Multiple sequence alignment - TraesCS2A01G400300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G400300 chr2A 100.000 5130 0 0 1 5130 653676518 653681647 0.000000e+00 9474.0
1 TraesCS2A01G400300 chr2A 86.275 102 14 0 97 198 631201762 631201661 1.510000e-20 111.0
2 TraesCS2A01G400300 chr2D 90.521 2954 151 50 2188 5095 509942404 509945274 0.000000e+00 3784.0
3 TraesCS2A01G400300 chr2D 91.825 1211 49 22 921 2107 509941195 509942379 0.000000e+00 1642.0
4 TraesCS2A01G400300 chr2D 86.555 238 18 2 235 458 509940729 509940966 3.070000e-62 250.0
5 TraesCS2A01G400300 chr2D 95.370 108 1 2 787 894 509940998 509941101 8.830000e-38 169.0
6 TraesCS2A01G400300 chr2D 90.099 101 9 1 1 101 607089330 607089231 4.170000e-26 130.0
7 TraesCS2A01G400300 chr2B 93.156 1768 75 13 2013 3769 599596013 599597745 0.000000e+00 2553.0
8 TraesCS2A01G400300 chr2B 90.249 1046 51 18 972 1991 599595010 599596030 0.000000e+00 1319.0
9 TraesCS2A01G400300 chr2B 87.429 883 46 24 4245 5096 599598260 599599108 0.000000e+00 955.0
10 TraesCS2A01G400300 chr2B 95.238 462 16 4 3801 4260 599597745 599598202 0.000000e+00 726.0
11 TraesCS2A01G400300 chr2B 96.479 284 10 0 451 734 635083326 635083609 2.160000e-128 470.0
12 TraesCS2A01G400300 chr2B 96.774 279 9 0 456 734 481659861 481660139 2.800000e-127 466.0
13 TraesCS2A01G400300 chr2B 86.531 245 24 4 222 458 599594455 599594698 1.420000e-65 261.0
14 TraesCS2A01G400300 chr2B 86.228 167 9 6 730 894 599594694 599594848 8.830000e-38 169.0
15 TraesCS2A01G400300 chr2B 89.011 91 10 0 97 187 782542444 782542354 4.200000e-21 113.0
16 TraesCS2A01G400300 chr6A 77.557 1105 202 34 2503 3588 475000347 474999270 4.360000e-175 625.0
17 TraesCS2A01G400300 chr6A 81.214 692 108 15 1155 1830 475001871 475001186 5.840000e-149 538.0
18 TraesCS2A01G400300 chr6A 96.479 284 9 1 452 734 133802832 133803115 7.780000e-128 468.0
19 TraesCS2A01G400300 chr6A 91.919 99 8 0 1 99 14065827 14065925 6.930000e-29 139.0
20 TraesCS2A01G400300 chr6D 86.735 490 52 8 1354 1830 335377120 335376631 2.720000e-147 532.0
21 TraesCS2A01G400300 chr6D 80.357 616 107 9 2503 3110 335375779 335375170 6.060000e-124 455.0
22 TraesCS2A01G400300 chr6D 91.262 103 8 1 1 103 45499059 45498958 6.930000e-29 139.0
23 TraesCS2A01G400300 chr6D 89.691 97 10 0 1 97 428661343 428661247 1.940000e-24 124.0
24 TraesCS2A01G400300 chr6D 89.691 97 10 0 1 97 452403713 452403809 1.940000e-24 124.0
25 TraesCS2A01G400300 chr6B 86.327 490 54 8 1354 1830 485291518 485292007 5.890000e-144 521.0
26 TraesCS2A01G400300 chr6B 96.797 281 9 0 454 734 279088094 279087814 2.160000e-128 470.0
27 TraesCS2A01G400300 chr6B 80.000 620 107 13 2499 3110 485292906 485293516 4.710000e-120 442.0
28 TraesCS2A01G400300 chr6B 91.463 82 7 0 97 178 713697870 713697951 4.200000e-21 113.0
29 TraesCS2A01G400300 chr7A 96.842 285 9 0 452 736 529331798 529331514 1.290000e-130 477.0
30 TraesCS2A01G400300 chr7A 91.463 82 7 0 97 178 435004007 435004088 4.200000e-21 113.0
31 TraesCS2A01G400300 chr5A 97.133 279 8 0 456 734 31133719 31133997 6.010000e-129 472.0
32 TraesCS2A01G400300 chr5A 91.463 82 7 0 97 178 377937264 377937345 4.200000e-21 113.0
33 TraesCS2A01G400300 chrUn 96.786 280 9 0 456 735 220163438 220163717 7.780000e-128 468.0
34 TraesCS2A01G400300 chr4A 96.466 283 10 0 456 738 692757206 692756924 7.780000e-128 468.0
35 TraesCS2A01G400300 chr4A 87.156 109 12 2 97 203 46310364 46310472 6.980000e-24 122.0
36 TraesCS2A01G400300 chr1A 96.140 285 11 0 450 734 252325154 252325438 2.800000e-127 466.0
37 TraesCS2A01G400300 chr1A 77.564 156 30 4 1671 1822 357063031 357063185 7.070000e-14 89.8
38 TraesCS2A01G400300 chr7B 90.909 99 9 0 1 99 467444264 467444362 3.220000e-27 134.0
39 TraesCS2A01G400300 chr5D 91.667 96 8 0 1 96 286161883 286161788 3.220000e-27 134.0
40 TraesCS2A01G400300 chr5D 89.899 99 10 0 1 99 503736166 503736068 1.500000e-25 128.0
41 TraesCS2A01G400300 chr5B 89.899 99 10 0 1 99 44233495 44233397 1.500000e-25 128.0
42 TraesCS2A01G400300 chr3A 89.000 100 9 2 97 194 121635310 121635409 6.980000e-24 122.0
43 TraesCS2A01G400300 chr7D 87.879 99 11 1 97 195 474532264 474532167 1.170000e-21 115.0
44 TraesCS2A01G400300 chr3D 91.463 82 7 0 97 178 553424019 553424100 4.200000e-21 113.0
45 TraesCS2A01G400300 chr1D 77.564 156 30 4 1671 1822 285442421 285442575 7.070000e-14 89.8
46 TraesCS2A01G400300 chr1B 77.564 156 30 4 1671 1822 388009185 388009339 7.070000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G400300 chr2A 653676518 653681647 5129 False 9474.000000 9474 100.000000 1 5130 1 chr2A.!!$F1 5129
1 TraesCS2A01G400300 chr2D 509940729 509945274 4545 False 1461.250000 3784 91.067750 235 5095 4 chr2D.!!$F1 4860
2 TraesCS2A01G400300 chr2B 599594455 599599108 4653 False 997.166667 2553 89.805167 222 5096 6 chr2B.!!$F3 4874
3 TraesCS2A01G400300 chr6A 474999270 475001871 2601 True 581.500000 625 79.385500 1155 3588 2 chr6A.!!$R1 2433
4 TraesCS2A01G400300 chr6D 335375170 335377120 1950 True 493.500000 532 83.546000 1354 3110 2 chr6D.!!$R3 1756
5 TraesCS2A01G400300 chr6B 485291518 485293516 1998 False 481.500000 521 83.163500 1354 3110 2 chr6B.!!$F2 1756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.179092 GTCCATTCTACCCCGAACGG 60.179 60.000 6.25 6.25 0.00 4.44 F
57 58 0.179092 CCATTCTACCCCGAACGGAC 60.179 60.000 15.07 0.00 37.50 4.79 F
476 491 0.253160 AGGCTGGTCATAGTGGGGAA 60.253 55.000 0.00 0.00 0.00 3.97 F
837 854 0.446222 CCGTGTGACGCCTTTAATGG 59.554 55.000 2.98 2.98 40.91 3.16 F
1275 1487 0.617820 CCCTCCCCCGTATCCATAGG 60.618 65.000 0.00 0.00 0.00 2.57 F
1891 2118 0.792640 CTCACGATAATCGCATGCCC 59.207 55.000 13.15 0.00 45.12 5.36 F
2265 3055 0.933047 GCGTTTGTTCTTTGCCGGAC 60.933 55.000 5.05 0.00 0.00 4.79 F
2727 3599 1.000496 GCAGCTCTACGGTATGTACCC 60.000 57.143 3.71 0.00 43.51 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2164 0.035725 CGTCCCCTGTTCCTAAACCC 60.036 60.000 0.00 0.00 34.28 4.11 R
2010 2247 2.736400 GCAAAGCAAATCCCATTCCGAG 60.736 50.000 0.00 0.00 0.00 4.63 R
2148 2938 1.202582 ACAGCTGGCTACGTTACAGAG 59.797 52.381 19.93 10.02 34.21 3.35 R
2746 3618 0.103026 TCGATGCCTGATGGTTCGAG 59.897 55.000 7.70 0.00 41.55 4.04 R
2747 3619 0.752658 ATCGATGCCTGATGGTTCGA 59.247 50.000 0.00 12.07 46.12 3.71 R
3870 4772 0.320683 CGTCCATCTCACACCTTGCA 60.321 55.000 0.00 0.00 0.00 4.08 R
3889 4791 0.396139 TCCATTTCCAGCAGGATGGC 60.396 55.000 11.93 0.00 45.26 4.40 R
4502 5478 0.303493 CGTCACGGTCAAACCAGTTG 59.697 55.000 0.00 0.00 38.47 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.098555 CGTTGGGCCGCACTATTC 58.901 61.111 0.00 0.00 0.00 1.75
36 37 2.808958 CGTTGGGCCGCACTATTCG 61.809 63.158 0.00 0.00 0.00 3.34
37 38 1.743995 GTTGGGCCGCACTATTCGT 60.744 57.895 0.00 0.00 0.00 3.85
38 39 1.448893 TTGGGCCGCACTATTCGTC 60.449 57.895 0.00 0.00 0.00 4.20
39 40 2.588034 GGGCCGCACTATTCGTCC 60.588 66.667 0.00 0.00 0.00 4.79
40 41 2.185867 GGCCGCACTATTCGTCCA 59.814 61.111 0.00 0.00 0.00 4.02
41 42 1.227556 GGCCGCACTATTCGTCCAT 60.228 57.895 0.00 0.00 0.00 3.41
42 43 0.814010 GGCCGCACTATTCGTCCATT 60.814 55.000 0.00 0.00 0.00 3.16
43 44 0.582005 GCCGCACTATTCGTCCATTC 59.418 55.000 0.00 0.00 0.00 2.67
44 45 1.806623 GCCGCACTATTCGTCCATTCT 60.807 52.381 0.00 0.00 0.00 2.40
45 46 2.545113 GCCGCACTATTCGTCCATTCTA 60.545 50.000 0.00 0.00 0.00 2.10
46 47 3.050619 CCGCACTATTCGTCCATTCTAC 58.949 50.000 0.00 0.00 0.00 2.59
47 48 3.050619 CGCACTATTCGTCCATTCTACC 58.949 50.000 0.00 0.00 0.00 3.18
48 49 3.391049 GCACTATTCGTCCATTCTACCC 58.609 50.000 0.00 0.00 0.00 3.69
49 50 3.802675 GCACTATTCGTCCATTCTACCCC 60.803 52.174 0.00 0.00 0.00 4.95
50 51 2.626743 ACTATTCGTCCATTCTACCCCG 59.373 50.000 0.00 0.00 0.00 5.73
51 52 1.784358 ATTCGTCCATTCTACCCCGA 58.216 50.000 0.00 0.00 0.00 5.14
52 53 1.559368 TTCGTCCATTCTACCCCGAA 58.441 50.000 0.00 0.00 32.57 4.30
53 54 0.819582 TCGTCCATTCTACCCCGAAC 59.180 55.000 0.00 0.00 0.00 3.95
54 55 0.526954 CGTCCATTCTACCCCGAACG 60.527 60.000 0.00 0.00 0.00 3.95
55 56 0.179092 GTCCATTCTACCCCGAACGG 60.179 60.000 6.25 6.25 0.00 4.44
56 57 0.324552 TCCATTCTACCCCGAACGGA 60.325 55.000 15.07 0.00 33.30 4.69
57 58 0.179092 CCATTCTACCCCGAACGGAC 60.179 60.000 15.07 0.00 37.50 4.79
58 59 0.526954 CATTCTACCCCGAACGGACG 60.527 60.000 15.07 6.77 37.50 4.79
59 60 2.288788 ATTCTACCCCGAACGGACGC 62.289 60.000 15.07 0.00 37.50 5.19
60 61 3.751246 CTACCCCGAACGGACGCA 61.751 66.667 15.07 0.00 37.50 5.24
61 62 3.976902 CTACCCCGAACGGACGCAC 62.977 68.421 15.07 0.00 37.50 5.34
71 72 4.329545 GGACGCACCCAGGCAAGA 62.330 66.667 0.00 0.00 0.00 3.02
72 73 2.045926 GACGCACCCAGGCAAGAT 60.046 61.111 0.00 0.00 0.00 2.40
73 74 1.220749 GACGCACCCAGGCAAGATA 59.779 57.895 0.00 0.00 0.00 1.98
74 75 0.811616 GACGCACCCAGGCAAGATAG 60.812 60.000 0.00 0.00 0.00 2.08
