Multiple sequence alignment - TraesCS2A01G402400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G402400 chr2A 100.000 3644 0 0 1 3644 656701390 656705033 0.000000e+00 6730.0
1 TraesCS2A01G402400 chr2A 95.278 360 14 3 3286 3644 163959008 163958651 5.280000e-158 568.0
2 TraesCS2A01G402400 chr2B 95.942 2341 76 8 763 3098 603425970 603428296 0.000000e+00 3779.0
3 TraesCS2A01G402400 chr2B 94.495 218 7 2 546 763 603424072 603424284 7.540000e-87 331.0
4 TraesCS2A01G402400 chr2B 88.298 188 11 3 317 501 603423522 603423701 7.930000e-52 215.0
5 TraesCS2A01G402400 chr2B 87.845 181 13 6 3106 3285 603428337 603428509 1.720000e-48 204.0
6 TraesCS2A01G402400 chr2B 80.192 313 11 16 1 279 603423126 603423421 1.730000e-43 187.0
7 TraesCS2A01G402400 chr2D 95.478 2344 80 12 763 3098 512922819 512925144 0.000000e+00 3718.0
8 TraesCS2A01G402400 chr2D 92.291 454 14 7 317 763 512921442 512921881 3.090000e-175 625.0
9 TraesCS2A01G402400 chr2D 95.184 353 16 1 3289 3641 123292981 123293332 1.140000e-154 556.0
10 TraesCS2A01G402400 chr2D 94.930 355 17 1 3287 3641 418006423 418006776 4.110000e-154 555.0
11 TraesCS2A01G402400 chr2D 85.358 321 9 10 1 299 512921065 512921369 7.650000e-77 298.0
12 TraesCS2A01G402400 chr2D 92.473 186 10 4 3106 3290 512925185 512925367 2.790000e-66 263.0
13 TraesCS2A01G402400 chr6A 78.567 1563 260 54 1052 2576 472949961 472948436 0.000000e+00 961.0
14 TraesCS2A01G402400 chr6A 94.444 360 17 3 3287 3644 170637383 170637025 5.320000e-153 551.0
15 TraesCS2A01G402400 chr6B 78.244 1549 284 41 1049 2576 487133239 487134755 0.000000e+00 944.0
16 TraesCS2A01G402400 chr6D 78.364 1553 266 57 1052 2576 333349262 333347752 0.000000e+00 942.0
17 TraesCS2A01G402400 chr4A 95.251 358 16 1 3287 3644 86114870 86114514 1.900000e-157 566.0
18 TraesCS2A01G402400 chr4A 94.958 357 17 1 3288 3644 288498265 288497910 3.180000e-155 558.0
19 TraesCS2A01G402400 chr5D 95.184 353 16 1 3289 3641 191670747 191671098 1.140000e-154 556.0
20 TraesCS2A01G402400 chr7A 94.915 354 18 0 3291 3644 196688099 196687746 4.110000e-154 555.0
21 TraesCS2A01G402400 chr1A 94.693 358 18 1 3287 3644 54395239 54394883 4.110000e-154 555.0
22 TraesCS2A01G402400 chr7D 92.000 50 3 1 3143 3191 458539663 458539712 6.530000e-08 69.4
23 TraesCS2A01G402400 chr7D 92.000 50 3 1 3143 3191 458796737 458796688 6.530000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G402400 chr2A 656701390 656705033 3643 False 6730.0 6730 100.0000 1 3644 1 chr2A.!!$F1 3643
1 TraesCS2A01G402400 chr2B 603423126 603428509 5383 False 943.2 3779 89.3544 1 3285 5 chr2B.!!$F1 3284
2 TraesCS2A01G402400 chr2D 512921065 512925367 4302 False 1226.0 3718 91.4000 1 3290 4 chr2D.!!$F3 3289
3 TraesCS2A01G402400 chr6A 472948436 472949961 1525 True 961.0 961 78.5670 1052 2576 1 chr6A.!!$R2 1524
4 TraesCS2A01G402400 chr6B 487133239 487134755 1516 False 944.0 944 78.2440 1049 2576 1 chr6B.!!$F1 1527
5 TraesCS2A01G402400 chr6D 333347752 333349262 1510 True 942.0 942 78.3640 1052 2576 1 chr6D.!!$R1 1524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 192 0.030908 GCAGAGGCGTACTAGCGAAT 59.969 55.0 0.00 0.0 38.18 3.34 F
887 3361 0.108041 TTTCTCGTATCCGGGCCAAC 60.108 55.0 4.39 0.0 33.43 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1016 3490 2.092968 CCATTCTTTCCATCCCTCGTCA 60.093 50.0 0.0 0.0 0.00 4.35 R
2829 5329 0.861837 CGCCACTGATCTAATTCGGC 59.138 55.0 0.0 0.0 34.68 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.079503 GCACATCGTCCTTTCTGGTC 58.920 55.000 0.00 0.00 37.07 4.02
48 49 2.128035 CTGGTCCTCGCATAAATCGAC 58.872 52.381 0.00 0.00 32.08 4.20
106 115 3.399797 TACGATCGCCGGTTCCGTG 62.400 63.158 16.60 2.81 43.93 4.94
149 184 1.925052 GCGTAATGCAGAGGCGTAC 59.075 57.895 0.00 0.00 45.35 3.67
150 185 0.527817 GCGTAATGCAGAGGCGTACT 60.528 55.000 0.00 0.00 45.35 2.73
151 186 1.268896 GCGTAATGCAGAGGCGTACTA 60.269 52.381 0.00 0.00 45.35 1.82
152 187 2.651701 CGTAATGCAGAGGCGTACTAG 58.348 52.381 0.00 0.00 45.35 2.57
153 188 2.395654 GTAATGCAGAGGCGTACTAGC 58.604 52.381 0.00 0.00 45.35 3.42
154 189 0.249073 AATGCAGAGGCGTACTAGCG 60.249 55.000 0.00 0.00 45.35 4.26
155 190 1.101635 ATGCAGAGGCGTACTAGCGA 61.102 55.000 0.00 0.00 45.35 4.93
156 191 1.310216 TGCAGAGGCGTACTAGCGAA 61.310 55.000 0.00 0.00 45.35 4.70
157 192 0.030908 GCAGAGGCGTACTAGCGAAT 59.969 55.000 0.00 0.00 38.18 3.34
202 237 2.486966 GGATCGTTGGCTGCTTGC 59.513 61.111 0.00 0.00 41.94 4.01
203 238 2.099062 GATCGTTGGCTGCTTGCG 59.901 61.111 0.00 1.82 44.05 4.85
204 239 2.358615 ATCGTTGGCTGCTTGCGA 60.359 55.556 12.99 12.99 44.05 5.10
205 240 2.568935 GATCGTTGGCTGCTTGCGAC 62.569 60.000 12.91 1.06 44.05 5.19
206 241 3.648982 CGTTGGCTGCTTGCGACA 61.649 61.111 0.00 0.00 44.05 4.35
207 242 2.253452 GTTGGCTGCTTGCGACAG 59.747 61.111 0.00 0.00 44.05 3.51
299 346 3.223674 GAAGACTCCCAACTTCCCAAA 57.776 47.619 0.00 0.00 37.22 3.28
301 348 1.850345 AGACTCCCAACTTCCCAAACA 59.150 47.619 0.00 0.00 0.00 2.83
305 352 1.501170 TCCCAACTTCCCAAACATCCA 59.499 47.619 0.00 0.00 0.00 3.41
306 353 2.091055 TCCCAACTTCCCAAACATCCAA 60.091 45.455 0.00 0.00 0.00 3.53
307 354 2.037121 CCCAACTTCCCAAACATCCAAC 59.963 50.000 0.00 0.00 0.00 3.77
308 355 2.965147 CCAACTTCCCAAACATCCAACT 59.035 45.455 0.00 0.00 0.00 3.16
309 356 3.387699 CCAACTTCCCAAACATCCAACTT 59.612 43.478 0.00 0.00 0.00 2.66
310 357 4.501400 CCAACTTCCCAAACATCCAACTTC 60.501 45.833 0.00 0.00 0.00 3.01
311 358 3.230976 ACTTCCCAAACATCCAACTTCC 58.769 45.455 0.00 0.00 0.00 3.46
313 360 0.887933 CCCAAACATCCAACTTCCCG 59.112 55.000 0.00 0.00 0.00 5.14
383 493 2.943345 CTCGTCGCAGGTTGCACAC 61.943 63.158 1.69 0.00 45.36 3.82
400 510 2.202570 CACGTACGGAGGAAGCGG 60.203 66.667 21.06 0.00 0.00 5.52
401 511 2.674380 ACGTACGGAGGAAGCGGT 60.674 61.111 21.06 0.00 0.00 5.68
450 563 7.113965 CACGAGGTGTGTATTATACGGTATTTC 59.886 40.741 5.89 0.00 43.88 2.17
508 621 5.062308 GTCTGTATCTAACCTGTTTTCAGCG 59.938 44.000 0.00 0.00 45.76 5.18
651 1093 3.420576 CCGAAAAATAATAATGGTGCGCG 59.579 43.478 0.00 0.00 0.00 6.86
740 1183 1.339438 CCTTGATGTCCACCCTCACAG 60.339 57.143 0.00 0.00 0.00 3.66
847 3319 0.252881 TCCAGGACAGGAGCAAGGAT 60.253 55.000 0.00 0.00 32.77 3.24
851 3323 0.615331 GGACAGGAGCAAGGATCACA 59.385 55.000 0.00 0.00 0.00 3.58
857 3329 2.093235 AGGAGCAAGGATCACAAGCTAC 60.093 50.000 0.00 0.00 36.41 3.58
880 3354 5.047943 ACCTATCATTCCTTTCTCGTATCCG 60.048 44.000 0.00 0.00 0.00 4.18
885 3359 1.682451 CCTTTCTCGTATCCGGGCCA 61.682 60.000 4.39 0.00 33.43 5.36
886 3360 0.177141 CTTTCTCGTATCCGGGCCAA 59.823 55.000 4.39 0.00 33.43 4.52
887 3361 0.108041 TTTCTCGTATCCGGGCCAAC 60.108 55.000 4.39 0.00 33.43 3.77
888 3362 0.974010 TTCTCGTATCCGGGCCAACT 60.974 55.000 4.39 0.00 33.43 3.16
891 3365 2.432300 CGTATCCGGGCCAACTCCT 61.432 63.158 4.39 0.00 0.00 3.69
934 3408 1.606668 CAGCTAGCTCCTTCCTACGAG 59.393 57.143 16.15 0.00 0.00 4.18
973 3447 1.754234 GCCGGCCAATCACCTTCAT 60.754 57.895 18.11 0.00 0.00 2.57
