Multiple sequence alignment - TraesCS2A01G399800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G399800 chr2A 100.000 2546 0 0 1 2546 652861723 652864268 0.000000e+00 4702
1 TraesCS2A01G399800 chr3D 90.762 801 69 5 1749 2546 485061125 485060327 0.000000e+00 1064
2 TraesCS2A01G399800 chr3D 83.001 1053 162 7 655 1704 485062160 485061122 0.000000e+00 937
3 TraesCS2A01G399800 chr3D 78.468 966 191 15 652 1609 510333779 510334735 1.290000e-172 616
4 TraesCS2A01G399800 chr5D 78.912 1508 274 33 347 1841 530869703 530868227 0.000000e+00 983
5 TraesCS2A01G399800 chr5D 75.953 341 74 6 2199 2535 53917274 53917610 4.360000e-38 169
6 TraesCS2A01G399800 chr4D 78.384 1027 200 17 652 1665 30426448 30427465 0.000000e+00 647
7 TraesCS2A01G399800 chr4D 77.756 1025 205 20 652 1665 30445414 30446426 2.170000e-170 608
8 TraesCS2A01G399800 chr1D 78.191 752 148 14 866 1609 418513538 418512795 1.380000e-127 466
9 TraesCS2A01G399800 chr7A 83.226 310 52 0 2201 2510 693974771 693975080 4.150000e-73 285
10 TraesCS2A01G399800 chr3B 79.459 370 66 10 2182 2546 68955667 68955303 1.170000e-63 254
11 TraesCS2A01G399800 chr2D 82.381 210 30 5 128 337 508731073 508731275 2.600000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G399800 chr2A 652861723 652864268 2545 False 4702.0 4702 100.0000 1 2546 1 chr2A.!!$F1 2545
1 TraesCS2A01G399800 chr3D 485060327 485062160 1833 True 1000.5 1064 86.8815 655 2546 2 chr3D.!!$R1 1891
2 TraesCS2A01G399800 chr3D 510333779 510334735 956 False 616.0 616 78.4680 652 1609 1 chr3D.!!$F1 957
3 TraesCS2A01G399800 chr5D 530868227 530869703 1476 True 983.0 983 78.9120 347 1841 1 chr5D.!!$R1 1494
4 TraesCS2A01G399800 chr4D 30426448 30427465 1017 False 647.0 647 78.3840 652 1665 1 chr4D.!!$F1 1013
5 TraesCS2A01G399800 chr4D 30445414 30446426 1012 False 608.0 608 77.7560 652 1665 1 chr4D.!!$F2 1013
6 TraesCS2A01G399800 chr1D 418512795 418513538 743 True 466.0 466 78.1910 866 1609 1 chr1D.!!$R1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.038343 CGGGGTGCAGTTTTCCAATG 60.038 55.0 0.0 0.0 0.0 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1576 1591 0.107165 GGCCCATCACTACCTTGTCC 60.107 60.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.981859 GGTCAAAATCCGAGCTAGGA 57.018 50.000 18.60 18.60 45.54 2.94
21 22 2.827652 GGTCAAAATCCGAGCTAGGAG 58.172 52.381 20.81 7.55 44.55 3.69
22 23 2.205911 GTCAAAATCCGAGCTAGGAGC 58.794 52.381 20.81 3.69 44.55 4.70
31 32 2.802106 GCTAGGAGCGAGCGAACT 59.198 61.111 0.00 0.00 0.00 3.01
32 33 2.023318 GCTAGGAGCGAGCGAACTA 58.977 57.895 0.00 0.00 0.00 2.24
33 34 0.381089 GCTAGGAGCGAGCGAACTAA 59.619 55.000 0.00 0.00 0.00 2.24
34 35 1.202268 GCTAGGAGCGAGCGAACTAAA 60.202 52.381 0.00 0.00 0.00 1.85
35 36 2.734492 GCTAGGAGCGAGCGAACTAAAA 60.734 50.000 0.00 0.00 0.00 1.52
36 37 1.997669 AGGAGCGAGCGAACTAAAAG 58.002 50.000 0.00 0.00 0.00 2.27
37 38 1.544691 AGGAGCGAGCGAACTAAAAGA 59.455 47.619 0.00 0.00 0.00 2.52
38 39 2.029290 AGGAGCGAGCGAACTAAAAGAA 60.029 45.455 0.00 0.00 0.00 2.52
39 40 2.735134 GGAGCGAGCGAACTAAAAGAAA 59.265 45.455 0.00 0.00 0.00 2.52
40 41 3.185797 GGAGCGAGCGAACTAAAAGAAAA 59.814 43.478 0.00 0.00 0.00 2.29
41 42 4.319261 GGAGCGAGCGAACTAAAAGAAAAA 60.319 41.667 0.00 0.00 0.00 1.94
59 60 1.663695 AAATGGACGGGCTCAATACG 58.336 50.000 0.00 0.00 0.00 3.06
60 61 0.539986 AATGGACGGGCTCAATACGT 59.460 50.000 0.00 0.00 44.35 3.57
61 62 1.405872 ATGGACGGGCTCAATACGTA 58.594 50.000 0.00 0.00 41.40 3.57
62 63 0.457035 TGGACGGGCTCAATACGTAC 59.543 55.000 0.00 0.00 41.40 3.67
63 64 0.457035 GGACGGGCTCAATACGTACA 59.543 55.000 0.00 0.00 40.96 2.90
64 65 1.068127 GGACGGGCTCAATACGTACAT 59.932 52.381 0.00 0.00 40.96 2.29
65 66 2.124903 GACGGGCTCAATACGTACATG 58.875 52.381 0.00 0.04 41.40 3.21
66 67 1.752498 ACGGGCTCAATACGTACATGA 59.248 47.619 0.00 11.24 39.30 3.07
67 68 2.223735 ACGGGCTCAATACGTACATGAG 60.224 50.000 25.23 25.23 42.70 2.90
68 69 2.755650 GGGCTCAATACGTACATGAGG 58.244 52.381 28.07 16.90 40.68 3.86
70 71 3.099267 GCTCAATACGTACATGAGGCT 57.901 47.619 28.07 0.00 40.68 4.58
71 72 3.053455 GCTCAATACGTACATGAGGCTC 58.947 50.000 28.07 7.79 40.68 4.70
72 73 3.243569 GCTCAATACGTACATGAGGCTCT 60.244 47.826 28.07 0.00 40.68 4.09
73 74 4.023107 GCTCAATACGTACATGAGGCTCTA 60.023 45.833 28.07 2.46 40.68 2.43
74 75 5.690997 TCAATACGTACATGAGGCTCTAG 57.309 43.478 16.72 10.43 0.00 2.43
75 76 4.519350 TCAATACGTACATGAGGCTCTAGG 59.481 45.833 16.72 8.09 0.00 3.02
76 77 1.693627 ACGTACATGAGGCTCTAGGG 58.306 55.000 16.72 5.01 0.00 3.53
77 78 0.962489 CGTACATGAGGCTCTAGGGG 59.038 60.000 16.72 3.24 0.00 4.79
78 79 1.478837 CGTACATGAGGCTCTAGGGGA 60.479 57.143 16.72 0.00 0.00 4.81
79 80 2.243810 GTACATGAGGCTCTAGGGGAG 58.756 57.143 16.72 0.51 44.49 4.30
80 81 0.105246 ACATGAGGCTCTAGGGGAGG 60.105 60.000 16.72 0.00 42.08 4.30
81 82 0.835543 CATGAGGCTCTAGGGGAGGG 60.836 65.000 16.72 0.00 42.08 4.30
82 83 2.042279 ATGAGGCTCTAGGGGAGGGG 62.042 65.000 16.72 0.00 42.08 4.79
83 84 2.288847 AGGCTCTAGGGGAGGGGA 60.289 66.667 0.00 0.00 42.08 4.81