75 76 1.524621 CGCACCCAGGCAAGATAGG 60.525 63.158 0.00 0.00 0.00 2.57
76 77 1.152881 GCACCCAGGCAAGATAGGG 60.153 63.158 0.00 0.00 46.96 3.53
79 80 1.447643 CCCAGGCAAGATAGGGTCG 59.552 63.158 0.00 0.00 36.52 4.79
80 81 1.227674 CCAGGCAAGATAGGGTCGC 60.228 63.158 0.00 0.00 0.00 5.19
81 82 1.592669 CAGGCAAGATAGGGTCGCG 60.593 63.158 0.00 0.00 0.00 5.87
82 83 2.967615 GGCAAGATAGGGTCGCGC 60.968 66.667 0.00 0.00 0.00 6.86
83 84 3.330853 GCAAGATAGGGTCGCGCG 61.331 66.667 26.76 26.76 0.00 6.86
84 85 2.658593 CAAGATAGGGTCGCGCGG 60.659 66.667 31.69 11.75 0.00 6.46
85 86 3.145551 AAGATAGGGTCGCGCGGT 61.146 61.111 31.69 14.72 0.00 5.68
86 87 3.426117 AAGATAGGGTCGCGCGGTG 62.426 63.158 31.69 1.17 0.00 4.94
87 88 4.944372 GATAGGGTCGCGCGGTGG 62.944 72.222 31.69 0.71 0.00 4.61
98 99 2.349755 GCGGTGGAGTTGGCCTTA 59.650 61.111 3.32 0.00 0.00 2.69
99 100 1.302993 GCGGTGGAGTTGGCCTTAA 60.303 57.895 3.32 0.00 0.00 1.85
100 101 0.679960 GCGGTGGAGTTGGCCTTAAT 60.680 55.000 3.32 0.00 0.00 1.40
101 102 1.407712 GCGGTGGAGTTGGCCTTAATA 60.408 52.381 3.32 0.00 0.00 0.98
102 103 2.748465 GCGGTGGAGTTGGCCTTAATAT 60.748 50.000 3.32 0.00 0.00 1.28
103 104 3.551846 CGGTGGAGTTGGCCTTAATATT 58.448 45.455 3.32 0.00 0.00 1.28
104 105 3.951680 CGGTGGAGTTGGCCTTAATATTT 59.048 43.478 3.32 0.00 0.00 1.40
105 106 4.401202 CGGTGGAGTTGGCCTTAATATTTT 59.599 41.667 3.32 0.00 0.00 1.82
106 107 5.449999 CGGTGGAGTTGGCCTTAATATTTTC 60.450 44.000 3.32 0.00 0.00 2.29
107 108 5.656859 GGTGGAGTTGGCCTTAATATTTTCT 59.343 40.000 3.32 0.00 0.00 2.52
108 109 6.154534 GGTGGAGTTGGCCTTAATATTTTCTT 59.845 38.462 3.32 0.00 0.00 2.52
109 110 7.258441 GTGGAGTTGGCCTTAATATTTTCTTC 58.742 38.462 3.32 0.00 0.00 2.87
110 111 7.122799 GTGGAGTTGGCCTTAATATTTTCTTCT 59.877 37.037 3.32 0.00 0.00 2.85
111 112 8.333235 TGGAGTTGGCCTTAATATTTTCTTCTA 58.667 33.333 3.32 0.00 0.00 2.10
112 113 9.355916 GGAGTTGGCCTTAATATTTTCTTCTAT 57.644 33.333 3.32 0.00 0.00 1.98
153 154 3.692791 AAGTTTGACTTTGACCGAAGC 57.307 42.857 0.00 0.00 34.11 3.86
154 155 2.919228 AGTTTGACTTTGACCGAAGCT 58.081 42.857 0.00 0.00 0.00 3.74
155 156 4.067972 AGTTTGACTTTGACCGAAGCTA 57.932 40.909 0.00 0.00 0.00 3.32
156 157 4.448210 AGTTTGACTTTGACCGAAGCTAA 58.552 39.130 0.00 0.00 0.00 3.09
157 158 5.063880 AGTTTGACTTTGACCGAAGCTAAT 58.936 37.500 0.00 0.00 0.00 1.73
158 159 6.228258 AGTTTGACTTTGACCGAAGCTAATA 58.772 36.000 0.00 0.00 0.00 0.98
159 160 6.879458 AGTTTGACTTTGACCGAAGCTAATAT 59.121 34.615 0.00 0.00 0.00 1.28
160 161 6.662414 TTGACTTTGACCGAAGCTAATATG 57.338 37.500 0.00 0.00 0.00 1.78
161 162 4.570772 TGACTTTGACCGAAGCTAATATGC 59.429 41.667 0.00 0.00 0.00 3.14
162 163 3.555956 ACTTTGACCGAAGCTAATATGCG 59.444 43.478 0.00 0.00 38.13 4.73
163 164 3.446310 TTGACCGAAGCTAATATGCGA 57.554 42.857 0.00 0.00 38.13 5.10
164 165 3.446310 TGACCGAAGCTAATATGCGAA 57.554 42.857 0.00 0.00 38.13 4.70
165 166 3.381045 TGACCGAAGCTAATATGCGAAG 58.619 45.455 0.00 0.00 38.13 3.79
166 167 3.181479 TGACCGAAGCTAATATGCGAAGT 60.181 43.478 0.00 0.00 38.13 3.01
167 168 4.037089 TGACCGAAGCTAATATGCGAAGTA 59.963 41.667 0.00 0.00 38.13 2.24
168 169 4.940463 ACCGAAGCTAATATGCGAAGTAA 58.060 39.130 0.00 0.00 38.13 2.24
169 170 5.353938 ACCGAAGCTAATATGCGAAGTAAA 58.646 37.500 0.00 0.00 38.13 2.01
170 171 5.989777 ACCGAAGCTAATATGCGAAGTAAAT 59.010 36.000 0.00 0.00 38.13 1.40
171 172 7.149973 ACCGAAGCTAATATGCGAAGTAAATA 58.850 34.615 0.00 0.00 38.13 1.40
172 173 7.654520 ACCGAAGCTAATATGCGAAGTAAATAA 59.345 33.333 0.00 0.00 38.13 1.40
173 174 8.492748 CCGAAGCTAATATGCGAAGTAAATAAA 58.507 33.333 0.00 0.00 38.13 1.40
174 175 9.858247 CGAAGCTAATATGCGAAGTAAATAAAA 57.142 29.630 0.00 0.00 38.13 1.52
177 178 9.646336 AGCTAATATGCGAAGTAAATAAAAACG 57.354 29.630 0.00 0.00 38.13 3.60
178 179 9.640974 GCTAATATGCGAAGTAAATAAAAACGA 57.359 29.630 0.00 0.00 0.00 3.85
183 184 8.958175 ATGCGAAGTAAATAAAAACGAATGAA 57.042 26.923 0.00 0.00 0.00 2.57
184 185 8.429739 TGCGAAGTAAATAAAAACGAATGAAG 57.570 30.769 0.00 0.00 0.00 3.02
185 186 8.071368 TGCGAAGTAAATAAAAACGAATGAAGT 58.929 29.630 0.00 0.00 0.00 3.01
186 187 9.532697 GCGAAGTAAATAAAAACGAATGAAGTA 57.467 29.630 0.00 0.00 0.00 2.24
212 213 8.959705 AATTATTTATATCCTTACGCTAGCCC 57.040 34.615 9.66 0.00 0.00 5.19
213 214 7.484993 TTATTTATATCCTTACGCTAGCCCA 57.515 36.000 9.66 0.00 0.00 5.36
214 215 5.811796 TTTATATCCTTACGCTAGCCCAA 57.188 39.130 9.66 2.17 0.00 4.12
215 216 3.679824 ATATCCTTACGCTAGCCCAAC 57.320 47.619 9.66 0.00 0.00 3.77
216 217 1.200519 ATCCTTACGCTAGCCCAACA 58.799 50.000 9.66 0.00 0.00 3.33
217 218 1.200519 TCCTTACGCTAGCCCAACAT 58.799 50.000 9.66 0.00 0.00 2.71
218 219 2.390696 TCCTTACGCTAGCCCAACATA 58.609 47.619 9.66 0.00 0.00 2.29
219 220 2.101917 TCCTTACGCTAGCCCAACATAC 59.898 50.000 9.66 0.00 0.00 2.39
220 221 2.102588 CCTTACGCTAGCCCAACATACT 59.897 50.000 9.66 0.00 0.00 2.12
227 228 2.533266 AGCCCAACATACTATGCTCG 57.467 50.000 0.00 0.00 0.00 5.03
243 244 1.699656 CTCGATTTGCACCGCTGGAG 61.700 60.000 1.50 0.00 0.00 3.86
248 249 4.687215 TGCACCGCTGGAGTCTGC 62.687 66.667 1.50 2.06 34.96 4.26
317 318 2.482374 GCTCACTGCACGCAATCC 59.518 61.111 0.00 0.00 42.31 3.01
363 364 2.849294 GCCTAGGCCCAAGAGATAAG 57.151 55.000 24.19 0.00 34.56 1.73
376 377 5.066117 CCAAGAGATAAGTGTACTACTCGCA 59.934 44.000 0.00 0.00 39.18 5.10
407 422 3.811083 TCTGTTCGCTTTCCTTACCAAA 58.189 40.909 0.00 0.00 0.00 3.28
453 468 7.506328 AACATTTACTCCAGTGGTTTAACTC 57.494 36.000 9.54 0.00 0.00 3.01
454 469 6.002082 ACATTTACTCCAGTGGTTTAACTCC 58.998 40.000 9.54 0.00 0.00 3.85
455 470 5.899631 TTTACTCCAGTGGTTTAACTCCT 57.100 39.130 9.54 0.00 0.00 3.69
456 471 5.899631 TTACTCCAGTGGTTTAACTCCTT 57.100 39.130 9.54 0.00 0.00 3.36
457 472 6.999705 TTACTCCAGTGGTTTAACTCCTTA 57.000 37.500 9.54 0.00 0.00 2.69
458 473 5.485209 ACTCCAGTGGTTTAACTCCTTAG 57.515 43.478 9.54 0.00 0.00 2.18
459 474 4.286291 ACTCCAGTGGTTTAACTCCTTAGG 59.714 45.833 9.54 0.00 0.00 2.69
460 475 3.008704 TCCAGTGGTTTAACTCCTTAGGC 59.991 47.826 9.54 0.00 0.00 3.93
461 476 3.009143 CCAGTGGTTTAACTCCTTAGGCT 59.991 47.826 0.00 0.00 0.00 4.58
462 477 4.003648 CAGTGGTTTAACTCCTTAGGCTG 58.996 47.826 0.00 0.00 0.00 4.85
463 478 3.009143 AGTGGTTTAACTCCTTAGGCTGG 59.991 47.826 0.00 0.00 0.00 4.85
464 479 2.983898 TGGTTTAACTCCTTAGGCTGGT 59.016 45.455 0.00 0.00 0.00 4.00
465 480 3.008704 TGGTTTAACTCCTTAGGCTGGTC 59.991 47.826 0.00 0.00 0.00 4.02
466 481 3.008704 GGTTTAACTCCTTAGGCTGGTCA 59.991 47.826 0.00 0.00 0.00 4.02
467 482 4.324331 GGTTTAACTCCTTAGGCTGGTCAT 60.324 45.833 0.00 0.00 0.00 3.06
468 483 5.104652 GGTTTAACTCCTTAGGCTGGTCATA 60.105 44.000 0.00 0.00 0.00 2.15
469 484 5.871396 TTAACTCCTTAGGCTGGTCATAG 57.129 43.478 0.00 0.00 0.00 2.23
470 485 3.406512 ACTCCTTAGGCTGGTCATAGT 57.593 47.619 0.00 0.00 0.00 2.12
471 486 3.034635 ACTCCTTAGGCTGGTCATAGTG 58.965 50.000 0.00 0.00 0.00 2.74
472 487 2.366916 CTCCTTAGGCTGGTCATAGTGG 59.633 54.545 0.00 0.00 0.00 4.00
473 488 1.417890 CCTTAGGCTGGTCATAGTGGG 59.582 57.143 0.00 0.00 0.00 4.61
474 489 1.417890 CTTAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
475 490 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
476 491 0.253160 AGGCTGGTCATAGTGGGGAA 60.253 55.000 0.00 0.00 0.00 3.97
477 492 0.846693 GGCTGGTCATAGTGGGGAAT 59.153 55.000 0.00 0.00 0.00 3.01
478 493 2.054799 GGCTGGTCATAGTGGGGAATA 58.945 52.381 0.00 0.00 0.00 1.75
479 494 2.441750 GGCTGGTCATAGTGGGGAATAA 59.558 50.000 0.00 0.00 0.00 1.40
480 495 3.477530 GCTGGTCATAGTGGGGAATAAC 58.522 50.000 0.00 0.00 0.00 1.89
481 496 3.136626 GCTGGTCATAGTGGGGAATAACT 59.863 47.826 0.00 0.00 0.00 2.24
482 497 4.385310 GCTGGTCATAGTGGGGAATAACTT 60.385 45.833 0.00 0.00 0.00 2.66
483 498 5.163237 GCTGGTCATAGTGGGGAATAACTTA 60.163 44.000 0.00 0.00 0.00 2.24
484 499 6.634039 GCTGGTCATAGTGGGGAATAACTTAA 60.634 42.308 0.00 0.00 0.00 1.85
485 500 7.273457 TGGTCATAGTGGGGAATAACTTAAA 57.727 36.000 0.00 0.00 0.00 1.52
486 501 7.114095 TGGTCATAGTGGGGAATAACTTAAAC 58.886 38.462 0.00 0.00 0.00 2.01
487 502 7.037153 TGGTCATAGTGGGGAATAACTTAAACT 60.037 37.037 0.00 0.00 0.00 2.66
488 503 8.488668 GGTCATAGTGGGGAATAACTTAAACTA 58.511 37.037 0.00 0.00 0.00 2.24
489 504 9.543783 GTCATAGTGGGGAATAACTTAAACTAG 57.456 37.037 0.00 0.00 0.00 2.57
490 505 9.275572 TCATAGTGGGGAATAACTTAAACTAGT 57.724 33.333 0.00 0.00 0.00 2.57
494 509 8.883302 AGTGGGGAATAACTTAAACTAGTAACA 58.117 33.333 0.00 0.00 0.00 2.41
495 510 9.676861 GTGGGGAATAACTTAAACTAGTAACAT 57.323 33.333 0.00 0.00 0.00 2.71
534 549 7.834881 TCTATGTTACTACCTTCATAGTGGG 57.165 40.000 0.00 0.00 40.01 4.61
535 550 7.359849 TCTATGTTACTACCTTCATAGTGGGT 58.640 38.462 0.00 0.00 40.01 4.51
536 551 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
541 556 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
