109 0.321564 CAAGCGATGTGGGGTCTTGA 60.322 55.000 0.00 0.00 37.03 3.02
109 110 0.606401 ACAAGCGATGTGGGGTCTTG 60.606 55.000 0.00 0.00 41.93 3.02
110 111 0.110486 AACAAGCGATGTGGGGTCTT 59.890 50.000 0.00 0.00 42.99 3.01
111 112 0.110486 AAACAAGCGATGTGGGGTCT 59.890 50.000 0.00 0.00 42.99 3.85
112 113 0.958822 AAAACAAGCGATGTGGGGTC 59.041 50.000 0.00 0.00 42.99 4.46
113 114 1.408969 AAAAACAAGCGATGTGGGGT 58.591 45.000 0.00 0.00 42.99 4.95
167 168 6.357367 TCTGTAGAGAAGCCTTTGACTTTTT 58.643 36.000 0.00 0.00 0.00 1.94
168 169 5.930135 TCTGTAGAGAAGCCTTTGACTTTT 58.070 37.500 0.00 0.00 0.00 2.27
169 170 5.552870 TCTGTAGAGAAGCCTTTGACTTT 57.447 39.130 0.00 0.00 0.00 2.66
170 171 5.483583 AGATCTGTAGAGAAGCCTTTGACTT 59.516 40.000 0.00 0.00 0.00 3.01
171 172 5.022787 AGATCTGTAGAGAAGCCTTTGACT 58.977 41.667 0.00 0.00 0.00 3.41
172 173 5.337578 AGATCTGTAGAGAAGCCTTTGAC 57.662 43.478 0.00 0.00 0.00 3.18
173 174 5.952347 TGTAGATCTGTAGAGAAGCCTTTGA 59.048 40.000 5.18 0.00 0.00 2.69
174 175 6.214191 TGTAGATCTGTAGAGAAGCCTTTG 57.786 41.667 5.18 0.00 0.00 2.77
175 176 6.685116 GCATGTAGATCTGTAGAGAAGCCTTT 60.685 42.308 5.18 0.00 0.00 3.11
176 177 5.221422 GCATGTAGATCTGTAGAGAAGCCTT 60.221 44.000 5.18 0.00 0.00 4.35
177 178 4.280677 GCATGTAGATCTGTAGAGAAGCCT 59.719 45.833 5.18 0.00 0.00 4.58
178 179 4.280677 AGCATGTAGATCTGTAGAGAAGCC 59.719 45.833 5.18 0.00 0.00 4.35
179 180 5.452078 AGCATGTAGATCTGTAGAGAAGC 57.548 43.478 5.18 0.00 0.00 3.86
180 181 7.503521 TGTAGCATGTAGATCTGTAGAGAAG 57.496 40.000 5.18 0.00 0.00 2.85
181 182 7.467403 CGTTGTAGCATGTAGATCTGTAGAGAA 60.467 40.741 5.18 0.00 0.00 2.87
182 183 6.017852 CGTTGTAGCATGTAGATCTGTAGAGA 60.018 42.308 5.18 0.00 0.00 3.10
183 184 6.139435 CGTTGTAGCATGTAGATCTGTAGAG 58.861 44.000 5.18 0.00 0.00 2.43
184 185 5.008712 CCGTTGTAGCATGTAGATCTGTAGA 59.991 44.000 5.18 0.00 0.00 2.59
185 186 5.008712 TCCGTTGTAGCATGTAGATCTGTAG 59.991 44.000 5.18 0.00 0.00 2.74
186 187 4.885325 TCCGTTGTAGCATGTAGATCTGTA 59.115 41.667 5.18 0.00 0.00 2.74
187 188 3.699538 TCCGTTGTAGCATGTAGATCTGT 59.300 43.478 5.18 0.00 0.00 3.41
188 189 4.307443 TCCGTTGTAGCATGTAGATCTG 57.693 45.455 5.18 0.00 0.00 2.90
189 190 4.584743 TCATCCGTTGTAGCATGTAGATCT 59.415 41.667 0.00 0.00 0.00 2.75
190 191 4.681942 GTCATCCGTTGTAGCATGTAGATC 59.318 45.833 0.00 0.00 0.00 2.75
191 192 4.099419 TGTCATCCGTTGTAGCATGTAGAT 59.901 41.667 0.00 0.00 0.00 1.98
192 193 3.445805 TGTCATCCGTTGTAGCATGTAGA 59.554 43.478 0.00 0.00 0.00 2.59
193 194 3.780902 TGTCATCCGTTGTAGCATGTAG 58.219 45.455 0.00 0.00 0.00 2.74
194 195 3.878160 TGTCATCCGTTGTAGCATGTA 57.122 42.857 0.00 0.00 0.00 2.29
195 196 2.760634 TGTCATCCGTTGTAGCATGT 57.239 45.000 0.00 0.00 0.00 3.21