1016 3490 4.552365 CATGGAGATGGCCGCGGT 62.552 66.667 28.70 6.76 0.00 5.68
1047 3521 3.561120 AAAGAATGGCGGCGTCCCA 62.561 57.895 9.84 9.17 36.66 4.37
1140 3614 0.893727 GGGCGTGGATGGTTTCTTGT 60.894 55.000 0.00 0.00 0.00 3.16
1408 3882 6.973474 ACGTTACATCTAGCAGAAGAATGTAC 59.027 38.462 0.00 0.00 0.00 2.90
1409 3883 6.140895 CGTTACATCTAGCAGAAGAATGTACG 59.859 42.308 0.00 0.00 0.00 3.67
1411 3885 6.694877 ACATCTAGCAGAAGAATGTACGTA 57.305 37.500 0.00 0.00 0.00 3.57
1412 3886 6.496571 ACATCTAGCAGAAGAATGTACGTAC 58.503 40.000 18.90 18.90 0.00 3.67
1414 3888 7.498239 ACATCTAGCAGAAGAATGTACGTACTA 59.502 37.037 25.12 12.85 0.00 1.82
1420 3894 6.530534 GCAGAAGAATGTACGTACTATGTTGT 59.469 38.462 25.12 14.10 0.00 3.32
1583 4062 4.728102 CAACGCCGGCCACGAGTA 62.728 66.667 23.46 0.00 44.60 2.59
2355 4852 1.303799 TGACTACGTCGTGGAGCCTC 61.304 60.000 16.24 3.05 34.95 4.70
2491 4991 0.597637 CTTCACGGTCACTTCGCTGT 60.598 55.000 0.00 0.00 0.00 4.40
2609 5109 3.372060 CTTCAGAAACCGAAACCAAAGC 58.628 45.455 0.00 0.00 0.00 3.51
2640 5140 1.444553 CTCGGACGAGGAAGCACAC 60.445 63.158 13.59 0.00 38.51 3.82
2644 5144 0.389166 GGACGAGGAAGCACACTGAG 60.389 60.000 0.00 0.00 0.00 3.35
2650 5150 0.035630 GGAAGCACACTGAGCAGGAT 60.036 55.000 2.20 0.00 0.00 3.24
2651 5151 1.612726 GGAAGCACACTGAGCAGGATT 60.613 52.381 2.20 0.00 0.00 3.01
2652 5152 2.355108 GGAAGCACACTGAGCAGGATTA 60.355 50.000 2.20 0.00 0.00 1.75
2664 5164 6.014242 ACTGAGCAGGATTATTAATCGGATCA 60.014 38.462 18.44 18.44 38.82 2.92
2744 5244 3.680525 CGATGGCGTTCGAGTGAG 58.319 61.111 3.84 0.00 41.62 3.51
2751 5251 1.609840 GCGTTCGAGTGAGCTGACAC 61.610 60.000 5.98 1.24 40.60 3.67
2829 5329 2.047844 CCAGCGGTGACAGAGTGG 60.048 66.667 17.83 0.00 0.00 4.00
2834 5334 2.741092 GGTGACAGAGTGGCCGAA 59.259 61.111 0.00 0.00 0.00 4.30
2852 5352 4.556233 CCGAATTAGATCAGTGGCGAATA 58.444 43.478 0.00 0.00 0.00 1.75
2914 5414 3.529734 TGCATAATAAGTCCCCTCCCAAA 59.470 43.478 0.00 0.00 0.00 3.28
2980 5480 9.586435 TCTACAATACAGAGTGATTACAATGTG 57.414 33.333 0.00 0.00 40.34 3.21
2987 5487 7.105588 ACAGAGTGATTACAATGTGCTTATGA 58.894 34.615 0.00 0.00 38.59 2.15
2990 5490 9.013229 AGAGTGATTACAATGTGCTTATGAAAA 57.987 29.630 0.00 0.00 0.00 2.29
3009 5509 7.534085 TGAAAATCTACACATCGTTATGGAC 57.466 36.000 0.00 0.00 37.43 4.02
3082 5584 3.436704 TGAGCAAAAATCTCCACATCGTC 59.563 43.478 0.00 0.00 0.00 4.20
3087 5589 5.233476 GCAAAAATCTCCACATCGTCGTATA 59.767 40.000 0.00 0.00 0.00 1.47
3091 5593 2.615447 TCTCCACATCGTCGTATACACC 59.385 50.000 3.32 0.00 0.00 4.16
3098 5600 5.346551 CACATCGTCGTATACACCTGAAAAA 59.653 40.000 3.32 0.00 0.00 1.94
3099 5601 6.035650 CACATCGTCGTATACACCTGAAAAAT 59.964 38.462 3.32 0.00 0.00 1.82
3101 5603 4.794762 TCGTCGTATACACCTGAAAAATCG 59.205 41.667 3.32 0.00 0.00 3.34
3102 5604 4.547587 CGTCGTATACACCTGAAAAATCGC 60.548 45.833 3.32 0.00 0.00 4.58
3103 5605 3.866910 TCGTATACACCTGAAAAATCGCC 59.133 43.478 3.32 0.00 0.00 5.54
3186 5721 7.227116 ACAAGTTTTCTATGTGCATGCAAAATT 59.773 29.630 24.58 13.60 0.00 1.82
3192 5727 6.631962 TCTATGTGCATGCAAAATTTCATGA 58.368 32.000 24.58 15.68 41.82 3.07
3194 5729 4.377897 TGTGCATGCAAAATTTCATGACA 58.622 34.783 24.58 8.60 41.82 3.58
3216 5751 0.758734 TATGACAATGGGGGAGCTCG 59.241 55.000 7.83 0.00 0.00 5.03
3217 5752 0.982852 ATGACAATGGGGGAGCTCGA 60.983 55.000 7.83 0.00 0.00 4.04
3298 5833 3.886324 TTTTTCCCACTGTCGGTGT 57.114 47.368 10.90 0.00 43.94 4.16
3299 5834 1.670791 TTTTTCCCACTGTCGGTGTC 58.329 50.000 10.90 0.00 43.94 3.67
3300 5835 0.542333 TTTTCCCACTGTCGGTGTCA 59.458 50.000 10.90 0.00 43.94 3.58
3301 5836 0.542333 TTTCCCACTGTCGGTGTCAA 59.458 50.000 10.90 0.34 43.94 3.18
3302 5837 0.542333 TTCCCACTGTCGGTGTCAAA 59.458 50.000 10.90 0.00 43.94 2.69
3303 5838 0.542333 TCCCACTGTCGGTGTCAAAA 59.458 50.000 10.90 0.00 43.94 2.44
3304 5839 1.142060 TCCCACTGTCGGTGTCAAAAT 59.858 47.619 10.90 0.00 43.94 1.82
3305 5840 1.535462 CCCACTGTCGGTGTCAAAATC 59.465 52.381 10.90 0.00 43.94 2.17
3306 5841 1.194547 CCACTGTCGGTGTCAAAATCG 59.805 52.381 10.90 0.00 43.94 3.34
3307 5842 1.194547 CACTGTCGGTGTCAAAATCGG 59.805 52.381 3.41 0.00 40.79 4.18
3308 5843 0.165944 CTGTCGGTGTCAAAATCGGC 59.834 55.000 0.00 0.00 0.00 5.54
3309 5844 1.131826 GTCGGTGTCAAAATCGGCG 59.868 57.895 0.00 0.00 0.00 6.46
3310 5845 2.030401 TCGGTGTCAAAATCGGCGG 61.030 57.895 7.21 0.00 0.00 6.13
3311 5846 2.030401 CGGTGTCAAAATCGGCGGA 61.030 57.895 7.21 0.00 0.00 5.54
3312 5847 1.366111 CGGTGTCAAAATCGGCGGAT 61.366 55.000 7.21 0.04 0.00 4.18
3313 5848 0.377203 GGTGTCAAAATCGGCGGATC 59.623 55.000 7.21 0.00 30.81 3.36
3314 5849 1.369625 GTGTCAAAATCGGCGGATCT 58.630 50.000 7.21 0.00 30.81 2.75
3315 5850 1.327764 GTGTCAAAATCGGCGGATCTC 59.672 52.381 7.21 0.00 30.81 2.75
3316 5851 0.577269 GTCAAAATCGGCGGATCTCG 59.423 55.000 7.21 0.00 42.76 4.04
3317 5852 0.529773 TCAAAATCGGCGGATCTCGG 60.530 55.000 7.21 0.00 39.69 4.63
3318 5853 1.227556 AAAATCGGCGGATCTCGGG 60.228 57.895 7.21 0.00 39.69 5.14
3319 5854 1.968050 AAAATCGGCGGATCTCGGGT 61.968 55.000 7.21 0.00 39.69 5.28
3320 5855 1.111116 AAATCGGCGGATCTCGGGTA 61.111 55.000 7.21 0.00 39.69 3.69
3321 5856 1.524863 AATCGGCGGATCTCGGGTAG 61.525 60.000 7.21 0.00 39.69 3.18
3322 5857 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
3323 5858 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
3324 5859 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
3325 5860 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
3326 5861 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
3327 5862 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
3328 5863 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
3329 5864 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
3338 5873 2.931921 GGGGGTCCCAAACTGTGT 59.068 61.111 10.98 0.00 44.65 3.72
3339 5874 1.530655 GGGGGTCCCAAACTGTGTG 60.531 63.158 10.98 0.00 44.65 3.82
3340 5875 1.229076 GGGGTCCCAAACTGTGTGT 59.771 57.895 10.98 0.00 35.81 3.72
3341 5876 0.822121 GGGGTCCCAAACTGTGTGTC 60.822 60.000 10.98 0.00 35.81 3.67
3342 5877 0.182775 GGGTCCCAAACTGTGTGTCT 59.817 55.000 1.78 0.00 0.00 3.41
3343 5878 1.418637 GGGTCCCAAACTGTGTGTCTA 59.581 52.381 1.78 0.00 0.00 2.59
3344 5879 2.550208 GGGTCCCAAACTGTGTGTCTAG 60.550 54.545 1.78 0.00 0.00 2.43
3345 5880 2.550208 GGTCCCAAACTGTGTGTCTAGG 60.550 54.545 0.00 0.00 0.00 3.02
3346 5881 2.367567 GTCCCAAACTGTGTGTCTAGGA 59.632 50.000 0.00 0.00 0.00 2.94
3347 5882 3.008049 GTCCCAAACTGTGTGTCTAGGAT 59.992 47.826 0.00 0.00 0.00 3.24
3348 5883 3.260884 TCCCAAACTGTGTGTCTAGGATC 59.739 47.826 0.00 0.00 0.00 3.36
3349 5884 3.254060 CCAAACTGTGTGTCTAGGATCG 58.746 50.000 0.00 0.00 0.00 3.69
3350 5885 3.056821 CCAAACTGTGTGTCTAGGATCGA 60.057 47.826 0.00 0.00 0.00 3.59
3351 5886 4.382040 CCAAACTGTGTGTCTAGGATCGAT 60.382 45.833 0.00 0.00 0.00 3.59
3352 5887 4.377839 AACTGTGTGTCTAGGATCGATG 57.622 45.455 0.54 0.00 0.00 3.84
3353 5888 2.690497 ACTGTGTGTCTAGGATCGATGG 59.310 50.000 0.54 0.00 0.00 3.51
3354 5889 2.690497 CTGTGTGTCTAGGATCGATGGT 59.310 50.000 0.54 0.00 0.00 3.55
