Multiple sequence alignment - TraesCS2A01G401200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G401200 chr2A 100.000 7945 0 0 1 7945 654906253 654914197 0.000000e+00 14672.0
1 TraesCS2A01G401200 chr2A 93.269 104 4 3 5688 5789 654911637 654911739 4.970000e-32 150.0
2 TraesCS2A01G401200 chr2A 93.269 104 4 3 5385 5487 654911940 654912041 4.970000e-32 150.0
3 TraesCS2A01G401200 chr2A 89.623 106 6 4 3975 4076 151266598 151266702 6.470000e-26 130.0
4 TraesCS2A01G401200 chr2A 86.087 115 11 4 3960 4072 270466829 270466940 1.400000e-22 119.0
5 TraesCS2A01G401200 chr2A 94.444 72 2 2 5829 5899 329705815 329705885 8.430000e-20 110.0
6 TraesCS2A01G401200 chr2A 87.342 79 5 1 6420 6493 778801318 778801396 1.420000e-12 86.1
7 TraesCS2A01G401200 chr2B 88.770 2894 167 58 231 3086 600739283 600742056 0.000000e+00 3398.0
8 TraesCS2A01G401200 chr2B 92.535 1795 84 21 4069 5841 600742819 600744585 0.000000e+00 2527.0
9 TraesCS2A01G401200 chr2B 87.249 1294 58 42 5900 7113 600744588 600745854 0.000000e+00 1376.0
10 TraesCS2A01G401200 chr2B 89.529 850 64 16 7109 7945 600745916 600746753 0.000000e+00 1053.0
11 TraesCS2A01G401200 chr2B 84.802 658 53 12 3333 3990 600742211 600742821 1.130000e-172 617.0
12 TraesCS2A01G401200 chr2B 92.537 201 8 2 3 203 600739014 600739207 1.690000e-71 281.0
13 TraesCS2A01G401200 chr2B 90.909 99 7 2 5688 5784 600744142 600744240 1.800000e-26 132.0
14 TraesCS2A01G401200 chr2B 89.320 103 7 3 5385 5487 600744434 600744532 8.370000e-25 126.0
15 TraesCS2A01G401200 chr2B 95.349 43 2 0 6958 7000 23545365 23545407 1.430000e-07 69.4
16 TraesCS2A01G401200 chr2B 91.304 46 2 2 6962 7007 600745772 600745729 2.390000e-05 62.1
17 TraesCS2A01G401200 chr2D 89.868 2270 142 38 906 3159 511687899 511690096 0.000000e+00 2837.0
18 TraesCS2A01G401200 chr2D 92.918 1638 74 22 4205 5816 511691036 511692657 0.000000e+00 2344.0
19 TraesCS2A01G401200 chr2D 87.767 842 54 27 7109 7945 511693977 511694774 0.000000e+00 939.0
20 TraesCS2A01G401200 chr2D 89.678 746 46 13 3255 3990 511690136 511690860 0.000000e+00 922.0
21 TraesCS2A01G401200 chr2D 89.110 753 28 21 5900 6622 511692698 511693426 0.000000e+00 887.0
22 TraesCS2A01G401200 chr2D 85.567 485 28 13 6655 7111 511693426 511693896 3.360000e-128 470.0
23 TraesCS2A01G401200 chr2D 90.310 258 9 9 670 924 511674913 511675157 2.770000e-84 324.0
24 TraesCS2A01G401200 chr2D 82.707 399 18 13 3 354 511674216 511674610 2.780000e-79 307.0
25 TraesCS2A01G401200 chr2D 85.374 294 11 13 355 637 511674645 511674917 7.850000e-70 276.0
26 TraesCS2A01G401200 chr2D 95.455 132 5 1 4069 4200 511690858 511690988 8.080000e-50 209.0
27 TraesCS2A01G401200 chr2D 90.164 122 8 4 5688 5807 511692211 511692330 1.070000e-33 156.0
28 TraesCS2A01G401200 chr2D 85.345 116 11 5 3960 4072 238158170 238158282 1.810000e-21 115.0
29 TraesCS2A01G401200 chr1A 90.753 465 33 4 2608 3072 68461394 68461848 5.270000e-171 612.0
30 TraesCS2A01G401200 chr1A 96.512 86 1 2 3988 4071 533694061 533693976 2.990000e-29 141.0
31 TraesCS2A01G401200 chr1A 84.298 121 13 5 3954 4070 578519924 578520042 6.520000e-21 113.0
32 TraesCS2A01G401200 chr1A 80.488 123 24 0 1634 1756 350400269 350400147 2.360000e-15 95.3
33 TraesCS2A01G401200 chr1A 97.436 39 1 0 6962 7000 532788217 532788179 5.150000e-07 67.6
34 TraesCS2A01G401200 chr1D 87.226 274 19 8 2601 2872 69199795 69200054 1.680000e-76 298.0
35 TraesCS2A01G401200 chr1D 80.645 124 22 2 1634 1756 278109820 278109698 2.360000e-15 95.3
36 TraesCS2A01G401200 chr6B 75.780 545 86 31 6166 6698 485542395 485542905 4.790000e-57 233.0
37 TraesCS2A01G401200 chr6B 91.509 106 6 2 3988 4090 512256619 512256514 8.310000e-30 143.0
38 TraesCS2A01G401200 chr6D 75.218 573 96 30 6166 6727 335063247 335062710 6.200000e-56 230.0
39 TraesCS2A01G401200 chr6A 75.458 546 86 31 6166 6698 474328186 474327676 1.040000e-53 222.0
40 TraesCS2A01G401200 chr6A 94.872 39 1 1 6960 6997 603359163 603359201 8.610000e-05 60.2
41 TraesCS2A01G401200 chr1B 95.604 91 4 0 3981 4071 510225516 510225606 6.420000e-31 147.0
42 TraesCS2A01G401200 chr1B 100.000 59 0 0 5841 5899 60234735 60234677 8.430000e-20 110.0
43 TraesCS2A01G401200 chr1B 80.488 123 24 0 1634 1756 377969155 377969033 2.360000e-15 95.3
44 TraesCS2A01G401200 chr1B 94.872 39 2 0 6962 7000 497472872 497472910 2.390000e-05 62.1
45 TraesCS2A01G401200 chr1B 90.698 43 4 0 6958 7000 619550890 619550848 3.100000e-04 58.4
46 TraesCS2A01G401200 chr5B 96.552 87 1 1 3988 4072 62940407 62940321 8.310000e-30 143.0
47 TraesCS2A01G401200 chr5B 98.485 66 0 1 5833 5897 433527346 433527411 1.810000e-21 115.0
48 TraesCS2A01G401200 chr5B 95.652 69 1 2 5841 5909 306425514 306425448 8.430000e-20 110.0
49 TraesCS2A01G401200 chr3A 93.617 94 4 1 3981 4072 22230628 22230721 1.080000e-28 139.0
50 TraesCS2A01G401200 chr3A 87.719 114 10 4 3962 4072 32383924 32384036 6.470000e-26 130.0
51 TraesCS2A01G401200 chr3A 95.775 71 1 2 5841 5910 521712430 521712499 6.520000e-21 113.0
52 TraesCS2A01G401200 chr3A 94.444 72 2 2 5827 5898 19344098 19344167 8.430000e-20 110.0
53 TraesCS2A01G401200 chr4D 91.262 103 4 4 3978 4076 245478326 245478427 1.390000e-27 135.0
54 TraesCS2A01G401200 chr4D 91.262 103 4 4 3978 4076 282080044 282079943 1.390000e-27 135.0
55 TraesCS2A01G401200 chr3B 89.423 104 5 5 3971 4072 527239930 527240029 8.370000e-25 126.0
56 TraesCS2A01G401200 chr3B 88.073 109 6 5 3966 4072 52742832 52742935 1.080000e-23 122.0
57 TraesCS2A01G401200 chr3B 97.436 39 1 0 6962 7000 744584377 744584339 5.150000e-07 67.6
58 TraesCS2A01G401200 chr3B 97.436 39 1 0 6962 7000 746860876 746860914 5.150000e-07 67.6
59 TraesCS2A01G401200 chr3D 87.850 107 8 4 3971 4073 594890845 594890950 3.890000e-23 121.0
60 TraesCS2A01G401200 chr3D 100.000 63 0 0 5841 5903 423382606 423382544 5.040000e-22 117.0
61 TraesCS2A01G401200 chr3D 97.436 39 1 0 6962 7000 560327850 560327812 5.150000e-07 67.6
62 TraesCS2A01G401200 chr3D 94.872 39 2 0 6962 7000 515963400 515963362 2.390000e-05 62.1
63 TraesCS2A01G401200 chr4B 86.726 113 8 7 3961 4070 467102774 467102882 1.400000e-22 119.0
64 TraesCS2A01G401200 chr4B 97.015 67 0 2 5841 5907 328501189 328501253 2.340000e-20 111.0
65 TraesCS2A01G401200 chr4B 96.875 32 1 0 6972 7003 441675467 441675436 4.000000e-03 54.7
66 TraesCS2A01G401200 chr4B 96.875 32 1 0 6957 6988 644188837 644188868 4.000000e-03 54.7
67 TraesCS2A01G401200 chr7B 86.239 109 9 6 3972 4078 138261081 138260977 6.520000e-21 113.0
68 TraesCS2A01G401200 chr7B 77.692 130 26 3 1634 1761 80662386 80662258 8.550000e-10 76.8
69 TraesCS2A01G401200 chr5A 94.444 72 4 0 5841 5912 325690960 325690889 2.340000e-20 111.0
70 TraesCS2A01G401200 chr7D 78.462 130 25 3 1634 1761 119568768 119568640 1.840000e-11 82.4
71 TraesCS2A01G401200 chr7D 100.000 31 0 0 6958 6988 41325992 41326022 3.100000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G401200 chr2A 654906253 654914197 7944 False 4990.666667 14672 95.512667 1 7945 3 chr2A.!!$F5 7944
1 TraesCS2A01G401200 chr2B 600739014 600746753 7739 False 1188.750000 3398 89.456375 3 7945 8 chr2B.!!$F2 7942
2 TraesCS2A01G401200 chr2D 511687899 511694774 6875 False 1095.500000 2837 90.065875 906 7945 8 chr2D.!!$F3 7039
3 TraesCS2A01G401200 chr2D 511674216 511675157 941 False 302.333333 324 86.130333 3 924 3 chr2D.!!$F2 921
4 TraesCS2A01G401200 chr6B 485542395 485542905 510 False 233.000000 233 75.780000 6166 6698 1 chr6B.!!$F1 532
5 TraesCS2A01G401200 chr6D 335062710 335063247 537 True 230.000000 230 75.218000 6166 6727 1 chr6D.!!$R1 561
6 TraesCS2A01G401200 chr6A 474327676 474328186 510 True 222.000000 222 75.458000 6166 6698 1 chr6A.!!$R1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 771 0.107800 GCCATGCAAGAGAGCTCAGA 60.108 55.0 17.77 0.0 34.99 3.27 F
1036 1172 0.107752 CCTGCCTTCTTGCCTCTCTC 60.108 60.0 0.00 0.0 0.00 3.20 F
2550 2703 0.251297 CTGTTGGATGAGGTTGCCCA 60.251 55.0 0.00 0.0 0.00 5.36 F
3133 3303 0.032952 TTAGCACGCCTGAAACTCGT 59.967 50.0 0.00 0.0 36.84 4.18 F
3781 3955 0.035439 ACAAGGGGTTATGTCTGCCG 60.035 55.0 0.00 0.0 0.00 5.69 F
3861 4043 0.313672 TCATGTGAAAAAGGCCGTGC 59.686 50.0 0.00 0.0 0.00 5.34 F
5267 5504 0.035439 TGGGCACGATCCTCCTTTTC 60.035 55.0 0.00 0.0 0.00 2.29 F
5268 5505 0.035439 GGGCACGATCCTCCTTTTCA 60.035 55.0 0.00 0.0 0.00 2.69 F
6793 7118 0.034337 GGACTTGGTAGCGTTGGTGA 59.966 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 1988 0.249405 CAGAGAGGAATCAGCCGAGC 60.249 60.000 0.00 0.00 0.00 5.03 R
2573 2726 0.533032 AGGAGTAGCAACGAGAAGGC 59.467 55.000 0.00 0.00 0.00 4.35 R
4309 4535 0.609131 ACCCATGTAACCTGCAGTGC 60.609 55.000 13.81 8.58 0.00 4.40 R
5064 5296 1.804748 GTTCCCAAGACTAAAGCACCG 59.195 52.381 0.00 0.00 0.00 4.94 R