542 557 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
543 558 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
544 559 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
545 560 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
546 561 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
547 562 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
548 563 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
549 564 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
550 565 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
551 566 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
552 567 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
553 568 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
554 569 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
555 570 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
601 616 9.461312 ACTTTGTAGACTTATTATGCATTGGAA 57.539 29.630 3.54 0.00 0.00 3.53
604 619 8.220755 TGTAGACTTATTATGCATTGGAAACC 57.779 34.615 3.54 0.00 0.00 3.27
605 620 6.377327 AGACTTATTATGCATTGGAAACCG 57.623 37.500 3.54 0.00 0.00 4.44
606 621 4.932146 ACTTATTATGCATTGGAAACCGC 58.068 39.130 3.54 0.00 0.00 5.68
607 622 4.644685 ACTTATTATGCATTGGAAACCGCT 59.355 37.500 3.54 0.00 0.00 5.52
608 623 5.825679 ACTTATTATGCATTGGAAACCGCTA 59.174 36.000 3.54 0.00 0.00 4.26
609 624 6.490040 ACTTATTATGCATTGGAAACCGCTAT 59.510 34.615 3.54 0.00 0.00 2.97
610 625 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
611 626 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
612 627 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
613 628 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
614 629 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
615 630 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
616 631 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
617 632 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
618 633 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
619 634 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
620 635 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
649 664 8.732746 TTATGTTACTCTATTTGCCTCTTTCC 57.267 34.615 0.00 0.00 0.00 3.13
650 665 6.374417 TGTTACTCTATTTGCCTCTTTCCT 57.626 37.500 0.00 0.00 0.00 3.36
651 666 6.407202 TGTTACTCTATTTGCCTCTTTCCTC 58.593 40.000 0.00 0.00 0.00 3.71
652 667 6.013725 TGTTACTCTATTTGCCTCTTTCCTCA 60.014 38.462 0.00 0.00 0.00 3.86
653 668 5.707066 ACTCTATTTGCCTCTTTCCTCAT 57.293 39.130 0.00 0.00 0.00 2.90
654 669 6.072199 ACTCTATTTGCCTCTTTCCTCATT 57.928 37.500 0.00 0.00 0.00 2.57
655 670 7.200434 ACTCTATTTGCCTCTTTCCTCATTA 57.800 36.000 0.00 0.00 0.00 1.90
656 671 7.633789 ACTCTATTTGCCTCTTTCCTCATTAA 58.366 34.615 0.00 0.00 0.00 1.40
657 672 7.554476 ACTCTATTTGCCTCTTTCCTCATTAAC 59.446 37.037 0.00 0.00 0.00 2.01
658 673 7.633789 TCTATTTGCCTCTTTCCTCATTAACT 58.366 34.615 0.00 0.00 0.00 2.24
659 674 8.768397 TCTATTTGCCTCTTTCCTCATTAACTA 58.232 33.333 0.00 0.00 0.00 2.24
660 675 7.631717 ATTTGCCTCTTTCCTCATTAACTAC 57.368 36.000 0.00 0.00 0.00 2.73
661 676 6.374417 TTGCCTCTTTCCTCATTAACTACT 57.626 37.500 0.00 0.00 0.00 2.57
662 677 6.374417 TGCCTCTTTCCTCATTAACTACTT 57.626 37.500 0.00 0.00 0.00 2.24
663 678 7.490657 TGCCTCTTTCCTCATTAACTACTTA 57.509 36.000 0.00 0.00 0.00 2.24
664 679 7.328737 TGCCTCTTTCCTCATTAACTACTTAC 58.671 38.462 0.00 0.00 0.00 2.34
665 680 6.762187 GCCTCTTTCCTCATTAACTACTTACC 59.238 42.308 0.00 0.00 0.00 2.85
666 681 7.580882 GCCTCTTTCCTCATTAACTACTTACCA 60.581 40.741 0.00 0.00 0.00 3.25
667 682 7.764901 CCTCTTTCCTCATTAACTACTTACCAC 59.235 40.741 0.00 0.00 0.00 4.16
668 683 8.197592 TCTTTCCTCATTAACTACTTACCACA 57.802 34.615 0.00 0.00 0.00 4.17
669 684 8.822805 TCTTTCCTCATTAACTACTTACCACAT 58.177 33.333 0.00 0.00 0.00 3.21
670 685 9.099454 CTTTCCTCATTAACTACTTACCACATC 57.901 37.037 0.00 0.00 0.00 3.06
671 686 7.727578 TCCTCATTAACTACTTACCACATCA 57.272 36.000 0.00 0.00 0.00 3.07
672 687 8.319057 TCCTCATTAACTACTTACCACATCAT 57.681 34.615 0.00 0.00 0.00 2.45
673 688 8.421784 TCCTCATTAACTACTTACCACATCATC 58.578 37.037 0.00 0.00 0.00 2.92
674 689 8.204160 CCTCATTAACTACTTACCACATCATCA 58.796 37.037 0.00 0.00 0.00 3.07
675 690 9.770097 CTCATTAACTACTTACCACATCATCAT 57.230 33.333 0.00 0.00 0.00 2.45
681 696 7.538575 ACTACTTACCACATCATCATTTTTGC 58.461 34.615 0.00 0.00 0.00 3.68
682 697 6.594788 ACTTACCACATCATCATTTTTGCT 57.405 33.333 0.00 0.00 0.00 3.91
683 698 6.996509 ACTTACCACATCATCATTTTTGCTT 58.003 32.000 0.00 0.00 0.00 3.91
684 699 8.121305 ACTTACCACATCATCATTTTTGCTTA 57.879 30.769 0.00 0.00 0.00 3.09
685 700 8.752187 ACTTACCACATCATCATTTTTGCTTAT 58.248 29.630 0.00 0.00 0.00 1.73
686 701 8.929827 TTACCACATCATCATTTTTGCTTATG 57.070 30.769 0.00 0.00 0.00 1.90
687 702 6.938507 ACCACATCATCATTTTTGCTTATGT 58.061 32.000 0.00 0.00 0.00 2.29
688 703 6.814644 ACCACATCATCATTTTTGCTTATGTG 59.185 34.615 0.00 0.00 41.50 3.21
689 704 7.036829 CCACATCATCATTTTTGCTTATGTGA 58.963 34.615 12.35 0.00 43.44 3.58
690 705 7.009815 CCACATCATCATTTTTGCTTATGTGAC 59.990 37.037 12.35 0.00 43.44 3.67
691 706 7.542824 CACATCATCATTTTTGCTTATGTGACA 59.457 33.333 0.00 0.00 43.44 3.58
692 707 8.255206 ACATCATCATTTTTGCTTATGTGACAT 58.745 29.630 2.65 2.65 0.00 3.06
693 708 8.752254 CATCATCATTTTTGCTTATGTGACATC 58.248 33.333 0.00 0.00 0.00 3.06
694 709 8.058667 TCATCATTTTTGCTTATGTGACATCT 57.941 30.769 0.00 0.00 0.00 2.90
695 710 9.176460 TCATCATTTTTGCTTATGTGACATCTA 57.824 29.630 0.00 0.00 0.00 1.98
696 711 9.961265 CATCATTTTTGCTTATGTGACATCTAT 57.039 29.630 0.00 0.00 0.00 1.98
697 712 9.961265 ATCATTTTTGCTTATGTGACATCTATG 57.039 29.630 0.00 0.00 0.00 2.23
698 713 8.959548 TCATTTTTGCTTATGTGACATCTATGT 58.040 29.630 0.00 0.00 45.16 2.29
699 714 9.577110 CATTTTTGCTTATGTGACATCTATGTT 57.423 29.630 0.00 0.00 41.95 2.71
702 717 9.448438 TTTTGCTTATGTGACATCTATGTTACT 57.552 29.630 16.14 7.15 44.65 2.24
704 719 9.529325 TTGCTTATGTGACATCTATGTTACTAC 57.471 33.333 16.14 6.65 44.65 2.73
705 720 8.141909 TGCTTATGTGACATCTATGTTACTACC 58.858 37.037 16.14 4.63 44.65 3.18
706 721 8.361139 GCTTATGTGACATCTATGTTACTACCT 58.639 37.037 16.14 4.74 44.65 3.08
710 725 8.762481 TGTGACATCTATGTTACTACCTATGT 57.238 34.615 16.14 0.00 44.65 2.29
711 726 9.197306 TGTGACATCTATGTTACTACCTATGTT 57.803 33.333 16.14 0.00 44.65 2.71
717 732 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
718 733 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
719 734 9.310449 CTATGTTACTACCTATGTTACTCCCAT 57.690 37.037 0.00 0.00 0.00 4.00
720 735 7.983166 TGTTACTACCTATGTTACTCCCATT 57.017 36.000 0.00 0.00 0.00 3.16
721 736 9.664777 ATGTTACTACCTATGTTACTCCCATTA 57.335 33.333 0.00 0.00 0.00 1.90
722 737 9.664777 TGTTACTACCTATGTTACTCCCATTAT 57.335 33.333 0.00 0.00 0.00 1.28
723 738 9.924650 GTTACTACCTATGTTACTCCCATTATG 57.075 37.037 0.00 0.00 0.00 1.90
724 739 9.886337 TTACTACCTATGTTACTCCCATTATGA 57.114 33.333 0.00 0.00 0.00 2.15
725 740 8.191534 ACTACCTATGTTACTCCCATTATGAC 57.808 38.462 0.00 0.00 0.00 3.06
726 741 6.435292 ACCTATGTTACTCCCATTATGACC 57.565 41.667 0.00 0.00 0.00 4.02
727 742 5.908831 ACCTATGTTACTCCCATTATGACCA 59.091 40.000 0.00 0.00 0.00 4.02
728 743 6.043243 ACCTATGTTACTCCCATTATGACCAG 59.957 42.308 0.00 0.00 0.00 4.00
745 760 0.887933 CAGCCTTACCAAAACCGCAT 59.112 50.000 0.00 0.00 0.00 4.73
785 800 4.383861 CAGCAGAGGACCGCAGCA 62.384 66.667 14.75 0.00 0.00 4.41
786 801 4.079850 AGCAGAGGACCGCAGCAG 62.080 66.667 14.75 0.00 0.00 4.24
788 803 4.383861 CAGAGGACCGCAGCAGCA 62.384 66.667 0.82 0.00 42.27 4.41
789 804 4.079850 AGAGGACCGCAGCAGCAG 62.080 66.667 0.82 0.00 42.27 4.24
790 805 4.074526 GAGGACCGCAGCAGCAGA 62.075 66.667 0.82 0.00 42.27 4.26
791 806 4.079850 AGGACCGCAGCAGCAGAG 62.080 66.667 0.82 0.00 42.27 3.35
792 807 4.385405 GGACCGCAGCAGCAGAGT 62.385 66.667 0.82 0.00 42.27 3.24
793 808 2.573869 GACCGCAGCAGCAGAGTA 59.426 61.111 0.82 0.00 42.27 2.59
794 809 1.807573 GACCGCAGCAGCAGAGTAC 60.808 63.158 0.82 0.00 42.27 2.73
795 810 2.219325 GACCGCAGCAGCAGAGTACT 62.219 60.000 0.82 0.00 42.27 2.73
837 854 0.446222 CCGTGTGACGCCTTTAATGG 59.554 55.000 2.98 2.98 40.91 3.16
914 979 1.944709 CCCTAAATTTAACCCGAGCCG 59.055 52.381 0.00 0.00 0.00 5.52
915 980 1.332686 CCTAAATTTAACCCGAGCCGC 59.667 52.381 0.00 0.00 0.00 6.53
916 981 1.332686 CTAAATTTAACCCGAGCCGCC 59.667 52.381 0.00 0.00 0.00 6.13
941 1032 1.321074 CCTACGCGTCTCCCTTTCCT 61.321 60.000 18.63 0.00 0.00 3.36
1066 1175 2.997897 AGCCGGTCCAGTCCAGTC 60.998 66.667 1.90 0.00 0.00 3.51
1067 1176 4.083862 GCCGGTCCAGTCCAGTCC 62.084 72.222 1.90 0.00 0.00 3.85
1068 1177 3.760035 CCGGTCCAGTCCAGTCCG 61.760 72.222 0.00 0.00 40.72 4.79
1070 1179 2.603776 GGTCCAGTCCAGTCCGGT 60.604 66.667 0.00 0.00 35.57 5.28