84 85 2.202899 GGCTCTAGGGGAGGGGAG 59.797 72.222 0.00 0.00 42.08 4.30
85 86 2.525629 GCTCTAGGGGAGGGGAGC 60.526 72.222 0.00 0.00 43.07 4.70
86 87 3.028683 CTCTAGGGGAGGGGAGCA 58.971 66.667 0.00 0.00 38.35 4.26
87 88 1.551358 CTCTAGGGGAGGGGAGCAT 59.449 63.158 0.00 0.00 38.35 3.79
88 89 0.835543 CTCTAGGGGAGGGGAGCATG 60.836 65.000 0.00 0.00 38.35 4.06
89 90 2.448542 TAGGGGAGGGGAGCATGC 60.449 66.667 10.51 10.51 0.00 4.06
90 91 3.346035 TAGGGGAGGGGAGCATGCA 62.346 63.158 21.98 0.00 0.00 3.96
91 92 2.642974 TAGGGGAGGGGAGCATGCAT 62.643 60.000 21.98 4.75 0.00 3.96
92 93 2.114838 GGGAGGGGAGCATGCATC 59.885 66.667 21.98 13.95 0.00 3.91
93 94 2.459086 GGGAGGGGAGCATGCATCT 61.459 63.158 21.98 10.95 0.00 2.90
94 95 1.535685 GGAGGGGAGCATGCATCTT 59.464 57.895 21.98 4.82 0.00 2.40
95 96 0.822532 GGAGGGGAGCATGCATCTTG 60.823 60.000 21.98 0.00 0.00 3.02
96 97 1.453762 GAGGGGAGCATGCATCTTGC 61.454 60.000 21.98 3.78 45.29 4.01
132 133 5.678132 TTTTTGAGTAACTTAGTTCCCGC 57.322 39.130 0.00 0.00 0.00 6.13
133 134 4.339872 TTTGAGTAACTTAGTTCCCGCA 57.660 40.909 0.00 0.00 0.00 5.69
134 135 3.587797 TGAGTAACTTAGTTCCCGCAG 57.412 47.619 0.00 0.00 0.00 5.18
135 136 2.895404 TGAGTAACTTAGTTCCCGCAGT 59.105 45.455 0.00 0.00 0.00 4.40
136 137 3.057033 TGAGTAACTTAGTTCCCGCAGTC 60.057 47.826 0.00 0.00 0.00 3.51
137 138 2.094854 AGTAACTTAGTTCCCGCAGTCG 60.095 50.000 0.00 0.00 0.00 4.18
138 139 0.669625 AACTTAGTTCCCGCAGTCGC 60.670 55.000 0.00 0.00 0.00 5.19
139 140 1.080093 CTTAGTTCCCGCAGTCGCA 60.080 57.895 0.00 0.00 38.40 5.10
140 141 1.078759 CTTAGTTCCCGCAGTCGCAG 61.079 60.000 0.00 0.00 38.40 5.18
141 142 1.529152 TTAGTTCCCGCAGTCGCAGA 61.529 55.000 0.00 0.00 38.40 4.26
142 143 1.934220 TAGTTCCCGCAGTCGCAGAG 61.934 60.000 0.00 0.00 36.95 3.35
143 144 2.989253 TTCCCGCAGTCGCAGAGA 60.989 61.111 0.00 0.00 36.95 3.10
144 145 2.570284 TTCCCGCAGTCGCAGAGAA 61.570 57.895 0.00 0.00 36.95 2.87
145 146 2.765250 TTCCCGCAGTCGCAGAGAAC 62.765 60.000 0.00 0.00 36.95 3.01
146 147 2.811317 CCGCAGTCGCAGAGAACC 60.811 66.667 0.00 0.00 36.95 3.62
147 148 2.259818 CGCAGTCGCAGAGAACCT 59.740 61.111 0.00 0.00 36.95 3.50
148 149 1.506718 CGCAGTCGCAGAGAACCTA 59.493 57.895 0.00 0.00 36.95 3.08
149 150 0.524392 CGCAGTCGCAGAGAACCTAG 60.524 60.000 0.00 0.00 36.95 3.02
150 151 0.179124 GCAGTCGCAGAGAACCTAGG 60.179 60.000 7.41 7.41 36.95 3.02
151 152 0.179124 CAGTCGCAGAGAACCTAGGC 60.179 60.000 9.30 0.00 36.95 3.93
152 153 0.612174 AGTCGCAGAGAACCTAGGCA 60.612 55.000 9.30 0.00 36.95 4.75
153 154 0.246635 GTCGCAGAGAACCTAGGCAA 59.753 55.000 9.30 0.00 36.95 4.52
154 155 1.134670 GTCGCAGAGAACCTAGGCAAT 60.135 52.381 9.30 0.00 36.95 3.56
155 156 1.134699 TCGCAGAGAACCTAGGCAATG 60.135 52.381 9.30 2.15 0.00 2.82
156 157 1.134699 CGCAGAGAACCTAGGCAATGA 60.135 52.381 9.30 0.00 0.00 2.57
157 158 2.559440 GCAGAGAACCTAGGCAATGAG 58.441 52.381 9.30 0.00 0.00 2.90
158 159 2.559440 CAGAGAACCTAGGCAATGAGC 58.441 52.381 9.30 0.00 44.65 4.26
169 170 2.573941 GCAATGAGCCCATCACTTTC 57.426 50.000 0.00 0.00 41.91 2.62
170 171 2.097825 GCAATGAGCCCATCACTTTCT 58.902 47.619 0.00 0.00 41.91 2.52
171 172 2.494870 GCAATGAGCCCATCACTTTCTT 59.505 45.455 0.00 0.00 41.91 2.52
172 173 3.675228 GCAATGAGCCCATCACTTTCTTG 60.675 47.826 0.00 0.00 41.91 3.02
173 174 3.726557 ATGAGCCCATCACTTTCTTGA 57.273 42.857 0.00 0.00 41.91 3.02
174 175 3.063510 TGAGCCCATCACTTTCTTGAG 57.936 47.619 0.00 0.00 31.12 3.02
175 176 2.290514 TGAGCCCATCACTTTCTTGAGG 60.291 50.000 0.00 0.00 31.12 3.86
176 177 0.813821 GCCCATCACTTTCTTGAGGC 59.186 55.000 0.00 0.00 31.71 4.70
177 178 1.615384 GCCCATCACTTTCTTGAGGCT 60.615 52.381 0.00 0.00 35.11 4.58
178 179 2.800250 CCCATCACTTTCTTGAGGCTT 58.200 47.619 0.00 0.00 0.00 4.35
179 180 3.160269 CCCATCACTTTCTTGAGGCTTT 58.840 45.455 0.00 0.00 0.00 3.51
180 181 3.192212 CCCATCACTTTCTTGAGGCTTTC 59.808 47.826 0.00 0.00 0.00 2.62
181 182 3.192212 CCATCACTTTCTTGAGGCTTTCC 59.808 47.826 0.00 0.00 0.00 3.13
183 184 3.480470 TCACTTTCTTGAGGCTTTCCTG 58.520 45.455 0.00 0.00 44.46 3.86
184 185 3.117888 TCACTTTCTTGAGGCTTTCCTGT 60.118 43.478 0.00 0.00 44.46 4.00
185 186 3.004106 CACTTTCTTGAGGCTTTCCTGTG 59.996 47.826 0.00 0.00 44.46 3.66
186 187 3.117888 ACTTTCTTGAGGCTTTCCTGTGA 60.118 43.478 0.00 0.00 44.46 3.58
187 188 3.576078 TTCTTGAGGCTTTCCTGTGAA 57.424 42.857 0.00 0.00 44.46 3.18
188 189 3.795688 TCTTGAGGCTTTCCTGTGAAT 57.204 42.857 0.00 0.00 44.46 2.57
189 190 4.908601 TCTTGAGGCTTTCCTGTGAATA 57.091 40.909 0.00 0.00 44.46 1.75
190 191 5.241403 TCTTGAGGCTTTCCTGTGAATAA 57.759 39.130 0.00 0.00 44.46 1.40
191 192 5.630121 TCTTGAGGCTTTCCTGTGAATAAA 58.370 37.500 0.00 0.00 44.46 1.40
192 193 6.068010 TCTTGAGGCTTTCCTGTGAATAAAA 58.932 36.000 0.00 0.00 44.46 1.52
193 194 6.721208 TCTTGAGGCTTTCCTGTGAATAAAAT 59.279 34.615 0.00 0.00 44.46 1.82
194 195 6.916360 TGAGGCTTTCCTGTGAATAAAATT 57.084 33.333 0.00 0.00 44.46 1.82
195 196 6.690530 TGAGGCTTTCCTGTGAATAAAATTG 58.309 36.000 0.00 0.00 44.46 2.32