5248 5485 0.035439 GAAAAGGAGGATCGTGCCCA 60.035 55.000 3.06 0.00 34.37 5.36 R
5839 6106 2.316108 CAAACAAGTTGGGGTAGGCTT 58.684 47.619 7.96 0.00 33.18 4.35 R
6785 7110 1.069703 CACATCTTGCTGTCACCAACG 60.070 52.381 0.00 0.00 0.00 4.10 R
6853 7202 2.552315 TGCCTCAAAAGAACCGAACATC 59.448 45.455 0.00 0.00 0.00 3.06 R
7915 8381 1.226717 GAGGATCTGTGACGGCGTC 60.227 63.158 31.68 31.68 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 53 1.617322 CATCCCATCAAGCCATCAGG 58.383 55.000 0.00 0.00 38.23 3.86
197 205 2.029666 CCCGGCATCCACGAGATC 59.970 66.667 0.00 0.00 30.59 2.75
323 399 0.320374 TTCTCCGAAACGACTGGCAT 59.680 50.000 0.00 0.00 0.00 4.40
344 420 1.005037 GTCCGCCGGATCATGCATA 60.005 57.895 10.04 0.00 32.73 3.14
432 546 2.873288 GGCAGAGCTCGCCTTTTG 59.127 61.111 30.11 15.72 46.56 2.44
433 547 1.672356 GGCAGAGCTCGCCTTTTGA 60.672 57.895 30.11 0.00 46.56 2.69
434 548 1.499502 GCAGAGCTCGCCTTTTGAC 59.500 57.895 16.50 0.00 0.00 3.18
482 596 1.741770 CTCTCCGTGCGGGAAAAGG 60.742 63.158 10.94 0.00 46.61 3.11
488 602 2.041115 GTGCGGGAAAAGGAGGAGC 61.041 63.158 0.00 0.00 0.00 4.70
489 603 2.438614 GCGGGAAAAGGAGGAGCC 60.439 66.667 0.00 0.00 0.00 4.70
490 604 3.077907 CGGGAAAAGGAGGAGCCA 58.922 61.111 0.00 0.00 40.02 4.75
491 605 1.078143 CGGGAAAAGGAGGAGCCAG 60.078 63.158 0.00 0.00 40.02 4.85
493 607 1.379176 GGAAAAGGAGGAGCCAGCC 60.379 63.158 0.00 0.00 40.02 4.85
494 608 1.379176 GAAAAGGAGGAGCCAGCCC 60.379 63.158 0.00 0.00 40.02 5.19
495 609 2.142292 GAAAAGGAGGAGCCAGCCCA 62.142 60.000 0.00 0.00 40.02 5.36
496 610 2.147433 AAAAGGAGGAGCCAGCCCAG 62.147 60.000 0.00 0.00 40.02 4.45
499 613 4.486503 GAGGAGCCAGCCCAGCAG 62.487 72.222 0.00 0.00 0.00 4.24
504 618 4.816984 GCCAGCCCAGCAGCAGAT 62.817 66.667 0.00 0.00 34.23 2.90
505 619 2.516460 CCAGCCCAGCAGCAGATC 60.516 66.667 0.00 0.00 34.23 2.75
506 620 2.895865 CAGCCCAGCAGCAGATCG 60.896 66.667 0.00 0.00 34.23 3.69
507 621 4.172512 AGCCCAGCAGCAGATCGG 62.173 66.667 0.00 0.00 34.23 4.18
528 650 4.778415 GCGGACGAGCGAGCAAGA 62.778 66.667 0.00 0.00 0.00 3.02
533 655 0.522495 GACGAGCGAGCAAGAGAGAC 60.522 60.000 0.00 0.00 0.00 3.36
541 663 0.320247 AGCAAGAGAGACAACGGCAG 60.320 55.000 0.00 0.00 0.00 4.85
563 690 4.295119 GCGGGGATACGATGCGGT 62.295 66.667 0.00 0.00 35.47 5.68
582 709 0.591170 TAACAAGCGGACAAAGCAGC 59.409 50.000 0.00 0.00 37.01 5.25
601 729 4.021925 AGGAAAAGCCTCGGCGCT 62.022 61.111 7.64 0.00 46.97 5.92
642 770 0.392595 TGCCATGCAAGAGAGCTCAG 60.393 55.000 17.77 3.79 34.76 3.35
643 771 0.107800 GCCATGCAAGAGAGCTCAGA 60.108 55.000 17.77 0.00 34.99 3.27
644 772 1.942677 CCATGCAAGAGAGCTCAGAG 58.057 55.000 17.77 3.78 34.99 3.35
645 773 1.481363 CCATGCAAGAGAGCTCAGAGA 59.519 52.381 17.77 0.00 34.99 3.10
646 774 2.482316 CCATGCAAGAGAGCTCAGAGAG 60.482 54.545 17.77 2.65 34.99 3.20
647 775 2.212812 TGCAAGAGAGCTCAGAGAGA 57.787 50.000 17.77 0.00 34.99 3.10
661 789 4.871822 TCAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
662 790 4.892345 TCAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
663 791 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
664 792 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
719 848 2.613506 CCACTTCCGTTTCACCGCC 61.614 63.158 0.00 0.00 0.00 6.13
720 849 2.281276 ACTTCCGTTTCACCGCCC 60.281 61.111 0.00 0.00 0.00 6.13
721 850 3.053896 CTTCCGTTTCACCGCCCC 61.054 66.667 0.00 0.00 0.00 5.80
722 851 4.992511 TTCCGTTTCACCGCCCCG 62.993 66.667 0.00 0.00 0.00 5.73
746 875 4.379243 CACGCCGCTCCACCTTCT 62.379 66.667 0.00 0.00 0.00 2.85
747 876 3.626924 ACGCCGCTCCACCTTCTT 61.627 61.111 0.00 0.00 0.00 2.52
748 877 2.358737 CGCCGCTCCACCTTCTTT 60.359 61.111 0.00 0.00 0.00 2.52
749 878 2.391389 CGCCGCTCCACCTTCTTTC 61.391 63.158 0.00 0.00 0.00 2.62
750 879 1.003233 GCCGCTCCACCTTCTTTCT 60.003 57.895 0.00 0.00 0.00 2.52
885 1017 1.856265 CTTCGCGGCCAAGCTTTCTT 61.856 55.000 6.13 0.00 34.40 2.52
896 1028 3.440415 CTTTCTTTCGGCCCCGGC 61.440 66.667 6.90 0.00 40.25 6.13
958 1090 3.127895 TGGTTGAAGAAAACTGGTTGACG 59.872 43.478 0.00 0.00 0.00 4.35
961 1093 1.673920 GAAGAAAACTGGTTGACGCCA 59.326 47.619 0.00 0.00 36.97 5.69
1029 1161 1.291272 CTTTGCCCTGCCTTCTTGC 59.709 57.895 0.00 0.00 0.00 4.01
1036 1172 0.107752 CCTGCCTTCTTGCCTCTCTC 60.108 60.000 0.00 0.00 0.00 3.20
1054 1190 0.681564 TCTCTCGCTTCTCCTCCCAC 60.682 60.000 0.00 0.00 0.00 4.61
1055 1191 1.671901 CTCTCGCTTCTCCTCCCACC 61.672 65.000 0.00 0.00 0.00 4.61
1056 1192 1.984570 CTCGCTTCTCCTCCCACCA 60.985 63.158 0.00 0.00 0.00 4.17
1057 1193 1.954362 CTCGCTTCTCCTCCCACCAG 61.954 65.000 0.00 0.00 0.00 4.00
1075 1213 0.914417 AGATGCCGAGGGAAAAGGGA 60.914 55.000 0.00 0.00 0.00 4.20
1098 1236 1.324383 GCCTTTTGGGGTTTCTTCGA 58.676 50.000 0.00 0.00 40.82 3.71
1099 1237 1.000607 GCCTTTTGGGGTTTCTTCGAC 60.001 52.381 0.00 0.00 40.82 4.20
1100 1238 1.265905 CCTTTTGGGGTTTCTTCGACG 59.734 52.381 0.00 0.00 35.46 5.12
1101 1239 1.265905 CTTTTGGGGTTTCTTCGACGG 59.734 52.381 0.00 0.00 0.00 4.79
1102 1240 1.167781 TTTGGGGTTTCTTCGACGGC 61.168 55.000 0.00 0.00 0.00 5.68
1103 1241 3.116531 GGGGTTTCTTCGACGGCG 61.117 66.667 2.87 2.87 39.35 6.46
1154 1298 2.086869 TGAACGAGTTCCCCTACTACG 58.913 52.381 12.76 0.00 38.77 3.51
1240 1384 1.344942 GCGCACTCTTACTCCACGTG 61.345 60.000 9.08 9.08 0.00 4.49
1241 1385 1.344942 CGCACTCTTACTCCACGTGC 61.345 60.000 10.91 0.00 45.39 5.34
1277 1424 2.226674 CTCGGGGTTTCTTCTTCTTTGC 59.773 50.000 0.00 0.00 0.00 3.68
1325 1472 4.098807 AGGCGTGCCTTTTTCTTTTCTTTA 59.901 37.500 7.79 0.00 45.70 1.85
1481 1628 4.803426 GCCAGAGCTCGACCACCG 62.803 72.222 8.37 0.00 40.25 4.94
1533 1680 2.040464 ACCCCTCGGCAGATCCAT 60.040 61.111 0.00 0.00 34.01 3.41
1566 1713 3.202001 GCGCACGCACCCATACAT 61.202 61.111 10.65 0.00 41.49 2.29
1567 1714 2.760159 GCGCACGCACCCATACATT 61.760 57.895 10.65 0.00 41.49 2.71
1568 1715 1.433053 GCGCACGCACCCATACATTA 61.433 55.000 10.65 0.00 41.49 1.90
1569 1716 1.010580 CGCACGCACCCATACATTAA 58.989 50.000 0.00 0.00 0.00 1.40
1570 1717 1.398739 CGCACGCACCCATACATTAAA 59.601 47.619 0.00 0.00 0.00 1.52
1571 1718 2.159503 CGCACGCACCCATACATTAAAA 60.160 45.455 0.00 0.00 0.00 1.52
1572 1719 3.670895 CGCACGCACCCATACATTAAAAA 60.671 43.478 0.00 0.00 0.00 1.94
1591 1738 4.871933 AAAAAGGAAATTCCGCTCATGT 57.128 36.364 6.35 0.00 42.75 3.21
1596 1743 1.732259 GAAATTCCGCTCATGTCGTGT 59.268 47.619 8.72 0.00 0.00 4.49
1597 1744 1.359848 AATTCCGCTCATGTCGTGTC 58.640 50.000 8.72 0.00 0.00 3.67
1599 1746 1.811645 TTCCGCTCATGTCGTGTCCA 61.812 55.000 8.72 0.00 0.00 4.02
1607 1754 3.130633 TCATGTCGTGTCCACTTCTTTG 58.869 45.455 0.00 0.00 0.00 2.77
1626 1779 0.317603 GATCATGCATGCCGCTGTTC 60.318 55.000 22.25 10.61 43.06 3.18
1758 1911 1.781555 CGCACGCAGTTGAAGGTAG 59.218 57.895 0.00 0.00 41.61 3.18
1760 1913 0.512952 GCACGCAGTTGAAGGTAGTG 59.487 55.000 0.00 0.00 41.61 2.74
1762 1915 2.688507 CACGCAGTTGAAGGTAGTGAT 58.311 47.619 0.00 0.00 41.61 3.06
1763 1916 3.067106 CACGCAGTTGAAGGTAGTGATT 58.933 45.455 0.00 0.00 41.61 2.57
1765 1918 3.006967 ACGCAGTTGAAGGTAGTGATTCT 59.993 43.478 0.00 0.00 37.78 2.40
1766 1919 3.997021 CGCAGTTGAAGGTAGTGATTCTT 59.003 43.478 0.00 0.00 0.00 2.52
1767 1920 5.168569 CGCAGTTGAAGGTAGTGATTCTTA 58.831 41.667 0.00 0.00 0.00 2.10
1768 1921 5.637810 CGCAGTTGAAGGTAGTGATTCTTAA 59.362 40.000 0.00 0.00 0.00 1.85
1769 1922 6.401153 CGCAGTTGAAGGTAGTGATTCTTAAC 60.401 42.308 0.00 0.00 0.00 2.01
1770 1923 6.128254 GCAGTTGAAGGTAGTGATTCTTAACC 60.128 42.308 0.00 0.00 0.00 2.85
1771 1924 6.934645 CAGTTGAAGGTAGTGATTCTTAACCA 59.065 38.462 0.00 0.00 32.43 3.67
1772 1925 7.444183 CAGTTGAAGGTAGTGATTCTTAACCAA 59.556 37.037 0.00 0.00 32.43 3.67
1773 1926 8.164070 AGTTGAAGGTAGTGATTCTTAACCAAT 58.836 33.333 0.00 0.00 32.43 3.16
1774 1927 8.451748 GTTGAAGGTAGTGATTCTTAACCAATC 58.548 37.037 0.00 0.00 32.43 2.67
1775 1928 7.918076 TGAAGGTAGTGATTCTTAACCAATCT 58.082 34.615 0.00 0.00 32.32 2.40
1798 1951 1.754803 TCTTATCGACCGCTCCAACAT 59.245 47.619 0.00 0.00 0.00 2.71
1810 1963 2.869192 GCTCCAACATTCTCGATCCTTC 59.131 50.000 0.00 0.00 0.00 3.46
1811 1964 3.431486 GCTCCAACATTCTCGATCCTTCT 60.431 47.826 0.00 0.00 0.00 2.85
1812 1965 4.764172 CTCCAACATTCTCGATCCTTCTT 58.236 43.478 0.00 0.00 0.00 2.52
1813 1966 4.759782 TCCAACATTCTCGATCCTTCTTC 58.240 43.478 0.00 0.00 0.00 2.87
1814 1967 4.222810 TCCAACATTCTCGATCCTTCTTCA 59.777 41.667 0.00 0.00 0.00 3.02
1815 1968 4.331168 CCAACATTCTCGATCCTTCTTCAC 59.669 45.833 0.00 0.00 0.00 3.18
1818 1971 3.876274 TTCTCGATCCTTCTTCACTGG 57.124 47.619 0.00 0.00 0.00 4.00
1819 1972 2.808919 TCTCGATCCTTCTTCACTGGT 58.191 47.619 0.00 0.00 0.00 4.00
1820 1973 2.493675 TCTCGATCCTTCTTCACTGGTG 59.506 50.000 0.00 0.00 0.00 4.17
1821 1974 1.066858 TCGATCCTTCTTCACTGGTGC 60.067 52.381 0.00 0.00 0.00 5.01
1822 1975 1.338105 CGATCCTTCTTCACTGGTGCA 60.338 52.381 0.00 0.00 0.00 4.57