196 197 3.242837 CCATTGTCATCCGTTGTAGCATG 60.243 47.826 0.00 0.00 0.00 4.06
197 198 2.945008 CCATTGTCATCCGTTGTAGCAT 59.055 45.455 0.00 0.00 0.00 3.79
198 199 2.355197 CCATTGTCATCCGTTGTAGCA 58.645 47.619 0.00 0.00 0.00 3.49
199 200 1.670811 CCCATTGTCATCCGTTGTAGC 59.329 52.381 0.00 0.00 0.00 3.58
200 201 1.670811 GCCCATTGTCATCCGTTGTAG 59.329 52.381 0.00 0.00 0.00 2.74
201 202 1.680555 GGCCCATTGTCATCCGTTGTA 60.681 52.381 0.00 0.00 0.00 2.41
202 203 0.965363 GGCCCATTGTCATCCGTTGT 60.965 55.000 0.00 0.00 0.00 3.32
203 204 1.666209 GGGCCCATTGTCATCCGTTG 61.666 60.000 19.95 0.00 0.00 4.10
204 205 1.379843 GGGCCCATTGTCATCCGTT 60.380 57.895 19.95 0.00 0.00 4.44
205 206 2.275418 GGGCCCATTGTCATCCGT 59.725 61.111 19.95 0.00 0.00 4.69
206 207 1.825191 CAGGGCCCATTGTCATCCG 60.825 63.158 27.56 0.00 0.00 4.18
207 208 1.456331 CCAGGGCCCATTGTCATCC 60.456 63.158 27.56 0.00 0.00 3.51
208 209 2.129785 GCCAGGGCCCATTGTCATC 61.130 63.158 27.56 0.00 34.56 2.92
209 210 2.042639 GCCAGGGCCCATTGTCAT 60.043 61.111 27.56 0.00 34.56 3.06
227 228 2.816087 GGCTATGTGGCATTCCAGTATG 59.184 50.000 0.00 0.00 44.48 2.39
228 229 2.224867 GGGCTATGTGGCATTCCAGTAT 60.225 50.000 0.00 0.00 44.48 2.12
229 230 1.142870 GGGCTATGTGGCATTCCAGTA 59.857 52.381 0.00 0.00 44.48 2.74
230 231 0.106519 GGGCTATGTGGCATTCCAGT 60.107 55.000 0.00 0.00 44.48 4.00
231 232 0.106569 TGGGCTATGTGGCATTCCAG 60.107 55.000 0.00 0.00 44.48 3.86
232 233 0.557238 ATGGGCTATGTGGCATTCCA 59.443 50.000 0.00 0.00 43.83 3.53
233 234 0.963962 CATGGGCTATGTGGCATTCC 59.036 55.000 2.19 0.00 43.83 3.01
234 235 0.963962 CCATGGGCTATGTGGCATTC 59.036 55.000 10.11 0.00 43.83 2.67
235 236 0.557238 TCCATGGGCTATGTGGCATT 59.443 50.000 13.02 0.00 43.83 3.56
236 237 0.781920 ATCCATGGGCTATGTGGCAT 59.218 50.000 13.02 0.00 43.83 4.40
237 238 1.073763 GTATCCATGGGCTATGTGGCA 59.926 52.381 13.02 0.00 43.83 4.92
238 239 1.826385 GTATCCATGGGCTATGTGGC 58.174 55.000 13.02 0.00 40.96 5.01
239 240 1.347707 ACGTATCCATGGGCTATGTGG 59.652 52.381 13.02 0.00 34.87 4.17
240 241 2.612972 GGACGTATCCATGGGCTATGTG 60.613 54.545 19.01 1.89 45.47 3.21
241 242 1.623811 GGACGTATCCATGGGCTATGT 59.376 52.381 13.02 14.78 45.47 2.29
242 243 1.404181 CGGACGTATCCATGGGCTATG 60.404 57.143 13.02 11.75 46.67 2.23
243 244 0.895530 CGGACGTATCCATGGGCTAT 59.104 55.000 13.02 0.08 46.67 2.97
244 245 0.468585 ACGGACGTATCCATGGGCTA 60.469 55.000 13.02 1.05 46.67 3.93
245 246 1.760875 ACGGACGTATCCATGGGCT 60.761 57.895 13.02 2.14 46.67 5.19
246 247 1.594293 CACGGACGTATCCATGGGC 60.594 63.158 13.02 1.75 46.67 5.36
247 248 1.034356 TACACGGACGTATCCATGGG 58.966 55.000 13.02 0.00 42.81 4.00