3355 5890 3.883489 CTGTGTGTCTAGGATCGATGGTA 59.117 47.826 0.54 0.00 0.00 3.25
3356 5891 4.274978 TGTGTGTCTAGGATCGATGGTAA 58.725 43.478 0.54 0.00 0.00 2.85
3357 5892 4.097437 TGTGTGTCTAGGATCGATGGTAAC 59.903 45.833 0.54 0.00 0.00 2.50
3368 5903 4.123571 TGGTAACAGGAGACGGGG 57.876 61.111 0.00 0.00 46.17 5.73
3369 5904 1.611261 TGGTAACAGGAGACGGGGG 60.611 63.158 0.00 0.00 46.17 5.40
3370 5905 1.305549 GGTAACAGGAGACGGGGGA 60.306 63.158 0.00 0.00 0.00 4.81
3371 5906 1.611474 GGTAACAGGAGACGGGGGAC 61.611 65.000 0.00 0.00 0.00 4.46
3372 5907 0.901580 GTAACAGGAGACGGGGGACA 60.902 60.000 0.00 0.00 0.00 4.02
3373 5908 0.901580 TAACAGGAGACGGGGGACAC 60.902 60.000 0.00 0.00 0.00 3.67
3374 5909 3.760035 CAGGAGACGGGGGACACG 61.760 72.222 0.00 0.00 37.36 4.49
3375 5910 3.975591 AGGAGACGGGGGACACGA 61.976 66.667 0.00 0.00 34.93 4.35
3376 5911 2.758737 GGAGACGGGGGACACGAT 60.759 66.667 0.00 0.00 34.93 3.73
3377 5912 2.494918 GAGACGGGGGACACGATG 59.505 66.667 0.00 0.00 34.93 3.84
3378 5913 2.283676 AGACGGGGGACACGATGT 60.284 61.111 0.00 0.00 34.93 3.06
3379 5914 1.885163 GAGACGGGGGACACGATGTT 61.885 60.000 0.00 0.00 34.93 2.71
3380 5915 1.004200 GACGGGGGACACGATGTTT 60.004 57.895 0.00 0.00 34.93 2.83
3381 5916 0.247185 GACGGGGGACACGATGTTTA 59.753 55.000 0.00 0.00 34.93 2.01
3382 5917 0.037046 ACGGGGGACACGATGTTTAC 60.037 55.000 0.00 0.00 34.93 2.01
3383 5918 0.741927 CGGGGGACACGATGTTTACC 60.742 60.000 0.00 0.00 0.00 2.85
3384 5919 0.393402 GGGGGACACGATGTTTACCC 60.393 60.000 13.15 13.15 37.95 3.69
3385 5920 0.325602 GGGGACACGATGTTTACCCA 59.674 55.000 0.00 0.00 38.30 4.51
3386 5921 1.677820 GGGGACACGATGTTTACCCAG 60.678 57.143 0.00 0.00 38.30 4.45
3387 5922 1.677820 GGGACACGATGTTTACCCAGG 60.678 57.143 0.00 0.00 37.50 4.45
3388 5923 1.002773 GGACACGATGTTTACCCAGGT 59.997 52.381 0.00 0.00 0.00 4.00
3389 5924 2.551504 GGACACGATGTTTACCCAGGTT 60.552 50.000 0.00 0.00 0.00 3.50
3390 5925 2.740447 GACACGATGTTTACCCAGGTTC 59.260 50.000 0.00 0.00 0.00 3.62
3391 5926 1.730064 CACGATGTTTACCCAGGTTCG 59.270 52.381 6.36 6.36 31.96 3.95
3392 5927 1.338389 ACGATGTTTACCCAGGTTCGG 60.338 52.381 11.39 0.00 30.52 4.30
3400 5935 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
3401 5936 2.685380 CAGGTTCGGGCCCTCTCT 60.685 66.667 22.43 9.12 0.00 3.10
3402 5937 1.381327 CAGGTTCGGGCCCTCTCTA 60.381 63.158 22.43 0.00 0.00 2.43
3403 5938 0.760945 CAGGTTCGGGCCCTCTCTAT 60.761 60.000 22.43 0.00 0.00 1.98
3404 5939 0.760945 AGGTTCGGGCCCTCTCTATG 60.761 60.000 22.43 1.43 0.00 2.23
3405 5940 1.749033 GTTCGGGCCCTCTCTATGG 59.251 63.158 22.43 0.54 0.00 2.74
3406 5941 0.759436 GTTCGGGCCCTCTCTATGGA 60.759 60.000 22.43 3.53 0.00 3.41
3407 5942 0.470080 TTCGGGCCCTCTCTATGGAG 60.470 60.000 22.43 0.00 40.73 3.86
3417 5952 5.278127 CCTCTCTATGGAGGTAATACCCT 57.722 47.826 5.71 0.00 45.65 4.34
3418 5953 6.404426 CCTCTCTATGGAGGTAATACCCTA 57.596 45.833 5.71 0.00 45.65 3.53
3419 5954 6.189133 CCTCTCTATGGAGGTAATACCCTAC 58.811 48.000 5.71 0.00 45.65 3.18
3420 5955 5.813383 TCTCTATGGAGGTAATACCCTACG 58.187 45.833 5.71 0.00 38.41 3.51
3421 5956 5.311649 TCTCTATGGAGGTAATACCCTACGT 59.688 44.000 5.71 0.00 38.41 3.57
3422 5957 5.564550 TCTATGGAGGTAATACCCTACGTC 58.435 45.833 5.71 0.00 38.41 4.34
3424 5959 3.235750 GGAGGTAATACCCTACGTCCT 57.764 52.381 5.71 0.00 46.43 3.85
3425 5960 2.889678 GGAGGTAATACCCTACGTCCTG 59.110 54.545 5.71 0.00 46.43 3.86
3426 5961 2.295629 GAGGTAATACCCTACGTCCTGC 59.704 54.545 5.71 0.00 39.75 4.85
3427 5962 2.091444 AGGTAATACCCTACGTCCTGCT 60.091 50.000 5.71 0.00 39.75 4.24
3428 5963 2.697229 GGTAATACCCTACGTCCTGCTT 59.303 50.000 0.00 0.00 30.04 3.91
3429 5964 2.981859 AATACCCTACGTCCTGCTTG 57.018 50.000 0.00 0.00 0.00 4.01
3430 5965 2.154567 ATACCCTACGTCCTGCTTGA 57.845 50.000 0.00 0.00 0.00 3.02
3431 5966 2.154567 TACCCTACGTCCTGCTTGAT 57.845 50.000 0.00 0.00 0.00 2.57
3432 5967 1.276622 ACCCTACGTCCTGCTTGATT 58.723 50.000 0.00 0.00 0.00 2.57
3433 5968 1.066143 ACCCTACGTCCTGCTTGATTG 60.066 52.381 0.00 0.00 0.00 2.67
3434 5969 1.207089 CCCTACGTCCTGCTTGATTGA 59.793 52.381 0.00 0.00 0.00 2.57
3435 5970 2.158900 CCCTACGTCCTGCTTGATTGAT 60.159 50.000 0.00 0.00 0.00 2.57
3436 5971 3.126831 CCTACGTCCTGCTTGATTGATC 58.873 50.000 0.00 0.00 0.00 2.92
3437 5972 3.181471 CCTACGTCCTGCTTGATTGATCT 60.181 47.826 0.00 0.00 0.00 2.75
3438 5973 3.340814 ACGTCCTGCTTGATTGATCTT 57.659 42.857 0.00 0.00 0.00 2.40
3439 5974 3.005554 ACGTCCTGCTTGATTGATCTTG 58.994 45.455 0.00 0.00 0.00 3.02
3440 5975 3.264947 CGTCCTGCTTGATTGATCTTGA 58.735 45.455 0.00 0.00 0.00 3.02
3441 5976 3.875727 CGTCCTGCTTGATTGATCTTGAT 59.124 43.478 0.00 0.00 0.00 2.57
3442 5977 4.260661 CGTCCTGCTTGATTGATCTTGATG 60.261 45.833 0.00 0.00 0.00 3.07
3443 5978 4.880120 GTCCTGCTTGATTGATCTTGATGA 59.120 41.667 0.00 0.00 0.00 2.92
3444 5979 5.356190 GTCCTGCTTGATTGATCTTGATGAA 59.644 40.000 0.00 0.00 0.00 2.57
3445 5980 6.039493 GTCCTGCTTGATTGATCTTGATGAAT 59.961 38.462 0.00 0.00 0.00 2.57
3446 5981 7.228108 GTCCTGCTTGATTGATCTTGATGAATA 59.772 37.037 0.00 0.00 0.00 1.75
3447 5982 7.942894 TCCTGCTTGATTGATCTTGATGAATAT 59.057 33.333 0.00 0.00 0.00 1.28
3448 5983 8.023706 CCTGCTTGATTGATCTTGATGAATATG 58.976 37.037 0.00 0.00 0.00 1.78
3449 5984 8.685838 TGCTTGATTGATCTTGATGAATATGA 57.314 30.769 0.00 0.00 0.00 2.15
3450 5985 8.784043 TGCTTGATTGATCTTGATGAATATGAG 58.216 33.333 0.00 0.00 0.00 2.90
3451 5986 8.784994 GCTTGATTGATCTTGATGAATATGAGT 58.215 33.333 0.00 0.00 0.00 3.41
3453 5988 9.623000 TTGATTGATCTTGATGAATATGAGTGT 57.377 29.630 0.00 0.00 0.00 3.55
3454 5989 9.623000 TGATTGATCTTGATGAATATGAGTGTT 57.377 29.630 0.00 0.00 0.00 3.32
3457 5992 9.889128 TTGATCTTGATGAATATGAGTGTTACA 57.111 29.630 0.00 0.00 0.00 2.41
3458 5993 9.889128 TGATCTTGATGAATATGAGTGTTACAA 57.111 29.630 0.00 0.00 0.00 2.41
3461 5996 9.942850 TCTTGATGAATATGAGTGTTACAAGAA 57.057 29.630 0.00 0.00 37.59 2.52
3479 6014 4.657436 AGAATTGATCTACCACGAGACC 57.343 45.455 0.00 0.00 36.32 3.85
3480 6015 3.066900 AGAATTGATCTACCACGAGACCG 59.933 47.826 0.00 0.00 36.32 4.79
3481 6016 5.407854 AGAATTGATCTACCACGAGACCGT 61.408 45.833 0.00 0.00 43.11 4.83
3482 6017 6.149070 AGAATTGATCTACCACGAGACCGTA 61.149 44.000 0.00 0.00 41.41 4.02
3483 6018 7.577361 AGAATTGATCTACCACGAGACCGTAA 61.577 42.308 0.00 0.00 41.41 3.18
3484 6019 8.817716 AGAATTGATCTACCACGAGACCGTAAT 61.818 40.741 0.00 0.00 41.41 1.89
3493 6028 2.199236 CGAGACCGTAATGGCTAAACC 58.801 52.381 0.00 0.00 43.94 3.27
3494 6029 2.558378 GAGACCGTAATGGCTAAACCC 58.442 52.381 0.00 0.00 43.94 4.11
3495 6030 2.169978 GAGACCGTAATGGCTAAACCCT 59.830 50.000 0.00 0.00 43.94 4.34
3496 6031 3.377573 AGACCGTAATGGCTAAACCCTA 58.622 45.455 0.00 0.00 43.94 3.53
3497 6032 3.387050 AGACCGTAATGGCTAAACCCTAG 59.613 47.826 0.00 0.00 43.94 3.02
3498 6033 3.377573 ACCGTAATGGCTAAACCCTAGA 58.622 45.455 0.00 0.00 43.94 2.43
3499 6034 3.776417 ACCGTAATGGCTAAACCCTAGAA 59.224 43.478 0.00 0.00 43.94 2.10