196 197 6.041423 AGGCTTTCCTGTGAATAAAATTGG 57.959 37.500 0.00 0.00 42.34 3.16
197 198 5.046376 AGGCTTTCCTGTGAATAAAATTGGG 60.046 40.000 0.00 0.00 42.34 4.12
198 199 4.631377 GCTTTCCTGTGAATAAAATTGGGC 59.369 41.667 0.00 0.00 0.00 5.36
199 200 5.569428 GCTTTCCTGTGAATAAAATTGGGCT 60.569 40.000 0.00 0.00 0.00 5.19
200 201 5.404466 TTCCTGTGAATAAAATTGGGCTG 57.596 39.130 0.00 0.00 0.00 4.85
201 202 3.195396 TCCTGTGAATAAAATTGGGCTGC 59.805 43.478 0.00 0.00 0.00 5.25
202 203 3.055963 CCTGTGAATAAAATTGGGCTGCA 60.056 43.478 0.50 0.00 0.00 4.41
203 204 4.563168 CCTGTGAATAAAATTGGGCTGCAA 60.563 41.667 0.50 0.00 0.00 4.08
204 205 4.965814 TGTGAATAAAATTGGGCTGCAAA 58.034 34.783 0.50 0.00 0.00 3.68
205 206 5.371526 TGTGAATAAAATTGGGCTGCAAAA 58.628 33.333 0.50 0.00 0.00 2.44
206 207 5.469421 TGTGAATAAAATTGGGCTGCAAAAG 59.531 36.000 0.50 0.00 0.00 2.27
222 223 7.647907 CTGCAAAAGCAAGTTAATGAGATTT 57.352 32.000 0.00 0.00 0.00 2.17
223 224 7.642071 TGCAAAAGCAAGTTAATGAGATTTC 57.358 32.000 0.00 0.00 0.00 2.17
224 225 7.436118 TGCAAAAGCAAGTTAATGAGATTTCT 58.564 30.769 0.00 0.00 0.00 2.52
225 226 7.927629 TGCAAAAGCAAGTTAATGAGATTTCTT 59.072 29.630 0.00 0.00 0.00 2.52
226 227 8.219105 GCAAAAGCAAGTTAATGAGATTTCTTG 58.781 33.333 0.00 0.00 36.75 3.02
227 228 9.467258 CAAAAGCAAGTTAATGAGATTTCTTGA 57.533 29.630 0.00 0.00 36.27 3.02
228 229 9.688592 AAAAGCAAGTTAATGAGATTTCTTGAG 57.311 29.630 0.00 0.00 36.27 3.02
229 230 7.388460 AGCAAGTTAATGAGATTTCTTGAGG 57.612 36.000 0.00 0.00 36.27 3.86
230 231 6.032717 GCAAGTTAATGAGATTTCTTGAGGC 58.967 40.000 0.00 0.00 36.27 4.70
231 232 6.127786 GCAAGTTAATGAGATTTCTTGAGGCT 60.128 38.462 0.00 0.00 36.27 4.58
232 233 7.576477 GCAAGTTAATGAGATTTCTTGAGGCTT 60.576 37.037 0.00 0.00 36.27 4.35
233 234 8.302438 CAAGTTAATGAGATTTCTTGAGGCTTT 58.698 33.333 0.00 0.00 36.27 3.51
234 235 7.824672 AGTTAATGAGATTTCTTGAGGCTTTG 58.175 34.615 0.00 0.00 0.00 2.77
235 236 7.667219 AGTTAATGAGATTTCTTGAGGCTTTGA 59.333 33.333 0.00 0.00 0.00 2.69
236 237 6.512342 AATGAGATTTCTTGAGGCTTTGAG 57.488 37.500 0.00 0.00 0.00 3.02
237 238 4.978099 TGAGATTTCTTGAGGCTTTGAGT 58.022 39.130 0.00 0.00 0.00 3.41
238 239 4.758674 TGAGATTTCTTGAGGCTTTGAGTG 59.241 41.667 0.00 0.00 0.00 3.51
239 240 3.505293 AGATTTCTTGAGGCTTTGAGTGC 59.495 43.478 0.00 0.00 0.00 4.40
240 241 1.229428 TTCTTGAGGCTTTGAGTGCG 58.771 50.000 0.00 0.00 0.00 5.34
241 242 0.392706 TCTTGAGGCTTTGAGTGCGA 59.607 50.000 0.00 0.00 0.00 5.10
242 243 0.795085 CTTGAGGCTTTGAGTGCGAG 59.205 55.000 0.00 0.00 0.00 5.03
243 244 1.230635 TTGAGGCTTTGAGTGCGAGC 61.231 55.000 0.00 0.00 35.71 5.03
244 245 1.375268 GAGGCTTTGAGTGCGAGCT 60.375 57.895 0.00 0.00 36.66 4.09
245 246 1.633852 GAGGCTTTGAGTGCGAGCTG 61.634 60.000 0.00 0.00 36.66 4.24
246 247 1.669115 GGCTTTGAGTGCGAGCTGA 60.669 57.895 0.00 0.00 36.66 4.26
247 248 1.633852 GGCTTTGAGTGCGAGCTGAG 61.634 60.000 0.00 0.00 36.66 3.35
248 249 0.668706 GCTTTGAGTGCGAGCTGAGA 60.669 55.000 0.00 0.00 33.72 3.27
249 250 2.006056 GCTTTGAGTGCGAGCTGAGAT 61.006 52.381 0.00 0.00 33.72 2.75
250 251 1.659601 CTTTGAGTGCGAGCTGAGATG 59.340 52.381 0.00 0.00 0.00 2.90
251 252 0.108472 TTGAGTGCGAGCTGAGATGG 60.108 55.000 0.00 0.00 0.00 3.51
252 253 1.227205 GAGTGCGAGCTGAGATGGG 60.227 63.158 0.00 0.00 0.00 4.00
253 254 2.894387 GTGCGAGCTGAGATGGGC 60.894 66.667 0.00 0.00 0.00 5.36
254 255 3.079478 TGCGAGCTGAGATGGGCT 61.079 61.111 0.00 0.00 41.88 5.19
281 282 4.760047 CTAGCGCGGGGTGCAGTT 62.760 66.667 15.06 0.00 46.97 3.16
282 283 4.323477 TAGCGCGGGGTGCAGTTT 62.323 61.111 15.06 0.00 46.97 2.66
283 284 3.835790 TAGCGCGGGGTGCAGTTTT 62.836 57.895 15.06 0.00 46.97 2.43
284 285 4.700365 GCGCGGGGTGCAGTTTTC 62.700 66.667 8.83 0.00 46.97 2.29
285 286 4.038080 CGCGGGGTGCAGTTTTCC 62.038 66.667 0.00 0.00 46.97 3.13
286 287 2.909965 GCGGGGTGCAGTTTTCCA 60.910 61.111 0.00 0.00 45.45 3.53
287 288 2.494530 GCGGGGTGCAGTTTTCCAA 61.495 57.895 0.00 0.00 45.45 3.53
288 289 1.815817 GCGGGGTGCAGTTTTCCAAT 61.816 55.000 0.00 0.00 45.45 3.16
289 290 0.038343 CGGGGTGCAGTTTTCCAATG 60.038 55.000 0.00 0.00 0.00 2.82
290 291 1.047801 GGGGTGCAGTTTTCCAATGT 58.952 50.000 0.00 0.00 0.00 2.71
291 292 1.000843 GGGGTGCAGTTTTCCAATGTC 59.999 52.381 0.00 0.00 0.00 3.06
292 293 1.963515 GGGTGCAGTTTTCCAATGTCT 59.036 47.619 0.00 0.00 0.00 3.41
293 294 2.288395 GGGTGCAGTTTTCCAATGTCTG 60.288 50.000 0.00 0.00 0.00 3.51
294 295 2.622942 GGTGCAGTTTTCCAATGTCTGA 59.377 45.455 0.00 0.00 0.00 3.27
295 296 3.068024 GGTGCAGTTTTCCAATGTCTGAA 59.932 43.478 0.00 0.00 0.00 3.02
296 297 4.293415 GTGCAGTTTTCCAATGTCTGAAG 58.707 43.478 0.00 0.00 0.00 3.02
297 298 4.036734 GTGCAGTTTTCCAATGTCTGAAGA 59.963 41.667 0.00 0.00 0.00 2.87
298 299 4.036734 TGCAGTTTTCCAATGTCTGAAGAC 59.963 41.667 3.41 3.41 44.97 3.01
309 310 3.980238 GTCTGAAGACGTGCTGTTATG 57.020 47.619 0.00 0.00 35.12 1.90
310 311 3.575630 GTCTGAAGACGTGCTGTTATGA 58.424 45.455 0.00 0.00 35.12 2.15
311 312 3.987868 GTCTGAAGACGTGCTGTTATGAA 59.012 43.478 0.00 0.00 35.12 2.57
312 313 3.987868 TCTGAAGACGTGCTGTTATGAAC 59.012 43.478 0.00 0.00 0.00 3.18