1823 1976 2.079925 GATCCTTCTTCACTGGTGCAC 58.920 52.381 8.80 8.80 0.00 4.57
1824 1977 1.131638 TCCTTCTTCACTGGTGCACT 58.868 50.000 17.98 0.00 0.00 4.40
1825 1978 1.490490 TCCTTCTTCACTGGTGCACTT 59.510 47.619 17.98 0.00 0.00 3.16
1826 1979 1.876156 CCTTCTTCACTGGTGCACTTC 59.124 52.381 17.98 0.83 0.00 3.01
1827 1980 2.486191 CCTTCTTCACTGGTGCACTTCT 60.486 50.000 17.98 0.00 0.00 2.85
1828 1981 3.209410 CTTCTTCACTGGTGCACTTCTT 58.791 45.455 17.98 0.00 0.00 2.52
1829 1982 2.564771 TCTTCACTGGTGCACTTCTTG 58.435 47.619 17.98 9.15 0.00 3.02
1830 1983 2.170397 TCTTCACTGGTGCACTTCTTGA 59.830 45.455 17.98 11.33 0.00 3.02
1831 1984 1.953559 TCACTGGTGCACTTCTTGAC 58.046 50.000 17.98 0.00 0.00 3.18
1832 1985 1.209261 TCACTGGTGCACTTCTTGACA 59.791 47.619 17.98 3.04 0.00 3.58
1833 1986 1.331756 CACTGGTGCACTTCTTGACAC 59.668 52.381 17.98 0.00 33.77 3.67
1834 1987 0.583438 CTGGTGCACTTCTTGACACG 59.417 55.000 17.98 0.00 34.74 4.49
1835 1988 0.813610 TGGTGCACTTCTTGACACGG 60.814 55.000 17.98 0.00 34.74 4.94
1836 1989 1.279840 GTGCACTTCTTGACACGGC 59.720 57.895 10.32 0.00 0.00 5.68
1837 1990 1.146041 TGCACTTCTTGACACGGCT 59.854 52.632 0.00 0.00 0.00 5.52
1949 2102 2.283529 GCCGAGAACCTGTCCCTCA 61.284 63.158 0.00 0.00 0.00 3.86
1957 2110 2.930019 CTGTCCCTCAGGGTGGCA 60.930 66.667 10.50 6.93 44.74 4.92
2124 2277 1.284785 CCTTGGCAGGTCCATTTCCTA 59.715 52.381 0.00 0.00 46.04 2.94
2241 2394 1.973812 GTCCCTCCAGCCAAACAGC 60.974 63.158 0.00 0.00 0.00 4.40
2258 2411 2.967076 CGGGAATGGCGATCACGG 60.967 66.667 6.13 0.00 39.96 4.94
2371 2524 2.288763 GCCGTTGTGGATTCCAAATGTT 60.289 45.455 7.05 0.00 42.00 2.71
2434 2587 2.820787 AGTGTACTTGAGGACCTTCTCG 59.179 50.000 0.00 0.00 36.61 4.04
2550 2703 0.251297 CTGTTGGATGAGGTTGCCCA 60.251 55.000 0.00 0.00 0.00 5.36
2551 2704 0.409092 TGTTGGATGAGGTTGCCCAT 59.591 50.000 0.00 0.00 0.00 4.00
2552 2705 1.106285 GTTGGATGAGGTTGCCCATC 58.894 55.000 0.00 0.00 38.66 3.51
2553 2706 0.394216 TTGGATGAGGTTGCCCATCG 60.394 55.000 0.00 0.00 39.90 3.84
2554 2707 1.224592 GGATGAGGTTGCCCATCGT 59.775 57.895 0.00 0.00 39.90 3.73
2555 2708 0.815615 GGATGAGGTTGCCCATCGTC 60.816 60.000 0.00 0.20 39.90 4.20
2556 2709 1.153369 ATGAGGTTGCCCATCGTCG 60.153 57.895 0.00 0.00 0.00 5.12
2557 2710 1.899437 ATGAGGTTGCCCATCGTCGT 61.899 55.000 0.00 0.00 0.00 4.34
2560 2713 1.810030 GGTTGCCCATCGTCGTCTC 60.810 63.158 0.00 0.00 0.00 3.36
2561 2714 1.080093 GTTGCCCATCGTCGTCTCA 60.080 57.895 0.00 0.00 0.00 3.27
2562 2715 1.080093 TTGCCCATCGTCGTCTCAC 60.080 57.895 0.00 0.00 0.00 3.51
2563 2716 1.532604 TTGCCCATCGTCGTCTCACT 61.533 55.000 0.00 0.00 0.00 3.41
2564 2717 1.517257 GCCCATCGTCGTCTCACTG 60.517 63.158 0.00 0.00 0.00 3.66
2565 2718 1.883732 CCCATCGTCGTCTCACTGT 59.116 57.895 0.00 0.00 0.00 3.55
2566 2719 0.456824 CCCATCGTCGTCTCACTGTG 60.457 60.000 0.17 0.17 0.00 3.66
2567 2720 1.073216 CCATCGTCGTCTCACTGTGC 61.073 60.000 2.12 0.00 0.00 4.57
2568 2721 1.073216 CATCGTCGTCTCACTGTGCC 61.073 60.000 2.12 0.00 0.00 5.01
2573 2726 2.348998 GTCTCACTGTGCCCCCTG 59.651 66.667 2.12 0.00 0.00 4.45
2588 2741 0.741221 CCCTGCCTTCTCGTTGCTAC 60.741 60.000 0.00 0.00 0.00 3.58
2592 2745 0.533032 GCCTTCTCGTTGCTACTCCT 59.467 55.000 0.00 0.00 0.00 3.69
2642 2795 2.072298 GAAATCTTGCTGCAGAGACGT 58.928 47.619 20.43 3.67 0.00 4.34
2775 2928 6.156083 TGTTGATCAGTATCCAGTGTCCATAA 59.844 38.462 0.00 0.00 0.00 1.90
2781 2934 0.391130 TCCAGTGTCCATAAGCACGC 60.391 55.000 0.00 0.00 40.26 5.34
2789 2942 3.244078 TGTCCATAAGCACGCCTTATAGG 60.244 47.826 8.18 11.05 43.27 2.57
2807 2960 8.148351 CCTTATAGGCACTTAATTGTACTAGCA 58.852 37.037 0.00 0.00 41.75 3.49
2808 2961 9.712305 CTTATAGGCACTTAATTGTACTAGCAT 57.288 33.333 0.00 0.00 41.75 3.79
2863 3016 2.042104 CAAAGCTGCAGGTTCTTTCG 57.958 50.000 29.77 13.20 34.26 3.46
2876 3029 1.933021 TCTTTCGCCTCTTGTCCCTA 58.067 50.000 0.00 0.00 0.00 3.53
2899 3052 1.150135 AGGGAGGTGACCTTTCTCAGA 59.850 52.381 5.21 0.00 33.64 3.27
2909 3062 5.009010 GTGACCTTTCTCAGATTCTGCAAAA 59.991 40.000 8.89 10.05 0.00 2.44
2926 3079 3.792401 CAAAAAGTTGGGTGAGGGTTTC 58.208 45.455 0.00 0.00 0.00 2.78
2961 3114 3.524095 TGTTTCCATGGATGAGTTGGT 57.476 42.857 17.06 0.00 0.00 3.67
3092 3261 6.440647 ACACCATCCTCTCTACATTGTTCTTA 59.559 38.462 0.00 0.00 0.00 2.10
3094 3263 6.897966 ACCATCCTCTCTACATTGTTCTTAGA 59.102 38.462 0.00 0.00 0.00 2.10
3098 3267 8.595362 TCCTCTCTACATTGTTCTTAGATTGA 57.405 34.615 0.00 0.00 0.00 2.57
3124 3294 0.606401 ACAGCAATGTTAGCACGCCT 60.606 50.000 0.00 0.00 0.00 5.52
3125 3295 0.179181 CAGCAATGTTAGCACGCCTG 60.179 55.000 0.00 0.00 0.00 4.85
3133 3303 0.032952 TTAGCACGCCTGAAACTCGT 59.967 50.000 0.00 0.00 36.84 4.18
3138 3308 2.383527 CGCCTGAAACTCGTCTGCC 61.384 63.158 0.00 0.00 0.00 4.85
3144 3314 2.229062 CTGAAACTCGTCTGCCTCTGTA 59.771 50.000 0.00 0.00 0.00 2.74
3146 3316 3.119459 TGAAACTCGTCTGCCTCTGTATC 60.119 47.826 0.00 0.00 0.00 2.24
3151 3321 2.101415 TCGTCTGCCTCTGTATCCATTG 59.899 50.000 0.00 0.00 0.00 2.82
3159 3329 7.290014 TCTGCCTCTGTATCCATTGATTAGTAA 59.710 37.037 0.00 0.00 32.18 2.24
3160 3330 7.977818 TGCCTCTGTATCCATTGATTAGTAAT 58.022 34.615 0.00 0.00 32.18 1.89
3163 3333 9.593134 CCTCTGTATCCATTGATTAGTAATAGC 57.407 37.037 0.00 0.00 32.18 2.97
3211 3381 1.045407 TCAACCGTGCTAGTTCCACT 58.955 50.000 0.00 0.00 0.00 4.00
3220 3390 1.537202 GCTAGTTCCACTGGTTTGCTG 59.463 52.381 0.00 0.00 0.00 4.41
3221 3391 1.537202 CTAGTTCCACTGGTTTGCTGC 59.463 52.381 0.00 0.00 0.00 5.25
3222 3392 0.106519 AGTTCCACTGGTTTGCTGCT 60.107 50.000 0.00 0.00 0.00 4.24
3223 3393 0.312102 GTTCCACTGGTTTGCTGCTC 59.688 55.000 0.00 0.00 0.00 4.26
3224 3394 0.183492 TTCCACTGGTTTGCTGCTCT 59.817 50.000 0.00 0.00 0.00 4.09
3225 3395 1.055849 TCCACTGGTTTGCTGCTCTA 58.944 50.000 0.00 0.00 0.00 2.43
3226 3396 1.630369 TCCACTGGTTTGCTGCTCTAT 59.370 47.619 0.00 0.00 0.00 1.98
3227 3397 1.741706 CCACTGGTTTGCTGCTCTATG 59.258 52.381 0.00 0.00 0.00 2.23
3228 3398 1.131883 CACTGGTTTGCTGCTCTATGC 59.868 52.381 0.00 0.00 43.25 3.14
3244 3414 7.414814 GCTCTATGCATATGATGATCATCAG 57.585 40.000 34.80 25.10 44.99 2.90
3245 3415 6.073494 GCTCTATGCATATGATGATCATCAGC 60.073 42.308 34.80 31.41 44.99 4.26
3246 3416 8.167081 GCTCTATGCATATGATGATCATCAGCT 61.167 40.741 34.80 24.84 44.99 4.24
3252 3422 2.572290 TGATGATCATCAGCTGGCTTG 58.428 47.619 30.27 9.70 42.42 4.01
3275 3445 1.451651 GCGAAATGCAAGTTTGTTCCG 59.548 47.619 0.00 0.00 45.45 4.30
3281 3451 1.673920 TGCAAGTTTGTTCCGGTTCTC 59.326 47.619 0.00 0.00 0.00 2.87
3282 3452 1.673920 GCAAGTTTGTTCCGGTTCTCA 59.326 47.619 0.00 0.00 0.00 3.27
3314 3484 6.769822 ACATGAGAATGTTCTTTTCAGAGTGT 59.230 34.615 0.00 0.00 37.73 3.55
3355 3527 4.081917 TGTTATTGACTGATCACCGTGCTA 60.082 41.667 0.00 0.00 33.38 3.49
3426 3598 0.698238 TATCTGTGGTTGCAAGCCCT 59.302 50.000 24.81 8.18 0.00 5.19
3447 3619 1.135527 CCACCGCGAGTTAGGTAATCA 59.864 52.381 8.23 0.00 39.00 2.57
3549 3721 7.486232 GCATGTGCCTTTTCTTAGTTTAATCTC 59.514 37.037 0.00 0.00 34.31 2.75
3555 3727 7.462988 GCCTTTTCTTAGTTTAATCTCGAGTCG 60.463 40.741 13.13 6.09 0.00 4.18
3568 3740 3.057526 TCTCGAGTCGAATTCTTGAAGCA 60.058 43.478 17.27 0.00 34.74 3.91
3574 3746 6.360681 CGAGTCGAATTCTTGAAGCAAAAATT 59.639 34.615 6.73 0.00 0.00 1.82
3624 3796 8.546597 TCAATTTGTCTCATTGTCGAGAATTA 57.453 30.769 4.83 0.00 43.51 1.40
3665 3837 8.463930 AAGTCTATTGTTTGTCTTCATGGAAA 57.536 30.769 0.00 0.00 0.00 3.13
3681 3853 9.884465 CTTCATGGAAAGTACTTTTAGTCTTTG 57.116 33.333 21.40 12.21 31.01 2.77
3726 3900 6.795098 TTTTGCACATCTAATTCACGTACT 57.205 33.333 0.00 0.00 0.00 2.73
3781 3955 0.035439 ACAAGGGGTTATGTCTGCCG 60.035 55.000 0.00 0.00 0.00 5.69
3784 3958 0.696501 AGGGGTTATGTCTGCCGTTT 59.303 50.000 0.00 0.00 0.00 3.60
3810 3984 2.715864 CTTGTCACAAAGGCCGTGCG 62.716 60.000 9.20 0.56 34.27 5.34
3815 3997 4.980903 CAAAGGCCGTGCGTGTGC 62.981 66.667 0.00 0.00 43.20 4.57
3832 4014 2.098934 TGTGCAAAACGATCAGCTGTTT 59.901 40.909 14.67 3.76 39.84 2.83
3848 4030 6.536224 TCAGCTGTTTGTATATCAGTCATGTG 59.464 38.462 14.67 0.00 0.00 3.21
3850 4032 7.064966 CAGCTGTTTGTATATCAGTCATGTGAA 59.935 37.037 5.25 0.00 0.00 3.18
3851 4033 7.607607 AGCTGTTTGTATATCAGTCATGTGAAA 59.392 33.333 0.00 0.00 0.00 2.69
3852 4034 8.236586 GCTGTTTGTATATCAGTCATGTGAAAA 58.763 33.333 0.00 0.00 0.00 2.29
3855 4037 9.559958 GTTTGTATATCAGTCATGTGAAAAAGG 57.440 33.333 0.00 0.00 0.00 3.11
3856 4038 7.320443 TGTATATCAGTCATGTGAAAAAGGC 57.680 36.000 0.00 0.00 0.00 4.35
3857 4039 5.841957 ATATCAGTCATGTGAAAAAGGCC 57.158 39.130 0.00 0.00 0.00 5.19
3858 4040 1.879380 TCAGTCATGTGAAAAAGGCCG 59.121 47.619 0.00 0.00 0.00 6.13
3859 4041 1.608590 CAGTCATGTGAAAAAGGCCGT 59.391 47.619 0.00 0.00 0.00 5.68
3860 4042 1.608590 AGTCATGTGAAAAAGGCCGTG 59.391 47.619 0.00 0.00 0.00 4.94