248 249 1.406180 TGTACACGGACGTATCCATGG 59.594 52.381 4.97 4.97 42.81 3.66
249 250 2.855660 TGTACACGGACGTATCCATG 57.144 50.000 0.00 0.00 46.67 3.66
250 251 2.953648 TCATGTACACGGACGTATCCAT 59.046 45.455 0.00 0.00 46.67 3.41
251 252 2.367486 TCATGTACACGGACGTATCCA 58.633 47.619 0.00 0.00 46.67 3.41
252 253 3.425577 TTCATGTACACGGACGTATCC 57.574 47.619 0.00 0.00 42.28 2.59
253 254 4.802039 ACATTTCATGTACACGGACGTATC 59.198 41.667 0.00 0.00 42.78 2.24
254 255 4.565166 CACATTTCATGTACACGGACGTAT 59.435 41.667 0.00 0.00 42.70 3.06
255 256 3.921630 CACATTTCATGTACACGGACGTA 59.078 43.478 0.00 0.00 42.70 3.57
256 257 2.734606 CACATTTCATGTACACGGACGT 59.265 45.455 0.00 0.00 42.70 4.34
257 258 2.990514 TCACATTTCATGTACACGGACG 59.009 45.455 0.00 0.00 42.70 4.79
258 259 4.259810 CGATCACATTTCATGTACACGGAC 60.260 45.833 0.00 0.00 42.70 4.79
259 260 3.862845 CGATCACATTTCATGTACACGGA 59.137 43.478 0.00 0.00 42.70 4.69
260 261 3.616821 ACGATCACATTTCATGTACACGG 59.383 43.478 0.00 0.00 42.70 4.94
261 262 4.840401 ACGATCACATTTCATGTACACG 57.160 40.909 0.00 0.00 42.70 4.49
262 263 9.191995 TCATATACGATCACATTTCATGTACAC 57.808 33.333 0.00 0.00 42.70 2.90
263 264 9.757227 TTCATATACGATCACATTTCATGTACA 57.243 29.630 0.00 0.00 42.70 2.90
265 266 8.911662 CGTTCATATACGATCACATTTCATGTA 58.088 33.333 0.00 0.00 41.89 2.29
266 267 7.569408 GCGTTCATATACGATCACATTTCATGT 60.569 37.037 2.21 0.00 43.42 3.21
267 268 6.733725 GCGTTCATATACGATCACATTTCATG 59.266 38.462 2.21 0.00 43.99 3.07
268 269 6.646653 AGCGTTCATATACGATCACATTTCAT 59.353 34.615 2.21 0.00 43.99 2.57
269 270 5.983118 AGCGTTCATATACGATCACATTTCA 59.017 36.000 2.21 0.00 43.99 2.69
270 271 6.453643 AGCGTTCATATACGATCACATTTC 57.546 37.500 2.21 0.00 43.99 2.17
271 272 6.257849 ACAAGCGTTCATATACGATCACATTT 59.742 34.615 2.21 0.00 43.99 2.32
272 273 5.753438 ACAAGCGTTCATATACGATCACATT 59.247 36.000 2.21 0.00 43.99 2.71
273 274 5.289595 ACAAGCGTTCATATACGATCACAT 58.710 37.500 2.21 0.00 43.99 3.21
274 275 4.678622 ACAAGCGTTCATATACGATCACA 58.321 39.130 2.21 0.00 43.99 3.58
275 276 5.684184 TGTACAAGCGTTCATATACGATCAC 59.316 40.000 2.21 0.00 43.99 3.06
276 277 5.823353 TGTACAAGCGTTCATATACGATCA 58.177 37.500 2.21 0.00 43.99 2.92
277 278 6.417044 ACTTGTACAAGCGTTCATATACGATC 59.583 38.462 30.97 0.00 39.50 3.69
278 279 6.270815 ACTTGTACAAGCGTTCATATACGAT 58.729 36.000 30.97 7.54 42.62 3.73
279 280 5.643664 ACTTGTACAAGCGTTCATATACGA 58.356 37.500 30.97 0.00 43.00 3.43
280 281 5.944049 ACTTGTACAAGCGTTCATATACG 57.056 39.130 30.97 8.11 41.99 3.06
281 282 7.735500 TCAAACTTGTACAAGCGTTCATATAC 58.264 34.615 30.97 0.00 41.99 1.47
282 283 7.892778 TCAAACTTGTACAAGCGTTCATATA 57.107 32.000 30.97 8.26 41.99 0.86