313 314 2.729360 TGAAGACGTGCTGTTATGAACG 59.271 45.455 0.00 0.00 44.06 3.95
314 315 1.710013 AGACGTGCTGTTATGAACGG 58.290 50.000 0.00 0.00 42.87 4.44
315 316 1.000506 AGACGTGCTGTTATGAACGGT 59.999 47.619 0.00 0.00 42.87 4.83
316 317 1.389106 GACGTGCTGTTATGAACGGTC 59.611 52.381 0.00 0.00 42.87 4.79
317 318 1.000506 ACGTGCTGTTATGAACGGTCT 59.999 47.619 0.33 0.00 42.87 3.85
318 319 1.390123 CGTGCTGTTATGAACGGTCTG 59.610 52.381 0.33 0.00 39.98 3.51
319 320 1.128692 GTGCTGTTATGAACGGTCTGC 59.871 52.381 0.33 0.00 39.98 4.26
320 321 1.270571 TGCTGTTATGAACGGTCTGCA 60.271 47.619 0.33 0.00 39.98 4.41
321 322 1.128692 GCTGTTATGAACGGTCTGCAC 59.871 52.381 0.33 0.00 39.98 4.57
322 323 2.412870 CTGTTATGAACGGTCTGCACA 58.587 47.619 0.33 0.33 33.03 4.57
323 324 2.805671 CTGTTATGAACGGTCTGCACAA 59.194 45.455 0.33 0.00 33.03 3.33
324 325 3.407698 TGTTATGAACGGTCTGCACAAT 58.592 40.909 0.33 0.00 0.00 2.71
325 326 3.818210 TGTTATGAACGGTCTGCACAATT 59.182 39.130 0.33 0.00 0.00 2.32
326 327 4.083537 TGTTATGAACGGTCTGCACAATTC 60.084 41.667 0.33 0.00 0.00 2.17
327 328 0.865111 TGAACGGTCTGCACAATTCG 59.135 50.000 0.33 0.00 0.00 3.34
328 329 0.165944 GAACGGTCTGCACAATTCGG 59.834 55.000 0.00 0.00 0.00 4.30
329 330 1.852067 AACGGTCTGCACAATTCGGC 61.852 55.000 0.00 0.00 0.00 5.54
330 331 2.034879 CGGTCTGCACAATTCGGCT 61.035 57.895 0.00 0.00 0.00 5.52
331 332 1.577328 CGGTCTGCACAATTCGGCTT 61.577 55.000 0.00 0.00 0.00 4.35
332 333 0.598065 GGTCTGCACAATTCGGCTTT 59.402 50.000 0.00 0.00 0.00 3.51
333 334 1.401539 GGTCTGCACAATTCGGCTTTC 60.402 52.381 0.00 0.00 0.00 2.62
334 335 1.537202 GTCTGCACAATTCGGCTTTCT 59.463 47.619 0.00 0.00 0.00 2.52
335 336 2.030805 GTCTGCACAATTCGGCTTTCTT 60.031 45.455 0.00 0.00 0.00 2.52
336 337 2.030893 TCTGCACAATTCGGCTTTCTTG 60.031 45.455 0.00 0.00 0.00 3.02
337 338 1.680735 TGCACAATTCGGCTTTCTTGT 59.319 42.857 0.00 0.00 32.27 3.16
341 342 4.853924 ACAATTCGGCTTTCTTGTGAAT 57.146 36.364 0.00 0.00 31.00 2.57
342 343 5.957842 ACAATTCGGCTTTCTTGTGAATA 57.042 34.783 0.00 0.00 31.00 1.75
343 344 5.699839 ACAATTCGGCTTTCTTGTGAATAC 58.300 37.500 0.00 0.00 31.00 1.89
344 345 5.240623 ACAATTCGGCTTTCTTGTGAATACA 59.759 36.000 0.00 0.00 31.00 2.29
345 346 4.742438 TTCGGCTTTCTTGTGAATACAC 57.258 40.909 0.00 0.00 46.09 2.90
355 356 0.713883 GTGAATACACGTGACGGCTG 59.286 55.000 25.01 1.40 37.28 4.85
359 360 0.170561 ATACACGTGACGGCTGTCTC 59.829 55.000 25.01 20.72 45.70 3.36
364 365 4.056125 TGACGGCTGTCTCGCTGG 62.056 66.667 25.54 0.00 45.70 4.85
377 378 3.567473 GCTGGTTCTGGCGACTTC 58.433 61.111 0.00 0.00 0.00 3.01
378 379 1.004440 GCTGGTTCTGGCGACTTCT 60.004 57.895 0.00 0.00 0.00 2.85
391 392 2.400399 CGACTTCTTGGCGTCTTTGTA 58.600 47.619 0.00 0.00 43.40 2.41
399 400 4.546637 CGTCTTTGTACGCGACCT 57.453 55.556 15.93 0.00 35.87 3.85
400 401 2.346884 CGTCTTTGTACGCGACCTC 58.653 57.895 15.93 0.00 35.87 3.85
430 431 1.181786 TTTGCCGTTCAATCCCCATC 58.818 50.000 0.00 0.00 34.12 3.51
432 433 1.077068 GCCGTTCAATCCCCATCCA 60.077 57.895 0.00 0.00 0.00 3.41
433 434 0.682855 GCCGTTCAATCCCCATCCAA 60.683 55.000 0.00 0.00 0.00 3.53
435 436 1.956477 CCGTTCAATCCCCATCCAATC 59.044 52.381 0.00 0.00 0.00 2.67
442 443 1.679981 TCCCCATCCAATCTTCCACA 58.320 50.000 0.00 0.00 0.00 4.17
454 455 5.063312 CCAATCTTCCACAAAACAAACACAC 59.937 40.000 0.00 0.00 0.00 3.82
457 458 4.985409 TCTTCCACAAAACAAACACACAAC 59.015 37.500 0.00 0.00 0.00 3.32
458 459 4.322080 TCCACAAAACAAACACACAACA 57.678 36.364 0.00 0.00 0.00 3.33
459 460 4.693283 TCCACAAAACAAACACACAACAA 58.307 34.783 0.00 0.00 0.00 2.83
460 461 5.300752 TCCACAAAACAAACACACAACAAT 58.699 33.333 0.00 0.00 0.00 2.71
464 465 6.587990 CACAAAACAAACACACAACAATCCTA 59.412 34.615 0.00 0.00 0.00 2.94
469 470 6.512297 ACAAACACACAACAATCCTAATTCC 58.488 36.000 0.00 0.00 0.00 3.01
470 471 6.323739 ACAAACACACAACAATCCTAATTCCT 59.676 34.615 0.00 0.00 0.00 3.36
471 472 6.976934 AACACACAACAATCCTAATTCCTT 57.023 33.333 0.00 0.00 0.00 3.36
475 476 6.868339 CACACAACAATCCTAATTCCTTTTCC 59.132 38.462 0.00 0.00 0.00 3.13
476 477 6.782494 ACACAACAATCCTAATTCCTTTTCCT 59.218 34.615 0.00 0.00 0.00 3.36
477 478 7.039714 ACACAACAATCCTAATTCCTTTTCCTC 60.040 37.037 0.00 0.00 0.00 3.71
484 485 6.217297 TCCTAATTCCTTTTCCTCCCATCTA 58.783 40.000 0.00 0.00 0.00 1.98
486 487 6.330250 CCTAATTCCTTTTCCTCCCATCTAGA 59.670 42.308 0.00 0.00 0.00 2.43
488 489 4.354208 TCCTTTTCCTCCCATCTAGAGT 57.646 45.455 0.00 0.00 0.00 3.24
489 490 4.290942 TCCTTTTCCTCCCATCTAGAGTC 58.709 47.826 0.00 0.00 0.00 3.36
503 505 7.235079 CCATCTAGAGTCTAATTCCAGTCCTA 58.765 42.308 0.64 0.00 0.00 2.94
504 506 7.893302 CCATCTAGAGTCTAATTCCAGTCCTAT 59.107 40.741 0.64 0.00 0.00 2.57
505 507 9.308000 CATCTAGAGTCTAATTCCAGTCCTATT 57.692 37.037 0.64 0.00 0.00 1.73
507 509 8.729047 TCTAGAGTCTAATTCCAGTCCTATTCT 58.271 37.037 0.64 0.00 0.00 2.40
511 513 6.207810 AGTCTAATTCCAGTCCTATTCTAGCG 59.792 42.308 0.00 0.00 0.00 4.26
513 515 6.948886 TCTAATTCCAGTCCTATTCTAGCGAT 59.051 38.462 0.00 0.00 0.00 4.58