3861 4043 0.313672 TCATGTGAAAAAGGCCGTGC 59.686 50.000 0.00 0.00 0.00 5.34
3862 4044 0.314935 CATGTGAAAAAGGCCGTGCT 59.685 50.000 0.00 0.00 0.00 4.40
3863 4045 1.539388 CATGTGAAAAAGGCCGTGCTA 59.461 47.619 0.00 0.00 0.00 3.49
3864 4046 1.904287 TGTGAAAAAGGCCGTGCTAT 58.096 45.000 0.00 0.00 0.00 2.97
3865 4047 2.235016 TGTGAAAAAGGCCGTGCTATT 58.765 42.857 0.00 0.00 0.00 1.73
3866 4048 2.625790 TGTGAAAAAGGCCGTGCTATTT 59.374 40.909 0.00 0.00 0.00 1.40
3867 4049 3.821600 TGTGAAAAAGGCCGTGCTATTTA 59.178 39.130 0.00 0.00 0.00 1.40
3868 4050 4.083003 TGTGAAAAAGGCCGTGCTATTTAG 60.083 41.667 0.00 0.00 0.00 1.85
3869 4051 4.076394 TGAAAAAGGCCGTGCTATTTAGT 58.924 39.130 0.00 0.00 0.00 2.24
3889 4071 8.990163 TTTAGTTGGTTTCCTGTTTATCTTCT 57.010 30.769 0.00 0.00 0.00 2.85
3895 4077 7.461749 TGGTTTCCTGTTTATCTTCTCTTCAT 58.538 34.615 0.00 0.00 0.00 2.57
3897 4079 7.607991 GGTTTCCTGTTTATCTTCTCTTCATCA 59.392 37.037 0.00 0.00 0.00 3.07
3937 4119 2.161855 GATGCAATCAACAGTGTGGGA 58.838 47.619 0.00 0.00 44.70 4.37
3992 4174 8.942338 TGTAATCATTCAGTACATGTTACTCC 57.058 34.615 2.30 0.00 30.52 3.85
3993 4175 7.985184 TGTAATCATTCAGTACATGTTACTCCC 59.015 37.037 2.30 0.00 30.52 4.30
3994 4176 6.814954 ATCATTCAGTACATGTTACTCCCT 57.185 37.500 2.30 0.00 0.00 4.20
3995 4177 6.222038 TCATTCAGTACATGTTACTCCCTC 57.778 41.667 2.30 0.00 0.00 4.30
3996 4178 5.958380 TCATTCAGTACATGTTACTCCCTCT 59.042 40.000 2.30 0.00 0.00 3.69
3997 4179 7.123383 TCATTCAGTACATGTTACTCCCTCTA 58.877 38.462 2.30 0.00 0.00 2.43
3998 4180 7.618117 TCATTCAGTACATGTTACTCCCTCTAA 59.382 37.037 2.30 0.00 0.00 2.10
3999 4181 7.786046 TTCAGTACATGTTACTCCCTCTAAA 57.214 36.000 2.30 0.00 0.00 1.85
4000 4182 7.406031 TCAGTACATGTTACTCCCTCTAAAG 57.594 40.000 2.30 0.00 0.00 1.85
4001 4183 7.179966 TCAGTACATGTTACTCCCTCTAAAGA 58.820 38.462 2.30 0.00 0.00 2.52
4002 4184 7.672660 TCAGTACATGTTACTCCCTCTAAAGAA 59.327 37.037 2.30 0.00 0.00 2.52
4003 4185 8.311836 CAGTACATGTTACTCCCTCTAAAGAAA 58.688 37.037 2.30 0.00 0.00 2.52
4004 4186 9.047947 AGTACATGTTACTCCCTCTAAAGAAAT 57.952 33.333 2.30 0.00 0.00 2.17
4014 4196 9.495382 ACTCCCTCTAAAGAAATATAAGAGTGT 57.505 33.333 0.00 0.00 33.38 3.55
4064 4246 8.943909 AACACTCTTATATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
4065 4247 7.498443 ACACTCTTATATTTCTTTACGGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
4066 4248 7.343833 ACACTCTTATATTTCTTTACGGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
4067 4249 7.868415 CACTCTTATATTTCTTTACGGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
4309 4535 5.463286 TGCTAACAGATGCACTTGAATTTG 58.537 37.500 6.30 0.00 33.94 2.32
4383 4609 2.494530 GCTCTACCGGCCTCTCCTG 61.495 68.421 0.00 0.00 0.00 3.86
4528 4754 6.442024 ACATCTATGTGGCATGCTTTGCATA 61.442 40.000 18.92 17.39 42.82 3.14
4677 4909 1.471684 GCTGAATGGAGCAAACTGGAG 59.528 52.381 0.00 0.00 38.95 3.86
4720 4952 1.072806 AGGATGTGCGTATCATGGCAT 59.927 47.619 0.00 0.00 41.83 4.40
4962 5194 8.091449 GCCACTGTGAGTATTATCTATAGCTTT 58.909 37.037 9.86 0.00 0.00 3.51
4994 5226 4.938226 AGTTGTTGCTCCTTCTATGCTTAC 59.062 41.667 0.00 0.00 0.00 2.34
5064 5296 4.984161 GTGATCTAGAAGCTGAGCTCATTC 59.016 45.833 18.63 18.50 38.25 2.67
5211 5448 6.141083 TGGGTCAGGCATAGTTAATAGTACT 58.859 40.000 0.00 0.00 0.00 2.73
5239 5476 0.795735 GCTGTGTGCATCGCAATGAC 60.796 55.000 0.00 0.00 41.47 3.06
5248 5485 0.747255 ATCGCAATGACGTAGAGGCT 59.253 50.000 0.00 0.00 0.00 4.58
5253 5490 1.264749 AATGACGTAGAGGCTGGGCA 61.265 55.000 0.00 0.00 0.00 5.36
5254 5491 1.961180 ATGACGTAGAGGCTGGGCAC 61.961 60.000 0.00 0.00 0.00 5.01
5267 5504 0.035439 TGGGCACGATCCTCCTTTTC 60.035 55.000 0.00 0.00 0.00 2.29
5268 5505 0.035439 GGGCACGATCCTCCTTTTCA 60.035 55.000 0.00 0.00 0.00 2.69
5269 5506 1.613255 GGGCACGATCCTCCTTTTCAA 60.613 52.381 0.00 0.00 0.00 2.69
5270 5507 2.159382 GGCACGATCCTCCTTTTCAAA 58.841 47.619 0.00 0.00 0.00 2.69
5316 5553 2.205911 TGACGAATGAAGCGTGTGAAA 58.794 42.857 0.00 0.00 42.77 2.69
5497 5737 9.988350 GTTTATCAATGGAAGTACACACATAAG 57.012 33.333 0.00 0.00 0.00 1.73
5603 5843 5.590530 TTATTATTTTCTTGGGCACGCAT 57.409 34.783 0.00 0.00 0.00 4.73
5652 5892 3.567478 AACAGCAAGAGACTGAAGGTT 57.433 42.857 0.00 0.00 38.55 3.50
5677 5917 7.001674 TGGAAGTAAATTAGGATGTGTGTTGT 58.998 34.615 0.00 0.00 0.00 3.32
5678 5918 8.158132 TGGAAGTAAATTAGGATGTGTGTTGTA 58.842 33.333 0.00 0.00 0.00 2.41
5679 5919 9.174166 GGAAGTAAATTAGGATGTGTGTTGTAT 57.826 33.333 0.00 0.00 0.00 2.29
5681 5921 8.420374 AGTAAATTAGGATGTGTGTTGTATCG 57.580 34.615 0.00 0.00 0.00 2.92
5682 5922 8.255206 AGTAAATTAGGATGTGTGTTGTATCGA 58.745 33.333 0.00 0.00 0.00 3.59
5684 5924 7.539712 AATTAGGATGTGTGTTGTATCGAAG 57.460 36.000 0.00 0.00 0.00 3.79
5685 5925 4.537135 AGGATGTGTGTTGTATCGAAGT 57.463 40.909 0.00 0.00 0.00 3.01
5725 5974 5.940192 ACTTTTACGATTCATGCAGTCAA 57.060 34.783 0.00 0.00 0.00 3.18
5747 5996 6.262049 TCAAAGCTTGAATTACTGCAGTTGTA 59.738 34.615 27.06 11.52 36.59 2.41
5814 6070 6.409185 GCTCGAAATCAAACGTCTAAATGATG 59.591 38.462 0.00 0.00 33.06 3.07
5855 6122 6.844097 TTTTAATAAGCCTACCCCAACTTG 57.156 37.500 0.00 0.00 0.00 3.16
5856 6123 5.523883 TTAATAAGCCTACCCCAACTTGT 57.476 39.130 0.00 0.00 0.00 3.16
5857 6124 4.397919 AATAAGCCTACCCCAACTTGTT 57.602 40.909 0.00 0.00 0.00 2.83
5858 6125 2.767644 AAGCCTACCCCAACTTGTTT 57.232 45.000 0.00 0.00 0.00 2.83
5859 6126 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
5870 6137 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
5871 6138 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
5872 6139 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
5873 6140 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
5874 6141 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
5875 6142 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
5876 6143 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
5877 6144 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
5878 6145 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
5879 6146 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
5880 6147 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
5881 6148 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
5882 6149 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
5883 6150 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
5884 6151 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
5885 6152 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
5886 6153 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
5887 6154 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
5888 6155 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
5889 6156 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
5890 6157 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
5891 6158 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
5892 6159 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
5893 6160 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
5894 6161 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
5895 6162 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5896 6163 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5897 6164 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5898 6165 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5936 6203 5.973565 GGACACATATATGAAAACAGCAAGC 59.026 40.000 19.63 0.00 0.00 4.01
6053 6353 4.842531 TCTGGCTTCAGGATGTTAATCA 57.157 40.909 0.00 0.00 38.96 2.57
6057 6357 3.633525 GGCTTCAGGATGTTAATCATGCA 59.366 43.478 10.47 0.00 45.37 3.96
6090 6390 6.547880 TGTGACTATCTATTCTTCCTGTCCTC 59.452 42.308 0.00 0.00 0.00 3.71
6096 6396 4.717280 TCTATTCTTCCTGTCCTCCCTTTC 59.283 45.833 0.00 0.00 0.00 2.62
6098 6398 2.991580 TCTTCCTGTCCTCCCTTTCTT 58.008 47.619 0.00 0.00 0.00 2.52
6102 6402 5.551977 TCTTCCTGTCCTCCCTTTCTTTTAT 59.448 40.000 0.00 0.00 0.00 1.40
6103 6403 5.860648 TCCTGTCCTCCCTTTCTTTTATT 57.139 39.130 0.00 0.00 0.00 1.40
6105 6405 7.337826 TCCTGTCCTCCCTTTCTTTTATTTA 57.662 36.000 0.00 0.00 0.00 1.40
6106 6406 7.173032 TCCTGTCCTCCCTTTCTTTTATTTAC 58.827 38.462 0.00 0.00 0.00 2.01
6107 6407 6.377429 CCTGTCCTCCCTTTCTTTTATTTACC 59.623 42.308 0.00 0.00 0.00 2.85
6108 6408 7.098845 TGTCCTCCCTTTCTTTTATTTACCT 57.901 36.000 0.00 0.00 0.00 3.08
6111 6411 6.214005 TCCTCCCTTTCTTTTATTTACCTCGA 59.786 38.462 0.00 0.00 0.00 4.04
6112 6412 6.315642 CCTCCCTTTCTTTTATTTACCTCGAC 59.684 42.308 0.00 0.00 0.00 4.20
6113 6413 6.175471 TCCCTTTCTTTTATTTACCTCGACC 58.825 40.000 0.00 0.00 0.00 4.79
6114 6414 5.356190 CCCTTTCTTTTATTTACCTCGACCC 59.644 44.000 0.00 0.00 0.00 4.46
6115 6415 6.178324 CCTTTCTTTTATTTACCTCGACCCT 58.822 40.000 0.00 0.00 0.00 4.34
6116 6416 7.333323 CCTTTCTTTTATTTACCTCGACCCTA 58.667 38.462 0.00 0.00 0.00 3.53