283 284 6.795098 TCAAACTTGTACAAGCGTTCATAT 57.205 33.333 30.97 10.02 41.99 1.78
284 285 6.425417 TCATCAAACTTGTACAAGCGTTCATA 59.575 34.615 30.97 15.01 41.99 2.15
285 286 5.238432 TCATCAAACTTGTACAAGCGTTCAT 59.762 36.000 30.97 16.94 41.99 2.57
286 287 4.572795 TCATCAAACTTGTACAAGCGTTCA 59.427 37.500 30.97 15.52 41.99 3.18
287 288 4.904154 GTCATCAAACTTGTACAAGCGTTC 59.096 41.667 30.97 12.18 41.99 3.95
288 289 4.261031 GGTCATCAAACTTGTACAAGCGTT 60.261 41.667 30.97 22.85 41.99 4.84
289 290 3.250040 GGTCATCAAACTTGTACAAGCGT 59.750 43.478 30.97 18.80 41.99 5.07
290 291 3.664276 CGGTCATCAAACTTGTACAAGCG 60.664 47.826 30.97 20.82 41.99 4.68
291 292 3.364964 CCGGTCATCAAACTTGTACAAGC 60.365 47.826 30.97 14.57 41.99 4.01
292 293 4.062293 TCCGGTCATCAAACTTGTACAAG 58.938 43.478 29.76 29.76 43.79 3.16
293 294 4.074627 TCCGGTCATCAAACTTGTACAA 57.925 40.909 8.28 8.28 0.00 2.41
294 295 3.755112 TCCGGTCATCAAACTTGTACA 57.245 42.857 0.00 0.00 0.00 2.90
295 296 4.273969 TGTTTCCGGTCATCAAACTTGTAC 59.726 41.667 14.59 0.00 32.28 2.90
296 297 4.452825 TGTTTCCGGTCATCAAACTTGTA 58.547 39.130 14.59 0.00 32.28 2.41
297 298 3.283751 TGTTTCCGGTCATCAAACTTGT 58.716 40.909 14.59 0.00 32.28 3.16
298 299 3.980646 TGTTTCCGGTCATCAAACTTG 57.019 42.857 14.59 0.00 32.28 3.16
299 300 3.888930 ACATGTTTCCGGTCATCAAACTT 59.111 39.130 14.59 7.50 32.28 2.66
300 301 3.486383 ACATGTTTCCGGTCATCAAACT 58.514 40.909 14.59 1.30 32.28 2.66
301 302 3.915437 ACATGTTTCCGGTCATCAAAC 57.085 42.857 0.00 4.95 0.00 2.93
302 303 6.582677 AAATACATGTTTCCGGTCATCAAA 57.417 33.333 2.30 0.00 0.00 2.69
303 304 6.582677 AAAATACATGTTTCCGGTCATCAA 57.417 33.333 2.30 0.00 0.00 2.57
304 305 6.655425 TGTAAAATACATGTTTCCGGTCATCA 59.345 34.615 2.30 0.00 32.89 3.07
305 306 7.079182 TGTAAAATACATGTTTCCGGTCATC 57.921 36.000 2.30 0.00 32.89 2.92
306 307 7.175990 ACTTGTAAAATACATGTTTCCGGTCAT 59.824 33.333 2.30 2.41 42.28 3.06
307 308 6.487331 ACTTGTAAAATACATGTTTCCGGTCA 59.513 34.615 2.30 0.00 42.28 4.02
308 309 6.905578 ACTTGTAAAATACATGTTTCCGGTC 58.094 36.000 2.30 0.00 42.28 4.79
309 310 6.887626 ACTTGTAAAATACATGTTTCCGGT 57.112 33.333 2.30 0.00 42.28 5.28
316 317 8.580720 TGGTGCATAAACTTGTAAAATACATGT 58.419 29.630 2.69 2.69 45.46 3.21
317 318 8.978564 TGGTGCATAAACTTGTAAAATACATG 57.021 30.769 0.00 0.00 38.68 3.21
318 319 9.988815 TTTGGTGCATAAACTTGTAAAATACAT 57.011 25.926 0.00 0.00 38.68 2.29
319 320 9.250624 GTTTGGTGCATAAACTTGTAAAATACA 57.749 29.630 17.34 0.00 35.65 2.29
320 321 9.471084 AGTTTGGTGCATAAACTTGTAAAATAC 57.529 29.630 20.05 0.00 43.71 1.89
321 322 9.469807 CAGTTTGGTGCATAAACTTGTAAAATA 57.530 29.630 22.06 0.00 43.71 1.40