522 524 5.009210 GTCCTATTCTAGCGATTGTGAGAGT 59.991 44.000 0.00 0.00 0.00 3.24
523 525 5.009110 TCCTATTCTAGCGATTGTGAGAGTG 59.991 44.000 0.00 0.00 0.00 3.51
524 526 4.991153 ATTCTAGCGATTGTGAGAGTGA 57.009 40.909 0.00 0.00 0.00 3.41
525 527 4.783764 TTCTAGCGATTGTGAGAGTGAA 57.216 40.909 0.00 0.00 0.00 3.18
532 537 4.742417 CGATTGTGAGAGTGAACAGATCT 58.258 43.478 0.00 0.00 0.00 2.75
535 540 4.780275 TGTGAGAGTGAACAGATCTGAG 57.220 45.455 29.27 3.89 0.00 3.35
538 543 4.922692 GTGAGAGTGAACAGATCTGAGTTG 59.077 45.833 29.27 3.31 0.00 3.16
542 547 5.248020 AGAGTGAACAGATCTGAGTTGGAAT 59.752 40.000 29.27 6.88 0.00 3.01
545 550 7.102346 AGTGAACAGATCTGAGTTGGAATAAG 58.898 38.462 29.27 0.00 0.00 1.73
546 551 6.876257 GTGAACAGATCTGAGTTGGAATAAGT 59.124 38.462 29.27 0.00 0.00 2.24
547 552 6.875726 TGAACAGATCTGAGTTGGAATAAGTG 59.124 38.462 29.27 0.00 0.00 3.16
548 553 6.611613 ACAGATCTGAGTTGGAATAAGTGA 57.388 37.500 29.27 0.00 0.00 3.41
557 562 5.552178 AGTTGGAATAAGTGAGTGAGGAAC 58.448 41.667 0.00 0.00 0.00 3.62
561 566 5.306937 TGGAATAAGTGAGTGAGGAACAGAA 59.693 40.000 0.00 0.00 0.00 3.02
591 596 1.271054 GGAGCAAGATCTGGTGTGTGT 60.271 52.381 0.00 0.00 35.35 3.72
592 597 1.802960 GAGCAAGATCTGGTGTGTGTG 59.197 52.381 0.00 0.00 35.35 3.82
593 598 0.877071 GCAAGATCTGGTGTGTGTGG 59.123 55.000 0.00 0.00 0.00 4.17
594 599 0.877071 CAAGATCTGGTGTGTGTGGC 59.123 55.000 0.00 0.00 0.00 5.01
595 600 0.603707 AAGATCTGGTGTGTGTGGCG 60.604 55.000 0.00 0.00 0.00 5.69
596 601 1.005037 GATCTGGTGTGTGTGGCGA 60.005 57.895 0.00 0.00 0.00 5.54
612 617 3.508840 GACGGCGGCAGATTTGGG 61.509 66.667 8.47 0.00 0.00 4.12
618 623 2.274104 GGCAGATTTGGGGGCGTA 59.726 61.111 0.00 0.00 0.00 4.42
619 624 1.823899 GGCAGATTTGGGGGCGTAG 60.824 63.158 0.00 0.00 0.00 3.51
625 630 2.850851 ATTTGGGGGCGTAGAGGGGA 62.851 60.000 0.00 0.00 0.00 4.81
630 635 2.760385 GGCGTAGAGGGGACTGCT 60.760 66.667 0.00 0.00 44.43 4.24
631 636 2.787567 GGCGTAGAGGGGACTGCTC 61.788 68.421 0.00 0.00 44.43 4.26
632 637 3.111939 CGTAGAGGGGACTGCTCG 58.888 66.667 0.00 0.00 44.43 5.03
637 642 3.966930 GAGGGGACTGCTCGGGAGT 62.967 68.421 0.00 0.00 44.43 3.85
640 645 2.997897 GGACTGCTCGGGAGTGGT 60.998 66.667 2.98 0.00 0.00 4.16
641 646 2.262915 GACTGCTCGGGAGTGGTG 59.737 66.667 2.98 0.00 0.00 4.17
642 647 2.203640 ACTGCTCGGGAGTGGTGA 60.204 61.111 0.00 0.00 0.00 4.02
646 651 2.663196 CTCGGGAGTGGTGAACCC 59.337 66.667 0.00 0.00 40.17 4.11
650 655 2.529744 GGGAGTGGTGAACCCAGCT 61.530 63.158 0.00 0.00 46.45 4.24
705 710 1.301293 CCTTGGAGGAGTGAAGGGC 59.699 63.158 0.00 0.00 37.67 5.19
708 713 0.401738 TTGGAGGAGTGAAGGGCAAG 59.598 55.000 0.00 0.00 0.00 4.01
729 734 2.807392 GCTCAAGAATCTGCAGCTATCC 59.193 50.000 9.47 0.00 0.00 2.59
752 757 0.541863 GCGGAGAAGAAGGGGATCAA 59.458 55.000 0.00 0.00 0.00 2.57
759 764 2.744352 AGAAGGGGATCAAGATTGGC 57.256 50.000 0.00 0.00 0.00 4.52
768 773 3.703052 GGATCAAGATTGGCAGGAAACAT 59.297 43.478 0.00 0.00 0.00 2.71
774 779 1.340088 TTGGCAGGAAACATGCATGT 58.660 45.000 26.61 26.61 45.68 3.21
855 860 1.541588 GCAGAACATGTGGGAAGAACC 59.458 52.381 0.00 0.00 38.08 3.62
873 883 2.850695 CCTTAGGGGTAGTCTGGAGT 57.149 55.000 0.00 0.00 0.00 3.85
879 889 2.590611 AGGGGTAGTCTGGAGTCCATTA 59.409 50.000 13.56 0.69 30.82 1.90
900 910 4.525912 ATTTGGAGTGGAATGCAAAGAC 57.474 40.909 0.00 0.00 42.63 3.01
909 919 0.112995 AATGCAAAGACCTGGGCAGA 59.887 50.000 0.47 0.00 39.95 4.26
919 929 2.755103 GACCTGGGCAGAAATCGATTTT 59.245 45.455 23.49 11.39 0.00 1.82
921 931 3.056607 ACCTGGGCAGAAATCGATTTTTG 60.057 43.478 28.12 28.12 35.63 2.44
954 964 5.410067 CAACAAAGAGCTGACAAGGAAAAA 58.590 37.500 0.00 0.00 0.00 1.94
1017 1027 2.359900 GTGATGGAAGATTTCGTGCCT 58.640 47.619 0.00 0.00 0.00 4.75
1026 1036 5.410439 GGAAGATTTCGTGCCTAGTAAAACA 59.590 40.000 0.00 0.00 0.00 2.83
1065 1075 6.833346 TTCAGGACAATACCAATATGGGTA 57.167 37.500 11.59 11.59 46.86 3.69
1071 1081 5.305585 ACAATACCAATATGGGTAAGAGCG 58.694 41.667 13.20 3.27 46.00 5.03
1108 1119 3.511146 GGGGATGATGAGCAAAGAAACAA 59.489 43.478 0.00 0.00 0.00 2.83
1116 1127 7.143340 TGATGAGCAAAGAAACAAGAGATTTG 58.857 34.615 0.00 0.00 34.70 2.32
1117 1128 6.698008 TGAGCAAAGAAACAAGAGATTTGA 57.302 33.333 0.00 0.00 33.69 2.69
1134 1145 7.559170 AGAGATTTGATAGGAGAACAAATTGGG 59.441 37.037 0.00 0.00 41.96 4.12
1135 1146 7.413446 AGATTTGATAGGAGAACAAATTGGGA 58.587 34.615 0.00 0.00 41.96 4.37
1140 1151 6.659242 TGATAGGAGAACAAATTGGGAAAGTC 59.341 38.462 0.00 0.00 0.00 3.01
1158 1169 5.762179 AAGTCATTGATGTAGACCCAGAA 57.238 39.130 0.00 0.00 32.82 3.02
1173 1184 5.251700 AGACCCAGAAATTAGTGGTGATTCT 59.748 40.000 5.50 0.00 31.17 2.40
1215 1226 7.543868 CGGATCAAAGTGAGAATAGATATCACC 59.456 40.741 5.32 0.00 43.47 4.02
1216 1227 8.370940 GGATCAAAGTGAGAATAGATATCACCA 58.629 37.037 5.32 0.00 43.47 4.17
1218 1229 9.722184 ATCAAAGTGAGAATAGATATCACCATG 57.278 33.333 5.32 1.95 43.47 3.66
1234 1245 4.160065 TCACCATGCCAATTATGAGGTTTG 59.840 41.667 0.00 0.00 0.00 2.93
1280 1291 4.279420 GGAAGAACAAGAGCAGGAAAATGT 59.721 41.667 0.00 0.00 0.00 2.71