1108 1221 1.618030 GAGGGGAGAGGAGAGCAGA 59.382 63.158 0.00 0.00 0.00 4.26
1273 1443 1.472460 CCCCTCCCCCGTATCCATA 59.528 63.158 0.00 0.00 0.00 2.74
1275 1487 0.617820 CCCTCCCCCGTATCCATAGG 60.618 65.000 0.00 0.00 0.00 2.57
1465 1692 4.394712 CACTCGGAGCACACCCCC 62.395 72.222 4.58 0.00 0.00 5.40
1891 2118 0.792640 CTCACGATAATCGCATGCCC 59.207 55.000 13.15 0.00 45.12 5.36
1895 2122 2.030893 CACGATAATCGCATGCCCAAAT 60.031 45.455 13.15 0.69 45.12 2.32
1901 2128 1.874915 CGCATGCCCAAATGAAGCG 60.875 57.895 13.15 0.00 37.68 4.68
1937 2164 2.042433 TCTTGGTGAGGGGGTTAATTGG 59.958 50.000 0.00 0.00 0.00 3.16
1993 2220 3.002102 CCGGAATGGGATTTGCTTTTTG 58.998 45.455 0.00 0.00 0.00 2.44
1994 2221 3.306641 CCGGAATGGGATTTGCTTTTTGA 60.307 43.478 0.00 0.00 0.00 2.69
1995 2222 3.928375 CGGAATGGGATTTGCTTTTTGAG 59.072 43.478 0.00 0.00 0.00 3.02
1996 2223 4.321899 CGGAATGGGATTTGCTTTTTGAGA 60.322 41.667 0.00 0.00 0.00 3.27
1997 2224 5.550290 GGAATGGGATTTGCTTTTTGAGAA 58.450 37.500 0.00 0.00 0.00 2.87
1998 2225 6.175471 GGAATGGGATTTGCTTTTTGAGAAT 58.825 36.000 0.00 0.00 0.00 2.40
1999 2226 6.656270 GGAATGGGATTTGCTTTTTGAGAATT 59.344 34.615 0.00 0.00 0.00 2.17
2068 2857 2.186903 ACCGCATGATCGTGGTCC 59.813 61.111 16.59 0.00 46.98 4.46
2129 2918 8.860780 AGCTTTACTCTTTCAGAAAATCAGAT 57.139 30.769 0.00 0.00 0.00 2.90
2148 2938 8.807667 ATCAGATTTCATTCAACTTTTCACAC 57.192 30.769 0.00 0.00 0.00 3.82
2168 2958 1.202582 CTCTGTAACGTAGCCAGCTGT 59.797 52.381 13.81 0.00 0.00 4.40
2169 2959 2.422479 CTCTGTAACGTAGCCAGCTGTA 59.578 50.000 13.81 0.00 0.00 2.74
2170 2960 2.422479 TCTGTAACGTAGCCAGCTGTAG 59.578 50.000 13.81 0.00 0.00 2.74
2171 2961 2.163815 CTGTAACGTAGCCAGCTGTAGT 59.836 50.000 13.81 2.05 0.00 2.73
2172 2962 2.094906 TGTAACGTAGCCAGCTGTAGTG 60.095 50.000 13.81 0.00 0.00 2.74
2173 2963 1.254026 AACGTAGCCAGCTGTAGTGA 58.746 50.000 13.81 0.00 0.00 3.41
2174 2964 1.254026 ACGTAGCCAGCTGTAGTGAA 58.746 50.000 13.81 0.00 0.00 3.18
2175 2965 1.067776 ACGTAGCCAGCTGTAGTGAAC 60.068 52.381 13.81 1.23 0.00 3.18
2176 2966 1.202582 CGTAGCCAGCTGTAGTGAACT 59.797 52.381 13.81 0.94 0.00 3.01
2177 2967 2.611518 GTAGCCAGCTGTAGTGAACTG 58.388 52.381 13.81 0.00 0.00 3.16
2178 2968 1.051812 AGCCAGCTGTAGTGAACTGT 58.948 50.000 13.81 0.00 0.00 3.55
2179 2969 2.248248 AGCCAGCTGTAGTGAACTGTA 58.752 47.619 13.81 0.00 0.00 2.74
2180 2970 2.232452 AGCCAGCTGTAGTGAACTGTAG 59.768 50.000 13.81 0.00 0.00 2.74
2181 2971 2.611518 CCAGCTGTAGTGAACTGTAGC 58.388 52.381 13.81 10.87 36.87 3.58
2182 2972 2.029020 CCAGCTGTAGTGAACTGTAGCA 60.029 50.000 13.81 2.72 38.14 3.49
2183 2973 2.989840 CAGCTGTAGTGAACTGTAGCAC 59.010 50.000 5.25 5.80 38.14 4.40
2184 2974 2.628178 AGCTGTAGTGAACTGTAGCACA 59.372 45.455 17.47 4.02 38.14 4.57
2185 2975 2.731976 GCTGTAGTGAACTGTAGCACAC 59.268 50.000 13.79 10.62 37.48 3.82
2186 2976 3.553096 GCTGTAGTGAACTGTAGCACACT 60.553 47.826 13.79 12.82 44.17 3.55
2187 2977 3.977427 TGTAGTGAACTGTAGCACACTG 58.023 45.455 16.27 0.00 42.37 3.66
2188 2978 3.383505 TGTAGTGAACTGTAGCACACTGT 59.616 43.478 16.27 0.00 42.37 3.55
2190 2980 3.873910 AGTGAACTGTAGCACACTGTTT 58.126 40.909 13.79 0.00 45.95 2.83
2191 2981 5.018539 AGTGAACTGTAGCACACTGTTTA 57.981 39.130 13.79 7.89 45.95 2.01
2265 3055 0.933047 GCGTTTGTTCTTTGCCGGAC 60.933 55.000 5.05 0.00 0.00 4.79
2280 3070 1.139058 CCGGACCAGATTCTCGGAATT 59.861 52.381 0.00 0.00 42.94 2.17
2292 3082 4.224715 TCTCGGAATTCACTAGCGTATG 57.775 45.455 7.93 0.00 0.00 2.39
2373 3238 3.347411 CAGCCCTGCGTACTCTAAC 57.653 57.895 0.00 0.00 0.00 2.34
2406 3271 6.470557 CAATTGTTGCTATTTTGACTTGGG 57.529 37.500 0.00 0.00 0.00 4.12
2435 3300 4.520874 TGATCTGTTTGTTTGGCCGATAAA 59.479 37.500 0.00 0.00 0.00 1.40
2445 3310 2.653726 TGGCCGATAAACTGATTGCAT 58.346 42.857 0.00 0.00 0.00 3.96
2450 3322 4.224433 CCGATAAACTGATTGCATGCATC 58.776 43.478 23.37 19.90 0.00 3.91
2451 3323 4.224433 CGATAAACTGATTGCATGCATCC 58.776 43.478 23.37 16.37 0.00 3.51
2474 3346 6.319152 TCCGAATTTGGTTTTCAGTTACTGAA 59.681 34.615 22.16 22.16 46.93 3.02
2647 3519 2.636412 CGTCCTCGCCTCCAACAGA 61.636 63.158 0.00 0.00 0.00 3.41
2727 3599 1.000496 GCAGCTCTACGGTATGTACCC 60.000 57.143 3.71 0.00 43.51 3.69
2743 3615 3.610669 CCCTCTGATCGCCCCTCG 61.611 72.222 0.00 0.00 40.15 4.63
2768 3658 2.029918 TCGAACCATCAGGCATCGATAG 60.030 50.000 0.00 0.00 45.77 2.08
2790 3682 3.658757 TTTTCAGTGGCCTTAATGTGC 57.341 42.857 3.32 0.00 0.00 4.57
2791 3683 2.584835 TTCAGTGGCCTTAATGTGCT 57.415 45.000 3.32 0.00 0.00 4.40
2792 3684 1.825090 TCAGTGGCCTTAATGTGCTG 58.175 50.000 3.32 0.00 0.00 4.41
2812 3704 1.746615 ACATGGACACGCAGATGGC 60.747 57.895 0.00 0.00 39.90 4.40
2922 3814 4.416738 GTGGCAGAGGACCAGGGC 62.417 72.222 0.00 0.00 38.04 5.19
3157 4049 7.981225 AGTGCCATGTTATTATCCATTTTGAAC 59.019 33.333 0.00 0.00 0.00 3.18
3176 4068 2.821366 CCAGCTCACGGCCATGAC 60.821 66.667 0.00 0.00 43.05 3.06
3593 4485 2.561569 CCAAGACTGGTGAGTTTTCGT 58.438 47.619 0.00 0.00 38.00 3.85
3652 4549 2.751166 TGTTTTTGTTGGGGTGTGTG 57.249 45.000 0.00 0.00 0.00 3.82
3666 4566 3.093057 GGTGTGTGACCTCTCTGTATCT 58.907 50.000 0.00 0.00 42.25 1.98
3715 4615 1.453762 CCCGGACCTACGACCTCATC 61.454 65.000 0.73 0.00 35.47 2.92
3727 4627 2.141517 GACCTCATCCATGCTGATTCG 58.858 52.381 0.00 0.00 0.00 3.34
3807 4707 5.514274 TTGGTTTTCTTGTTCTTGGCTAG 57.486 39.130 0.00 0.00 0.00 3.42
3818 4718 8.514594 TCTTGTTCTTGGCTAGTTCAAATTATG 58.485 33.333 0.00 0.00 0.00 1.90
3820 4720 8.856153 TGTTCTTGGCTAGTTCAAATTATGTA 57.144 30.769 0.00 0.00 0.00 2.29
3821 4721 9.290988 TGTTCTTGGCTAGTTCAAATTATGTAA 57.709 29.630 0.00 0.00 0.00 2.41
3870 4772 7.725251 TCTGATAAATTTGAGCTTGTGGTTTT 58.275 30.769 0.00 0.00 0.00 2.43
3879 4781 1.405391 GCTTGTGGTTTTGCAAGGTGT 60.405 47.619 0.00 0.00 41.54 4.16
3889 4791 0.320683 TGCAAGGTGTGAGATGGACG 60.321 55.000 0.00 0.00 0.00 4.79
3912 4814 1.064166 ATCCTGCTGGAAATGGACAGG 60.064 52.381 17.04 0.00 46.80 4.00
4101 5003 2.280628 GGGGACGAGAAACAATAGCAG 58.719 52.381 0.00 0.00 0.00 4.24
4103 5005 2.346803 GGACGAGAAACAATAGCAGCA 58.653 47.619 0.00 0.00 0.00 4.41
4113 5015 2.092646 ACAATAGCAGCACCCCGAAATA 60.093 45.455 0.00 0.00 0.00 1.40
4156 5058 1.871408 CGACAGATACTGGGCAGATGC 60.871 57.143 0.00 0.00 35.51 3.91
4167 5069 1.805254 GCAGATGCCACACACATCC 59.195 57.895 0.00 0.00 44.08 3.51
4208 5110 2.798145 CGCCCTGTGGTTTTGAAGTTTC 60.798 50.000 0.00 0.00 0.00 2.78
4242 5144 5.106830 GGGTAGTTCGTTTGGTGAAATAGTG 60.107 44.000 0.00 0.00 0.00 2.74
4324 5299 2.045536 GGAAGGACAGCCAGCCAG 60.046 66.667 0.00 0.00 36.29 4.85
4325 5300 2.749441 GAAGGACAGCCAGCCAGC 60.749 66.667 0.00 0.00 36.29 4.85
4326 5301 4.357279 AAGGACAGCCAGCCAGCC 62.357 66.667 0.00 0.00 36.29 4.85
4361 5336 7.420002 TGACAGAGATTTCATTGTGTTTCTTG 58.580 34.615 0.00 0.00 0.00 3.02
4372 5347 5.637006 TTGTGTTTCTTGCTGTACAAAGT 57.363 34.783 7.09 0.00 37.96 2.66
4407 5382 3.254024 TTCCCCTCGGCTGTTCTGC 62.254 63.158 0.00 0.00 0.00 4.26
4436 5411 4.647564 ACTGAATCAGACCCAAGAATGT 57.352 40.909 18.20 0.00 35.18 2.71
4447 5422 7.672660 TCAGACCCAAGAATGTTAAGAGTACTA 59.327 37.037 0.00 0.00 0.00 1.82
4448 5423 8.478877 CAGACCCAAGAATGTTAAGAGTACTAT 58.521 37.037 0.00 0.00 0.00 2.12
4449 5424 9.047947 AGACCCAAGAATGTTAAGAGTACTATT 57.952 33.333 8.02 8.02 0.00 1.73
4478 5453 5.048991 TCGGTGATTTGGCTCTTAACTTTTC 60.049 40.000 0.00 0.00 0.00 2.29
4479 5454 5.048713 CGGTGATTTGGCTCTTAACTTTTCT 60.049 40.000 0.00 0.00 0.00 2.52
4481 5456 6.863645 GGTGATTTGGCTCTTAACTTTTCTTC 59.136 38.462 0.00 0.00 0.00 2.87
4482 5457 6.863645 GTGATTTGGCTCTTAACTTTTCTTCC 59.136 38.462 0.00 0.00 0.00 3.46
4520 5496 0.661020 CCAACTGGTTTGACCGTGAC 59.339 55.000 0.00 0.00 42.58 3.67
4638 5614 1.669115 GCTGCCGCTCTGAACTTGA 60.669 57.895 0.00 0.00 0.00 3.02
4642 5618 0.674895 GCCGCTCTGAACTTGACCAT 60.675 55.000 0.00 0.00 0.00 3.55
4643 5619 1.813513 CCGCTCTGAACTTGACCATT 58.186 50.000 0.00 0.00 0.00 3.16
4644 5620 1.466167 CCGCTCTGAACTTGACCATTG 59.534 52.381 0.00 0.00 0.00 2.82
4645 5621 1.135859 CGCTCTGAACTTGACCATTGC 60.136 52.381 0.00 0.00 0.00 3.56
4646 5622 1.200948 GCTCTGAACTTGACCATTGCC 59.799 52.381 0.00 0.00 0.00 4.52
4647 5623 2.787994 CTCTGAACTTGACCATTGCCT 58.212 47.619 0.00 0.00 0.00 4.75
4648 5624 3.152341 CTCTGAACTTGACCATTGCCTT 58.848 45.455 0.00 0.00 0.00 4.35
4649 5625 3.565307 TCTGAACTTGACCATTGCCTTT 58.435 40.909 0.00 0.00 0.00 3.11
4650 5626 4.724399 TCTGAACTTGACCATTGCCTTTA 58.276 39.130 0.00 0.00 0.00 1.85
4651 5627 5.136828 TCTGAACTTGACCATTGCCTTTAA 58.863 37.500 0.00 0.00 0.00 1.52
4652 5628 5.009610 TCTGAACTTGACCATTGCCTTTAAC 59.990 40.000 0.00 0.00 0.00 2.01
4653 5629 4.038642 TGAACTTGACCATTGCCTTTAACC 59.961 41.667 0.00 0.00 0.00 2.85
4654 5630 3.844640 ACTTGACCATTGCCTTTAACCT 58.155 40.909 0.00 0.00 0.00 3.50
4655 5631 4.223144 ACTTGACCATTGCCTTTAACCTT 58.777 39.130 0.00 0.00 0.00 3.50