6117 6417 7.825761 CCTTTCTTTTATTTACCTCGACCCTAA 59.174 37.037 0.00 0.00 0.00 2.69
6118 6418 9.223099 CTTTCTTTTATTTACCTCGACCCTAAA 57.777 33.333 0.00 0.00 0.00 1.85
6127 6427 5.532664 ACCTCGACCCTAAATATTGTCTC 57.467 43.478 0.00 0.00 0.00 3.36
6139 6439 7.500227 CCTAAATATTGTCTCACATCACATGGT 59.500 37.037 0.00 0.00 33.60 3.55
6173 6473 2.113433 CCAGCAGGACAGCAGCATC 61.113 63.158 0.00 0.00 36.89 3.91
6630 6953 3.793888 GGTAAGGACCGGGCTGGG 61.794 72.222 18.49 5.37 44.64 4.45
6704 7029 0.251832 TTCTCCCGGCTGTTCTCTCT 60.252 55.000 0.00 0.00 0.00 3.10
6785 7110 2.757980 TTTGGCCCGGACTTGGTAGC 62.758 60.000 0.73 0.00 0.00 3.58
6792 7117 1.289109 CGGACTTGGTAGCGTTGGTG 61.289 60.000 0.00 0.00 0.00 4.17
6793 7118 0.034337 GGACTTGGTAGCGTTGGTGA 59.966 55.000 0.00 0.00 0.00 4.02
6853 7202 1.080569 GCAATGTTCCGTTGGCCAG 60.081 57.895 5.11 0.00 31.70 4.85
6880 7230 1.000171 GGTTCTTTTGAGGCAGCCTTG 60.000 52.381 17.46 4.29 31.76 3.61
6928 7282 7.789273 AGCAATCAGTCATCTAGAAAGAATG 57.211 36.000 15.71 15.71 34.73 2.67
7000 7354 9.743057 TCAAAATAAGTGTCATGGTTTTAGTTG 57.257 29.630 0.00 0.00 0.00 3.16
7004 7358 3.951037 AGTGTCATGGTTTTAGTTGCACA 59.049 39.130 0.00 0.00 0.00 4.57
7008 7377 5.163468 TGTCATGGTTTTAGTTGCACAACAT 60.163 36.000 15.40 4.00 43.47 2.71
7082 7451 3.904136 ATGTGAACACAAAGTAGCTGC 57.096 42.857 11.60 0.00 45.41 5.25
7119 7575 8.793592 ACATGGAGTTTCTACACTTAATTTTCC 58.206 33.333 0.00 0.00 0.00 3.13
7123 7579 6.665465 AGTTTCTACACTTAATTTTCCGCAC 58.335 36.000 0.00 0.00 0.00 5.34
7167 7623 1.760192 AACATCCTGAATGCTCTGGC 58.240 50.000 0.00 0.00 39.84 4.85
7168 7624 0.917533 ACATCCTGAATGCTCTGGCT 59.082 50.000 0.00 0.00 39.84 4.75
7199 7658 9.853921 GAAACAAAATCAATGCTAAAAGAACTG 57.146 29.630 0.00 0.00 0.00 3.16
7216 7675 9.611284 AAAAGAACTGTTTTTGAAAGCATTTTC 57.389 25.926 0.00 1.66 39.27 2.29
7270 7729 4.095410 TCCACAAATGCGATTTCATCAC 57.905 40.909 0.00 0.00 0.00 3.06
7271 7730 3.505293 TCCACAAATGCGATTTCATCACA 59.495 39.130 0.00 0.00 0.00 3.58
7272 7731 3.855379 CCACAAATGCGATTTCATCACAG 59.145 43.478 0.00 0.00 0.00 3.66
7275 7734 5.630264 CACAAATGCGATTTCATCACAGAAA 59.370 36.000 0.00 0.00 41.31 2.52
7281 7740 4.259135 GCGATTTCATCACAGAAATTTGCG 60.259 41.667 0.00 4.61 45.51 4.85
7283 7742 2.245795 TCATCACAGAAATTTGCGCG 57.754 45.000 0.00 0.00 0.00 6.86
7284 7743 0.636733 CATCACAGAAATTTGCGCGC 59.363 50.000 27.26 27.26 0.00 6.86
7285 7744 0.240678 ATCACAGAAATTTGCGCGCA 59.759 45.000 33.09 33.09 0.00 6.09
7286 7745 0.385849 TCACAGAAATTTGCGCGCAG 60.386 50.000 34.25 22.42 0.00 5.18
7287 7746 1.081242 ACAGAAATTTGCGCGCAGG 60.081 52.632 34.25 19.20 0.00 4.85
7288 7747 2.126346 AGAAATTTGCGCGCAGGC 60.126 55.556 34.25 20.93 0.00 4.85
7289 7748 2.430582 GAAATTTGCGCGCAGGCA 60.431 55.556 34.25 22.04 42.12 4.75
7290 7749 2.431260 AAATTTGCGCGCAGGCAG 60.431 55.556 34.25 0.00 44.94 4.85
7422 7888 3.391049 AGACCACTTTCGTAAACTCTGC 58.609 45.455 0.00 0.00 0.00 4.26
7443 7909 3.686726 GCTCATAAGTTCAGACAGTTGGG 59.313 47.826 0.00 0.00 0.00 4.12
7461 7927 3.516586 TGGGACTGTAAGATTCAGACCA 58.483 45.455 13.90 11.27 44.82 4.02
7559 8025 0.743097 GGTTCCTTCATGATGCTGGC 59.257 55.000 0.00 0.00 0.00 4.85
7584 8050 6.311445 CACGACAGCTCAATAGACTACAAAAT 59.689 38.462 0.00 0.00 0.00 1.82
7632 8098 0.165944 AAATACAGCAGCGCGTGAAC 59.834 50.000 8.43 0.00 0.00 3.18
7665 8131 3.332034 GGGCTAAAAGCACTCGAACTAA 58.668 45.455 0.78 0.00 42.59 2.24
7707 8173 6.319152 CACTAGTCACTACAGGCTACAACTAT 59.681 42.308 0.00 0.00 0.00 2.12
7915 8381 1.740025 GAAAGCTGAAGGAATGACCCG 59.260 52.381 0.00 0.00 40.05 5.28
7921 8387 3.659089 AAGGAATGACCCGACGCCG 62.659 63.158 0.00 0.00 40.05 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.534056 GCCTGCCCATCCACATGC 61.534 66.667 0.00 0.00 0.00 4.06
49 53 2.024319 GTGCTCCTGTCTGTCACGC 61.024 63.158 0.00 0.00 0.00 5.34
53 57 1.442857 CGACGTGCTCCTGTCTGTC 60.443 63.158 0.00 0.00 32.93 3.51
54 58 2.645567 CGACGTGCTCCTGTCTGT 59.354 61.111 0.00 0.00 32.93 3.41
55 59 2.807045 GCGACGTGCTCCTGTCTG 60.807 66.667 0.00 0.00 41.73 3.51
56 60 4.406173 CGCGACGTGCTCCTGTCT 62.406 66.667 0.00 0.00 43.27 3.41
112 120 4.415332 GACTTGCGAGACGGGCGA 62.415 66.667 8.31 0.00 0.00 5.54
237 293 3.264897 CCCGCACGATGCTACTGC 61.265 66.667 8.07 0.00 42.25 4.40
323 399 4.889856 CATGATCCGGCGGACGCA 62.890 66.667 33.71 30.41 44.11 5.24
332 408 1.344458 GCGAGAGTATGCATGATCCG 58.656 55.000 10.16 12.81 0.00 4.18
420 534 0.603975 GTGAGGTCAAAAGGCGAGCT 60.604 55.000 0.00 0.00 43.62 4.09
427 541 2.966309 GCCGCGGTGAGGTCAAAAG 61.966 63.158 28.70 0.00 0.00 2.27
482 596 4.486503 CTGCTGGGCTGGCTCCTC 62.487 72.222 0.00 0.00 0.00 3.71
488 602 2.516460 GATCTGCTGCTGGGCTGG 60.516 66.667 6.69 0.00 33.09 4.85
489 603 2.895865 CGATCTGCTGCTGGGCTG 60.896 66.667 6.69 0.00 0.00 4.85
490 604 4.172512 CCGATCTGCTGCTGGGCT 62.173 66.667 6.69 0.00 0.00 5.19
511 625 4.778415 TCTTGCTCGCTCGTCCGC 62.778 66.667 0.00 0.00 0.00 5.54
512 626 2.578178 CTCTTGCTCGCTCGTCCG 60.578 66.667 0.00 0.00 0.00 4.79
513 627 1.226547 CTCTCTTGCTCGCTCGTCC 60.227 63.158 0.00 0.00 0.00 4.79
518 632 0.387878 CGTTGTCTCTCTTGCTCGCT 60.388 55.000 0.00 0.00 0.00 4.93
519 633 1.347817 CCGTTGTCTCTCTTGCTCGC 61.348 60.000 0.00 0.00 0.00 5.03
525 639 2.548920 CCTTTCTGCCGTTGTCTCTCTT 60.549 50.000 0.00 0.00 0.00 2.85
528 650 0.603975 GCCTTTCTGCCGTTGTCTCT 60.604 55.000 0.00 0.00 0.00 3.10
533 655 3.737172 CCCGCCTTTCTGCCGTTG 61.737 66.667 0.00 0.00 0.00 4.10
541 663 1.228657 GCATCGTATCCCCGCCTTTC 61.229 60.000 0.00 0.00 0.00 2.62
563 690 0.591170 GCTGCTTTGTCCGCTTGTTA 59.409 50.000 0.00 0.00 0.00 2.41
601 729 2.106566 TGGCAAAACCTTCTGCTTTGA 58.893 42.857 0.00 0.00 40.22 2.69
642 770 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
643 771 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
644 772 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
645 773 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
646 774 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
647 775 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
648 776 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
649 777 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
650 778 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
651 779 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
652 780 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
653 781 5.104735 GGTTTCTCTCTCTCTCTCTCTCTCT 60.105 48.000 0.00 0.00 0.00 3.10
654 782 5.119694 GGTTTCTCTCTCTCTCTCTCTCTC 58.880 50.000 0.00 0.00 0.00 3.20
655 783 4.080299 GGGTTTCTCTCTCTCTCTCTCTCT 60.080 50.000 0.00 0.00 0.00 3.10
656 784 4.200092 GGGTTTCTCTCTCTCTCTCTCTC 58.800 52.174 0.00 0.00 0.00 3.20
657 785 3.053619 GGGGTTTCTCTCTCTCTCTCTCT 60.054 52.174 0.00 0.00 0.00 3.10
658 786 3.288092 GGGGTTTCTCTCTCTCTCTCTC 58.712 54.545 0.00 0.00 0.00 3.20
659 787 2.652348 TGGGGTTTCTCTCTCTCTCTCT 59.348 50.000 0.00 0.00 0.00 3.10
660 788 3.023832 CTGGGGTTTCTCTCTCTCTCTC 58.976 54.545 0.00 0.00 0.00 3.20
661 789 2.652348 TCTGGGGTTTCTCTCTCTCTCT 59.348 50.000 0.00 0.00 0.00 3.10
662 790 3.094484 TCTGGGGTTTCTCTCTCTCTC 57.906 52.381 0.00 0.00 0.00 3.20
663 791 3.440127 CTTCTGGGGTTTCTCTCTCTCT 58.560 50.000 0.00 0.00 0.00 3.10
664 792 2.093711 GCTTCTGGGGTTTCTCTCTCTC 60.094 54.545 0.00 0.00 0.00 3.20
742 871 3.755905 GAGCAGGGGAAGAAAGAAAGAAG 59.244 47.826 0.00 0.00 0.00 2.85
743 872 3.395941 AGAGCAGGGGAAGAAAGAAAGAA 59.604 43.478 0.00 0.00 0.00 2.52
744 873 2.982488 AGAGCAGGGGAAGAAAGAAAGA 59.018 45.455 0.00 0.00 0.00 2.52
745 874 3.342719 GAGAGCAGGGGAAGAAAGAAAG 58.657 50.000 0.00 0.00 0.00 2.62
746 875 2.040412 GGAGAGCAGGGGAAGAAAGAAA 59.960 50.000 0.00 0.00 0.00 2.52
747 876 1.630878 GGAGAGCAGGGGAAGAAAGAA 59.369 52.381 0.00 0.00 0.00 2.52
748 877 1.280457 GGAGAGCAGGGGAAGAAAGA 58.720 55.000 0.00 0.00 0.00 2.52
749 878 0.254462 GGGAGAGCAGGGGAAGAAAG 59.746 60.000 0.00 0.00 0.00 2.62
750 879 0.475632 TGGGAGAGCAGGGGAAGAAA 60.476 55.000 0.00 0.00 0.00 2.52
896 1028 5.989777 CGTTAAAATATAGGACCAGACCAGG 59.010 44.000 0.00 0.00 0.00 4.45
1029 1161 1.134098 AGGAGAAGCGAGAGAGAGAGG 60.134 57.143 0.00 0.00 0.00 3.69
1036 1172 1.671901 GGTGGGAGGAGAAGCGAGAG 61.672 65.000 0.00 0.00 0.00 3.20
1054 1190 0.749454 CCTTTTCCCTCGGCATCTGG 60.749 60.000 0.00 0.00 0.00 3.86
1055 1191 0.749454 CCCTTTTCCCTCGGCATCTG 60.749 60.000 0.00 0.00 0.00 2.90
1056 1192 0.914417 TCCCTTTTCCCTCGGCATCT 60.914 55.000 0.00 0.00 0.00 2.90
1057 1193 0.034477 TTCCCTTTTCCCTCGGCATC 60.034 55.000 0.00 0.00 0.00 3.91
1075 1213 2.116869 AGAAACCCCAAAAGGCCATT 57.883 45.000 5.01 0.00 0.00 3.16
1131 1275 1.207329 AGTAGGGGAACTCGTTCATGC 59.793 52.381 11.47 1.72 41.20 4.06
1140 1284 2.421399 GCGGCGTAGTAGGGGAACT 61.421 63.158 9.37 0.00 0.00 3.01
1225 1369 1.329256 ACAGCACGTGGAGTAAGAGT 58.671 50.000 18.88 0.00 0.00 3.24