1289 1300 7.067494 ACAAGAGCAGGAAAATGTAATGATACC 59.933 37.037 0.00 0.00 0.00 2.73
1310 1321 3.241156 CTGTGGGAGATGATGAGGAGAT 58.759 50.000 0.00 0.00 0.00 2.75
1315 1330 5.047377 GTGGGAGATGATGAGGAGATAGAAC 60.047 48.000 0.00 0.00 0.00 3.01
1320 1335 7.122650 GGAGATGATGAGGAGATAGAACTAAGG 59.877 44.444 0.00 0.00 0.00 2.69
1321 1336 7.764617 AGATGATGAGGAGATAGAACTAAGGA 58.235 38.462 0.00 0.00 0.00 3.36
1331 1346 8.630037 GGAGATAGAACTAAGGAGAAAGAAGAG 58.370 40.741 0.00 0.00 0.00 2.85
1337 1352 9.100197 AGAACTAAGGAGAAAGAAGAGAGAAAT 57.900 33.333 0.00 0.00 0.00 2.17
1347 1362 8.001292 AGAAAGAAGAGAGAAATGGAGGAAAAA 58.999 33.333 0.00 0.00 0.00 1.94
1377 1392 5.446860 TCCTTCACATACGAGTATCTTCCT 58.553 41.667 0.00 0.00 0.00 3.36
1389 1404 5.504994 CGAGTATCTTCCTGACTTCTGCTAC 60.505 48.000 0.00 0.00 0.00 3.58
1392 1407 2.232452 TCTTCCTGACTTCTGCTACAGC 59.768 50.000 0.00 0.00 42.50 4.40
1414 1429 6.992123 CAGCTGTGGAATTATTGGACATACTA 59.008 38.462 5.25 0.00 0.00 1.82
1461 1476 1.694696 AGAACAGGGTCCAGACAGTTC 59.305 52.381 15.99 15.99 38.36 3.01
1485 1500 2.891112 CCATGGTTGCGTGCAAATATT 58.109 42.857 9.13 0.00 37.70 1.28
1500 1515 4.261197 GCAAATATTTACAAGGGGAGCTCG 60.261 45.833 7.83 0.00 0.00 5.03
1536 1551 3.577805 AGGGGTTCGAATGATAAAGGG 57.422 47.619 0.00 0.00 0.00 3.95
1545 1560 8.032451 GGTTCGAATGATAAAGGGAAATTTTGA 58.968 33.333 0.00 0.00 0.00 2.69
1546 1561 9.586435 GTTCGAATGATAAAGGGAAATTTTGAT 57.414 29.630 0.00 0.00 0.00 2.57
1576 1591 0.107214 TGCAGGAAATAAGGGGAGCG 60.107 55.000 0.00 0.00 0.00 5.03
1584 1599 0.620700 ATAAGGGGAGCGGACAAGGT 60.621 55.000 0.00 0.00 0.00 3.50
1620 1635 1.349688 TGGCGAAGGAATGTACCAAGT 59.650 47.619 0.00 0.00 0.00 3.16
1629 1644 4.080863 AGGAATGTACCAAGTGGAGATGAC 60.081 45.833 3.83 0.00 38.94 3.06
1639 1654 1.407258 GTGGAGATGACGAGGAAGGAG 59.593 57.143 0.00 0.00 0.00 3.69
1675 1690 2.959030 GGAAAAGAAGTGACAAGCCCTT 59.041 45.455 0.00 0.00 0.00 3.95
1678 1693 1.884235 AGAAGTGACAAGCCCTTTCG 58.116 50.000 0.00 0.00 0.00 3.46
1679 1694 0.238553 GAAGTGACAAGCCCTTTCGC 59.761 55.000 0.00 0.00 0.00 4.70
1686 1701 1.265905 ACAAGCCCTTTCGCGTTAAAG 59.734 47.619 5.77 9.74 36.43 1.85
1706 1721 0.036858 GAGTGTGAGGACCAAGGAGC 60.037 60.000 0.00 0.00 0.00 4.70
1714 1729 1.613630 GACCAAGGAGCAGGGGAGA 60.614 63.158 0.00 0.00 0.00 3.71
1716 1731 1.306482 CCAAGGAGCAGGGGAGAGA 60.306 63.158 0.00 0.00 0.00 3.10
1719 1734 1.065564 CAAGGAGCAGGGGAGAGAAAG 60.066 57.143 0.00 0.00 0.00 2.62
1723 1738 2.397597 GAGCAGGGGAGAGAAAGAGAT 58.602 52.381 0.00 0.00 0.00 2.75
1729 1744 4.165758 CAGGGGAGAGAAAGAGATTGGATT 59.834 45.833 0.00 0.00 0.00 3.01
1730 1745 4.411869 AGGGGAGAGAAAGAGATTGGATTC 59.588 45.833 0.00 0.00 0.00 2.52
1735 1750 5.181748 AGAGAAAGAGATTGGATTCCAACG 58.818 41.667 20.21 0.00 46.95 4.10
1736 1751 5.046304 AGAGAAAGAGATTGGATTCCAACGA 60.046 40.000 20.21 0.00 46.95 3.85
1739 1754 6.490040 AGAAAGAGATTGGATTCCAACGAAAA 59.510 34.615 20.21 0.00 46.95 2.29
1744 1759 4.314740 TTGGATTCCAACGAAAAAGTGG 57.685 40.909 14.24 0.00 38.75 4.00
1747 1762 4.517453 TGGATTCCAACGAAAAAGTGGTAG 59.483 41.667 1.94 0.00 0.00 3.18
1752 1767 5.054477 TCCAACGAAAAAGTGGTAGAAGAG 58.946 41.667 0.00 0.00 0.00 2.85
1759 1774 3.759815 AAGTGGTAGAAGAGCCCTCTA 57.240 47.619 0.00 0.00 39.39 2.43
1772 1787 4.004314 GAGCCCTCTAGAAAGGAACAAAC 58.996 47.826 11.83 0.00 38.87 2.93
1778 1793 5.278022 CCTCTAGAAAGGAACAAACACTTGC 60.278 44.000 0.00 0.00 38.87 4.01
1797 1812 3.728845 TGCAATAGAATCGAGTAAGGCC 58.271 45.455 0.00 0.00 0.00 5.19
1804 1819 1.033574 ATCGAGTAAGGCCGAAGAGG 58.966 55.000 0.00 0.00 44.97 3.69
1806 1821 0.815734 CGAGTAAGGCCGAAGAGGAA 59.184 55.000 0.00 0.00 45.00 3.36
1830 1845 8.956533 AAAATAACACTACCACAAAAGCAAAT 57.043 26.923 0.00 0.00 0.00 2.32
1832 1847 4.223320 ACACTACCACAAAAGCAAATCG 57.777 40.909 0.00 0.00 0.00 3.34
1847 1862 4.984161 AGCAAATCGTGTTTCAAAAGGATG 59.016 37.500 0.00 0.00 0.00 3.51
1848 1863 4.376311 GCAAATCGTGTTTCAAAAGGATGC 60.376 41.667 0.00 0.00 0.00 3.91
1858 1873 0.596082 AAAAGGATGCGGTCAAACGG 59.404 50.000 0.00 0.00 0.00 4.44
1865 1880 0.034198 TGCGGTCAAACGGAGATCAA 59.966 50.000 0.00 0.00 0.00 2.57
1867 1882 1.327764 GCGGTCAAACGGAGATCAATC 59.672 52.381 0.00 0.00 0.00 2.67
1877 1892 5.869753 ACGGAGATCAATCAACAAGAAAG 57.130 39.130 0.00 0.00 0.00 2.62
1881 1896 5.860716 GGAGATCAATCAACAAGAAAGCAAC 59.139 40.000 0.00 0.00 0.00 4.17
1884 1899 5.242069 TCAATCAACAAGAAAGCAACGAA 57.758 34.783 0.00 0.00 0.00 3.85
1907 1922 7.480542 CGAAATAACAAATCAAGTAGAAACGGG 59.519 37.037 0.00 0.00 0.00 5.28
1909 1924 4.360951 ACAAATCAAGTAGAAACGGGGA 57.639 40.909 0.00 0.00 0.00 4.81
1910 1925 4.070009 ACAAATCAAGTAGAAACGGGGAC 58.930 43.478 0.00 0.00 0.00 4.46
1913 1928 1.621814 TCAAGTAGAAACGGGGACAGG 59.378 52.381 0.00 0.00 0.00 4.00
1915 1930 0.115745 AGTAGAAACGGGGACAGGGA 59.884 55.000 0.00 0.00 0.00 4.20
1922 1937 0.326618 ACGGGGACAGGGATGAAGAT 60.327 55.000 0.00 0.00 0.00 2.40
1931 1946 5.444176 GACAGGGATGAAGATGAAGGAATT 58.556 41.667 0.00 0.00 0.00 2.17