4656 5632 4.280929 ACTTGACCATTGCCTTTAACCTTC 59.719 41.667 0.00 0.00 0.00 3.46
4657 5633 3.161866 TGACCATTGCCTTTAACCTTCC 58.838 45.455 0.00 0.00 0.00 3.46
4658 5634 3.161866 GACCATTGCCTTTAACCTTCCA 58.838 45.455 0.00 0.00 0.00 3.53
4659 5635 3.769300 GACCATTGCCTTTAACCTTCCAT 59.231 43.478 0.00 0.00 0.00 3.41
4701 5678 4.794334 TGGTTGTAAGTTTGGTGTACCAT 58.206 39.130 4.31 0.00 46.97 3.55
4762 5740 8.510505 AGCTTCTTTCTTTCTTTACAGCATAAG 58.489 33.333 0.00 0.00 0.00 1.73
4778 5756 3.758554 GCATAAGCCTGTTTTTCAGAGGA 59.241 43.478 0.00 0.00 46.27 3.71
4804 5782 3.383825 AGGACGAGCTAACAATTACCGAT 59.616 43.478 0.00 0.00 0.00 4.18
4809 5787 6.335777 ACGAGCTAACAATTACCGATACTTT 58.664 36.000 0.00 0.00 0.00 2.66
4900 5895 0.032130 GTCGGTGCTGAAGACAGACA 59.968 55.000 0.00 0.00 46.03 3.41
4973 5968 6.183360 CGGATTTCGTGGCAGATATATAACAC 60.183 42.308 0.00 0.00 0.00 3.32
4984 5979 7.661437 GGCAGATATATAACACAAATCTGTCCA 59.339 37.037 11.14 0.00 43.46 4.02
4990 5985 8.985315 ATATAACACAAATCTGTCCATGTCAT 57.015 30.769 0.00 0.00 31.64 3.06
5010 6005 1.555075 TGCCATACTGTTCTGTCCTCC 59.445 52.381 0.00 0.00 0.00 4.30
5038 6040 2.802816 ACACGTTTTGTTTTGCTGCAAA 59.197 36.364 22.84 22.84 33.09 3.68
5039 6041 3.248602 ACACGTTTTGTTTTGCTGCAAAA 59.751 34.783 30.53 30.53 40.41 2.44
5096 6114 7.979444 TCTTGAAAAAGGGAACATAGTACAG 57.021 36.000 0.00 0.00 0.00 2.74
5097 6115 7.514721 TCTTGAAAAAGGGAACATAGTACAGT 58.485 34.615 0.00 0.00 0.00 3.55
5098 6116 8.653191 TCTTGAAAAAGGGAACATAGTACAGTA 58.347 33.333 0.00 0.00 0.00 2.74
5099 6117 9.280174 CTTGAAAAAGGGAACATAGTACAGTAA 57.720 33.333 0.00 0.00 0.00 2.24
5100 6118 9.629878 TTGAAAAAGGGAACATAGTACAGTAAA 57.370 29.630 0.00 0.00 0.00 2.01
5101 6119 9.629878 TGAAAAAGGGAACATAGTACAGTAAAA 57.370 29.630 0.00 0.00 0.00 1.52
5123 6141 4.966850 AAATCGCATAGTACGTACATGC 57.033 40.909 31.46 31.46 37.36 4.06
5124 6142 3.917329 ATCGCATAGTACGTACATGCT 57.083 42.857 34.13 24.66 37.95 3.79
5125 6143 5.366829 AATCGCATAGTACGTACATGCTA 57.633 39.130 34.13 29.67 37.95 3.49
5126 6144 4.137849 TCGCATAGTACGTACATGCTAC 57.862 45.455 34.13 20.64 37.95 3.58
5127 6145 3.811497 TCGCATAGTACGTACATGCTACT 59.189 43.478 34.13 19.57 37.95 2.57
5128 6146 4.084171 TCGCATAGTACGTACATGCTACTC 60.084 45.833 34.13 20.21 37.95 2.59
5129 6147 4.319261 CGCATAGTACGTACATGCTACTCA 60.319 45.833 34.13 13.38 37.95 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.808958 CGAATAGTGCGGCCCAACG 61.809 63.158 0.00 0.00 0.00 4.10
19 20 1.702491 GACGAATAGTGCGGCCCAAC 61.702 60.000 0.00 0.00 0.00 3.77
20 21 1.448893 GACGAATAGTGCGGCCCAA 60.449 57.895 0.00 0.00 0.00 4.12
21 22 2.185867 GACGAATAGTGCGGCCCA 59.814 61.111 0.00 0.00 0.00 5.36
24 25 0.582005 GAATGGACGAATAGTGCGGC 59.418 55.000 0.00 0.00 44.84 6.53
25 26 2.225068 AGAATGGACGAATAGTGCGG 57.775 50.000 0.00 0.00 44.84 5.69
26 27 3.050619 GGTAGAATGGACGAATAGTGCG 58.949 50.000 0.00 0.00 44.84 5.34
27 28 3.391049 GGGTAGAATGGACGAATAGTGC 58.609 50.000 0.00 0.00 41.99 4.40
28 29 3.552273 CGGGGTAGAATGGACGAATAGTG 60.552 52.174 0.00 0.00 0.00 2.74
29 30 2.626743 CGGGGTAGAATGGACGAATAGT 59.373 50.000 0.00 0.00 0.00 2.12
30 31 2.889045 TCGGGGTAGAATGGACGAATAG 59.111 50.000 0.00 0.00 0.00 1.73
31 32 2.948115 TCGGGGTAGAATGGACGAATA 58.052 47.619 0.00 0.00 0.00 1.75
32 33 1.784358 TCGGGGTAGAATGGACGAAT 58.216 50.000 0.00 0.00 0.00 3.34
33 34 1.205417 GTTCGGGGTAGAATGGACGAA 59.795 52.381 0.00 0.00 37.91 3.85
34 35 0.819582 GTTCGGGGTAGAATGGACGA 59.180 55.000 0.00 0.00 32.25 4.20
35 36 0.526954 CGTTCGGGGTAGAATGGACG 60.527 60.000 0.00 0.00 34.43 4.79
36 37 3.357504 CGTTCGGGGTAGAATGGAC 57.642 57.895 0.00 0.00 34.43 4.02
38 39 4.848685 CCGTTCGGGGTAGAATGG 57.151 61.111 3.04 3.90 46.85 3.16
39 40 0.526954 CGTCCGTTCGGGGTAGAATG 60.527 60.000 11.37 0.00 37.00 2.67
40 41 1.811860 CGTCCGTTCGGGGTAGAAT 59.188 57.895 11.37 0.00 36.01 2.40
41 42 2.993471 GCGTCCGTTCGGGGTAGAA 61.993 63.158 11.37 0.00 36.01 2.10
42 43 3.443045 GCGTCCGTTCGGGGTAGA 61.443 66.667 11.37 0.00 36.01 2.59
43 44 3.751246 TGCGTCCGTTCGGGGTAG 61.751 66.667 11.37 2.36 36.01 3.18
44 45 4.054825 GTGCGTCCGTTCGGGGTA 62.055 66.667 11.37 1.22 36.01 3.69
54 55 2.252072 TATCTTGCCTGGGTGCGTCC 62.252 60.000 0.00 0.00 0.00 4.79
55 56 0.811616 CTATCTTGCCTGGGTGCGTC 60.812 60.000 0.00 0.00 0.00 5.19
56 57 1.221840 CTATCTTGCCTGGGTGCGT 59.778 57.895 0.00 0.00 0.00 5.24
57 58 1.524621 CCTATCTTGCCTGGGTGCG 60.525 63.158 0.00 0.00 0.00 5.34
58 59 1.152881 CCCTATCTTGCCTGGGTGC 60.153 63.158 0.00 0.00 35.13 5.01
61 62 1.447643 CGACCCTATCTTGCCTGGG 59.552 63.158 0.00 0.00 44.89 4.45
62 63 1.227674 GCGACCCTATCTTGCCTGG 60.228 63.158 0.00 0.00 0.00 4.45
63 64 1.592669 CGCGACCCTATCTTGCCTG 60.593 63.158 0.00 0.00 0.00 4.85
64 65 2.815308 CGCGACCCTATCTTGCCT 59.185 61.111 0.00 0.00 0.00 4.75
65 66 2.967615 GCGCGACCCTATCTTGCC 60.968 66.667 12.10 0.00 0.00 4.52
66 67 3.330853 CGCGCGACCCTATCTTGC 61.331 66.667 28.94 0.00 0.00 4.01
67 68 2.658593 CCGCGCGACCCTATCTTG 60.659 66.667 34.63 6.11 0.00 3.02
68 69 3.145551 ACCGCGCGACCCTATCTT 61.146 61.111 34.63 0.00 0.00 2.40
69 70 3.900892 CACCGCGCGACCCTATCT 61.901 66.667 34.63 0.00 0.00 1.98
70 71 4.944372 CCACCGCGCGACCCTATC 62.944 72.222 34.63 0.00 0.00 2.08
80 81 3.599285 TAAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
81 82 0.679960 ATTAAGGCCAACTCCACCGC 60.680 55.000 5.01 0.00 0.00 5.68
82 83 2.702592 TATTAAGGCCAACTCCACCG 57.297 50.000 5.01 0.00 0.00 4.94
83 84 5.656859 AGAAAATATTAAGGCCAACTCCACC 59.343 40.000 5.01 0.00 0.00 4.61
84 85 6.775594 AGAAAATATTAAGGCCAACTCCAC 57.224 37.500 5.01 0.00 0.00 4.02
85 86 7.182060 AGAAGAAAATATTAAGGCCAACTCCA 58.818 34.615 5.01 0.00 0.00 3.86
86 87 7.646548 AGAAGAAAATATTAAGGCCAACTCC 57.353 36.000 5.01 0.00 0.00 3.85
133 134 3.279434 AGCTTCGGTCAAAGTCAAACTT 58.721 40.909 0.00 0.00 40.80 2.66
134 135 2.919228 AGCTTCGGTCAAAGTCAAACT 58.081 42.857 0.00 0.00 0.00 2.66
135 136 4.806342 TTAGCTTCGGTCAAAGTCAAAC 57.194 40.909 0.00 0.00 0.00 2.93
136 137 6.403200 GCATATTAGCTTCGGTCAAAGTCAAA 60.403 38.462 0.00 0.00 0.00 2.69
137 138 5.064707 GCATATTAGCTTCGGTCAAAGTCAA 59.935 40.000 0.00 0.00 0.00 3.18
138 139 4.570772 GCATATTAGCTTCGGTCAAAGTCA 59.429 41.667 0.00 0.00 0.00 3.41
139 140 4.318121 CGCATATTAGCTTCGGTCAAAGTC 60.318 45.833 0.00 0.00 0.00 3.01
140 141 3.555956 CGCATATTAGCTTCGGTCAAAGT 59.444 43.478 0.00 0.00 0.00 2.66
141 142 3.802139 TCGCATATTAGCTTCGGTCAAAG 59.198 43.478 0.00 0.00 0.00 2.77
142 143 3.787785 TCGCATATTAGCTTCGGTCAAA 58.212 40.909 0.00 0.00 0.00 2.69
143 144 3.446310 TCGCATATTAGCTTCGGTCAA 57.554 42.857 0.00 0.00 0.00 3.18
144 145 3.181479 ACTTCGCATATTAGCTTCGGTCA 60.181 43.478 0.00 0.00 0.00 4.02
145 146 3.381949 ACTTCGCATATTAGCTTCGGTC 58.618 45.455 0.00 0.00 0.00 4.79
146 147 3.454371 ACTTCGCATATTAGCTTCGGT 57.546 42.857 0.00 0.00 0.00 4.69
147 148 5.900339 TTTACTTCGCATATTAGCTTCGG 57.100 39.130 0.00 0.00 0.00 4.30
148 149 9.858247 TTTTATTTACTTCGCATATTAGCTTCG 57.142 29.630 0.00 0.00 0.00 3.79
151 152 9.646336 CGTTTTTATTTACTTCGCATATTAGCT 57.354 29.630 0.00 0.00 0.00 3.32
152 153 9.640974 TCGTTTTTATTTACTTCGCATATTAGC 57.359 29.630 0.00 0.00 0.00 3.09
158 159 8.958175 TTCATTCGTTTTTATTTACTTCGCAT 57.042 26.923 0.00 0.00 0.00 4.73
159 160 8.071368 ACTTCATTCGTTTTTATTTACTTCGCA 58.929 29.630 0.00 0.00 0.00 5.10
160 161 8.431020 ACTTCATTCGTTTTTATTTACTTCGC 57.569 30.769 0.00 0.00 0.00 4.70
186 187 9.392259 GGGCTAGCGTAAGGATATAAATAATTT 57.608 33.333 9.00 0.00 38.28 1.82
187 188 8.545472 TGGGCTAGCGTAAGGATATAAATAATT 58.455 33.333 9.00 0.00 38.28 1.40
188 189 8.086143 TGGGCTAGCGTAAGGATATAAATAAT 57.914 34.615 9.00 0.00 38.28 1.28
189 190 7.484993 TGGGCTAGCGTAAGGATATAAATAA 57.515 36.000 9.00 0.00 38.28 1.40
190 191 7.038870 TGTTGGGCTAGCGTAAGGATATAAATA 60.039 37.037 9.00 0.00 38.28 1.40
191 192 6.171213 GTTGGGCTAGCGTAAGGATATAAAT 58.829 40.000 9.00 0.00 38.28 1.40
192 193 5.070714 TGTTGGGCTAGCGTAAGGATATAAA 59.929 40.000 9.00 0.00 38.28 1.40
193 194 4.589798 TGTTGGGCTAGCGTAAGGATATAA 59.410 41.667 9.00 0.00 38.28 0.98
194 195 4.154176 TGTTGGGCTAGCGTAAGGATATA 58.846 43.478 9.00 0.00 38.28 0.86
195 196 2.969950 TGTTGGGCTAGCGTAAGGATAT 59.030 45.455 9.00 0.00 38.28 1.63
196 197 2.390696 TGTTGGGCTAGCGTAAGGATA 58.609 47.619 9.00 0.00 38.28 2.59
197 198 1.200519 TGTTGGGCTAGCGTAAGGAT 58.799 50.000 9.00 0.00 38.28 3.24
198 199 1.200519 ATGTTGGGCTAGCGTAAGGA 58.799 50.000 9.00 0.00 38.28 3.36
199 200 2.102588 AGTATGTTGGGCTAGCGTAAGG 59.897 50.000 9.00 0.00 38.28 2.69
200 201 3.454371 AGTATGTTGGGCTAGCGTAAG 57.546 47.619 9.00 0.00 43.44 2.34
201 202 4.798263 GCATAGTATGTTGGGCTAGCGTAA 60.798 45.833 9.00 3.28 0.00 3.18
202 203 3.305813 GCATAGTATGTTGGGCTAGCGTA 60.306 47.826 9.00 0.00 0.00 4.42
203 204 2.548067 GCATAGTATGTTGGGCTAGCGT 60.548 50.000 9.00 0.00 0.00 5.07