322 323 8.200792 TCAGTTTGGTGCATAAACTTGTAAAAT 58.799 29.630 22.06 4.44 43.71 1.82
323 324 7.489757 GTCAGTTTGGTGCATAAACTTGTAAAA 59.510 33.333 22.06 7.71 43.71 1.52
324 325 6.975772 GTCAGTTTGGTGCATAAACTTGTAAA 59.024 34.615 22.06 8.93 43.71 2.01
325 326 6.460399 GGTCAGTTTGGTGCATAAACTTGTAA 60.460 38.462 22.06 10.65 43.71 2.41
326 327 5.009210 GGTCAGTTTGGTGCATAAACTTGTA 59.991 40.000 22.06 12.39 43.71 2.41
327 328 4.202111 GGTCAGTTTGGTGCATAAACTTGT 60.202 41.667 22.06 6.63 43.71 3.16
328 329 4.202101 TGGTCAGTTTGGTGCATAAACTTG 60.202 41.667 22.06 18.05 43.71 3.16
329 330 3.957497 TGGTCAGTTTGGTGCATAAACTT 59.043 39.130 22.06 10.48 43.71 2.66
330 331 3.561143 TGGTCAGTTTGGTGCATAAACT 58.439 40.909 20.05 20.05 46.23 2.66
331 332 4.485163 GATGGTCAGTTTGGTGCATAAAC 58.515 43.478 17.05 17.05 38.09 2.01
332 333 3.190327 CGATGGTCAGTTTGGTGCATAAA 59.810 43.478 0.00 0.00 0.00 1.40
333 334 2.746904 CGATGGTCAGTTTGGTGCATAA 59.253 45.455 0.00 0.00 0.00 1.90
334 335 2.355197 CGATGGTCAGTTTGGTGCATA 58.645 47.619 0.00 0.00 0.00 3.14
335 336 1.167851 CGATGGTCAGTTTGGTGCAT 58.832 50.000 0.00 0.00 0.00 3.96
336 337 1.514678 GCGATGGTCAGTTTGGTGCA 61.515 55.000 0.00 0.00 0.00 4.57
337 338 1.210155 GCGATGGTCAGTTTGGTGC 59.790 57.895 0.00 0.00 0.00 5.01
338 339 1.227999 ACGCGATGGTCAGTTTGGTG 61.228 55.000 15.93 0.00 0.00 4.17
339 340 0.319083 TACGCGATGGTCAGTTTGGT 59.681 50.000 15.93 0.00 0.00 3.67
340 341 0.719465 GTACGCGATGGTCAGTTTGG 59.281 55.000 15.93 0.00 0.00 3.28
341 342 1.424403 TGTACGCGATGGTCAGTTTG 58.576 50.000 15.93 0.00 0.00 2.93
342 343 2.066262 CTTGTACGCGATGGTCAGTTT 58.934 47.619 15.93 0.00 0.00 2.66
343 344 1.000506 ACTTGTACGCGATGGTCAGTT 59.999 47.619 15.93 0.00 0.00 3.16
344 345 0.601558 ACTTGTACGCGATGGTCAGT 59.398 50.000 15.93 3.71 0.00 3.41
345 346 1.654105 GAACTTGTACGCGATGGTCAG 59.346 52.381 15.93 3.00 0.00 3.51
346 347 1.271379 AGAACTTGTACGCGATGGTCA 59.729 47.619 15.93 0.90 0.00 4.02
347 348 1.992170 AGAACTTGTACGCGATGGTC 58.008 50.000 15.93 5.81 0.00 4.02
348 349 3.129813 TCATAGAACTTGTACGCGATGGT 59.870 43.478 15.93 0.70 0.00 3.55
349 350 3.486108 GTCATAGAACTTGTACGCGATGG 59.514 47.826 15.93 0.00 0.00 3.51
350 351 4.352039 AGTCATAGAACTTGTACGCGATG 58.648 43.478 15.93 1.27 0.00 3.84
351 352 4.634184 AGTCATAGAACTTGTACGCGAT 57.366 40.909 15.93 0.00 0.00 4.58
352 353 4.083164 TGAAGTCATAGAACTTGTACGCGA 60.083 41.667 15.93 0.00 39.55 5.87
353 354 4.163552 TGAAGTCATAGAACTTGTACGCG 58.836 43.478 3.53 3.53 39.55 6.01
354 355 4.563184 CCTGAAGTCATAGAACTTGTACGC 59.437 45.833 0.00 0.00 39.55 4.42
355 356 5.573282 CACCTGAAGTCATAGAACTTGTACG 59.427 44.000 0.00 0.00 39.55 3.67
356 357 6.456501 ACACCTGAAGTCATAGAACTTGTAC 58.543 40.000 0.00 0.00 39.55 2.90