1943 1958 9.890352 GAAGATGAAGGAATTACAGAAATATGC 57.110 33.333 0.00 0.00 0.00 3.14
1944 1959 8.401490 AGATGAAGGAATTACAGAAATATGCC 57.599 34.615 0.00 0.00 0.00 4.40
2004 2020 8.233190 GGAAGAACAGTCAAAATTATGAGACAG 58.767 37.037 0.00 0.00 33.56 3.51
2012 2028 7.930865 AGTCAAAATTATGAGACAGGATAGAGC 59.069 37.037 0.00 0.00 33.56 4.09
2016 2032 6.849085 ATTATGAGACAGGATAGAGCGAAT 57.151 37.500 0.00 0.00 0.00 3.34
2017 2033 7.946381 ATTATGAGACAGGATAGAGCGAATA 57.054 36.000 0.00 0.00 0.00 1.75
2019 2035 6.656632 ATGAGACAGGATAGAGCGAATAAA 57.343 37.500 0.00 0.00 0.00 1.40
2020 2036 6.078202 TGAGACAGGATAGAGCGAATAAAG 57.922 41.667 0.00 0.00 0.00 1.85
2034 2050 4.379793 GCGAATAAAGCACAAACTCAAGTG 59.620 41.667 0.00 0.00 38.74 3.16
2050 2066 4.264253 TCAAGTGAATATGGCCACAGAAG 58.736 43.478 8.16 0.00 35.84 2.85
2085 2101 5.300034 TGGTGCAGATGATATGGAAATTGAC 59.700 40.000 0.00 0.00 0.00 3.18
2086 2102 5.300034 GGTGCAGATGATATGGAAATTGACA 59.700 40.000 0.00 0.00 0.00 3.58
2099 2115 2.119801 ATTGACATGGAGCCAGTCAC 57.880 50.000 16.20 1.81 41.53 3.67
2100 2116 1.059098 TTGACATGGAGCCAGTCACT 58.941 50.000 16.20 0.00 41.53 3.41
2121 2137 8.137437 GTCACTGAGAAAAAGATGAAAATGGAA 58.863 33.333 0.00 0.00 0.00 3.53
2136 2152 8.225603 TGAAAATGGAAGTAGAGATAAATGCC 57.774 34.615 0.00 0.00 0.00 4.40
2138 2154 7.573968 AAATGGAAGTAGAGATAAATGCCAC 57.426 36.000 0.00 0.00 0.00 5.01
2141 2157 5.070446 TGGAAGTAGAGATAAATGCCACGAT 59.930 40.000 0.00 0.00 0.00 3.73
2142 2158 5.635700 GGAAGTAGAGATAAATGCCACGATC 59.364 44.000 0.00 0.00 0.00 3.69
2144 2160 4.519350 AGTAGAGATAAATGCCACGATCGA 59.481 41.667 24.34 0.00 0.00 3.59
2154 2170 1.032794 CCACGATCGATGAAGGGAGA 58.967 55.000 24.34 0.00 0.00 3.71
2215 2231 2.038269 GTGAAAGCGGGATTGGCGA 61.038 57.895 0.00 0.00 35.00 5.54
2256 2272 0.744771 GAGGATCACGGCTTGGAACC 60.745 60.000 0.00 0.00 33.17 3.62
2301 2317 1.138661 CAGTGAGAGGGCTTCTGGATC 59.861 57.143 2.91 0.00 35.87 3.36
2303 2319 1.138661 GTGAGAGGGCTTCTGGATCTG 59.861 57.143 2.91 0.00 35.87 2.90
2402 2418 4.141367 TGGCGATTGGGAATGAATAACCTA 60.141 41.667 0.00 0.00 0.00 3.08
2407 2423 6.202954 CGATTGGGAATGAATAACCTAGTGAC 59.797 42.308 0.00 0.00 0.00 3.67
2432 2448 3.551846 GGACTGTGAAGGAAAAAGTGGA 58.448 45.455 0.00 0.00 0.00 4.02
2445 2461 2.753029 GTGGAGGCCTTGCACTCT 59.247 61.111 6.77 0.00 44.03 3.24
2463 2479 8.668510 TGCACTCTTATGGAAGAAAGATATTC 57.331 34.615 0.00 0.00 41.23 1.75
2534 2550 4.197750 CTGAAGGAGATGGTTTCAGATGG 58.802 47.826 7.50 0.00 46.71 3.51
2542 2558 6.484977 GGAGATGGTTTCAGATGGAGATTTAC 59.515 42.308 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.827652 CTCCTAGCTCGGATTTTGACC 58.172 52.381 7.55 0.00 31.43 4.02
3 4 1.202417 CGCTCCTAGCTCGGATTTTGA 60.202 52.381 7.55 0.00 39.60 2.69
5 6 1.067821 CTCGCTCCTAGCTCGGATTTT 59.932 52.381 7.55 0.00 39.60 1.82
6 7 0.671251 CTCGCTCCTAGCTCGGATTT 59.329 55.000 7.55 0.00 39.60 2.17
7 8 1.801309 GCTCGCTCCTAGCTCGGATT 61.801 60.000 7.55 0.00 39.60 3.01
8 9 2.265182 GCTCGCTCCTAGCTCGGAT 61.265 63.158 7.55 0.00 39.60 4.18
9 10 2.902846 GCTCGCTCCTAGCTCGGA 60.903 66.667 6.82 6.82 39.60 4.55
10 11 4.320928 CGCTCGCTCCTAGCTCGG 62.321 72.222 0.00 0.00 39.60 4.63
11 12 2.824901 TTCGCTCGCTCCTAGCTCG 61.825 63.158 0.00 0.00 39.60 5.03
12 13 1.298788 GTTCGCTCGCTCCTAGCTC 60.299 63.158 0.00 0.00 39.60 4.09
13 14 0.464013 TAGTTCGCTCGCTCCTAGCT 60.464 55.000 0.00 0.00 39.60 3.32
14 15 0.381089 TTAGTTCGCTCGCTCCTAGC 59.619 55.000 0.00 0.00 38.02 3.42
15 16 2.846039 TTTAGTTCGCTCGCTCCTAG 57.154 50.000 0.00 0.00 0.00 3.02
16 17 2.751259 TCTTTTAGTTCGCTCGCTCCTA 59.249 45.455 0.00 0.00 0.00 2.94
17 18 1.544691 TCTTTTAGTTCGCTCGCTCCT 59.455 47.619 0.00 0.00 0.00 3.69
18 19 1.992170 TCTTTTAGTTCGCTCGCTCC 58.008 50.000 0.00 0.00 0.00 4.70
19 20 4.385244 TTTTCTTTTAGTTCGCTCGCTC 57.615 40.909 0.00 0.00 0.00 5.03
20 21 4.806342 TTTTTCTTTTAGTTCGCTCGCT 57.194 36.364 0.00 0.00 0.00 4.93
38 39 2.422127 CGTATTGAGCCCGTCCATTTTT 59.578 45.455 0.00 0.00 0.00 1.94
39 40 2.014128 CGTATTGAGCCCGTCCATTTT 58.986 47.619 0.00 0.00 0.00 1.82
40 41 1.065709 ACGTATTGAGCCCGTCCATTT 60.066 47.619 0.00 0.00 0.00 2.32
41 42 0.539986 ACGTATTGAGCCCGTCCATT 59.460 50.000 0.00 0.00 0.00 3.16
42 43 1.068127 GTACGTATTGAGCCCGTCCAT 59.932 52.381 0.00 0.00 36.12 3.41
43 44 0.457035 GTACGTATTGAGCCCGTCCA 59.543 55.000 0.00 0.00 36.12 4.02
44 45 0.457035 TGTACGTATTGAGCCCGTCC 59.543 55.000 0.00 0.00 36.12 4.79
45 46 2.124903 CATGTACGTATTGAGCCCGTC 58.875 52.381 0.00 0.00 36.12 4.79
46 47 1.752498 TCATGTACGTATTGAGCCCGT 59.248 47.619 0.00 0.00 38.53 5.28
47 48 2.394708 CTCATGTACGTATTGAGCCCG 58.605 52.381 19.34 4.28 31.35 6.13
48 49 2.755650 CCTCATGTACGTATTGAGCCC 58.244 52.381 23.13 2.47 36.41 5.19
49 50 2.135933 GCCTCATGTACGTATTGAGCC 58.864 52.381 23.13 14.59 36.41 4.70
50 51 3.053455 GAGCCTCATGTACGTATTGAGC 58.947 50.000 23.13 19.38 36.41 4.26
51 52 4.576216 AGAGCCTCATGTACGTATTGAG 57.424 45.455 22.23 22.23 37.27 3.02
52 53 4.519350 CCTAGAGCCTCATGTACGTATTGA 59.481 45.833 0.00 4.83 0.00 2.57
53 54 4.321304 CCCTAGAGCCTCATGTACGTATTG 60.321 50.000 0.00 0.02 0.00 1.90