3500 6035 4.141779 ACCGTAATGGCTAAACCCTAGAAG 60.142 45.833 0.00 0.00 43.94 2.85
3501 6036 4.141779 CCGTAATGGCTAAACCCTAGAAGT 60.142 45.833 0.00 0.00 37.83 3.01
3502 6037 5.048507 CGTAATGGCTAAACCCTAGAAGTC 58.951 45.833 0.00 0.00 37.83 3.01
3503 6038 5.163437 CGTAATGGCTAAACCCTAGAAGTCT 60.163 44.000 0.00 0.00 37.83 3.24
3504 6039 6.040166 CGTAATGGCTAAACCCTAGAAGTCTA 59.960 42.308 0.00 0.00 37.83 2.59
3505 6040 6.886178 AATGGCTAAACCCTAGAAGTCTAA 57.114 37.500 0.00 0.00 37.83 2.10
3506 6041 5.672421 TGGCTAAACCCTAGAAGTCTAAC 57.328 43.478 0.00 0.00 37.83 2.34
3507 6042 4.468868 TGGCTAAACCCTAGAAGTCTAACC 59.531 45.833 0.00 0.00 37.83 2.85
3508 6043 4.715792 GGCTAAACCCTAGAAGTCTAACCT 59.284 45.833 0.00 0.00 0.00 3.50
3509 6044 5.395435 GGCTAAACCCTAGAAGTCTAACCTG 60.395 48.000 0.00 0.00 0.00 4.00
3510 6045 5.187381 GCTAAACCCTAGAAGTCTAACCTGT 59.813 44.000 0.00 0.00 0.00 4.00
3511 6046 6.379417 GCTAAACCCTAGAAGTCTAACCTGTA 59.621 42.308 0.00 0.00 0.00 2.74
3512 6047 7.069702 GCTAAACCCTAGAAGTCTAACCTGTAT 59.930 40.741 0.00 0.00 0.00 2.29
3513 6048 6.793505 AACCCTAGAAGTCTAACCTGTATG 57.206 41.667 0.00 0.00 0.00 2.39
3514 6049 6.088541 ACCCTAGAAGTCTAACCTGTATGA 57.911 41.667 0.00 0.00 0.00 2.15
3515 6050 5.892686 ACCCTAGAAGTCTAACCTGTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
3516 6051 6.130569 CCCTAGAAGTCTAACCTGTATGACT 58.869 44.000 0.00 0.00 40.95 3.41
3517 6052 7.092083 ACCCTAGAAGTCTAACCTGTATGACTA 60.092 40.741 0.00 0.00 38.63 2.59
3518 6053 7.945664 CCCTAGAAGTCTAACCTGTATGACTAT 59.054 40.741 0.00 0.00 38.63 2.12
3519 6054 8.788806 CCTAGAAGTCTAACCTGTATGACTATG 58.211 40.741 0.00 0.00 38.63 2.23
3520 6055 7.589958 AGAAGTCTAACCTGTATGACTATGG 57.410 40.000 0.00 0.00 38.63 2.74
3521 6056 7.126733 AGAAGTCTAACCTGTATGACTATGGT 58.873 38.462 0.00 0.00 38.63 3.55
3522 6057 8.280084 AGAAGTCTAACCTGTATGACTATGGTA 58.720 37.037 0.00 0.00 38.63 3.25
3523 6058 8.834004 AAGTCTAACCTGTATGACTATGGTAA 57.166 34.615 0.00 0.00 38.63 2.85
3524 6059 9.435570 AAGTCTAACCTGTATGACTATGGTAAT 57.564 33.333 0.00 0.00 38.63 1.89
3543 6078 9.886132 ATGGTAATAAGTATATCATTTCCGGAC 57.114 33.333 1.83 0.00 0.00 4.79
3544 6079 9.096823 TGGTAATAAGTATATCATTTCCGGACT 57.903 33.333 1.83 0.00 0.00 3.85
3545 6080 9.367444 GGTAATAAGTATATCATTTCCGGACTG 57.633 37.037 1.83 5.06 0.00 3.51
3548 6083 5.470047 AGTATATCATTTCCGGACTGACC 57.530 43.478 16.16 6.88 0.00 4.02
3549 6084 3.771577 ATATCATTTCCGGACTGACCC 57.228 47.619 16.16 0.00 34.64 4.46
3550 6085 0.546598 ATCATTTCCGGACTGACCCC 59.453 55.000 16.16 0.00 34.64 4.95
3551 6086 0.546747 TCATTTCCGGACTGACCCCT 60.547 55.000 1.83 0.00 34.64 4.79
3552 6087 0.107654 CATTTCCGGACTGACCCCTC 60.108 60.000 1.83 0.00 34.64 4.30
3553 6088 1.272554 ATTTCCGGACTGACCCCTCC 61.273 60.000 1.83 0.00 34.64 4.30
3567 6102 4.203342 ACCCCTCCGGTTTATATAGACA 57.797 45.455 0.00 0.00 45.36 3.41
3568 6103 3.899980 ACCCCTCCGGTTTATATAGACAC 59.100 47.826 0.00 0.00 45.36 3.67
3569 6104 3.260128 CCCCTCCGGTTTATATAGACACC 59.740 52.174 0.00 2.59 0.00 4.16
3575 6110 4.532314 GGTTTATATAGACACCGAGGGG 57.468 50.000 5.83 0.00 40.11 4.79
3576 6111 4.154942 GGTTTATATAGACACCGAGGGGA 58.845 47.826 0.00 0.00 36.97 4.81
3577 6112 4.776308 GGTTTATATAGACACCGAGGGGAT 59.224 45.833 0.00 0.00 36.97 3.85
3578 6113 5.105432 GGTTTATATAGACACCGAGGGGATC 60.105 48.000 0.00 0.00 36.97 3.36
3579 6114 5.531753 TTATATAGACACCGAGGGGATCT 57.468 43.478 0.00 0.17 36.62 2.75
3580 6115 6.647461 TTATATAGACACCGAGGGGATCTA 57.353 41.667 0.00 2.51 38.24 1.98
3581 6116 2.953284 TAGACACCGAGGGGATCTAG 57.047 55.000 0.00 0.00 35.11 2.43
3582 6117 0.186386 AGACACCGAGGGGATCTAGG 59.814 60.000 0.00 0.00 43.00 3.02
3583 6118 0.828343 GACACCGAGGGGATCTAGGG 60.828 65.000 0.00 0.00 41.84 3.53
3584 6119 1.233369 CACCGAGGGGATCTAGGGT 59.767 63.158 0.00 0.00 41.84 4.34
3585 6120 0.398664 CACCGAGGGGATCTAGGGTT 60.399 60.000 0.00 0.00 41.84 4.11
3586 6121 0.342313 ACCGAGGGGATCTAGGGTTT 59.658 55.000 0.00 0.00 41.84 3.27
3587 6122 1.577242 ACCGAGGGGATCTAGGGTTTA 59.423 52.381 0.00 0.00 41.84 2.01
3588 6123 1.969208 CCGAGGGGATCTAGGGTTTAC 59.031 57.143 0.00 0.00 35.00 2.01
3589 6124 2.674420 CGAGGGGATCTAGGGTTTACA 58.326 52.381 0.00 0.00 0.00 2.41
3590 6125 3.240302 CGAGGGGATCTAGGGTTTACAT 58.760 50.000 0.00 0.00 0.00 2.29
3591 6126 4.413760 CGAGGGGATCTAGGGTTTACATA 58.586 47.826 0.00 0.00 0.00 2.29
3592 6127 4.463186 CGAGGGGATCTAGGGTTTACATAG 59.537 50.000 0.00 0.00 0.00 2.23
3593 6128 5.652324 GAGGGGATCTAGGGTTTACATAGA 58.348 45.833 0.00 0.00 0.00 1.98
3594 6129 5.656420 AGGGGATCTAGGGTTTACATAGAG 58.344 45.833 0.00 0.00 0.00 2.43
3595 6130 5.138123 AGGGGATCTAGGGTTTACATAGAGT 59.862 44.000 0.00 0.00 0.00 3.24
3596 6131 5.481122 GGGGATCTAGGGTTTACATAGAGTC 59.519 48.000 0.00 0.00 0.00 3.36
3597 6132 5.183522 GGGATCTAGGGTTTACATAGAGTCG 59.816 48.000 0.00 0.00 0.00 4.18
3598 6133 5.183522 GGATCTAGGGTTTACATAGAGTCGG 59.816 48.000 0.00 0.00 0.00 4.79
3599 6134 5.121380 TCTAGGGTTTACATAGAGTCGGT 57.879 43.478 0.00 0.00 0.00 4.69
3600 6135 5.513233 TCTAGGGTTTACATAGAGTCGGTT 58.487 41.667 0.00 0.00 0.00 4.44
3601 6136 6.662755 TCTAGGGTTTACATAGAGTCGGTTA 58.337 40.000 0.00 0.00 0.00 2.85
3602 6137 5.588958 AGGGTTTACATAGAGTCGGTTAC 57.411 43.478 0.00 0.00 0.00 2.50
3603 6138 5.018809 AGGGTTTACATAGAGTCGGTTACA 58.981 41.667 0.00 0.00 0.00 2.41
3604 6139 5.659971 AGGGTTTACATAGAGTCGGTTACAT 59.340 40.000 0.00 0.00 0.00 2.29
3605 6140 6.835488 AGGGTTTACATAGAGTCGGTTACATA 59.165 38.462 0.00 0.00 0.00 2.29
3606 6141 7.342799 AGGGTTTACATAGAGTCGGTTACATAA 59.657 37.037 0.00 0.00 0.00 1.90
3607 6142 7.650903 GGGTTTACATAGAGTCGGTTACATAAG 59.349 40.741 0.00 0.00 0.00 1.73
3608 6143 8.408601 GGTTTACATAGAGTCGGTTACATAAGA 58.591 37.037 0.00 0.00 0.00 2.10
3609 6144 9.793252 GTTTACATAGAGTCGGTTACATAAGAA 57.207 33.333 0.00 0.00 0.00 2.52
3611 6146 7.040473 ACATAGAGTCGGTTACATAAGAAGG 57.960 40.000 0.00 0.00 0.00 3.46
3612 6147 6.832384 ACATAGAGTCGGTTACATAAGAAGGA 59.168 38.462 0.00 0.00 0.00 3.36
3613 6148 7.341256 ACATAGAGTCGGTTACATAAGAAGGAA 59.659 37.037 0.00 0.00 0.00 3.36
3614 6149 6.793505 AGAGTCGGTTACATAAGAAGGAAT 57.206 37.500 0.00 0.00 0.00 3.01
3615 6150 6.807789 AGAGTCGGTTACATAAGAAGGAATC 58.192 40.000 0.00 0.00 0.00 2.52
3616 6151 6.608002 AGAGTCGGTTACATAAGAAGGAATCT 59.392 38.462 0.00 0.00 41.32 2.40
3618 6153 7.266400 AGTCGGTTACATAAGAAGGAATCTTC 58.734 38.462 0.00 0.00 45.42 2.87
3619 6154 7.039882 GTCGGTTACATAAGAAGGAATCTTCA 58.960 38.462 8.56 0.00 45.42 3.02
3620 6155 7.711339 GTCGGTTACATAAGAAGGAATCTTCAT 59.289 37.037 8.56 0.00 45.42 2.57
3621 6156 8.920174 TCGGTTACATAAGAAGGAATCTTCATA 58.080 33.333 8.56 2.02 45.42 2.15
3622 6157 9.197694 CGGTTACATAAGAAGGAATCTTCATAG 57.802 37.037 8.56 0.00 45.42 2.23
3625 6160 9.967346 TTACATAAGAAGGAATCTTCATAGTCG 57.033 33.333 8.56 0.00 45.42 4.18
3626 6161 7.437748 ACATAAGAAGGAATCTTCATAGTCGG 58.562 38.462 8.56 0.00 45.42 4.79
3627 6162 5.941555 AAGAAGGAATCTTCATAGTCGGT 57.058 39.130 8.56 0.00 45.42 4.69