204 205 2.069273 GCATAGTATGTTGGGCTAGCG 58.931 52.381 9.00 0.00 0.00 4.26
205 206 3.330267 GAGCATAGTATGTTGGGCTAGC 58.670 50.000 6.04 6.04 0.00 3.42
206 207 3.255888 TCGAGCATAGTATGTTGGGCTAG 59.744 47.826 11.73 3.14 0.00 3.42
207 208 3.227614 TCGAGCATAGTATGTTGGGCTA 58.772 45.455 11.73 0.00 0.00 3.93
208 209 2.039418 TCGAGCATAGTATGTTGGGCT 58.961 47.619 11.73 1.97 0.00 5.19
209 210 2.526304 TCGAGCATAGTATGTTGGGC 57.474 50.000 11.73 0.00 0.00 5.36
210 211 4.319766 GCAAATCGAGCATAGTATGTTGGG 60.320 45.833 11.73 0.93 0.00 4.12
211 212 4.273235 TGCAAATCGAGCATAGTATGTTGG 59.727 41.667 11.73 7.28 37.02 3.77
212 213 5.200454 GTGCAAATCGAGCATAGTATGTTG 58.800 41.667 11.73 7.98 44.79 3.33
213 214 4.273480 GGTGCAAATCGAGCATAGTATGTT 59.727 41.667 11.73 5.57 44.79 2.71
214 215 3.809832 GGTGCAAATCGAGCATAGTATGT 59.190 43.478 11.73 0.00 44.79 2.29
215 216 3.120889 CGGTGCAAATCGAGCATAGTATG 60.121 47.826 5.73 5.73 44.79 2.39
216 217 3.059884 CGGTGCAAATCGAGCATAGTAT 58.940 45.455 0.83 0.00 44.79 2.12
217 218 2.469826 CGGTGCAAATCGAGCATAGTA 58.530 47.619 0.83 0.00 44.79 1.82
218 219 1.290203 CGGTGCAAATCGAGCATAGT 58.710 50.000 0.83 0.00 44.79 2.12
219 220 0.041839 GCGGTGCAAATCGAGCATAG 60.042 55.000 9.14 0.71 44.79 2.23
220 221 0.461870 AGCGGTGCAAATCGAGCATA 60.462 50.000 9.14 0.00 44.79 3.14
227 228 0.674895 AGACTCCAGCGGTGCAAATC 60.675 55.000 9.63 3.79 0.00 2.17
264 265 0.179004 ACATGGGCGTCTTTGGTTGA 60.179 50.000 0.00 0.00 0.00 3.18
359 360 2.223433 GCGGTGCGAGTAGTACACTTAT 60.223 50.000 2.52 0.00 37.72 1.73
363 364 1.069378 GTGCGGTGCGAGTAGTACAC 61.069 60.000 2.52 0.00 37.18 2.90
407 422 2.203788 TCAGGCTCCGGTCCTTGT 60.204 61.111 14.00 0.00 0.00 3.16
453 468 1.417890 CCCACTATGACCAGCCTAAGG 59.582 57.143 0.00 0.00 0.00 2.69
454 469 1.417890 CCCCACTATGACCAGCCTAAG 59.582 57.143 0.00 0.00 0.00 2.18
455 470 1.009060 TCCCCACTATGACCAGCCTAA 59.991 52.381 0.00 0.00 0.00 2.69
456 471 0.639943 TCCCCACTATGACCAGCCTA 59.360 55.000 0.00 0.00 0.00 3.93
457 472 0.253160 TTCCCCACTATGACCAGCCT 60.253 55.000 0.00 0.00 0.00 4.58
458 473 0.846693 ATTCCCCACTATGACCAGCC 59.153 55.000 0.00 0.00 0.00 4.85
459 474 3.136626 AGTTATTCCCCACTATGACCAGC 59.863 47.826 0.00 0.00 0.00 4.85
460 475 5.373812 AAGTTATTCCCCACTATGACCAG 57.626 43.478 0.00 0.00 0.00 4.00
461 476 6.894735 TTAAGTTATTCCCCACTATGACCA 57.105 37.500 0.00 0.00 0.00 4.02
462 477 7.344134 AGTTTAAGTTATTCCCCACTATGACC 58.656 38.462 0.00 0.00 0.00 4.02
463 478 9.543783 CTAGTTTAAGTTATTCCCCACTATGAC 57.456 37.037 0.00 0.00 0.00 3.06
464 479 9.275572 ACTAGTTTAAGTTATTCCCCACTATGA 57.724 33.333 0.00 0.00 0.00 2.15
468 483 8.883302 TGTTACTAGTTTAAGTTATTCCCCACT 58.117 33.333 0.00 0.00 0.00 4.00
469 484 9.676861 ATGTTACTAGTTTAAGTTATTCCCCAC 57.323 33.333 0.00 0.00 0.00 4.61
508 523 8.871125 CCCACTATGAAGGTAGTAACATAGATT 58.129 37.037 16.37 0.00 42.41 2.40
509 524 8.011290 ACCCACTATGAAGGTAGTAACATAGAT 58.989 37.037 16.37 2.75 42.41 1.98
510 525 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
511 526 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
512 527 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
513 528 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
520 535 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
521 536 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
522 537 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
523 538 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
524 539 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
525 540 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
526 541 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
527 542 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
528 543 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
529 544 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
530 545 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
531 546 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
532 547 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
533 548 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
534 549 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
535 550 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
536 551 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
537 552 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
538 553 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
539 554 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
540 555 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
541 556 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
542 557 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
543 558 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
544 559 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
575 590 9.461312 TTCCAATGCATAATAAGTCTACAAAGT 57.539 29.630 0.00 0.00 0.00 2.66
578 593 8.682710 GGTTTCCAATGCATAATAAGTCTACAA 58.317 33.333 0.00 0.00 0.00 2.41
579 594 7.011950 CGGTTTCCAATGCATAATAAGTCTACA 59.988 37.037 0.00 0.00 0.00 2.74
580 595 7.352739 CGGTTTCCAATGCATAATAAGTCTAC 58.647 38.462 0.00 0.00 0.00 2.59
581 596 6.017440 GCGGTTTCCAATGCATAATAAGTCTA 60.017 38.462 0.00 0.00 0.00 2.59
582 597 5.221048 GCGGTTTCCAATGCATAATAAGTCT 60.221 40.000 0.00 0.00 0.00 3.24
583 598 4.976116 GCGGTTTCCAATGCATAATAAGTC 59.024 41.667 0.00 0.00 0.00 3.01
584 599 4.644685 AGCGGTTTCCAATGCATAATAAGT 59.355 37.500 0.00 0.00 0.00 2.24
585 600 5.186996 AGCGGTTTCCAATGCATAATAAG 57.813 39.130 0.00 0.00 0.00 1.73
586 601 6.264292 ACATAGCGGTTTCCAATGCATAATAA 59.736 34.615 0.00 0.00 0.00 1.40
587 602 5.767665 ACATAGCGGTTTCCAATGCATAATA 59.232 36.000 0.00 0.00 0.00 0.98
588 603 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
589 604 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
590 605 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
591 606 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
592 607 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
593 608 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
594 609 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
595 610 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
596 611 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
597 612 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
598 613 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
599 614 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
600 615 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
601 616 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
602 617 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
603 618 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
604 619 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
623 638 9.343539 GGAAAGAGGCAAATAGAGTAACATAAT 57.656 33.333 0.00 0.00 0.00 1.28
624 639 8.548877 AGGAAAGAGGCAAATAGAGTAACATAA 58.451 33.333 0.00 0.00 0.00 1.90
625 640 8.090788 AGGAAAGAGGCAAATAGAGTAACATA 57.909 34.615 0.00 0.00 0.00 2.29
626 641 6.963322 AGGAAAGAGGCAAATAGAGTAACAT 58.037 36.000 0.00 0.00 0.00 2.71
627 642 6.013725 TGAGGAAAGAGGCAAATAGAGTAACA 60.014 38.462 0.00 0.00 0.00 2.41
628 643 6.407202 TGAGGAAAGAGGCAAATAGAGTAAC 58.593 40.000 0.00 0.00 0.00 2.50
629 644 6.620877 TGAGGAAAGAGGCAAATAGAGTAA 57.379 37.500 0.00 0.00 0.00 2.24
630 645 6.814954 ATGAGGAAAGAGGCAAATAGAGTA 57.185 37.500 0.00 0.00 0.00 2.59
631 646 5.707066 ATGAGGAAAGAGGCAAATAGAGT 57.293 39.130 0.00 0.00 0.00 3.24
632 647 7.772757 AGTTAATGAGGAAAGAGGCAAATAGAG 59.227 37.037 0.00 0.00 0.00 2.43
633 648 7.633789 AGTTAATGAGGAAAGAGGCAAATAGA 58.366 34.615 0.00 0.00 0.00 1.98
634 649 7.872113 AGTTAATGAGGAAAGAGGCAAATAG 57.128 36.000 0.00 0.00 0.00 1.73
635 650 8.548877 AGTAGTTAATGAGGAAAGAGGCAAATA 58.451 33.333 0.00 0.00 0.00 1.40
636 651 7.406104 AGTAGTTAATGAGGAAAGAGGCAAAT 58.594 34.615 0.00 0.00 0.00 2.32
637 652 6.779860 AGTAGTTAATGAGGAAAGAGGCAAA 58.220 36.000 0.00 0.00 0.00 3.68
638 653 6.374417 AGTAGTTAATGAGGAAAGAGGCAA 57.626 37.500 0.00 0.00 0.00 4.52
639 654 6.374417 AAGTAGTTAATGAGGAAAGAGGCA 57.626 37.500 0.00 0.00 0.00 4.75
640 655 6.762187 GGTAAGTAGTTAATGAGGAAAGAGGC 59.238 42.308 0.00 0.00 0.00 4.70
641 656 7.764901 GTGGTAAGTAGTTAATGAGGAAAGAGG 59.235 40.741 0.00 0.00 0.00 3.69
642 657 8.311836 TGTGGTAAGTAGTTAATGAGGAAAGAG 58.688 37.037 0.00 0.00 0.00 2.85
643 658 8.197592 TGTGGTAAGTAGTTAATGAGGAAAGA 57.802 34.615 0.00 0.00 0.00 2.52
644 659 9.099454 GATGTGGTAAGTAGTTAATGAGGAAAG 57.901 37.037 0.00 0.00 0.00 2.62
645 660 8.598916 TGATGTGGTAAGTAGTTAATGAGGAAA 58.401 33.333 0.00 0.00 0.00 3.13
646 661 8.141298 TGATGTGGTAAGTAGTTAATGAGGAA 57.859 34.615 0.00 0.00 0.00 3.36
647 662 7.727578 TGATGTGGTAAGTAGTTAATGAGGA 57.272 36.000 0.00 0.00 0.00 3.71