1258 1405 1.069227 CGCAAAGAAGAAGAAACCCCG 60.069 52.381 0.00 0.00 0.00 5.73
1325 1472 0.996583 TTAGCCACGGGAAAGGGATT 59.003 50.000 0.00 0.00 0.00 3.01
1369 1516 1.663739 CGTCCTCCACCTTCACGAA 59.336 57.895 0.00 0.00 32.08 3.85
1533 1680 2.126071 GCGTACGCTTGGAGCTCA 60.126 61.111 31.95 0.00 39.60 4.26
1570 1717 4.615912 CGACATGAGCGGAATTTCCTTTTT 60.616 41.667 13.45 0.00 33.30 1.94
1571 1718 3.119849 CGACATGAGCGGAATTTCCTTTT 60.120 43.478 13.45 0.00 33.30 2.27
1572 1719 2.420022 CGACATGAGCGGAATTTCCTTT 59.580 45.455 13.45 1.37 33.30 3.11
1573 1720 2.009774 CGACATGAGCGGAATTTCCTT 58.990 47.619 13.45 1.73 33.30 3.36
1574 1721 1.066143 ACGACATGAGCGGAATTTCCT 60.066 47.619 13.45 0.00 33.30 3.36
1575 1722 1.062587 CACGACATGAGCGGAATTTCC 59.937 52.381 14.96 5.28 0.00 3.13
1576 1723 1.732259 ACACGACATGAGCGGAATTTC 59.268 47.619 14.96 0.00 0.00 2.17
1577 1724 1.732259 GACACGACATGAGCGGAATTT 59.268 47.619 14.96 0.00 0.00 1.82
1578 1725 1.359848 GACACGACATGAGCGGAATT 58.640 50.000 14.96 0.00 0.00 2.17
1579 1726 0.460284 GGACACGACATGAGCGGAAT 60.460 55.000 14.96 2.72 0.00 3.01
1580 1727 1.080093 GGACACGACATGAGCGGAA 60.080 57.895 14.96 0.00 0.00 4.30
1584 1731 1.071605 GAAGTGGACACGACATGAGC 58.928 55.000 0.00 0.00 36.20 4.26
1585 1732 2.732412 AGAAGTGGACACGACATGAG 57.268 50.000 0.00 0.00 36.20 2.90
1591 1738 3.744238 TGATCAAAGAAGTGGACACGA 57.256 42.857 0.00 0.00 36.20 4.35
1596 1743 3.129813 GCATGCATGATCAAAGAAGTGGA 59.870 43.478 30.64 0.00 0.00 4.02
1597 1744 3.444916 GCATGCATGATCAAAGAAGTGG 58.555 45.455 30.64 0.00 0.00 4.00
1599 1746 2.098607 CGGCATGCATGATCAAAGAAGT 59.901 45.455 30.64 0.00 0.00 3.01
1626 1779 2.480555 GAACAACCTGCGCCGATG 59.519 61.111 4.18 2.24 0.00 3.84
1632 1785 0.453282 CATTGCTCGAACAACCTGCG 60.453 55.000 2.84 0.00 31.03 5.18
1739 1892 2.227968 CTACCTTCAACTGCGTGCGC 62.228 60.000 9.85 9.85 42.35 6.09
1781 1934 1.754803 AGAATGTTGGAGCGGTCGATA 59.245 47.619 8.77 0.00 0.00 2.92
1798 1951 3.056536 CACCAGTGAAGAAGGATCGAGAA 60.057 47.826 0.00 0.00 0.00 2.87
1810 1963 2.289002 GTCAAGAAGTGCACCAGTGAAG 59.711 50.000 14.63 0.00 0.00 3.02
1811 1964 2.288666 GTCAAGAAGTGCACCAGTGAA 58.711 47.619 14.63 0.00 0.00 3.18
1812 1965 1.209261 TGTCAAGAAGTGCACCAGTGA 59.791 47.619 14.63 9.53 0.00 3.41
1813 1966 1.331756 GTGTCAAGAAGTGCACCAGTG 59.668 52.381 14.63 7.15 31.78 3.66
1814 1967 1.668419 GTGTCAAGAAGTGCACCAGT 58.332 50.000 14.63 0.00 31.78 4.00
1815 1968 0.583438 CGTGTCAAGAAGTGCACCAG 59.417 55.000 14.63 0.00 33.36 4.00
1818 1971 1.160329 AGCCGTGTCAAGAAGTGCAC 61.160 55.000 9.40 9.40 33.50 4.57
1819 1972 0.880278 GAGCCGTGTCAAGAAGTGCA 60.880 55.000 0.00 0.00 0.00 4.57
1820 1973 1.862806 GAGCCGTGTCAAGAAGTGC 59.137 57.895 0.00 0.00 0.00 4.40
1821 1974 1.284982 CCGAGCCGTGTCAAGAAGTG 61.285 60.000 0.00 0.00 0.00 3.16
1822 1975 1.006102 CCGAGCCGTGTCAAGAAGT 60.006 57.895 0.00 0.00 0.00 3.01
1823 1976 2.383527 GCCGAGCCGTGTCAAGAAG 61.384 63.158 0.00 0.00 0.00 2.85
1824 1977 2.357034 GCCGAGCCGTGTCAAGAA 60.357 61.111 0.00 0.00 0.00 2.52
1825 1978 3.303135 AGCCGAGCCGTGTCAAGA 61.303 61.111 0.00 0.00 0.00 3.02
1826 1979 2.842394 ATCAGCCGAGCCGTGTCAAG 62.842 60.000 0.00 0.00 0.00 3.02
1827 1980 2.449031 AATCAGCCGAGCCGTGTCAA 62.449 55.000 0.00 0.00 0.00 3.18
1828 1981 2.835701 GAATCAGCCGAGCCGTGTCA 62.836 60.000 0.00 0.00 0.00 3.58
1829 1982 2.125512 AATCAGCCGAGCCGTGTC 60.126 61.111 0.00 0.00 0.00 3.67
1830 1983 2.125512 GAATCAGCCGAGCCGTGT 60.126 61.111 0.00 0.00 0.00 4.49
1831 1984 2.892425 GGAATCAGCCGAGCCGTG 60.892 66.667 0.00 0.00 0.00 4.94
1832 1985 3.077556 AGGAATCAGCCGAGCCGT 61.078 61.111 0.00 0.00 0.00 5.68
1833 1986 2.279784 GAGGAATCAGCCGAGCCG 60.280 66.667 0.00 0.00 0.00 5.52
1834 1987 1.068921 GAGAGGAATCAGCCGAGCC 59.931 63.158 0.00 0.00 0.00 4.70
1835 1988 0.249405 CAGAGAGGAATCAGCCGAGC 60.249 60.000 0.00 0.00 0.00 5.03
1836 1989 1.110442 ACAGAGAGGAATCAGCCGAG 58.890 55.000 0.00 0.00 0.00 4.63
1837 1990 0.820226 CACAGAGAGGAATCAGCCGA 59.180 55.000 0.00 0.00 0.00 5.54
1949 2102 4.764771 ATGCGCCATTGCCACCCT 62.765 61.111 4.18 0.00 0.00 4.34
1999 2152 1.515088 CGACTCGTCAAGCATCGCT 60.515 57.895 0.00 0.00 42.56 4.93
2036 2189 3.112709 GTTCTGGACGCGCAGGTC 61.113 66.667 5.73 7.64 36.18 3.85
2157 2310 2.034879 ACTGAACCAATGCGCTCCG 61.035 57.895 9.73 0.00 0.00 4.63
2241 2394 2.967076 CCGTGATCGCCATTCCCG 60.967 66.667 0.00 0.00 35.54 5.14
2434 2587 1.152881 CTTCACCCCTATGGCTGGC 60.153 63.158 0.00 0.00 37.83 4.85
2550 2703 1.213013 GGCACAGTGAGACGACGAT 59.787 57.895 4.15 0.00 0.00 3.73
2551 2704 2.643272 GGCACAGTGAGACGACGA 59.357 61.111 4.15 0.00 0.00 4.20
2552 2705 2.430921 GGGCACAGTGAGACGACG 60.431 66.667 4.15 0.00 0.00 5.12
2553 2706 2.048127 GGGGCACAGTGAGACGAC 60.048 66.667 4.15 0.00 0.00 4.34
2554 2707 3.311110 GGGGGCACAGTGAGACGA 61.311 66.667 4.15 0.00 0.00 4.20
2555 2708 3.314331 AGGGGGCACAGTGAGACG 61.314 66.667 4.15 0.00 0.00 4.18
2556 2709 2.348998 CAGGGGGCACAGTGAGAC 59.651 66.667 4.15 0.00 0.00 3.36
2557 2710 3.640407 GCAGGGGGCACAGTGAGA 61.640 66.667 4.15 0.00 43.97 3.27
2566 2719 4.035102 AACGAGAAGGCAGGGGGC 62.035 66.667 0.00 0.00 43.74 5.80
2567 2720 2.045926 CAACGAGAAGGCAGGGGG 60.046 66.667 0.00 0.00 0.00 5.40
2568 2721 1.899437 TAGCAACGAGAAGGCAGGGG 61.899 60.000 0.00 0.00 0.00 4.79
2573 2726 0.533032 AGGAGTAGCAACGAGAAGGC 59.467 55.000 0.00 0.00 0.00 4.35
2588 2741 7.413438 GCAATGTAAGTTCAGACATACAAGGAG 60.413 40.741 0.00 0.00 41.58 3.69
2592 2745 6.149308 CAGGCAATGTAAGTTCAGACATACAA 59.851 38.462 0.00 0.00 41.58 2.41
2781 2934 8.148351 TGCTAGTACAATTAAGTGCCTATAAGG 58.852 37.037 2.17 0.00 38.80 2.69
2789 2942 8.543774 CACTTAGATGCTAGTACAATTAAGTGC 58.456 37.037 15.61 0.00 40.11 4.40
2802 2955 7.418408 TGATAGACGAAACACTTAGATGCTAG 58.582 38.462 0.00 0.00 0.00 3.42
2803 2956 7.329588 TGATAGACGAAACACTTAGATGCTA 57.670 36.000 0.00 0.00 0.00 3.49
2805 2958 7.340699 CAATGATAGACGAAACACTTAGATGC 58.659 38.462 0.00 0.00 0.00 3.91
2807 2960 7.041721 TGCAATGATAGACGAAACACTTAGAT 58.958 34.615 0.00 0.00 0.00 1.98
2808 2961 6.394809 TGCAATGATAGACGAAACACTTAGA 58.605 36.000 0.00 0.00 0.00 2.10
2876 3029 3.777522 CTGAGAAAGGTCACCTCCCTAAT 59.222 47.826 0.00 0.00 30.89 1.73
2888 3041 5.595952 ACTTTTTGCAGAATCTGAGAAAGGT 59.404 36.000 23.77 19.85 34.13 3.50
2899 3052 3.070015 CCTCACCCAACTTTTTGCAGAAT 59.930 43.478 0.00 0.00 0.00 2.40
2909 3062 1.133482 CCAGAAACCCTCACCCAACTT 60.133 52.381 0.00 0.00 0.00 2.66
2926 3079 2.359900 GAAACATCCACTACAGCCCAG 58.640 52.381 0.00 0.00 0.00 4.45
2955 3108 0.610232 GCCTTGCTCCATCACCAACT 60.610 55.000 0.00 0.00 0.00 3.16
2961 3114 4.749323 CAAGGCCTTGCTCCATCA 57.251 55.556 31.70 0.00 33.45 3.07
3092 3261 7.201679 GCTAACATTGCTGTCTATTGTCAATCT 60.202 37.037 0.07 0.00 33.36 2.40
3094 3263 6.375174 TGCTAACATTGCTGTCTATTGTCAAT 59.625 34.615 3.06 3.06 33.36 2.57
3098 3267 4.093408 CGTGCTAACATTGCTGTCTATTGT 59.907 41.667 0.00 0.00 33.36 2.71
3103 3272 0.798776 GCGTGCTAACATTGCTGTCT 59.201 50.000 0.00 0.00 33.36 3.41
3124 3294 1.040646 ACAGAGGCAGACGAGTTTCA 58.959 50.000 0.00 0.00 0.00 2.69
3125 3295 3.440228 GATACAGAGGCAGACGAGTTTC 58.560 50.000 0.00 0.00 0.00 2.78
3159 3329 8.656806 TGGTAGCCAAATAAGTAACATAGCTAT 58.343 33.333 0.00 0.00 33.34 2.97
3160 3330 7.929785 GTGGTAGCCAAATAAGTAACATAGCTA 59.070 37.037 0.00 0.00 34.18 3.32
3163 3333 7.051623 TGGTGGTAGCCAAATAAGTAACATAG 58.948 38.462 0.00 0.00 34.18 2.23
3165 3335 5.822204 TGGTGGTAGCCAAATAAGTAACAT 58.178 37.500 0.00 0.00 34.18 2.71
3176 3346 2.630580 GGTTGATTTTGGTGGTAGCCAA 59.369 45.455 0.00 0.00 45.83 4.52
3177 3347 2.243810 GGTTGATTTTGGTGGTAGCCA 58.756 47.619 0.00 0.00 36.62 4.75
3189 3359 2.812011 GTGGAACTAGCACGGTTGATTT 59.188 45.455 0.00 0.00 0.00 2.17
3220 3390 6.073494 GCTGATGATCATCATATGCATAGAGC 60.073 42.308 32.96 24.61 45.74 4.09
3221 3391 7.170658 CAGCTGATGATCATCATATGCATAGAG 59.829 40.741 32.87 22.00 45.74 2.43
3222 3392 6.986817 CAGCTGATGATCATCATATGCATAGA 59.013 38.462 32.87 14.64 45.74 1.98
3223 3393 6.203723 CCAGCTGATGATCATCATATGCATAG 59.796 42.308 32.87 25.20 45.74 2.23
3224 3394 6.055588 CCAGCTGATGATCATCATATGCATA 58.944 40.000 32.87 9.27 45.74 3.14
3225 3395 4.884164 CCAGCTGATGATCATCATATGCAT 59.116 41.667 32.87 22.03 45.74 3.96
3226 3396 4.261801 CCAGCTGATGATCATCATATGCA 58.738 43.478 32.87 17.33 45.74 3.96
3227 3397 3.065510 GCCAGCTGATGATCATCATATGC 59.934 47.826 32.96 30.32 45.74 3.14
3228 3398 4.518249 AGCCAGCTGATGATCATCATATG 58.482 43.478 32.96 29.87 45.74 1.78
3229 3399 4.846168 AGCCAGCTGATGATCATCATAT 57.154 40.909 32.96 22.99 45.74 1.78
3230 3400 4.202430 ACAAGCCAGCTGATGATCATCATA 60.202 41.667 32.96 15.69 45.74 2.15
3231 3401 3.149981 CAAGCCAGCTGATGATCATCAT 58.850 45.455 32.96 20.00 45.74 2.45
3232 3402 2.092592 ACAAGCCAGCTGATGATCATCA 60.093 45.455 31.30 31.30 44.83 3.07