357 358 6.665992 ACACCTGAAGTCATAGAACTTGTA 57.334 37.500 0.00 0.00 39.55 2.41
358 359 5.552870 ACACCTGAAGTCATAGAACTTGT 57.447 39.130 0.00 0.00 39.55 3.16
359 360 8.553459 AAATACACCTGAAGTCATAGAACTTG 57.447 34.615 0.00 0.00 39.55 3.16
360 361 9.654663 GTAAATACACCTGAAGTCATAGAACTT 57.345 33.333 0.00 0.00 42.10 2.66
361 362 8.258708 GGTAAATACACCTGAAGTCATAGAACT 58.741 37.037 0.00 0.00 35.55 3.01
362 363 8.421673 GGTAAATACACCTGAAGTCATAGAAC 57.578 38.462 0.00 0.00 35.55 3.01
492 493 1.934220 GAAACTTTGGCGGCCCTAGC 61.934 60.000 17.97 0.00 38.76 3.42
1125 1126 1.651240 CGACGGCGGAGGAAGACTTA 61.651 60.000 13.24 0.00 0.00 2.24
1383 1390 0.388649 CGTCGTCTTCAGGGTCCAAG 60.389 60.000 0.00 0.00 0.00 3.61
1386 1393 0.531200 AATCGTCGTCTTCAGGGTCC 59.469 55.000 0.00 0.00 0.00 4.46
1507 1517 1.936547 GATGTCGGAGTCCTCAAATGC 59.063 52.381 7.77 0.00 0.00 3.56
1650 1660 4.193893 ACCACAGCAGCAGCCACA 62.194 61.111 0.00 0.00 43.56 4.17
1846 1856 2.037902 TCCGTGCTGAAGAACCATACAA 59.962 45.455 0.00 0.00 0.00 2.41
1965 1975 6.488817 GCATTGCATCAAAAGACAAAAACTT 58.511 32.000 3.15 0.00 0.00 2.66
1989 1999 4.987285 CCACATCTTCCTGTTCTCATATCG 59.013 45.833 0.00 0.00 0.00 2.92
2423 2587 4.667519 ACCAAACGGTGATCTAGTATCC 57.332 45.455 0.00 0.00 34.62 2.59
2568 3584 1.207593 CAGCAAGCACTAACACGGC 59.792 57.895 0.00 0.00 0.00 5.68
2625 3641 8.498054 ACTCTGATAACCTCACAAACATAATG 57.502 34.615 0.00 0.00 0.00 1.90
2923 3939 1.939934 ACACATGAACAACAGTCCACG 59.060 47.619 0.00 0.00 0.00 4.94
2982 4006 3.402110 TGTCACAACAGGCTACAATCAG 58.598 45.455 0.00 0.00 0.00 2.90
3151 4175 1.098050 CTGGGCAAACTATCAGGTGC 58.902 55.000 0.00 0.00 36.24 5.01
3649 4673 3.990318 AAGCTTAAGTTGGACACTTGC 57.010 42.857 0.00 0.00 45.98 4.01
3832 6228 2.810274 CACACCTCCATGACTTTGTGAG 59.190 50.000 10.31 0.11 37.17 3.51
3841 6237 1.278537 TGCTGATCACACCTCCATGA 58.721 50.000 0.00 0.00 0.00 3.07
4072 6516 5.527582 ACATTTCAACTATAGCCGGATGAAC 59.472 40.000 5.05 0.00 0.00 3.18
4080 6524 3.066760 GGGTGCACATTTCAACTATAGCC 59.933 47.826 20.43 0.91 0.00 3.93
4318 6767 3.812167 GCCTAAGGATGAATGGCCCTAAG 60.812 52.174 0.00 0.00 37.81 2.18
4462 6912 3.869246 AGACAAAGTTAACCTGTCACACG 59.131 43.478 27.49 3.83 41.58 4.49
4564 7014 5.393068 TTTGAGGATATTGGCCAGAAGAT 57.607 39.130 5.11 0.00 0.00 2.40
4652 7102 6.131264 TCCTGAATTTTGCATCACAGGATAT 58.869 36.000 18.01 0.00 45.53 1.63
4653 7103 5.508567 TCCTGAATTTTGCATCACAGGATA 58.491 37.500 18.01 4.77 45.53 2.59
4774 7226 0.599204 ACGTCAACCTTGCGATTCGT 60.599 50.000 8.03 0.00 33.88 3.85
4924 7376 4.640771 AAGCAAAGTGAATAGGAGGTGA 57.359 40.909 0.00 0.00 0.00 4.02
4994 7446 5.048504 CAGAATGGCAGAAGAAGCTAACAAA 60.049 40.000 0.00 0.00 0.00 2.83