648 663 8.204160 TGATGATGTGGTAAGTAGTTAATGAGG 58.796 37.037 0.00 0.00 0.00 3.86
649 664 9.770097 ATGATGATGTGGTAAGTAGTTAATGAG 57.230 33.333 0.00 0.00 0.00 2.90
655 670 8.028938 GCAAAAATGATGATGTGGTAAGTAGTT 58.971 33.333 0.00 0.00 0.00 2.24
656 671 7.394359 AGCAAAAATGATGATGTGGTAAGTAGT 59.606 33.333 0.00 0.00 0.00 2.73
657 672 7.765307 AGCAAAAATGATGATGTGGTAAGTAG 58.235 34.615 0.00 0.00 0.00 2.57
658 673 7.701539 AGCAAAAATGATGATGTGGTAAGTA 57.298 32.000 0.00 0.00 0.00 2.24
659 674 6.594788 AGCAAAAATGATGATGTGGTAAGT 57.405 33.333 0.00 0.00 0.00 2.24
660 675 9.027129 CATAAGCAAAAATGATGATGTGGTAAG 57.973 33.333 0.00 0.00 0.00 2.34
661 676 8.530311 ACATAAGCAAAAATGATGATGTGGTAA 58.470 29.630 0.00 0.00 0.00 2.85
662 677 7.975058 CACATAAGCAAAAATGATGATGTGGTA 59.025 33.333 14.08 0.00 39.34 3.25
663 678 6.814644 CACATAAGCAAAAATGATGATGTGGT 59.185 34.615 14.08 0.00 39.34 4.16
664 679 7.009815 GTCACATAAGCAAAAATGATGATGTGG 59.990 37.037 19.20 6.32 41.93 4.17
665 680 7.542824 TGTCACATAAGCAAAAATGATGATGTG 59.457 33.333 15.25 15.25 42.63 3.21
666 681 7.604549 TGTCACATAAGCAAAAATGATGATGT 58.395 30.769 0.00 0.00 0.00 3.06
667 682 8.642908 ATGTCACATAAGCAAAAATGATGATG 57.357 30.769 0.00 0.00 0.00 3.07
668 683 8.692710 AGATGTCACATAAGCAAAAATGATGAT 58.307 29.630 0.00 0.00 0.00 2.45
669 684 8.058667 AGATGTCACATAAGCAAAAATGATGA 57.941 30.769 0.00 0.00 0.00 2.92
670 685 9.961265 ATAGATGTCACATAAGCAAAAATGATG 57.039 29.630 0.00 0.00 0.00 3.07
671 686 9.961265 CATAGATGTCACATAAGCAAAAATGAT 57.039 29.630 0.00 0.00 0.00 2.45
672 687 8.959548 ACATAGATGTCACATAAGCAAAAATGA 58.040 29.630 0.00 0.00 35.87 2.57
673 688 9.577110 AACATAGATGTCACATAAGCAAAAATG 57.423 29.630 0.00 0.00 40.80 2.32
676 691 9.448438 AGTAACATAGATGTCACATAAGCAAAA 57.552 29.630 0.00 0.00 40.80 2.44
678 693 9.529325 GTAGTAACATAGATGTCACATAAGCAA 57.471 33.333 0.00 0.00 40.80 3.91
679 694 8.141909 GGTAGTAACATAGATGTCACATAAGCA 58.858 37.037 0.00 0.00 40.80 3.91
680 695 8.361139 AGGTAGTAACATAGATGTCACATAAGC 58.639 37.037 0.00 0.00 40.80 3.09
684 699 9.368416 ACATAGGTAGTAACATAGATGTCACAT 57.632 33.333 0.00 0.00 40.80 3.21
685 700 8.762481 ACATAGGTAGTAACATAGATGTCACA 57.238 34.615 0.00 0.00 40.80 3.58
691 706 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
692 707 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
693 708 8.701908 TGGGAGTAACATAGGTAGTAACATAG 57.298 38.462 0.00 0.00 0.00 2.23
694 709 9.664777 AATGGGAGTAACATAGGTAGTAACATA 57.335 33.333 0.00 0.00 0.00 2.29
695 710 8.562949 AATGGGAGTAACATAGGTAGTAACAT 57.437 34.615 0.00 0.00 0.00 2.71
696 711 7.983166 AATGGGAGTAACATAGGTAGTAACA 57.017 36.000 0.00 0.00 0.00 2.41
697 712 9.924650 CATAATGGGAGTAACATAGGTAGTAAC 57.075 37.037 0.00 0.00 0.00 2.50
698 713 9.886337 TCATAATGGGAGTAACATAGGTAGTAA 57.114 33.333 0.00 0.00 0.00 2.24
699 714 9.305555 GTCATAATGGGAGTAACATAGGTAGTA 57.694 37.037 0.00 0.00 0.00 1.82
700 715 7.234988 GGTCATAATGGGAGTAACATAGGTAGT 59.765 40.741 0.00 0.00 0.00 2.73
701 716 7.234782 TGGTCATAATGGGAGTAACATAGGTAG 59.765 40.741 0.00 0.00 0.00 3.18
702 717 7.077095 TGGTCATAATGGGAGTAACATAGGTA 58.923 38.462 0.00 0.00 0.00 3.08
703 718 5.908831 TGGTCATAATGGGAGTAACATAGGT 59.091 40.000 0.00 0.00 0.00 3.08
704 719 6.433847 TGGTCATAATGGGAGTAACATAGG 57.566 41.667 0.00 0.00 0.00 2.57
705 720 5.934625 GCTGGTCATAATGGGAGTAACATAG 59.065 44.000 0.00 0.00 0.00 2.23
706 721 5.221843 GGCTGGTCATAATGGGAGTAACATA 60.222 44.000 0.00 0.00 0.00 2.29
707 722 4.446311 GGCTGGTCATAATGGGAGTAACAT 60.446 45.833 0.00 0.00 0.00 2.71
708 723 3.118038 GGCTGGTCATAATGGGAGTAACA 60.118 47.826 0.00 0.00 0.00 2.41
709 724 3.136626 AGGCTGGTCATAATGGGAGTAAC 59.863 47.826 0.00 0.00 0.00 2.50
710 725 3.393687 AGGCTGGTCATAATGGGAGTAA 58.606 45.455 0.00 0.00 0.00 2.24
711 726 3.060479 AGGCTGGTCATAATGGGAGTA 57.940 47.619 0.00 0.00 0.00 2.59
712 727 1.898863 AGGCTGGTCATAATGGGAGT 58.101 50.000 0.00 0.00 0.00 3.85
713 728 3.496870 GGTAAGGCTGGTCATAATGGGAG 60.497 52.174 0.00 0.00 0.00 4.30
714 729 2.441750 GGTAAGGCTGGTCATAATGGGA 59.558 50.000 0.00 0.00 0.00 4.37
715 730 2.174639 TGGTAAGGCTGGTCATAATGGG 59.825 50.000 0.00 0.00 0.00 4.00
716 731 3.576078 TGGTAAGGCTGGTCATAATGG 57.424 47.619 0.00 0.00 0.00 3.16
717 732 5.394115 GGTTTTGGTAAGGCTGGTCATAATG 60.394 44.000 0.00 0.00 0.00 1.90
718 733 4.709886 GGTTTTGGTAAGGCTGGTCATAAT 59.290 41.667 0.00 0.00 0.00 1.28
719 734 4.083565 GGTTTTGGTAAGGCTGGTCATAA 58.916 43.478 0.00 0.00 0.00 1.90
720 735 3.692690 GGTTTTGGTAAGGCTGGTCATA 58.307 45.455 0.00 0.00 0.00 2.15
721 736 2.525368 GGTTTTGGTAAGGCTGGTCAT 58.475 47.619 0.00 0.00 0.00 3.06
722 737 1.816183 CGGTTTTGGTAAGGCTGGTCA 60.816 52.381 0.00 0.00 0.00 4.02
723 738 0.879090 CGGTTTTGGTAAGGCTGGTC 59.121 55.000 0.00 0.00 0.00 4.02
724 739 1.176619 GCGGTTTTGGTAAGGCTGGT 61.177 55.000 0.00 0.00 0.00 4.00
725 740 1.175983 TGCGGTTTTGGTAAGGCTGG 61.176 55.000 0.00 0.00 0.00 4.85
726 741 0.887933 ATGCGGTTTTGGTAAGGCTG 59.112 50.000 0.00 0.00 0.00 4.85
727 742 0.887933 CATGCGGTTTTGGTAAGGCT 59.112 50.000 0.00 0.00 0.00 4.58
728 743 0.735978 GCATGCGGTTTTGGTAAGGC 60.736 55.000 0.00 0.00 0.00 4.35
757 772 4.631247 TCTGCTGCTGCGGTTGCT 62.631 61.111 22.05 0.00 45.38 3.91
761 776 4.385405 GTCCTCTGCTGCTGCGGT 62.385 66.667 22.05 0.00 45.38 5.68
794 809 0.168348 CGTAGGGTGTGTGACGAGAG 59.832 60.000 0.00 0.00 37.50 3.20
795 810 0.250424 TCGTAGGGTGTGTGACGAGA 60.250 55.000 0.00 0.00 39.25 4.04
838 855 4.463879 CTGGCCTCCGGTCTGCTG 62.464 72.222 3.32 0.00 0.00 4.41
894 911 1.944709 CGGCTCGGGTTAAATTTAGGG 59.055 52.381 0.00 0.00 0.00 3.53
919 984 0.896940 AAAGGGAGACGCGTAGGTGA 60.897 55.000 13.97 0.00 0.00 4.02
1025 1134 0.661483 GTTTCGCTTTCTGCACTGCC 60.661 55.000 0.00 0.00 43.06 4.85
1053 1162 2.603776 ACCGGACTGGACTGGACC 60.604 66.667 9.46 0.00 42.00 4.46
1093 1202 1.457455 CCCTCTGCTCTCCTCTCCC 60.457 68.421 0.00 0.00 0.00 4.30
1100 1209 3.535962 CGCCTCCCCTCTGCTCTC 61.536 72.222 0.00 0.00 0.00 3.20
1251 1421 4.576374 ATACGGGGGAGGGGGAGC 62.576 72.222 0.00 0.00 0.00 4.70
1267 1437 1.922821 GGTGGTGGTGCCTATGGAT 59.077 57.895 0.00 0.00 38.35 3.41
1457 1684 4.394712 GTCCTCGCAGGGGGTGTG 62.395 72.222 2.86 0.00 35.59 3.82
1895 2122 8.397906 CCAAGATTTTTATCATAAGACGCTTCA 58.602 33.333 0.00 0.00 0.00 3.02
1901 2128 8.624776 CCCTCACCAAGATTTTTATCATAAGAC 58.375 37.037 0.00 0.00 0.00 3.01
1919 2146 0.707616 CCCAATTAACCCCCTCACCA 59.292 55.000 0.00 0.00 0.00 4.17
1937 2164 0.035725 CGTCCCCTGTTCCTAAACCC 60.036 60.000 0.00 0.00 34.28 4.11
1993 2220 8.930760 CCATTCCGAGTTCTCATAATAATTCTC 58.069 37.037 0.79 0.00 0.00 2.87
1994 2221 7.880195 CCCATTCCGAGTTCTCATAATAATTCT 59.120 37.037 0.79 0.00 0.00 2.40
1995 2222 7.878127 TCCCATTCCGAGTTCTCATAATAATTC 59.122 37.037 0.79 0.00 0.00 2.17
1996 2223 7.745717 TCCCATTCCGAGTTCTCATAATAATT 58.254 34.615 0.79 0.00 0.00 1.40
1997 2224 7.316393 TCCCATTCCGAGTTCTCATAATAAT 57.684 36.000 0.79 0.00 0.00 1.28
1998 2225 6.740944 TCCCATTCCGAGTTCTCATAATAA 57.259 37.500 0.79 0.00 0.00 1.40
1999 2226 6.935240 ATCCCATTCCGAGTTCTCATAATA 57.065 37.500 0.79 0.00 0.00 0.98
2010 2247 2.736400 GCAAAGCAAATCCCATTCCGAG 60.736 50.000 0.00 0.00 0.00 4.63
2068 2857 4.999939 GTTTGCGCACAAGGCCCG 63.000 66.667 11.12 0.00 40.31 6.13
2124 2913 7.999679 AGTGTGAAAAGTTGAATGAAATCTGA 58.000 30.769 0.00 0.00 0.00 3.27
2129 2918 7.156876 ACAGAGTGTGAAAAGTTGAATGAAA 57.843 32.000 0.00 0.00 0.00 2.69
2134 2923 5.640357 ACGTTACAGAGTGTGAAAAGTTGAA 59.360 36.000 0.00 0.00 0.00 2.69
2135 2924 5.172934 ACGTTACAGAGTGTGAAAAGTTGA 58.827 37.500 0.00 0.00 0.00 3.18
2136 2925 5.464965 ACGTTACAGAGTGTGAAAAGTTG 57.535 39.130 0.00 0.00 0.00 3.16
2148 2938 1.202582 ACAGCTGGCTACGTTACAGAG 59.797 52.381 19.93 10.02 34.21 3.35
2168 2958 4.665833 AACAGTGTGCTACAGTTCACTA 57.334 40.909 0.00 0.00 38.79 2.74
2169 2959 3.543680 AACAGTGTGCTACAGTTCACT 57.456 42.857 0.00 0.00 41.02 3.41
2170 2960 5.924475 ATAAACAGTGTGCTACAGTTCAC 57.076 39.130 0.00 0.08 37.95 3.18
2171 2961 7.713507 ACTTTATAAACAGTGTGCTACAGTTCA 59.286 33.333 0.00 0.00 37.95 3.18
2172 2962 8.084590 ACTTTATAAACAGTGTGCTACAGTTC 57.915 34.615 0.00 0.00 37.95 3.01
2173 2963 9.720769 ATACTTTATAAACAGTGTGCTACAGTT 57.279 29.630 0.00 0.00 40.27 3.16
2174 2964 9.367444 GATACTTTATAAACAGTGTGCTACAGT 57.633 33.333 0.00 0.86 30.48 3.55
2175 2965 8.818057 GGATACTTTATAAACAGTGTGCTACAG 58.182 37.037 0.00 0.00 0.00 2.74
2176 2966 7.767198 GGGATACTTTATAAACAGTGTGCTACA 59.233 37.037 0.00 0.00 0.00 2.74
2177 2967 7.767198 TGGGATACTTTATAAACAGTGTGCTAC 59.233 37.037 0.00 0.00 0.00 3.58
2178 2968 7.767198 GTGGGATACTTTATAAACAGTGTGCTA 59.233 37.037 0.00 0.00 0.00 3.49
2179 2969 6.598064 GTGGGATACTTTATAAACAGTGTGCT 59.402 38.462 0.00 0.00 0.00 4.40
2180 2970 6.456449 CGTGGGATACTTTATAAACAGTGTGC 60.456 42.308 0.00 0.00 0.00 4.57