3233 3403 2.573369 ACAAGCCAGCTGATGATCATC 58.427 47.619 25.91 25.91 38.29 2.92
3234 3404 2.688446 CAACAAGCCAGCTGATGATCAT 59.312 45.455 17.39 8.25 0.00 2.45
3235 3405 2.089201 CAACAAGCCAGCTGATGATCA 58.911 47.619 17.39 0.00 0.00 2.92
3236 3406 1.202268 GCAACAAGCCAGCTGATGATC 60.202 52.381 17.39 0.00 37.23 2.92
3237 3407 0.815734 GCAACAAGCCAGCTGATGAT 59.184 50.000 17.39 3.16 37.23 2.45
3238 3408 1.579964 CGCAACAAGCCAGCTGATGA 61.580 55.000 17.39 0.00 41.38 2.92
3239 3409 1.154093 CGCAACAAGCCAGCTGATG 60.154 57.895 17.39 13.53 41.38 3.07
3240 3410 0.890542 TTCGCAACAAGCCAGCTGAT 60.891 50.000 17.39 0.00 41.38 2.90
3241 3411 1.100463 TTTCGCAACAAGCCAGCTGA 61.100 50.000 17.39 0.00 41.38 4.26
3242 3412 0.038892 ATTTCGCAACAAGCCAGCTG 60.039 50.000 6.78 6.78 41.38 4.24
3243 3413 0.038892 CATTTCGCAACAAGCCAGCT 60.039 50.000 0.00 0.00 41.38 4.24
3244 3414 1.620413 GCATTTCGCAACAAGCCAGC 61.620 55.000 0.00 0.00 41.38 4.85
3245 3415 2.437850 GCATTTCGCAACAAGCCAG 58.562 52.632 0.00 0.00 41.38 4.85
3246 3416 4.651585 GCATTTCGCAACAAGCCA 57.348 50.000 0.00 0.00 41.38 4.75
3275 3445 3.942829 TCTCATGTGGTCATTGAGAACC 58.057 45.455 11.55 0.00 36.41 3.62
3281 3451 5.892160 AGAACATTCTCATGTGGTCATTG 57.108 39.130 2.34 0.00 43.34 2.82
3282 3452 6.906157 AAAGAACATTCTCATGTGGTCATT 57.094 33.333 2.34 0.00 43.34 2.57
3355 3527 7.839200 ACCCTTTTGGCTTTGTGAATACTATAT 59.161 33.333 0.00 0.00 37.83 0.86
3409 3581 1.228245 GAGGGCTTGCAACCACAGA 60.228 57.895 16.55 0.00 0.00 3.41
3426 3598 1.406539 GATTACCTAACTCGCGGTGGA 59.593 52.381 6.13 0.00 34.76 4.02
3434 3606 5.479306 TGCTGACAAGTGATTACCTAACTC 58.521 41.667 0.00 0.00 0.00 3.01
3447 3619 1.265236 CCCTCTCTCTGCTGACAAGT 58.735 55.000 0.00 0.00 0.00 3.16
3520 3692 5.535753 AACTAAGAAAAGGCACATGCTTT 57.464 34.783 3.48 0.00 42.37 3.51
3549 3721 4.389664 TTTGCTTCAAGAATTCGACTCG 57.610 40.909 0.00 0.00 0.00 4.18
3568 3740 8.644374 TTGTGGGCAGTTAGTATAGAATTTTT 57.356 30.769 0.00 0.00 0.00 1.94
3574 3746 7.849322 TGATATTGTGGGCAGTTAGTATAGA 57.151 36.000 0.00 0.00 0.00 1.98
3624 3796 8.598041 ACAATAGACTTAGTGGTCAAGATCTTT 58.402 33.333 4.86 0.00 38.57 2.52
3665 3837 9.549078 CTTCCTCTTTCAAAGACTAAAAGTACT 57.451 33.333 0.00 0.00 33.12 2.73
3784 3958 1.102154 CCTTTGTGACAAGCCACACA 58.898 50.000 0.00 0.00 45.62 3.72
3792 3966 2.829206 CGCACGGCCTTTGTGACAA 61.829 57.895 12.86 0.00 39.73 3.18
3794 3968 3.276846 ACGCACGGCCTTTGTGAC 61.277 61.111 18.76 7.44 39.73 3.67
3810 3984 1.002468 ACAGCTGATCGTTTTGCACAC 60.002 47.619 23.35 0.00 0.00 3.82
3815 3997 7.463544 TGATATACAAACAGCTGATCGTTTTG 58.536 34.615 23.35 20.98 33.14 2.44
3817 3999 6.818644 ACTGATATACAAACAGCTGATCGTTT 59.181 34.615 23.35 7.52 35.76 3.60
3820 4002 5.979517 TGACTGATATACAAACAGCTGATCG 59.020 40.000 23.35 10.06 35.38 3.69
3832 4014 6.318648 GGCCTTTTTCACATGACTGATATACA 59.681 38.462 0.00 0.00 0.00 2.29
3848 4030 4.696899 ACTAAATAGCACGGCCTTTTTC 57.303 40.909 0.00 0.00 0.00 2.29
3850 4032 3.192633 CCAACTAAATAGCACGGCCTTTT 59.807 43.478 0.00 0.00 0.00 2.27
3851 4033 2.752903 CCAACTAAATAGCACGGCCTTT 59.247 45.455 0.00 0.00 0.00 3.11
3852 4034 2.290705 ACCAACTAAATAGCACGGCCTT 60.291 45.455 0.00 0.00 0.00 4.35
3853 4035 1.280998 ACCAACTAAATAGCACGGCCT 59.719 47.619 0.00 0.00 0.00 5.19
3854 4036 1.746470 ACCAACTAAATAGCACGGCC 58.254 50.000 0.00 0.00 0.00 6.13
3855 4037 3.427098 GGAAACCAACTAAATAGCACGGC 60.427 47.826 0.00 0.00 0.00 5.68
3856 4038 4.007659 AGGAAACCAACTAAATAGCACGG 58.992 43.478 0.00 0.00 0.00 4.94
3857 4039 4.454504 ACAGGAAACCAACTAAATAGCACG 59.545 41.667 0.00 0.00 0.00 5.34
3858 4040 5.959618 ACAGGAAACCAACTAAATAGCAC 57.040 39.130 0.00 0.00 0.00 4.40
3859 4041 6.969993 AAACAGGAAACCAACTAAATAGCA 57.030 33.333 0.00 0.00 0.00 3.49
3860 4042 8.957466 AGATAAACAGGAAACCAACTAAATAGC 58.043 33.333 0.00 0.00 0.00 2.97
3863 4045 9.588096 AGAAGATAAACAGGAAACCAACTAAAT 57.412 29.630 0.00 0.00 0.00 1.40
3864 4046 8.990163 AGAAGATAAACAGGAAACCAACTAAA 57.010 30.769 0.00 0.00 0.00 1.85
3865 4047 8.437575 AGAGAAGATAAACAGGAAACCAACTAA 58.562 33.333 0.00 0.00 0.00 2.24
3866 4048 7.974504 AGAGAAGATAAACAGGAAACCAACTA 58.025 34.615 0.00 0.00 0.00 2.24
3867 4049 6.842676 AGAGAAGATAAACAGGAAACCAACT 58.157 36.000 0.00 0.00 0.00 3.16
3868 4050 7.228706 TGAAGAGAAGATAAACAGGAAACCAAC 59.771 37.037 0.00 0.00 0.00 3.77
3869 4051 7.287061 TGAAGAGAAGATAAACAGGAAACCAA 58.713 34.615 0.00 0.00 0.00 3.67
3889 4071 5.757808 TCAACAAACGATGAGTTGATGAAGA 59.242 36.000 9.05 0.00 44.60 2.87
3897 4079 6.149308 TGCATCTAATCAACAAACGATGAGTT 59.851 34.615 0.00 0.00 46.76 3.01
3978 4160 8.431910 TTTCTTTAGAGGGAGTAACATGTACT 57.568 34.615 0.00 3.13 0.00 2.73
3988 4170 9.495382 ACACTCTTATATTTCTTTAGAGGGAGT 57.505 33.333 6.67 0.00 38.38 3.85
4038 4220 9.379791 CCTCCGTAAAGAAATATAAGAGTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
4039 4221 7.985752 CCCTCCGTAAAGAAATATAAGAGTGTT 59.014 37.037 0.00 0.00 0.00 3.32
4040 4222 7.343833 TCCCTCCGTAAAGAAATATAAGAGTGT 59.656 37.037 0.00 0.00 0.00 3.55
4041 4223 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
4042 4224 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
4043 4225 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4044 4226 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4045 4227 8.636213 TGTACTCCCTCCGTAAAGAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
4046 4228 8.537728 TGTACTCCCTCCGTAAAGAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
4047 4229 8.537728 TTGTACTCCCTCCGTAAAGAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
4048 4230 7.427989 TTGTACTCCCTCCGTAAAGAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
4049 4231 6.855763 TTGTACTCCCTCCGTAAAGAAATA 57.144 37.500 0.00 0.00 0.00 1.40
4050 4232 5.750352 TTGTACTCCCTCCGTAAAGAAAT 57.250 39.130 0.00 0.00 0.00 2.17
4051 4233 5.012354 ACATTGTACTCCCTCCGTAAAGAAA 59.988 40.000 0.00 0.00 0.00 2.52
4052 4234 4.529377 ACATTGTACTCCCTCCGTAAAGAA 59.471 41.667 0.00 0.00 0.00 2.52
4053 4235 4.091549 ACATTGTACTCCCTCCGTAAAGA 58.908 43.478 0.00 0.00 0.00 2.52
4054 4236 4.467198 ACATTGTACTCCCTCCGTAAAG 57.533 45.455 0.00 0.00 0.00 1.85
4055 4237 4.403432 CCTACATTGTACTCCCTCCGTAAA 59.597 45.833 0.00 0.00 0.00 2.01
4056 4238 3.956199 CCTACATTGTACTCCCTCCGTAA 59.044 47.826 0.00 0.00 0.00 3.18
4057 4239 3.202818 TCCTACATTGTACTCCCTCCGTA 59.797 47.826 0.00 0.00 0.00 4.02
4058 4240 2.024655 TCCTACATTGTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
4059 4241 2.623889 CTCCTACATTGTACTCCCTCCG 59.376 54.545 0.00 0.00 0.00 4.63
4060 4242 3.644335 ACTCCTACATTGTACTCCCTCC 58.356 50.000 0.00 0.00 0.00 4.30
4061 4243 4.710375 TGAACTCCTACATTGTACTCCCTC 59.290 45.833 0.00 0.00 0.00 4.30
4062 4244 4.684724 TGAACTCCTACATTGTACTCCCT 58.315 43.478 0.00 0.00 0.00 4.20
4063 4245 5.615925 ATGAACTCCTACATTGTACTCCC 57.384 43.478 0.00 0.00 0.00 4.30
4064 4246 9.915629 CTATTATGAACTCCTACATTGTACTCC 57.084 37.037 0.00 0.00 0.00 3.85
4065 4247 9.915629 CCTATTATGAACTCCTACATTGTACTC 57.084 37.037 0.00 0.00 0.00 2.59
4066 4248 9.435570 ACCTATTATGAACTCCTACATTGTACT 57.564 33.333 0.00 0.00 0.00 2.73
4150 4332 8.776470 CATTTTGCTGAAATATTTTGACCAAGT 58.224 29.630 1.43 0.00 35.79 3.16
4203 4385 4.316205 TGTCAGGTACACAGTGTAAGTG 57.684 45.455 15.24 14.49 44.80 3.16
4309 4535 0.609131 ACCCATGTAACCTGCAGTGC 60.609 55.000 13.81 8.58 0.00 4.40
4528 4754 6.432403 TTGCCATTTTAATTCCAAGGAAGT 57.568 33.333 7.69 7.35 37.56 3.01
4677 4909 3.310860 AATGCTCCCCGTGACGTCC 62.311 63.158 14.12 3.43 0.00 4.79
4720 4952 2.567169 CAGGTTCATCCACACTCCTACA 59.433 50.000 0.00 0.00 39.02 2.74
4962 5194 2.637872 AGGAGCAACAACTAACTAGGCA 59.362 45.455 0.00 0.00 0.00 4.75
5064 5296 1.804748 GTTCCCAAGACTAAAGCACCG 59.195 52.381 0.00 0.00 0.00 4.94
5223 5460 0.718904 TACGTCATTGCGATGCACAC 59.281 50.000 9.26 1.77 38.71 3.82
5239 5476 2.685387 GATCGTGCCCAGCCTCTACG 62.685 65.000 0.00 0.00 36.20 3.51
5248 5485 0.035439 GAAAAGGAGGATCGTGCCCA 60.035 55.000 3.06 0.00 34.37 5.36
5316 5553 8.337118 TCTTCCTCAAGAATATAACTCCCAAT 57.663 34.615 0.00 0.00 35.57 3.16
5348 5585 2.949447 ACAAGGCTGGTGAAAACATCT 58.051 42.857 0.00 0.00 0.00 2.90
5509 5749 9.813080 CTTTTCAAGTTCTATGCTAGTTAACAC 57.187 33.333 8.61 0.00 0.00 3.32
5511 5751 9.000486 ACCTTTTCAAGTTCTATGCTAGTTAAC 58.000 33.333 0.00 0.00 0.00 2.01
5556 5796 5.188434 TGCTGTTTCATATTTCTCCTCCAG 58.812 41.667 0.00 0.00 0.00 3.86
5652 5892 7.001674 ACAACACACATCCTAATTTACTTCCA 58.998 34.615 0.00 0.00 0.00 3.53
5679 5919 9.715121 AGTACATCTAATTTGGTTTAACTTCGA 57.285 29.630 0.00 0.00 0.00 3.71
5710 5959 3.120095 TCAAGCTTTGACTGCATGAATCG 60.120 43.478 0.00 0.00 35.62 3.34
5716 5965 5.706916 CAGTAATTCAAGCTTTGACTGCAT 58.293 37.500 0.00 0.00 39.87 3.96
5725 5974 5.530915 TGTACAACTGCAGTAATTCAAGCTT 59.469 36.000 22.01 0.00 0.00 3.74
5836 6103 4.397919 AACAAGTTGGGGTAGGCTTATT 57.602 40.909 7.96 0.00 0.00 1.40