3628 6163 5.908341 AAGAAGGAATCTTCATAGTCGGTC 58.092 41.667 8.56 0.00 45.42 4.79
3629 6164 4.623002 GAAGGAATCTTCATAGTCGGTCC 58.377 47.826 1.70 0.00 46.45 4.46
3630 6165 2.623889 AGGAATCTTCATAGTCGGTCCG 59.376 50.000 4.39 4.39 0.00 4.79
3631 6166 2.395654 GAATCTTCATAGTCGGTCCGC 58.604 52.381 6.34 1.61 0.00 5.54
3632 6167 0.674534 ATCTTCATAGTCGGTCCGCC 59.325 55.000 6.34 0.00 0.00 6.13
3633 6168 0.681887 TCTTCATAGTCGGTCCGCCA 60.682 55.000 6.34 0.00 34.09 5.69
3634 6169 0.174845 CTTCATAGTCGGTCCGCCAA 59.825 55.000 6.34 0.00 34.09 4.52
3635 6170 0.609151 TTCATAGTCGGTCCGCCAAA 59.391 50.000 6.34 0.00 34.09 3.28
3636 6171 0.108520 TCATAGTCGGTCCGCCAAAC 60.109 55.000 6.34 0.00 34.09 2.93
3637 6172 0.108329 CATAGTCGGTCCGCCAAACT 60.108 55.000 6.34 7.51 35.42 2.66
3638 6173 0.611714 ATAGTCGGTCCGCCAAACTT 59.388 50.000 6.34 0.00 33.85 2.66
3639 6174 0.320073 TAGTCGGTCCGCCAAACTTG 60.320 55.000 6.34 0.00 33.85 3.16
3640 6175 2.975799 TCGGTCCGCCAAACTTGC 60.976 61.111 6.34 0.00 34.09 4.01
3641 6176 2.978010 CGGTCCGCCAAACTTGCT 60.978 61.111 0.00 0.00 34.09 3.91
3642 6177 2.551912 CGGTCCGCCAAACTTGCTT 61.552 57.895 0.00 0.00 34.09 3.91
3643 6178 1.739667 GGTCCGCCAAACTTGCTTT 59.260 52.632 0.00 0.00 34.09 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.570813 TGCAGTCGATTTATGCGAGG 58.429 50.000 9.36 0.00 42.92 4.63
48 49 1.815003 AGGCTCGAAAGGAAAATGCAG 59.185 47.619 0.00 0.00 0.00 4.41
98 107 1.376037 CAGAGAAGCCCACGGAACC 60.376 63.158 0.00 0.00 0.00 3.62
106 115 4.202253 ACAAATTTTGGTTCAGAGAAGCCC 60.202 41.667 13.42 0.00 34.12 5.19
149 184 1.515172 CGTCGATCGCTATTCGCTAG 58.485 55.000 11.09 0.00 36.56 3.42
150 185 0.165295 CCGTCGATCGCTATTCGCTA 59.835 55.000 11.09 0.00 36.56 4.26
151 186 1.082038 CCGTCGATCGCTATTCGCT 60.082 57.895 11.09 0.00 36.56 4.93
152 187 2.708059 GCCGTCGATCGCTATTCGC 61.708 63.158 11.09 2.05 36.56 4.70
153 188 2.418333 CGCCGTCGATCGCTATTCG 61.418 63.158 11.09 9.44 38.10 3.34
154 189 2.708059 GCGCCGTCGATCGCTATTC 61.708 63.158 19.50 0.00 46.92 1.75
155 190 2.729862 GCGCCGTCGATCGCTATT 60.730 61.111 19.50 0.00 46.92 1.73
202 237 3.343788 GAGACCCTGTCGGCTGTCG 62.344 68.421 0.00 0.00 37.67 4.35
203 238 2.574399 GAGACCCTGTCGGCTGTC 59.426 66.667 0.00 0.00 37.67 3.51
204 239 2.997897 GGAGACCCTGTCGGCTGT 60.998 66.667 0.00 0.00 37.67 4.40
205 240 4.135153 CGGAGACCCTGTCGGCTG 62.135 72.222 0.00 0.00 37.67 4.85
286 333 2.008242 TGGATGTTTGGGAAGTTGGG 57.992 50.000 0.00 0.00 0.00 4.12
299 346 0.321298 CCGTTCGGGAAGTTGGATGT 60.321 55.000 3.04 0.00 38.47 3.06
301 348 1.376812 GCCGTTCGGGAAGTTGGAT 60.377 57.895 13.16 0.00 38.47 3.41
305 352 4.692475 CCGGCCGTTCGGGAAGTT 62.692 66.667 26.12 0.00 45.78 2.66
352 462 0.857287 CGACGAGGATGTCATGCATG 59.143 55.000 21.07 21.07 38.84 4.06
353 463 0.877649 GCGACGAGGATGTCATGCAT 60.878 55.000 7.12 0.00 38.84 3.96
354 464 1.519234 GCGACGAGGATGTCATGCA 60.519 57.895 7.12 0.00 38.84 3.96
355 465 1.485838 CTGCGACGAGGATGTCATGC 61.486 60.000 0.00 0.00 38.84 4.06
356 466 0.873312 CCTGCGACGAGGATGTCATG 60.873 60.000 0.00 0.00 38.84 3.07
357 467 1.323271 ACCTGCGACGAGGATGTCAT 61.323 55.000 16.88 0.00 38.84 3.06
358 468 1.532604 AACCTGCGACGAGGATGTCA 61.533 55.000 16.88 0.00 38.84 3.58
359 469 1.078759 CAACCTGCGACGAGGATGTC 61.079 60.000 16.88 0.00 36.51 3.06
383 493 2.202570 CCGCTTCCTCCGTACGTG 60.203 66.667 15.21 5.96 0.00 4.49
400 510 0.368907 ATTCGAATACGCGTGTGCAC 59.631 50.000 24.59 10.75 42.97 4.57
401 511 1.072391 AATTCGAATACGCGTGTGCA 58.928 45.000 24.59 0.62 42.97 4.57
450 563 2.588877 CGGCCTCCTATGCAACGG 60.589 66.667 0.00 0.00 0.00 4.44
484 597 5.062308 CGCTGAAAACAGGTTAGATACAGAC 59.938 44.000 0.00 0.00 0.00 3.51
508 621 2.159324 GGCAGCAAAGAATGAAGCTACC 60.159 50.000 0.00 0.00 35.19 3.18
577 1016 2.754552 GCACATGCACTATGGGAGAAAA 59.245 45.455 0.00 0.00 43.15 2.29
580 1019 3.786656 GCACATGCACTATGGGAGA 57.213 52.632 0.00 0.00 43.15 3.71
629 1068 3.420576 CGCGCACCATTATTATTTTTCGG 59.579 43.478 8.75 0.00 0.00 4.30
651 1093 3.181487 TGCTTGCTTTGTGAAAGAAGACC 60.181 43.478 0.16 0.00 41.02 3.85
740 1183 2.511600 ATGTTAGGCCACGCTCGC 60.512 61.111 5.01 0.00 0.00 5.03
832 3304 0.615331 TGTGATCCTTGCTCCTGTCC 59.385 55.000 0.00 0.00 0.00 4.02
847 3319 5.957771 AAGGAATGATAGGTAGCTTGTGA 57.042 39.130 0.00 0.00 0.00 3.58
851 3323 5.364157 ACGAGAAAGGAATGATAGGTAGCTT 59.636 40.000 0.00 0.00 0.00 3.74
885 3359 0.765510 GAGACCAACCACCAGGAGTT 59.234 55.000 0.00 0.00 38.69 3.01
886 3360 1.128188 GGAGACCAACCACCAGGAGT 61.128 60.000 0.00 0.00 38.69 3.85
887 3361 0.838122 AGGAGACCAACCACCAGGAG 60.838 60.000 0.00 0.00 38.69 3.69
888 3362 0.836400 GAGGAGACCAACCACCAGGA 60.836 60.000 0.00 0.00 38.69 3.86
891 3365 1.415672 GGTGAGGAGACCAACCACCA 61.416 60.000 16.08 0.00 44.83 4.17
893 3367 1.128188 AGGGTGAGGAGACCAACCAC 61.128 60.000 12.41 7.04 43.72 4.16
894 3368 0.401395 AAGGGTGAGGAGACCAACCA 60.401 55.000 12.41 0.00 43.72 3.67
895 3369 0.325272 GAAGGGTGAGGAGACCAACC 59.675 60.000 0.00 0.00 41.64 3.77
973 3447 1.322538 TGCGCTGTGATCTCTGGCTA 61.323 55.000 9.73 0.00 0.00 3.93
1016 3490 2.092968 CCATTCTTTCCATCCCTCGTCA 60.093 50.000 0.00 0.00 0.00 4.35
1047 3521 3.319198 ACCGTCACCCGCCATTCT 61.319 61.111 0.00 0.00 34.38 2.40
1414 3888 7.316596 CGAAGTACGTACGTTGACTACAACAT 61.317 42.308 27.92 8.69 44.68 2.71
1420 3894 5.315982 CAATCGAAGTACGTACGTTGACTA 58.684 41.667 27.06 10.22 43.13 2.59
1583 4062 3.989698 CTGCGGATGAACGGCTCGT 62.990 63.158 0.00 0.00 43.97 4.18
2609 5109 1.598183 CGTCCGAGTCTGGATTGATCG 60.598 57.143 6.93 2.94 40.91 3.69
2640 5140 6.401394 TGATCCGATTAATAATCCTGCTCAG 58.599 40.000 7.36 0.00 34.35 3.35
2644 5144 5.734720 TCCTGATCCGATTAATAATCCTGC 58.265 41.667 7.36 0.00 34.35 4.85
2650 5150 5.013079 ACCTGCATCCTGATCCGATTAATAA 59.987 40.000 0.00 0.00 0.00 1.40
2651 5151 4.532126 ACCTGCATCCTGATCCGATTAATA 59.468 41.667 0.00 0.00 0.00 0.98
2652 5152 3.328931 ACCTGCATCCTGATCCGATTAAT 59.671 43.478 0.00 0.00 0.00 1.40
2664 5164 0.911769 TCAATTCCGACCTGCATCCT 59.088 50.000 0.00 0.00 0.00 3.24
2739 5239 3.977134 AGAATGATGTGTCAGCTCACT 57.023 42.857 7.05 0.00 37.87 3.41
2744 5244 6.915544 TCAGATAAAGAATGATGTGTCAGC 57.084 37.500 0.00 0.00 37.87 4.26
2811 5311 2.574018 CCACTCTGTCACCGCTGGA 61.574 63.158 1.50 0.00 0.00 3.86
2812 5312 2.047844 CCACTCTGTCACCGCTGG 60.048 66.667 0.00 0.00 0.00 4.85
2829 5329 0.861837 CGCCACTGATCTAATTCGGC 59.138 55.000 0.00 0.00 34.68 5.54
2859 5359 1.785041 CTGGGCCAAGTGTTCACGTG 61.785 60.000 9.94 9.94 0.00 4.49
2932 5432 9.654663 GTAGATGTCCTAAACACTTACTGAATT 57.345 33.333 0.00 0.00 41.75 2.17
2980 5480 9.586150 CATAACGATGTGTAGATTTTCATAAGC 57.414 33.333 0.00 0.00 0.00 3.09
2987 5487 8.561738 AAAGTCCATAACGATGTGTAGATTTT 57.438 30.769 0.00 0.00 0.00 1.82
2990 5490 8.041323 AGAAAAAGTCCATAACGATGTGTAGAT 58.959 33.333 0.00 0.00 0.00 1.98
3082 5584 3.619483 TGGCGATTTTTCAGGTGTATACG 59.381 43.478 0.00 0.00 0.00 3.06
3087 5589 1.981256 ACTGGCGATTTTTCAGGTGT 58.019 45.000 0.00 0.00 33.19 4.16
3091 5593 7.636259 TTTGAATTTACTGGCGATTTTTCAG 57.364 32.000 0.00 0.00 34.91 3.02