5117 7569 3.374764 AGCTAATTTAGGGCAAAAGGGG 58.625 45.455 5.61 0.00 0.00 4.79
5199 7651 4.766373 AGCATCACCATGTGTAATCAACAA 59.234 37.500 0.00 0.00 40.63 2.83
5264 7716 2.038387 ATGGTACCTGACATTTCGCC 57.962 50.000 14.36 0.00 0.00 5.54
5399 7852 6.426328 CACTTGAGTCCTAATATGCCTTGATC 59.574 42.308 0.00 0.00 0.00 2.92
5582 8035 2.415010 CCTCCATCGAGACGCCTG 59.585 66.667 0.00 0.00 38.52 4.85
5644 8102 9.154632 ACAAAAGGGATTTTACCAGTTAAGAAT 57.845 29.630 0.00 0.00 0.00 2.40
5808 8266 5.512942 TCTGAGGGTTAAAATCCATGTCA 57.487 39.130 0.00 0.00 0.00 3.58
5920 8378 9.662545 GCAAAAATAGAAGCAGCAAAAATTAAA 57.337 25.926 0.00 0.00 0.00 1.52
5932 8390 5.531634 CCAGAAACAGCAAAAATAGAAGCA 58.468 37.500 0.00 0.00 0.00 3.91
5955 8413 3.692257 ATGCTCACCTAGTCATATGGC 57.308 47.619 0.00 0.00 0.00 4.40
5966 8424 8.757982 ATGAATACTTCAAAATATGCTCACCT 57.242 30.769 0.00 0.00 43.95 4.00
6033 8491 2.868583 CAGATGCTCCCACATTAGAACG 59.131 50.000 0.00 0.00 0.00 3.95
6190 8648 9.023962 TCTTGAGAAATGCAATACAATTAACCT 57.976 29.630 0.00 0.00 0.00 3.50
6191 8649 9.076596 GTCTTGAGAAATGCAATACAATTAACC 57.923 33.333 0.00 0.00 0.00 2.85
6192 8650 9.624697 TGTCTTGAGAAATGCAATACAATTAAC 57.375 29.630 0.00 0.00 31.94 2.01
6195 8653 9.199982 CTTTGTCTTGAGAAATGCAATACAATT 57.800 29.630 0.00 0.00 40.01 2.32
6274 8733 4.757594 TCCATACTTTGAATTGCATTGGC 58.242 39.130 0.00 0.00 41.68 4.52
6299 8758 3.026630 TCTGAAAACTACCAGCACGAG 57.973 47.619 0.00 0.00 0.00 4.18
6332 8812 8.583765 GTGCCTAACATTTTATTAAAGCGAAAG 58.416 33.333 0.00 0.00 0.00 2.62
6333 8813 7.542824 GGTGCCTAACATTTTATTAAAGCGAAA 59.457 33.333 0.00 0.00 0.00 3.46
6334 8814 7.030768 GGTGCCTAACATTTTATTAAAGCGAA 58.969 34.615 0.00 0.00 0.00 4.70
6335 8815 6.404954 GGGTGCCTAACATTTTATTAAAGCGA 60.405 38.462 0.00 0.00 0.00 4.93
6336 8816 5.746721 GGGTGCCTAACATTTTATTAAAGCG 59.253 40.000 0.00 0.00 0.00 4.68
6337 8817 6.873997 AGGGTGCCTAACATTTTATTAAAGC 58.126 36.000 0.00 0.00 28.47 3.51
6338 8818 7.193595 CGAGGGTGCCTAACATTTTATTAAAG 58.806 38.462 0.00 0.00 31.76 1.85
6339 8819 6.404954 GCGAGGGTGCCTAACATTTTATTAAA 60.405 38.462 0.00 0.00 31.76 1.52
6340 8820 5.066764 GCGAGGGTGCCTAACATTTTATTAA 59.933 40.000 0.00 0.00 31.76 1.40
6341 8821 4.577283 GCGAGGGTGCCTAACATTTTATTA 59.423 41.667 0.00 0.00 31.76 0.98
6342 8822 3.380320 GCGAGGGTGCCTAACATTTTATT 59.620 43.478 0.00 0.00 31.76 1.40
6343 8823 2.949644 GCGAGGGTGCCTAACATTTTAT 59.050 45.455 0.00 0.00 31.76 1.40
6344 8824 2.290387 TGCGAGGGTGCCTAACATTTTA 60.290 45.455 0.00 0.00 31.76 1.52
6345 8825 1.173913 GCGAGGGTGCCTAACATTTT 58.826 50.000 0.00 0.00 31.76 1.82
6346 8826 0.037590 TGCGAGGGTGCCTAACATTT 59.962 50.000 0.00 0.00 31.76 2.32