5838 6105 3.492337 CAAACAAGTTGGGGTAGGCTTA 58.508 45.455 7.96 0.00 33.18 3.09
5839 6106 2.316108 CAAACAAGTTGGGGTAGGCTT 58.684 47.619 7.96 0.00 33.18 4.35
5849 6116 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
5850 6117 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
5851 6118 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
5852 6119 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
5853 6120 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
5854 6121 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
5855 6122 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
5856 6123 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
5857 6124 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
5858 6125 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
5859 6126 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
5860 6127 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
5861 6128 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
5862 6129 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
5863 6130 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
5864 6131 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
5865 6132 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
5866 6133 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
5867 6134 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
5868 6135 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
5869 6136 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
5870 6137 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
5871 6138 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
5872 6139 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5873 6140 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5874 6141 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5875 6142 5.727791 GCAACAACAACAACAACAACAACAA 60.728 36.000 0.00 0.00 0.00 2.83
5876 6143 4.260375 GCAACAACAACAACAACAACAACA 60.260 37.500 0.00 0.00 0.00 3.33
5877 6144 4.207599 GCAACAACAACAACAACAACAAC 58.792 39.130 0.00 0.00 0.00 3.32
5878 6145 3.871006 TGCAACAACAACAACAACAACAA 59.129 34.783 0.00 0.00 0.00 2.83
5879 6146 3.457234 TGCAACAACAACAACAACAACA 58.543 36.364 0.00 0.00 0.00 3.33
5880 6147 4.393074 CATGCAACAACAACAACAACAAC 58.607 39.130 0.00 0.00 0.00 3.32
5881 6148 3.120408 GCATGCAACAACAACAACAACAA 60.120 39.130 14.21 0.00 0.00 2.83
5882 6149 2.414481 GCATGCAACAACAACAACAACA 59.586 40.909 14.21 0.00 0.00 3.33
5883 6150 2.414481 TGCATGCAACAACAACAACAAC 59.586 40.909 20.30 0.00 0.00 3.32
5884 6151 2.671888 CTGCATGCAACAACAACAACAA 59.328 40.909 22.88 0.00 0.00 2.83
5885 6152 2.269172 CTGCATGCAACAACAACAACA 58.731 42.857 22.88 0.00 0.00 3.33
5886 6153 2.270047 ACTGCATGCAACAACAACAAC 58.730 42.857 22.88 0.00 0.00 3.32
5887 6154 2.094338 TGACTGCATGCAACAACAACAA 60.094 40.909 22.88 0.00 0.00 2.83
5888 6155 1.475682 TGACTGCATGCAACAACAACA 59.524 42.857 22.88 10.68 0.00 3.33
5889 6156 2.206815 TGACTGCATGCAACAACAAC 57.793 45.000 22.88 8.35 0.00 3.32
5890 6157 2.166050 ACTTGACTGCATGCAACAACAA 59.834 40.909 25.69 22.45 0.00 2.83
5891 6158 1.750206 ACTTGACTGCATGCAACAACA 59.250 42.857 25.69 18.38 0.00 3.33
5892 6159 2.121786 CACTTGACTGCATGCAACAAC 58.878 47.619 25.69 16.56 0.00 3.32
5893 6160 1.067364 CCACTTGACTGCATGCAACAA 59.933 47.619 26.80 26.80 0.00 2.83
5894 6161 0.669619 CCACTTGACTGCATGCAACA 59.330 50.000 22.88 20.56 0.00 3.33
5895 6162 0.953727 TCCACTTGACTGCATGCAAC 59.046 50.000 22.88 18.24 0.00 4.17
5896 6163 0.953727 GTCCACTTGACTGCATGCAA 59.046 50.000 22.88 3.76 41.03 4.08
5897 6164 0.179023 TGTCCACTTGACTGCATGCA 60.179 50.000 21.29 21.29 44.75 3.96
5898 6165 0.239347 GTGTCCACTTGACTGCATGC 59.761 55.000 11.82 11.82 44.75 4.06
6009 6309 4.891627 ACAATCAAACAACACGATGACA 57.108 36.364 0.00 0.00 0.00 3.58
6010 6310 5.971202 AGAAACAATCAAACAACACGATGAC 59.029 36.000 0.00 0.00 0.00 3.06
6053 6353 8.687292 AATAGATAGTCACACAAATCATGCAT 57.313 30.769 0.00 0.00 0.00 3.96
6057 6357 9.553064 GGAAGAATAGATAGTCACACAAATCAT 57.447 33.333 0.00 0.00 0.00 2.45
6071 6371 5.688220 AGGGAGGACAGGAAGAATAGATA 57.312 43.478 0.00 0.00 0.00 1.98
6090 6390 5.356190 GGGTCGAGGTAAATAAAAGAAAGGG 59.644 44.000 0.00 0.00 0.00 3.95
6102 6402 7.124599 TGAGACAATATTTAGGGTCGAGGTAAA 59.875 37.037 0.00 0.00 35.49 2.01
6103 6403 6.608405 TGAGACAATATTTAGGGTCGAGGTAA 59.392 38.462 0.00 0.00 35.49 2.85
6105 6405 4.960469 TGAGACAATATTTAGGGTCGAGGT 59.040 41.667 0.00 0.00 35.49 3.85
6106 6406 5.163447 TGTGAGACAATATTTAGGGTCGAGG 60.163 44.000 0.00 0.00 35.49 4.63
6107 6407 5.902681 TGTGAGACAATATTTAGGGTCGAG 58.097 41.667 0.00 0.00 35.49 4.04
6108 6408 5.925506 TGTGAGACAATATTTAGGGTCGA 57.074 39.130 0.00 0.00 35.49 4.20
6111 6411 6.957631 TGTGATGTGAGACAATATTTAGGGT 58.042 36.000 0.00 0.00 0.00 4.34
6112 6412 7.040892 CCATGTGATGTGAGACAATATTTAGGG 60.041 40.741 0.00 0.00 0.00 3.53
6113 6413 7.500227 ACCATGTGATGTGAGACAATATTTAGG 59.500 37.037 0.00 0.00 0.00 2.69
6114 6414 8.442632 ACCATGTGATGTGAGACAATATTTAG 57.557 34.615 0.00 0.00 0.00 1.85
6115 6415 9.325198 GTACCATGTGATGTGAGACAATATTTA 57.675 33.333 0.00 0.00 0.00 1.40
6116 6416 7.828717 TGTACCATGTGATGTGAGACAATATTT 59.171 33.333 0.00 0.00 0.00 1.40
6117 6417 7.337938 TGTACCATGTGATGTGAGACAATATT 58.662 34.615 0.00 0.00 0.00 1.28
6118 6418 6.888105 TGTACCATGTGATGTGAGACAATAT 58.112 36.000 0.00 0.00 0.00 1.28
6121 6421 4.563374 CCTGTACCATGTGATGTGAGACAA 60.563 45.833 0.00 0.00 0.00 3.18
6127 6427 1.382522 GGCCTGTACCATGTGATGTG 58.617 55.000 0.00 0.00 0.00 3.21
6139 6439 2.075355 CTGGGTGTTTGGGGCCTGTA 62.075 60.000 0.84 0.00 0.00 2.74
6294 6594 3.059386 GGCGAAACCGGATGGCAA 61.059 61.111 9.46 0.00 39.70 4.52
6324 6624 2.427320 GCCAGATATGCTCGGCCA 59.573 61.111 2.24 0.00 37.50 5.36
6627 6950 3.881926 TAAGGACCTGCCCAGCCCA 62.882 63.158 0.00 0.00 37.37 5.36
6628 6951 3.015145 TAAGGACCTGCCCAGCCC 61.015 66.667 0.00 0.00 37.37 5.19
6629 6952 2.592308 CTAAGGACCTGCCCAGCC 59.408 66.667 0.00 0.00 37.37 4.85
6630 6953 2.124529 GCTAAGGACCTGCCCAGC 60.125 66.667 0.00 0.00 37.86 4.85
6631 6954 1.078143 GTGCTAAGGACCTGCCCAG 60.078 63.158 0.00 0.00 37.37 4.45
6704 7029 3.067320 TGTCCAAAATGCAAATGTCACGA 59.933 39.130 0.00 0.00 0.00 4.35
6785 7110 1.069703 CACATCTTGCTGTCACCAACG 60.070 52.381 0.00 0.00 0.00 4.10
6853 7202 2.552315 TGCCTCAAAAGAACCGAACATC 59.448 45.455 0.00 0.00 0.00 3.06
6880 7230 3.555966 CTGGATACCATTCTTGGAACCC 58.444 50.000 0.00 0.00 46.92 4.11
6953 7307 6.681729 TGAAACAGAGGGAGTACAAATACT 57.318 37.500 0.00 0.00 44.74 2.12
6954 7308 7.739498 TTTGAAACAGAGGGAGTACAAATAC 57.261 36.000 0.00 0.00 0.00 1.89
6955 7309 8.934023 ATTTTGAAACAGAGGGAGTACAAATA 57.066 30.769 0.00 0.00 31.16 1.40
6956 7310 7.839680 ATTTTGAAACAGAGGGAGTACAAAT 57.160 32.000 0.00 0.00 31.16 2.32
6957 7311 8.754991 TTATTTTGAAACAGAGGGAGTACAAA 57.245 30.769 0.00 0.00 0.00 2.83
6958 7312 7.996644 ACTTATTTTGAAACAGAGGGAGTACAA 59.003 33.333 0.00 0.00 0.00 2.41
7000 7354 3.801594 ACGTTCCAAAATGAATGTTGTGC 59.198 39.130 0.00 0.00 40.65 4.57
7004 7358 5.074115 TCCCTACGTTCCAAAATGAATGTT 58.926 37.500 0.00 0.00 40.65 2.71
7008 7377 4.360951 ACTCCCTACGTTCCAAAATGAA 57.639 40.909 0.00 0.00 0.00 2.57
7082 7451 2.867109 ACTCCATGTCCCAGAGTTTG 57.133 50.000 0.00 0.00 37.60 2.93
7156 7612 5.376854 TGTTTCTTTTAGCCAGAGCATTC 57.623 39.130 0.00 0.00 43.56 2.67
7270 7729 2.438954 GCCTGCGCGCAAATTTCTG 61.439 57.895 35.50 20.72 0.00 3.02
7271 7730 2.126346 GCCTGCGCGCAAATTTCT 60.126 55.556 35.50 0.00 0.00 2.52
7272 7731 2.430582 TGCCTGCGCGCAAATTTC 60.431 55.556 35.50 20.61 35.32 2.17
7275 7734 3.807538 CTCTGCCTGCGCGCAAAT 61.808 61.111 35.50 0.00 38.56 2.32
7287 7746 0.102481 CATTGCATGGGCTTCTCTGC 59.898 55.000 0.00 0.00 41.91 4.26
7288 7747 1.471119 ACATTGCATGGGCTTCTCTG 58.529 50.000 0.00 0.00 41.91 3.35
7289 7748 2.226962 AACATTGCATGGGCTTCTCT 57.773 45.000 0.00 0.00 41.91 3.10
7290 7749 2.028748 ACAAACATTGCATGGGCTTCTC 60.029 45.455 0.00 0.00 41.91 2.87
7295 7754 1.881591 ACAACAAACATTGCATGGGC 58.118 45.000 0.00 0.00 41.68 5.36
7363 7822 7.361031 GCTCAAATGCTCTTGATATGGATAGTG 60.361 40.741 2.15 0.00 34.86 2.74
7422 7888 4.932200 GTCCCAACTGTCTGAACTTATGAG 59.068 45.833 0.00 0.00 0.00 2.90
7451 7917 9.815936 CTTGCATTTTTATTTTTGGTCTGAATC 57.184 29.630 0.00 0.00 0.00 2.52
7559 8025 4.357018 TGTAGTCTATTGAGCTGTCGTG 57.643 45.455 0.00 0.00 0.00 4.35
7584 8050 4.310022 AATCTGGGTATTTTTCGGGTCA 57.690 40.909 0.00 0.00 0.00 4.02
7648 8114 5.243283 AGTCCTCTTAGTTCGAGTGCTTTTA 59.757 40.000 0.00 0.00 0.00 1.52
7915 8381 1.226717 GAGGATCTGTGACGGCGTC 60.227 63.158 31.68 31.68 0.00 5.19
7921 8387 1.284657 CGCACATGAGGATCTGTGAC 58.715 55.000 15.00 6.96 42.72 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.