3098 5600 9.463443 GCTATTTTATTTGAATTTACTGGCGAT 57.537 29.630 0.00 0.00 0.00 4.58
3099 5601 8.462811 TGCTATTTTATTTGAATTTACTGGCGA 58.537 29.630 0.00 0.00 0.00 5.54
3156 5691 5.865552 GCATGCACATAGAAAACTTGTTCAT 59.134 36.000 14.21 0.00 29.27 2.57
3186 5721 5.363292 CCCCCATTGTCATATTTGTCATGAA 59.637 40.000 0.00 0.00 34.32 2.57
3192 5727 3.052642 AGCTCCCCCATTGTCATATTTGT 60.053 43.478 0.00 0.00 0.00 2.83
3194 5729 3.748668 CGAGCTCCCCCATTGTCATATTT 60.749 47.826 8.47 0.00 0.00 1.40
3288 5823 1.508632 CCGATTTTGACACCGACAGT 58.491 50.000 0.00 0.00 0.00 3.55
3289 5824 0.165944 GCCGATTTTGACACCGACAG 59.834 55.000 0.00 0.00 0.00 3.51
3290 5825 1.561717 CGCCGATTTTGACACCGACA 61.562 55.000 0.00 0.00 0.00 4.35
3291 5826 1.131826 CGCCGATTTTGACACCGAC 59.868 57.895 0.00 0.00 0.00 4.79
3292 5827 2.030401 CCGCCGATTTTGACACCGA 61.030 57.895 0.00 0.00 0.00 4.69
3293 5828 1.366111 ATCCGCCGATTTTGACACCG 61.366 55.000 0.00 0.00 0.00 4.94
3294 5829 0.377203 GATCCGCCGATTTTGACACC 59.623 55.000 0.00 0.00 0.00 4.16
3295 5830 1.327764 GAGATCCGCCGATTTTGACAC 59.672 52.381 0.00 0.00 0.00 3.67
3296 5831 1.651987 GAGATCCGCCGATTTTGACA 58.348 50.000 0.00 0.00 0.00 3.58
3297 5832 0.577269 CGAGATCCGCCGATTTTGAC 59.423 55.000 0.00 0.00 0.00 3.18
3298 5833 0.529773 CCGAGATCCGCCGATTTTGA 60.530 55.000 0.00 0.00 36.84 2.69
3299 5834 1.498865 CCCGAGATCCGCCGATTTTG 61.499 60.000 0.00 0.00 36.84 2.44
3300 5835 1.227556 CCCGAGATCCGCCGATTTT 60.228 57.895 0.00 0.00 36.84 1.82
3301 5836 1.111116 TACCCGAGATCCGCCGATTT 61.111 55.000 0.00 0.00 36.84 2.17
3302 5837 1.524863 CTACCCGAGATCCGCCGATT 61.525 60.000 0.00 0.00 36.84 3.34
3303 5838 1.972223 CTACCCGAGATCCGCCGAT 60.972 63.158 0.00 0.00 36.84 4.18
3304 5839 2.593725 CTACCCGAGATCCGCCGA 60.594 66.667 0.00 0.00 36.84 5.54
3305 5840 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
3306 5841 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
3307 5842 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
3308 5843 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
3309 5844 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
3310 5845 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
3311 5846 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
3312 5847 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
3316 5851 1.543134 AGTTTGGGACCCCCTACCC 60.543 63.158 8.45 0.00 45.70 3.69
3317 5852 1.138228 ACAGTTTGGGACCCCCTACC 61.138 60.000 8.45 0.00 45.70 3.18
3318 5853 0.037734 CACAGTTTGGGACCCCCTAC 59.962 60.000 8.45 3.28 45.70 3.18
3319 5854 0.402272 ACACAGTTTGGGACCCCCTA 60.402 55.000 8.45 0.00 45.70 3.53
3320 5855 1.699930 ACACAGTTTGGGACCCCCT 60.700 57.895 8.45 0.00 45.70 4.79
3321 5856 1.530655 CACACAGTTTGGGACCCCC 60.531 63.158 8.45 0.00 45.71 5.40
3322 5857 0.822121 GACACACAGTTTGGGACCCC 60.822 60.000 8.45 2.69 30.45 4.95
3323 5858 0.182775 AGACACACAGTTTGGGACCC 59.817 55.000 2.45 2.45 30.45 4.46
3324 5859 2.550208 CCTAGACACACAGTTTGGGACC 60.550 54.545 0.00 0.00 35.26 4.46
3325 5860 2.367567 TCCTAGACACACAGTTTGGGAC 59.632 50.000 0.00 0.00 37.12 4.46
3326 5861 2.684943 TCCTAGACACACAGTTTGGGA 58.315 47.619 0.00 0.00 39.28 4.37
3327 5862 3.600388 GATCCTAGACACACAGTTTGGG 58.400 50.000 0.00 0.00 34.67 4.12
3328 5863 3.056821 TCGATCCTAGACACACAGTTTGG 60.057 47.826 0.00 0.00 0.00 3.28
3329 5864 4.174411 TCGATCCTAGACACACAGTTTG 57.826 45.455 0.00 0.00 0.00 2.93
3330 5865 4.382040 CCATCGATCCTAGACACACAGTTT 60.382 45.833 0.00 0.00 0.00 2.66
3331 5866 3.131223 CCATCGATCCTAGACACACAGTT 59.869 47.826 0.00 0.00 0.00 3.16
3332 5867 2.690497 CCATCGATCCTAGACACACAGT 59.310 50.000 0.00 0.00 0.00 3.55
3333 5868 2.690497 ACCATCGATCCTAGACACACAG 59.310 50.000 0.00 0.00 0.00 3.66
3334 5869 2.735151 ACCATCGATCCTAGACACACA 58.265 47.619 0.00 0.00 0.00 3.72
3335 5870 4.097437 TGTTACCATCGATCCTAGACACAC 59.903 45.833 0.00 0.00 0.00 3.82
3336 5871 4.274978 TGTTACCATCGATCCTAGACACA 58.725 43.478 0.00 0.00 0.00 3.72
3337 5872 4.261656 CCTGTTACCATCGATCCTAGACAC 60.262 50.000 0.00 0.00 0.00 3.67
3338 5873 3.889538 CCTGTTACCATCGATCCTAGACA 59.110 47.826 0.00 0.00 0.00 3.41
3339 5874 4.142790 TCCTGTTACCATCGATCCTAGAC 58.857 47.826 0.00 0.00 0.00 2.59
3340 5875 4.104261 TCTCCTGTTACCATCGATCCTAGA 59.896 45.833 0.00 0.00 0.00 2.43
3341 5876 4.216687 GTCTCCTGTTACCATCGATCCTAG 59.783 50.000 0.00 0.00 0.00 3.02
3342 5877 4.142790 GTCTCCTGTTACCATCGATCCTA 58.857 47.826 0.00 0.00 0.00 2.94
3343 5878 2.959707 GTCTCCTGTTACCATCGATCCT 59.040 50.000 0.00 0.00 0.00 3.24
3344 5879 2.287668 CGTCTCCTGTTACCATCGATCC 60.288 54.545 0.00 0.00 0.00 3.36
3345 5880 2.287668 CCGTCTCCTGTTACCATCGATC 60.288 54.545 0.00 0.00 0.00 3.69
3346 5881 1.681793 CCGTCTCCTGTTACCATCGAT 59.318 52.381 0.00 0.00 0.00 3.59
3347 5882 1.100510 CCGTCTCCTGTTACCATCGA 58.899 55.000 0.00 0.00 0.00 3.59
3348 5883 0.102481 CCCGTCTCCTGTTACCATCG 59.898 60.000 0.00 0.00 0.00 3.84
3349 5884 0.464452 CCCCGTCTCCTGTTACCATC 59.536 60.000 0.00 0.00 0.00 3.51
3350 5885 0.981277 CCCCCGTCTCCTGTTACCAT 60.981 60.000 0.00 0.00 0.00 3.55
3351 5886 1.611261 CCCCCGTCTCCTGTTACCA 60.611 63.158 0.00 0.00 0.00 3.25
3352 5887 1.305549 TCCCCCGTCTCCTGTTACC 60.306 63.158 0.00 0.00 0.00 2.85
3353 5888 0.901580 TGTCCCCCGTCTCCTGTTAC 60.902 60.000 0.00 0.00 0.00 2.50
3354 5889 0.901580 GTGTCCCCCGTCTCCTGTTA 60.902 60.000 0.00 0.00 0.00 2.41
3355 5890 2.203182 TGTCCCCCGTCTCCTGTT 59.797 61.111 0.00 0.00 0.00 3.16
3356 5891 2.603776 GTGTCCCCCGTCTCCTGT 60.604 66.667 0.00 0.00 0.00 4.00
3357 5892 3.760035 CGTGTCCCCCGTCTCCTG 61.760 72.222 0.00 0.00 0.00 3.86
3358 5893 3.298300 ATCGTGTCCCCCGTCTCCT 62.298 63.158 0.00 0.00 0.00 3.69
3359 5894 2.758737 ATCGTGTCCCCCGTCTCC 60.759 66.667 0.00 0.00 0.00 3.71
3360 5895 1.885163 AACATCGTGTCCCCCGTCTC 61.885 60.000 0.00 0.00 0.00 3.36
3361 5896 1.477685 AAACATCGTGTCCCCCGTCT 61.478 55.000 0.00 0.00 0.00 4.18
3362 5897 0.247185 TAAACATCGTGTCCCCCGTC 59.753 55.000 0.00 0.00 0.00 4.79
3363 5898 0.037046 GTAAACATCGTGTCCCCCGT 60.037 55.000 0.00 0.00 0.00 5.28
3364 5899 0.741927 GGTAAACATCGTGTCCCCCG 60.742 60.000 0.00 0.00 0.00 5.73
3365 5900 0.393402 GGGTAAACATCGTGTCCCCC 60.393 60.000 0.00 0.00 30.72 5.40
3366 5901 0.325602 TGGGTAAACATCGTGTCCCC 59.674 55.000 9.39 10.06 34.88 4.81
3367 5902 1.677820 CCTGGGTAAACATCGTGTCCC 60.678 57.143 0.00 0.00 35.85 4.46
3368 5903 1.002773 ACCTGGGTAAACATCGTGTCC 59.997 52.381 0.00 0.00 0.00 4.02
3369 5904 2.467566 ACCTGGGTAAACATCGTGTC 57.532 50.000 0.00 0.00 0.00 3.67
3370 5905 2.774687 GAACCTGGGTAAACATCGTGT 58.225 47.619 0.00 0.00 0.00 4.49
3371 5906 1.730064 CGAACCTGGGTAAACATCGTG 59.270 52.381 0.00 0.00 0.00 4.35
3372 5907 1.338389 CCGAACCTGGGTAAACATCGT 60.338 52.381 0.00 0.00 0.00 3.73
3373 5908 1.365699 CCGAACCTGGGTAAACATCG 58.634 55.000 0.00 4.42 0.00 3.84
3374 5909 1.746470 CCCGAACCTGGGTAAACATC 58.254 55.000 0.00 0.00 44.76 3.06
3375 5910 3.970205 CCCGAACCTGGGTAAACAT 57.030 52.632 0.00 0.00 44.76 2.71