6347 8827 0.676782 GTGCGAGGGTGCCTAACATT 60.677 55.000 0.00 0.00 31.76 2.71
6348 8828 1.078426 GTGCGAGGGTGCCTAACAT 60.078 57.895 0.00 0.00 31.76 2.71
6349 8829 0.901114 TAGTGCGAGGGTGCCTAACA 60.901 55.000 0.00 0.00 31.76 2.41
6350 8830 0.464452 ATAGTGCGAGGGTGCCTAAC 59.536 55.000 0.00 0.00 31.76 2.34
6351 8831 2.076207 TATAGTGCGAGGGTGCCTAA 57.924 50.000 0.00 0.00 31.76 2.69
6352 8832 2.304221 ATATAGTGCGAGGGTGCCTA 57.696 50.000 0.00 0.00 31.76 3.93
6353 8833 2.304221 TATATAGTGCGAGGGTGCCT 57.696 50.000 0.00 0.00 36.03 4.75
6362 8842 7.834068 AAATATCACCAGCTTATATAGTGCG 57.166 36.000 0.00 0.00 0.00 5.34
6394 8874 3.787634 GCAGATTGTATGACGCACATTTG 59.212 43.478 1.26 0.00 40.07 2.32
6458 8944 3.954258 GGACTATGTTCAAAGGGGAATGG 59.046 47.826 0.00 0.00 0.00 3.16
6464 8950 2.403252 AGCGGACTATGTTCAAAGGG 57.597 50.000 0.00 0.00 0.00 3.95
6499 8985 7.011482 CAGTATCCTTCCTTTTTATCTGAACCG 59.989 40.741 0.00 0.00 0.00 4.44
6880 9368 9.472361 CTTGAATGAAGCAAATAATTATCCCAG 57.528 33.333 0.00 0.00 0.00 4.45
6917 9405 5.669798 AGCTTAAGACCCCATGGATAAAT 57.330 39.130 15.22 0.00 34.81 1.40
6967 9455 7.318141 CCAACAAACTGAGAGATTTAATGCAT 58.682 34.615 0.00 0.00 0.00 3.96
6975 9463 4.660168 AGATGCCAACAAACTGAGAGATT 58.340 39.130 0.00 0.00 0.00 2.40
7128 9616 5.680619 TCTGGTTTCAGCACTTTCTAGAAA 58.319 37.500 16.85 16.85 40.69 2.52
7173 9662 7.353414 TCCAACATTTCATCCAGTACAAAAA 57.647 32.000 0.00 0.00 0.00 1.94
7232 9721 5.187186 TCTCTACCATACAGTTTCAACCTCC 59.813 44.000 0.00 0.00 0.00 4.30
7266 9755 5.767816 AGAGTGGACAACATGTTAAAACC 57.232 39.130 11.53 12.14 0.00 3.27
7277 9766 5.703130 AGCTTAAATCTCAAGAGTGGACAAC 59.297 40.000 0.00 0.00 0.00 3.32
7373 9863 3.724374 CGACACTTACTTTGGGACAGAA 58.276 45.455 0.00 0.00 42.39 3.02
7489 9980 7.986085 AAATTACAGTGACTAATTCAGCAGT 57.014 32.000 0.00 0.00 33.71 4.40
7545 10036 3.310774 CAGTGACTGATAATTTGAGGGCG 59.689 47.826 6.79 0.00 32.44 6.13
7602 10093 3.641436 TCTCACTGGCTCAGTCTAAAACA 59.359 43.478 5.02 0.00 43.43 2.83
7607 10098 2.356638 CCTCTCTCACTGGCTCAGTCTA 60.357 54.545 5.02 0.00 43.43 2.59
7620 10111 3.394274 TGTTCAACCCATTTCCTCTCTCA 59.606 43.478 0.00 0.00 0.00 3.27
7648 10139 1.334243 GCAGAGAATACGTAGCGGAGT 59.666 52.381 0.08 0.00 0.00 3.85
7660 10151 2.570752 ACATGGTGACTCTGCAGAGAAT 59.429 45.455 42.76 26.24 44.74 2.40
7772 10315 5.061853 CCAGCAACACATTAGCTATCAGAT 58.938 41.667 0.00 0.00 36.73 2.90
7773 10316 4.162131 TCCAGCAACACATTAGCTATCAGA 59.838 41.667 0.00 0.00 36.73 3.27
7774 10317 4.445453 TCCAGCAACACATTAGCTATCAG 58.555 43.478 0.00 0.00 36.73 2.90
7775 10318 4.445453 CTCCAGCAACACATTAGCTATCA 58.555 43.478 0.00 0.00 36.73 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.