2181 2971 6.592607 ACGTGGGATACTTTATAAACAGTGTG 59.407 38.462 0.00 0.00 0.00 3.82
2182 2972 6.592607 CACGTGGGATACTTTATAAACAGTGT 59.407 38.462 7.95 0.00 0.00 3.55
2183 2973 6.456449 GCACGTGGGATACTTTATAAACAGTG 60.456 42.308 18.88 0.00 0.00 3.66
2184 2974 5.583457 GCACGTGGGATACTTTATAAACAGT 59.417 40.000 18.88 0.00 0.00 3.55
2185 2975 5.583061 TGCACGTGGGATACTTTATAAACAG 59.417 40.000 18.88 0.00 0.00 3.16
2186 2976 5.352016 GTGCACGTGGGATACTTTATAAACA 59.648 40.000 18.88 0.00 0.00 2.83
2187 2977 5.352016 TGTGCACGTGGGATACTTTATAAAC 59.648 40.000 18.88 0.00 0.00 2.01
2188 2978 5.489249 TGTGCACGTGGGATACTTTATAAA 58.511 37.500 18.88 0.00 0.00 1.40
2189 2979 5.087391 TGTGCACGTGGGATACTTTATAA 57.913 39.130 18.88 0.00 0.00 0.98
2190 2980 4.689071 CTGTGCACGTGGGATACTTTATA 58.311 43.478 18.88 0.00 0.00 0.98
2191 2981 3.531538 CTGTGCACGTGGGATACTTTAT 58.468 45.455 18.88 0.00 0.00 1.40
2265 3055 4.054671 GCTAGTGAATTCCGAGAATCTGG 58.945 47.826 2.27 0.00 0.00 3.86
2280 3070 1.544246 ACACAGCACATACGCTAGTGA 59.456 47.619 10.99 0.00 41.38 3.41
2402 3267 4.686191 ACAAACAGATCAAAATGCCCAA 57.314 36.364 0.00 0.00 0.00 4.12
2406 3271 4.319694 GGCCAAACAAACAGATCAAAATGC 60.320 41.667 0.00 0.00 0.00 3.56
2435 3300 1.753930 TTCGGATGCATGCAATCAGT 58.246 45.000 26.68 7.61 0.00 3.41
2445 3310 3.320541 ACTGAAAACCAAATTCGGATGCA 59.679 39.130 0.00 0.00 36.79 3.96
2450 3322 6.067263 TCAGTAACTGAAAACCAAATTCGG 57.933 37.500 0.00 0.00 37.57 4.30
2515 3387 0.981183 ACAACAGATACGCTCCCCAA 59.019 50.000 0.00 0.00 0.00 4.12
2647 3519 2.808315 CGCGCAGGATAGGTGAGT 59.192 61.111 8.75 0.00 0.00 3.41
2727 3599 2.519541 TCGAGGGGCGATCAGAGG 60.520 66.667 0.00 0.00 45.59 3.69
2743 3615 1.936547 GATGCCTGATGGTTCGAGTTC 59.063 52.381 0.00 0.00 35.27 3.01
2744 3616 1.740380 CGATGCCTGATGGTTCGAGTT 60.740 52.381 0.00 0.00 40.80 3.01
2746 3618 0.103026 TCGATGCCTGATGGTTCGAG 59.897 55.000 7.70 0.00 41.55 4.04
2747 3619 0.752658 ATCGATGCCTGATGGTTCGA 59.247 50.000 0.00 12.07 46.12 3.71
2768 3658 4.082026 AGCACATTAAGGCCACTGAAAATC 60.082 41.667 5.01 0.00 0.00 2.17
2791 3683 1.003476 ATCTGCGTGTCCATGTGCA 60.003 52.632 0.00 0.00 35.75 4.57
2792 3684 1.426621 CATCTGCGTGTCCATGTGC 59.573 57.895 0.00 0.00 0.00 4.57
2812 3704 2.100197 TCCACCTCGATCAAGTACAGG 58.900 52.381 0.00 0.00 0.00 4.00
2922 3814 2.811317 GCTCTGCGTTCAGGTCCG 60.811 66.667 0.00 0.00 40.69 4.79
3157 4049 2.513204 CATGGCCGTGAGCTGGAG 60.513 66.667 21.08 0.00 43.05 3.86
3176 4068 4.876679 TCTTCTCGTACCTACAGTCATGAG 59.123 45.833 0.00 0.00 0.00 2.90
3589 4481 1.804151 GAGCCATGTTTGCAGTACGAA 59.196 47.619 0.00 0.00 0.00 3.85
3593 4485 1.630369 AGAGGAGCCATGTTTGCAGTA 59.370 47.619 0.00 0.00 0.00 2.74
3635 4528 1.550976 GGTCACACACCCCAACAAAAA 59.449 47.619 0.00 0.00 39.69 1.94
3636 4529 1.187087 GGTCACACACCCCAACAAAA 58.813 50.000 0.00 0.00 39.69 2.44
3652 4549 2.622942 CCTGCAGAGATACAGAGAGGTC 59.377 54.545 17.39 0.00 35.90 3.85
3715 4615 2.489329 ACTGAAAACCGAATCAGCATGG 59.511 45.455 2.86 0.00 45.50 3.66
3727 4627 4.448210 TGTCCTTGTACAGACTGAAAACC 58.552 43.478 10.08 0.00 34.02 3.27
3818 4718 4.649088 ACCAGGTGAAAACAGCTTTTAC 57.351 40.909 0.00 0.00 33.75 2.01
3820 4720 4.464597 TGTAACCAGGTGAAAACAGCTTTT 59.535 37.500 0.00 0.00 31.91 2.27
3821 4721 4.020543 TGTAACCAGGTGAAAACAGCTTT 58.979 39.130 0.00 0.00 0.00 3.51
3870 4772 0.320683 CGTCCATCTCACACCTTGCA 60.321 55.000 0.00 0.00 0.00 4.08
3889 4791 0.396139 TCCATTTCCAGCAGGATGGC 60.396 55.000 11.93 0.00 45.26 4.40
3912 4814 3.237741 CCCTCCGGCCTCAGGATC 61.238 72.222 16.79 0.00 37.13 3.36
4101 5003 2.165437 TCATGCTTTTATTTCGGGGTGC 59.835 45.455 0.00 0.00 0.00 5.01
4103 5005 3.963129 TCTCATGCTTTTATTTCGGGGT 58.037 40.909 0.00 0.00 0.00 4.95
4113 5015 7.540055 GTCGATTTTCTCATTTCTCATGCTTTT 59.460 33.333 0.00 0.00 0.00 2.27
4136 5038 1.871408 GCATCTGCCCAGTATCTGTCG 60.871 57.143 0.00 0.00 34.31 4.35
4156 5058 2.040544 GGAAGCCGGATGTGTGTGG 61.041 63.158 5.05 0.00 0.00 4.17
4208 5110 5.212194 CAAACGAACTACCCAAACAAGATG 58.788 41.667 0.00 0.00 0.00 2.90
4242 5144 2.945668 GGGCATGTCTCCACTATGTTTC 59.054 50.000 0.00 0.00 0.00 2.78
4324 5299 0.890683 CTCTGTCAACCCCATTTGGC 59.109 55.000 0.00 0.00 0.00 4.52
4325 5300 2.584835 TCTCTGTCAACCCCATTTGG 57.415 50.000 0.00 0.00 0.00 3.28
4326 5301 4.523943 TGAAATCTCTGTCAACCCCATTTG 59.476 41.667 0.00 0.00 0.00 2.32
4327 5302 4.739793 TGAAATCTCTGTCAACCCCATTT 58.260 39.130 0.00 0.00 0.00 2.32
4336 5311 7.420002 CAAGAAACACAATGAAATCTCTGTCA 58.580 34.615 0.00 0.00 0.00 3.58
4361 5336 5.212194 CACATAACCAACACTTTGTACAGC 58.788 41.667 0.00 0.00 0.00 4.40
4372 5347 4.105057 AGGGGAACTTACACATAACCAACA 59.895 41.667 0.00 0.00 0.00 3.33
4407 5382 2.436173 GGGTCTGATTCAGTAAGGAGGG 59.564 54.545 13.23 0.00 32.61 4.30
4409 5384 4.467795 TCTTGGGTCTGATTCAGTAAGGAG 59.532 45.833 13.23 7.82 32.61 3.69
4447 5422 5.041191 AGAGCCAAATCACCGAAGATAAT 57.959 39.130 0.00 0.00 0.00 1.28
4448 5423 4.487714 AGAGCCAAATCACCGAAGATAA 57.512 40.909 0.00 0.00 0.00 1.75
4449 5424 4.487714 AAGAGCCAAATCACCGAAGATA 57.512 40.909 0.00 0.00 0.00 1.98
4450 5425 3.356529 AAGAGCCAAATCACCGAAGAT 57.643 42.857 0.00 0.00 0.00 2.40
4478 5453 2.277084 CCAAATTACTCCCGTCGGAAG 58.723 52.381 14.39 3.69 37.86 3.46
4479 5454 1.624813 ACCAAATTACTCCCGTCGGAA 59.375 47.619 14.39 0.00 37.86 4.30
4481 5456 2.004733 GAACCAAATTACTCCCGTCGG 58.995 52.381 3.60 3.60 0.00 4.79
4482 5457 2.004733 GGAACCAAATTACTCCCGTCG 58.995 52.381 0.00 0.00 0.00 5.12
4502 5478 0.303493 CGTCACGGTCAAACCAGTTG 59.697 55.000 0.00 0.00 38.47 3.16
4520 5496 2.484742 AGGTTAGCCTGGTTTTACCG 57.515 50.000 0.00 0.00 45.05 4.02
4524 5500 3.154710 GCAGTTAGGTTAGCCTGGTTTT 58.845 45.455 8.65 0.00 46.47 2.43
4559 5535 3.000080 GCGGCTGTTTCACGACGAG 62.000 63.158 0.00 0.00 0.00 4.18
4620 5596 1.669115 TCAAGTTCAGAGCGGCAGC 60.669 57.895 0.00 0.00 45.58 5.25
4638 5614 3.252554 TGGAAGGTTAAAGGCAATGGT 57.747 42.857 0.00 0.00 0.00 3.55
4642 5618 3.244387 GGCAAATGGAAGGTTAAAGGCAA 60.244 43.478 0.00 0.00 0.00 4.52
4643 5619 2.301583 GGCAAATGGAAGGTTAAAGGCA 59.698 45.455 0.00 0.00 0.00 4.75
4644 5620 2.567169 AGGCAAATGGAAGGTTAAAGGC 59.433 45.455 0.00 0.00 0.00 4.35
4645 5621 4.890158 AAGGCAAATGGAAGGTTAAAGG 57.110 40.909 0.00 0.00 0.00 3.11
4646 5622 5.696270 GTCAAAGGCAAATGGAAGGTTAAAG 59.304 40.000 0.00 0.00 0.00 1.85
4647 5623 5.454045 GGTCAAAGGCAAATGGAAGGTTAAA 60.454 40.000 0.00 0.00 0.00 1.52
4648 5624 4.039852 GGTCAAAGGCAAATGGAAGGTTAA 59.960 41.667 0.00 0.00 0.00 2.01
4649 5625 3.576550 GGTCAAAGGCAAATGGAAGGTTA 59.423 43.478 0.00 0.00 0.00 2.85
4650 5626 2.368548 GGTCAAAGGCAAATGGAAGGTT 59.631 45.455 0.00 0.00 0.00 3.50
4651 5627 1.970640 GGTCAAAGGCAAATGGAAGGT 59.029 47.619 0.00 0.00 0.00 3.50
4652 5628 2.250924 AGGTCAAAGGCAAATGGAAGG 58.749 47.619 0.00 0.00 0.00 3.46
4653 5629 3.306294 GGAAGGTCAAAGGCAAATGGAAG 60.306 47.826 0.00 0.00 0.00 3.46
4654 5630 2.632512 GGAAGGTCAAAGGCAAATGGAA 59.367 45.455 0.00 0.00 0.00 3.53
4655 5631 2.247358 GGAAGGTCAAAGGCAAATGGA 58.753 47.619 0.00 0.00 0.00 3.41
4656 5632 1.969923 TGGAAGGTCAAAGGCAAATGG 59.030 47.619 0.00 0.00 0.00 3.16
4657 5633 3.512724 AGATGGAAGGTCAAAGGCAAATG 59.487 43.478 0.00 0.00 0.00 2.32
4658 5634 3.512724 CAGATGGAAGGTCAAAGGCAAAT 59.487 43.478 0.00 0.00 0.00 2.32
4659 5635 2.892852 CAGATGGAAGGTCAAAGGCAAA 59.107 45.455 0.00 0.00 0.00 3.68
4701 5678 0.533491 AGCTACGGTTGCATTCGGTA 59.467 50.000 16.41 10.44 0.00 4.02
4741 5719 7.025963 CAGGCTTATGCTGTAAAGAAAGAAAG 58.974 38.462 0.13 0.00 39.59 2.62
4745 5723 5.886960 ACAGGCTTATGCTGTAAAGAAAG 57.113 39.130 0.13 0.00 39.59 2.62
4746 5724 6.648879 AAACAGGCTTATGCTGTAAAGAAA 57.351 33.333 0.13 0.00 39.59 2.52
4747 5725 6.648879 AAAACAGGCTTATGCTGTAAAGAA 57.351 33.333 0.13 0.00 39.59 2.52
4748 5726 6.264292 TGAAAAACAGGCTTATGCTGTAAAGA 59.736 34.615 0.13 0.00 39.59 2.52
4749 5727 6.446318 TGAAAAACAGGCTTATGCTGTAAAG 58.554 36.000 0.13 0.00 39.59 1.85
4778 5756 5.106830 CGGTAATTGTTAGCTCGTCCTTTTT 60.107 40.000 0.00 0.00 0.00 1.94
4785 5763 5.511234 AGTATCGGTAATTGTTAGCTCGT 57.489 39.130 0.00 0.00 0.00 4.18
4872 5851 3.991051 AGCACCGACCCTGACGTG 61.991 66.667 0.00 0.00 0.00 4.49
4973 5968 2.756207 TGGCATGACATGGACAGATTTG 59.244 45.455 17.03 0.00 0.00 2.32
4984 5979 4.194640 GACAGAACAGTATGGCATGACAT 58.805 43.478 20.10 20.10 43.62 3.06
4990 5985 1.555075 GGAGGACAGAACAGTATGGCA 59.445 52.381 0.00 0.00 43.62 4.92
5010 6005 3.300590 GCAAAACAAAACGTGTCTCTGTG 59.699 43.478 0.00 0.00 40.60 3.66
5100 6118 5.734311 GCATGTACGTACTATGCGATTTTT 58.266 37.500 29.66 3.30 37.97 1.94
5101 6119 5.324739 GCATGTACGTACTATGCGATTTT 57.675 39.130 29.66 5.82 37.97 1.82
5102 6120 4.966850 GCATGTACGTACTATGCGATTT 57.033 40.909 29.66 6.95 37.97 2.17
5107 6125 5.104562 TGAGTAGCATGTACGTACTATGC 57.895 43.478 32.73 32.73 45.64 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.