3383 5918 2.873557 TAGAGAGGGCCCGAACCTGG 62.874 65.000 18.44 0.00 38.79 4.45
3384 5919 0.760945 ATAGAGAGGGCCCGAACCTG 60.761 60.000 18.44 0.00 38.79 4.00
3385 5920 0.760945 CATAGAGAGGGCCCGAACCT 60.761 60.000 18.44 14.71 42.18 3.50
3386 5921 1.749033 CATAGAGAGGGCCCGAACC 59.251 63.158 18.44 7.31 0.00 3.62
3387 5922 0.759436 TCCATAGAGAGGGCCCGAAC 60.759 60.000 18.44 12.45 0.00 3.95
3388 5923 0.470080 CTCCATAGAGAGGGCCCGAA 60.470 60.000 18.44 0.98 43.39 4.30
3389 5924 1.153989 CTCCATAGAGAGGGCCCGA 59.846 63.158 18.44 3.54 43.39 5.14
3390 5925 3.784573 CTCCATAGAGAGGGCCCG 58.215 66.667 18.44 0.00 43.39 6.13
3396 5931 5.881443 CGTAGGGTATTACCTCCATAGAGAG 59.119 48.000 12.54 0.00 43.39 3.20
3397 5932 5.311649 ACGTAGGGTATTACCTCCATAGAGA 59.688 44.000 12.54 0.00 43.39 3.10
3398 5933 5.568392 ACGTAGGGTATTACCTCCATAGAG 58.432 45.833 12.54 0.49 42.09 2.43
3399 5934 5.515534 GGACGTAGGGTATTACCTCCATAGA 60.516 48.000 12.54 0.00 42.09 1.98
3400 5935 4.704057 GGACGTAGGGTATTACCTCCATAG 59.296 50.000 12.54 3.22 42.09 2.23
3401 5936 4.354987 AGGACGTAGGGTATTACCTCCATA 59.645 45.833 16.39 3.42 42.09 2.74
3402 5937 3.141649 AGGACGTAGGGTATTACCTCCAT 59.858 47.826 16.39 4.17 42.09 3.41
3403 5938 2.515429 AGGACGTAGGGTATTACCTCCA 59.485 50.000 16.39 0.80 42.09 3.86
3404 5939 2.889678 CAGGACGTAGGGTATTACCTCC 59.110 54.545 12.54 10.66 42.09 4.30
3405 5940 2.295629 GCAGGACGTAGGGTATTACCTC 59.704 54.545 12.54 2.11 42.09 3.85
3406 5941 2.091444 AGCAGGACGTAGGGTATTACCT 60.091 50.000 12.54 2.07 44.75 3.08
3407 5942 2.314246 AGCAGGACGTAGGGTATTACC 58.686 52.381 4.11 4.11 37.60 2.85
3408 5943 3.382546 TCAAGCAGGACGTAGGGTATTAC 59.617 47.826 0.00 0.00 0.00 1.89
3409 5944 3.634504 TCAAGCAGGACGTAGGGTATTA 58.365 45.455 0.00 0.00 0.00 0.98
3410 5945 2.463752 TCAAGCAGGACGTAGGGTATT 58.536 47.619 0.00 0.00 0.00 1.89
3411 5946 2.154567 TCAAGCAGGACGTAGGGTAT 57.845 50.000 0.00 0.00 0.00 2.73
3412 5947 2.154567 ATCAAGCAGGACGTAGGGTA 57.845 50.000 0.00 0.00 0.00 3.69
3413 5948 1.066143 CAATCAAGCAGGACGTAGGGT 60.066 52.381 0.00 0.00 0.00 4.34
3414 5949 1.207089 TCAATCAAGCAGGACGTAGGG 59.793 52.381 0.00 0.00 0.00 3.53
3415 5950 2.672961 TCAATCAAGCAGGACGTAGG 57.327 50.000 0.00 0.00 0.00 3.18
3416 5951 4.052159 AGATCAATCAAGCAGGACGTAG 57.948 45.455 0.00 0.00 0.00 3.51
3417 5952 4.081697 TCAAGATCAATCAAGCAGGACGTA 60.082 41.667 0.00 0.00 0.00 3.57
3418 5953 3.005554 CAAGATCAATCAAGCAGGACGT 58.994 45.455 0.00 0.00 0.00 4.34
3419 5954 3.264947 TCAAGATCAATCAAGCAGGACG 58.735 45.455 0.00 0.00 0.00 4.79
3420 5955 4.880120 TCATCAAGATCAATCAAGCAGGAC 59.120 41.667 0.00 0.00 0.00 3.85
3421 5956 5.106876 TCATCAAGATCAATCAAGCAGGA 57.893 39.130 0.00 0.00 0.00 3.86
3422 5957 5.830000 TTCATCAAGATCAATCAAGCAGG 57.170 39.130 0.00 0.00 0.00 4.85
3423 5958 8.784043 TCATATTCATCAAGATCAATCAAGCAG 58.216 33.333 0.00 0.00 0.00 4.24
3424 5959 8.685838 TCATATTCATCAAGATCAATCAAGCA 57.314 30.769 0.00 0.00 0.00 3.91
3425 5960 8.784994 ACTCATATTCATCAAGATCAATCAAGC 58.215 33.333 0.00 0.00 0.00 4.01
3427 5962 9.623000 ACACTCATATTCATCAAGATCAATCAA 57.377 29.630 0.00 0.00 0.00 2.57
3428 5963 9.623000 AACACTCATATTCATCAAGATCAATCA 57.377 29.630 0.00 0.00 0.00 2.57
3431 5966 9.889128 TGTAACACTCATATTCATCAAGATCAA 57.111 29.630 0.00 0.00 0.00 2.57
3432 5967 9.889128 TTGTAACACTCATATTCATCAAGATCA 57.111 29.630 0.00 0.00 0.00 2.92
3435 5970 9.942850 TTCTTGTAACACTCATATTCATCAAGA 57.057 29.630 0.00 0.00 36.74 3.02
3445 5980 9.817809 GGTAGATCAATTCTTGTAACACTCATA 57.182 33.333 0.00 0.00 35.79 2.15
3446 5981 8.321353 TGGTAGATCAATTCTTGTAACACTCAT 58.679 33.333 0.00 0.00 35.79 2.90
3447 5982 7.602644 GTGGTAGATCAATTCTTGTAACACTCA 59.397 37.037 0.00 0.00 35.79 3.41
3448 5983 7.201444 CGTGGTAGATCAATTCTTGTAACACTC 60.201 40.741 0.00 0.00 35.79 3.51
3449 5984 6.590292 CGTGGTAGATCAATTCTTGTAACACT 59.410 38.462 0.00 0.00 35.79 3.55
3450 5985 6.588756 TCGTGGTAGATCAATTCTTGTAACAC 59.411 38.462 0.00 0.00 35.79 3.32
3451 5986 6.693466 TCGTGGTAGATCAATTCTTGTAACA 58.307 36.000 0.00 0.00 35.79 2.41
3452 5987 7.009357 GTCTCGTGGTAGATCAATTCTTGTAAC 59.991 40.741 0.00 0.00 35.79 2.50
3453 5988 7.033791 GTCTCGTGGTAGATCAATTCTTGTAA 58.966 38.462 0.00 0.00 35.79 2.41
3454 5989 6.405508 GGTCTCGTGGTAGATCAATTCTTGTA 60.406 42.308 0.00 0.00 35.79 2.41
3455 5990 5.411781 GTCTCGTGGTAGATCAATTCTTGT 58.588 41.667 0.00 0.00 35.79 3.16
3456 5991 4.806247 GGTCTCGTGGTAGATCAATTCTTG 59.194 45.833 0.00 0.00 35.79 3.02
3457 5992 4.440250 CGGTCTCGTGGTAGATCAATTCTT 60.440 45.833 0.00 0.00 35.79 2.52
3458 5993 3.066900 CGGTCTCGTGGTAGATCAATTCT 59.933 47.826 0.00 0.00 38.57 2.40
3459 5994 3.372954 CGGTCTCGTGGTAGATCAATTC 58.627 50.000 0.00 0.00 0.00 2.17
3460 5995 3.438297 CGGTCTCGTGGTAGATCAATT 57.562 47.619 0.00 0.00 0.00 2.32
3471 6006 4.524855 GGTTTAGCCATTACGGTCTCGTG 61.525 52.174 1.44 0.00 42.89 4.35
3472 6007 2.417787 GGTTTAGCCATTACGGTCTCGT 60.418 50.000 0.00 0.00 44.23 4.18
3473 6008 2.199236 GGTTTAGCCATTACGGTCTCG 58.801 52.381 0.00 0.00 38.73 4.04
3474 6009 2.169978 AGGGTTTAGCCATTACGGTCTC 59.830 50.000 0.26 0.00 39.65 3.36
3475 6010 2.193993 AGGGTTTAGCCATTACGGTCT 58.806 47.619 0.26 0.00 39.65 3.85
3476 6011 2.704464 AGGGTTTAGCCATTACGGTC 57.296 50.000 0.26 0.00 39.65 4.79
3477 6012 3.377573 TCTAGGGTTTAGCCATTACGGT 58.622 45.455 0.26 0.00 39.65 4.83
3478 6013 4.141779 ACTTCTAGGGTTTAGCCATTACGG 60.142 45.833 0.26 0.00 39.65 4.02
3479 6014 5.019785 ACTTCTAGGGTTTAGCCATTACG 57.980 43.478 0.26 0.00 39.65 3.18
3480 6015 6.236558 AGACTTCTAGGGTTTAGCCATTAC 57.763 41.667 0.26 0.00 39.65 1.89
3481 6016 7.147602 GGTTAGACTTCTAGGGTTTAGCCATTA 60.148 40.741 11.77 0.00 39.65 1.90
3482 6017 6.352823 GGTTAGACTTCTAGGGTTTAGCCATT 60.353 42.308 11.77 0.00 39.65 3.16
3483 6018 5.130643 GGTTAGACTTCTAGGGTTTAGCCAT 59.869 44.000 11.77 0.00 39.65 4.40
3484 6019 4.468868 GGTTAGACTTCTAGGGTTTAGCCA 59.531 45.833 11.77 0.00 39.65 4.75
3485 6020 4.715792 AGGTTAGACTTCTAGGGTTTAGCC 59.284 45.833 9.97 9.97 0.00 3.93
3486 6021 5.187381 ACAGGTTAGACTTCTAGGGTTTAGC 59.813 44.000 0.00 0.00 0.00 3.09
3487 6022 6.854091 ACAGGTTAGACTTCTAGGGTTTAG 57.146 41.667 0.00 0.00 0.00 1.85
3488 6023 8.117956 TCATACAGGTTAGACTTCTAGGGTTTA 58.882 37.037 0.00 0.00 0.00 2.01
3489 6024 6.958192 TCATACAGGTTAGACTTCTAGGGTTT 59.042 38.462 0.00 0.00 0.00 3.27
3490 6025 6.380560 GTCATACAGGTTAGACTTCTAGGGTT 59.619 42.308 0.00 0.00 0.00 4.11
3491 6026 5.892686 GTCATACAGGTTAGACTTCTAGGGT 59.107 44.000 0.00 0.00 0.00 4.34
3492 6027 6.130569 AGTCATACAGGTTAGACTTCTAGGG 58.869 44.000 0.00 0.00 38.08 3.53
3493 6028 8.788806 CATAGTCATACAGGTTAGACTTCTAGG 58.211 40.741 10.37 0.00 41.27 3.02
3494 6029 8.788806 CCATAGTCATACAGGTTAGACTTCTAG 58.211 40.741 10.37 0.00 41.27 2.43
3495 6030 8.280084 ACCATAGTCATACAGGTTAGACTTCTA 58.720 37.037 10.37 0.00 41.27 2.10
3496 6031 7.126733 ACCATAGTCATACAGGTTAGACTTCT 58.873 38.462 10.37 0.00 41.27 2.85
3497 6032 7.349412 ACCATAGTCATACAGGTTAGACTTC 57.651 40.000 10.37 0.00 41.27 3.01
3498 6033 8.834004 TTACCATAGTCATACAGGTTAGACTT 57.166 34.615 10.37 0.00 41.27 3.01
3517 6052 9.886132 GTCCGGAAATGATATACTTATTACCAT 57.114 33.333 5.23 0.00 0.00 3.55
3518 6053 9.096823 AGTCCGGAAATGATATACTTATTACCA 57.903 33.333 5.23 0.00 0.00 3.25
3519 6054 9.367444 CAGTCCGGAAATGATATACTTATTACC 57.633 37.037 5.23 0.00 0.00 2.85
3522 6057 8.095169 GGTCAGTCCGGAAATGATATACTTATT 58.905 37.037 20.28 0.00 0.00 1.40
3523 6058 7.310485 GGGTCAGTCCGGAAATGATATACTTAT 60.310 40.741 20.28 0.00 37.00 1.73
3524 6059 6.014840 GGGTCAGTCCGGAAATGATATACTTA 60.015 42.308 20.28 0.00 37.00 2.24
3525 6060 5.221661 GGGTCAGTCCGGAAATGATATACTT 60.222 44.000 20.28 0.00 37.00 2.24
3526 6061 4.283722 GGGTCAGTCCGGAAATGATATACT 59.716 45.833 20.28 2.59 37.00 2.12
3527 6062 4.562963 GGGGTCAGTCCGGAAATGATATAC 60.563 50.000 20.28 10.26 37.00 1.47
3528 6063 3.581332 GGGGTCAGTCCGGAAATGATATA 59.419 47.826 20.28 0.00 37.00 0.86
3529 6064 2.372172 GGGGTCAGTCCGGAAATGATAT 59.628 50.000 20.28 0.00 37.00 1.63
3530 6065 1.766496 GGGGTCAGTCCGGAAATGATA 59.234 52.381 20.28 0.43 37.00 2.15
3531 6066 0.546598 GGGGTCAGTCCGGAAATGAT 59.453 55.000 20.28 0.00 37.00 2.45
3532 6067 0.546747 AGGGGTCAGTCCGGAAATGA 60.547 55.000 5.23 11.55 37.00 2.57
3533 6068 0.107654 GAGGGGTCAGTCCGGAAATG 60.108 60.000 5.23 8.90 37.00 2.32
3534 6069 1.272554 GGAGGGGTCAGTCCGGAAAT 61.273 60.000 5.23 0.00 37.00 2.17
3535 6070 1.916777 GGAGGGGTCAGTCCGGAAA 60.917 63.158 5.23 0.00 37.00 3.13
3536 6071 2.284405 GGAGGGGTCAGTCCGGAA 60.284 66.667 5.23 0.00 37.00 4.30
3554 6089 4.154942 TCCCCTCGGTGTCTATATAAACC 58.845 47.826 0.00 0.68 0.00 3.27
3555 6090 5.715753 AGATCCCCTCGGTGTCTATATAAAC 59.284 44.000 0.00 0.00 0.00 2.01
3556 6091 5.900437 AGATCCCCTCGGTGTCTATATAAA 58.100 41.667 0.00 0.00 0.00 1.40
3557 6092 5.531753 AGATCCCCTCGGTGTCTATATAA 57.468 43.478 0.00 0.00 0.00 0.98
3558 6093 5.132312 CCTAGATCCCCTCGGTGTCTATATA 59.868 48.000 0.00 0.00 31.56 0.86
3559 6094 4.079672 CCTAGATCCCCTCGGTGTCTATAT 60.080 50.000 0.00 0.00 31.56 0.86
3560 6095 3.266254 CCTAGATCCCCTCGGTGTCTATA 59.734 52.174 0.00 0.00 31.56 1.31
3561 6096 2.041891 CCTAGATCCCCTCGGTGTCTAT 59.958 54.545 0.00 0.00 31.56 1.98
3562 6097 1.424302 CCTAGATCCCCTCGGTGTCTA 59.576 57.143 0.00 0.00 0.00 2.59
3563 6098 0.186386 CCTAGATCCCCTCGGTGTCT 59.814 60.000 0.00 0.00 0.00 3.41
3564 6099 0.828343 CCCTAGATCCCCTCGGTGTC 60.828 65.000 0.00 0.00 0.00 3.67
3565 6100 1.233369 CCCTAGATCCCCTCGGTGT 59.767 63.158 0.00 0.00 0.00 4.16
3566 6101 0.398664 AACCCTAGATCCCCTCGGTG 60.399 60.000 0.00 0.00 30.48 4.94
3567 6102 0.342313 AAACCCTAGATCCCCTCGGT 59.658 55.000 0.00 0.00 31.07 4.69
3568 6103 1.969208 GTAAACCCTAGATCCCCTCGG 59.031 57.143 0.00 0.00 0.00 4.63
3569 6104 2.674420 TGTAAACCCTAGATCCCCTCG 58.326 52.381 0.00 0.00 0.00 4.63
3570 6105 5.652324 TCTATGTAAACCCTAGATCCCCTC 58.348 45.833 0.00 0.00 0.00 4.30
3571 6106 5.138123 ACTCTATGTAAACCCTAGATCCCCT 59.862 44.000 0.00 0.00 0.00 4.79
3572 6107 5.404395 ACTCTATGTAAACCCTAGATCCCC 58.596 45.833 0.00 0.00 0.00 4.81
3573 6108 5.183522 CGACTCTATGTAAACCCTAGATCCC 59.816 48.000 0.00 0.00 0.00 3.85
3574 6109 5.183522 CCGACTCTATGTAAACCCTAGATCC 59.816 48.000 0.00 0.00 0.00 3.36
3575 6110 5.769162 ACCGACTCTATGTAAACCCTAGATC 59.231 44.000 0.00 0.00 0.00 2.75
3576 6111 5.703310 ACCGACTCTATGTAAACCCTAGAT 58.297 41.667 0.00 0.00 0.00 1.98
3577 6112 5.121380 ACCGACTCTATGTAAACCCTAGA 57.879 43.478 0.00 0.00 0.00 2.43
3578 6113 5.848833 AACCGACTCTATGTAAACCCTAG 57.151 43.478 0.00 0.00 0.00 3.02
3579 6114 6.186957 TGTAACCGACTCTATGTAAACCCTA 58.813 40.000 0.00 0.00 0.00 3.53
3580 6115 5.018809 TGTAACCGACTCTATGTAAACCCT 58.981 41.667 0.00 0.00 0.00 4.34
3581 6116 5.329035 TGTAACCGACTCTATGTAAACCC 57.671 43.478 0.00 0.00 0.00 4.11
3582 6117 8.408601 TCTTATGTAACCGACTCTATGTAAACC 58.591 37.037 0.00 0.00 0.00 3.27
3583 6118 9.793252 TTCTTATGTAACCGACTCTATGTAAAC 57.207 33.333 0.00 0.00 0.00 2.01
3585 6120 8.627403 CCTTCTTATGTAACCGACTCTATGTAA 58.373 37.037 0.00 0.00 0.00 2.41
3586 6121 7.994911 TCCTTCTTATGTAACCGACTCTATGTA 59.005 37.037 0.00 0.00 0.00 2.29
3587 6122 6.832384 TCCTTCTTATGTAACCGACTCTATGT 59.168 38.462 0.00 0.00 0.00 2.29
3588 6123 7.273320 TCCTTCTTATGTAACCGACTCTATG 57.727 40.000 0.00 0.00 0.00 2.23
3589 6124 7.893124 TTCCTTCTTATGTAACCGACTCTAT 57.107 36.000 0.00 0.00 0.00 1.98
3590 6125 7.778853 AGATTCCTTCTTATGTAACCGACTCTA 59.221 37.037 0.00 0.00 0.00 2.43
3591 6126 6.608002 AGATTCCTTCTTATGTAACCGACTCT 59.392 38.462 0.00 0.00 0.00 3.24
3592 6127 6.807789 AGATTCCTTCTTATGTAACCGACTC 58.192 40.000 0.00 0.00 0.00 3.36
3593 6128 6.793505 AGATTCCTTCTTATGTAACCGACT 57.206 37.500 0.00 0.00 0.00 4.18
3594 6129 7.039882 TGAAGATTCCTTCTTATGTAACCGAC 58.960 38.462 6.71 0.00 44.88 4.79
3595 6130 7.177832 TGAAGATTCCTTCTTATGTAACCGA 57.822 36.000 6.71 0.00 44.88 4.69
3596 6131 9.197694 CTATGAAGATTCCTTCTTATGTAACCG 57.802 37.037 6.71 0.00 44.88 4.44
3599 6134 9.967346 CGACTATGAAGATTCCTTCTTATGTAA 57.033 33.333 6.71 0.00 44.88 2.41
3600 6135 8.577296 CCGACTATGAAGATTCCTTCTTATGTA 58.423 37.037 6.71 0.00 44.88 2.29
3601 6136 7.070074 ACCGACTATGAAGATTCCTTCTTATGT 59.930 37.037 6.71 5.40 44.88 2.29
3602 6137 7.437748 ACCGACTATGAAGATTCCTTCTTATG 58.562 38.462 6.71 3.07 44.88 1.90
3603 6138 7.256012 GGACCGACTATGAAGATTCCTTCTTAT 60.256 40.741 6.71 0.00 44.88 1.73
3604 6139 6.040616 GGACCGACTATGAAGATTCCTTCTTA 59.959 42.308 6.71 4.33 44.88 2.10
3606 6141 4.342665 GGACCGACTATGAAGATTCCTTCT 59.657 45.833 6.71 0.00 46.84 2.85
3607 6142 4.623002 GGACCGACTATGAAGATTCCTTC 58.377 47.826 0.00 0.00 46.89 3.46
3608 6143 3.068307 CGGACCGACTATGAAGATTCCTT 59.932 47.826 8.64 0.00 34.81 3.36
3609 6144 2.623889 CGGACCGACTATGAAGATTCCT 59.376 50.000 8.64 0.00 0.00 3.36
3610 6145 2.862921 GCGGACCGACTATGAAGATTCC 60.863 54.545 20.50 0.00 0.00 3.01
3611 6146 2.395654 GCGGACCGACTATGAAGATTC 58.604 52.381 20.50 0.00 0.00 2.52
3612 6147 1.068741 GGCGGACCGACTATGAAGATT 59.931 52.381 20.50 0.00 0.00 2.40
3613 6148 0.674534 GGCGGACCGACTATGAAGAT 59.325 55.000 20.50 0.00 0.00 2.40
3614 6149 0.681887 TGGCGGACCGACTATGAAGA 60.682 55.000 22.84 0.00 39.70 2.87
3615 6150 0.174845 TTGGCGGACCGACTATGAAG 59.825 55.000 22.84 0.00 39.70 3.02
3616 6151 0.609151 TTTGGCGGACCGACTATGAA 59.391 50.000 22.84 3.27 39.70 2.57
3617 6152 0.108520 GTTTGGCGGACCGACTATGA 60.109 55.000 22.84 0.00 39.70 2.15
3618 6153 0.108329 AGTTTGGCGGACCGACTATG 60.108 55.000 22.84 0.00 39.70 2.23
3619 6154 0.611714 AAGTTTGGCGGACCGACTAT 59.388 50.000 22.84 0.54 39.70 2.12
3620 6155 0.320073 CAAGTTTGGCGGACCGACTA 60.320 55.000 22.84 11.34 39.70 2.59
3621 6156 1.597027 CAAGTTTGGCGGACCGACT 60.597 57.895 22.84 10.86 39.70 4.18
3622 6157 2.943653 CAAGTTTGGCGGACCGAC 59.056 61.111 20.50 17.62 39.70 4.79
3623 6158 2.951475 AAGCAAGTTTGGCGGACCGA 62.951 55.000 20.50 0.00 39.70 4.69
3624 6159 2.070654 AAAGCAAGTTTGGCGGACCG 62.071 55.000 10.29 10.29 39.70 4.79
3625 6160 1.739667 AAAGCAAGTTTGGCGGACC 59.260 52.632 0.00 0.00 36.08 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.