54 55 3.827302 CCCTAGAGCCTCATGTACGTATT 59.173 47.826 0.00 0.00 0.00 1.89
55 56 3.422796 CCCTAGAGCCTCATGTACGTAT 58.577 50.000 0.00 0.00 0.00 3.06
56 57 2.488528 CCCCTAGAGCCTCATGTACGTA 60.489 54.545 0.00 0.00 0.00 3.57
57 58 1.693627 CCCTAGAGCCTCATGTACGT 58.306 55.000 0.00 0.00 0.00 3.57
58 59 0.962489 CCCCTAGAGCCTCATGTACG 59.038 60.000 0.00 0.00 0.00 3.67
59 60 2.243810 CTCCCCTAGAGCCTCATGTAC 58.756 57.143 0.00 0.00 35.31 2.90
60 61 1.148027 CCTCCCCTAGAGCCTCATGTA 59.852 57.143 0.00 0.00 41.74 2.29
61 62 0.105246 CCTCCCCTAGAGCCTCATGT 60.105 60.000 0.00 0.00 41.74 3.21
62 63 0.835543 CCCTCCCCTAGAGCCTCATG 60.836 65.000 0.00 0.00 41.74 3.07
63 64 1.551358 CCCTCCCCTAGAGCCTCAT 59.449 63.158 0.00 0.00 41.74 2.90
64 65 2.716203 CCCCTCCCCTAGAGCCTCA 61.716 68.421 0.00 0.00 41.74 3.86
65 66 2.202899 CCCCTCCCCTAGAGCCTC 59.797 72.222 0.00 0.00 41.74 4.70
66 67 2.288847 TCCCCTCCCCTAGAGCCT 60.289 66.667 0.00 0.00 41.74 4.58
67 68 2.202899 CTCCCCTCCCCTAGAGCC 59.797 72.222 0.00 0.00 41.74 4.70
68 69 2.525629 GCTCCCCTCCCCTAGAGC 60.526 72.222 0.00 0.00 44.36 4.09
69 70 0.835543 CATGCTCCCCTCCCCTAGAG 60.836 65.000 0.00 0.00 42.83 2.43
70 71 1.237163 CATGCTCCCCTCCCCTAGA 59.763 63.158 0.00 0.00 0.00 2.43
71 72 2.524204 GCATGCTCCCCTCCCCTAG 61.524 68.421 11.37 0.00 0.00 3.02
72 73 2.448542 GCATGCTCCCCTCCCCTA 60.449 66.667 11.37 0.00 0.00 3.53
73 74 4.765970 TGCATGCTCCCCTCCCCT 62.766 66.667 20.33 0.00 0.00 4.79
74 75 3.504204 GATGCATGCTCCCCTCCCC 62.504 68.421 20.33 0.00 0.00 4.81
75 76 2.004408 AAGATGCATGCTCCCCTCCC 62.004 60.000 20.33 0.00 0.00 4.30
76 77 0.822532 CAAGATGCATGCTCCCCTCC 60.823 60.000 20.33 0.21 0.00 4.30
77 78 1.453762 GCAAGATGCATGCTCCCCTC 61.454 60.000 20.33 7.82 44.26 4.30
78 79 1.455217 GCAAGATGCATGCTCCCCT 60.455 57.895 20.33 7.51 44.26 4.79
79 80 3.126528 GCAAGATGCATGCTCCCC 58.873 61.111 20.33 5.23 44.26 4.81
106 107 8.291740 GCGGGAACTAAGTTACTCAAAAATAAA 58.708 33.333 0.00 0.00 0.00 1.40
107 108 7.444792 TGCGGGAACTAAGTTACTCAAAAATAA 59.555 33.333 0.00 0.00 0.00 1.40
108 109 6.935771 TGCGGGAACTAAGTTACTCAAAAATA 59.064 34.615 0.00 0.00 0.00 1.40
109 110 5.766174 TGCGGGAACTAAGTTACTCAAAAAT 59.234 36.000 0.00 0.00 0.00 1.82
110 111 5.124645 TGCGGGAACTAAGTTACTCAAAAA 58.875 37.500 0.00 0.00 0.00 1.94
111 112 4.706035 TGCGGGAACTAAGTTACTCAAAA 58.294 39.130 0.00 0.00 0.00 2.44
112 113 4.202284 ACTGCGGGAACTAAGTTACTCAAA 60.202 41.667 0.00 0.00 0.00 2.69
113 114 3.322828 ACTGCGGGAACTAAGTTACTCAA 59.677 43.478 0.00 0.00 0.00 3.02
114 115 2.895404 ACTGCGGGAACTAAGTTACTCA 59.105 45.455 0.00 0.00 0.00 3.41
115 116 3.509740 GACTGCGGGAACTAAGTTACTC 58.490 50.000 0.00 0.00 0.00 2.59
116 117 2.094854 CGACTGCGGGAACTAAGTTACT 60.095 50.000 0.00 0.00 0.00 2.24
117 118 2.257034 CGACTGCGGGAACTAAGTTAC 58.743 52.381 0.00 0.00 0.00 2.50
118 119 1.403249 GCGACTGCGGGAACTAAGTTA 60.403 52.381 0.00 0.00 38.16 2.24
119 120 0.669625 GCGACTGCGGGAACTAAGTT 60.670 55.000 0.00 0.00 38.16 2.66
120 121 1.080025 GCGACTGCGGGAACTAAGT 60.080 57.895 0.00 0.00 38.16 2.24
121 122 3.782042 GCGACTGCGGGAACTAAG 58.218 61.111 0.00 0.00 38.16 2.18
131 132 0.179124 CCTAGGTTCTCTGCGACTGC 60.179 60.000 0.00 0.00 43.20 4.40
132 133 0.179124 GCCTAGGTTCTCTGCGACTG 60.179 60.000 11.31 0.00 0.00 3.51
133 134 0.612174 TGCCTAGGTTCTCTGCGACT 60.612 55.000 11.31 0.00 0.00 4.18
134 135 0.246635 TTGCCTAGGTTCTCTGCGAC 59.753 55.000 11.31 0.00 0.00 5.19
135 136 1.134699 CATTGCCTAGGTTCTCTGCGA 60.135 52.381 11.31 0.00 0.00 5.10
136 137 1.134699 TCATTGCCTAGGTTCTCTGCG 60.135 52.381 11.31 0.00 0.00 5.18
137 138 2.559440 CTCATTGCCTAGGTTCTCTGC 58.441 52.381 11.31 0.00 0.00 4.26
138 139 2.559440 GCTCATTGCCTAGGTTCTCTG 58.441 52.381 11.31 1.91 35.15 3.35
139 140 2.998316 GCTCATTGCCTAGGTTCTCT 57.002 50.000 11.31 0.00 35.15 3.10
150 151 2.097825 AGAAAGTGATGGGCTCATTGC 58.902 47.619 0.00 0.00 35.97 3.56
151 152 3.760151 TCAAGAAAGTGATGGGCTCATTG 59.240 43.478 0.00 0.00 35.97 2.82
152 153 4.015084 CTCAAGAAAGTGATGGGCTCATT 58.985 43.478 0.00 0.00 35.97 2.57
153 154 3.618351 CTCAAGAAAGTGATGGGCTCAT 58.382 45.455 0.00 0.00 35.97 2.90
154 155 2.290514 CCTCAAGAAAGTGATGGGCTCA 60.291 50.000 0.00 0.00 0.00 4.26
155 156 2.363683 CCTCAAGAAAGTGATGGGCTC 58.636 52.381 0.00 0.00 0.00 4.70
156 157 1.615384 GCCTCAAGAAAGTGATGGGCT 60.615 52.381 0.00 0.00 36.43 5.19
157 158 0.813821 GCCTCAAGAAAGTGATGGGC 59.186 55.000 0.00 0.00 33.29 5.36
158 159 2.503895 AGCCTCAAGAAAGTGATGGG 57.496 50.000 0.00 0.00 0.00 4.00
159 160 3.192212 GGAAAGCCTCAAGAAAGTGATGG 59.808 47.826 0.00 0.00 0.00 3.51
160 161 4.077822 AGGAAAGCCTCAAGAAAGTGATG 58.922 43.478 0.00 0.00 42.19 3.07
161 162 4.077822 CAGGAAAGCCTCAAGAAAGTGAT 58.922 43.478 0.00 0.00 44.80 3.06
162 163 3.117888 ACAGGAAAGCCTCAAGAAAGTGA 60.118 43.478 0.00 0.00 44.80 3.41
163 164 3.004106 CACAGGAAAGCCTCAAGAAAGTG 59.996 47.826 0.00 0.00 44.80 3.16
164 165 3.117888 TCACAGGAAAGCCTCAAGAAAGT 60.118 43.478 0.00 0.00 44.80 2.66
165 166 3.480470 TCACAGGAAAGCCTCAAGAAAG 58.520 45.455 0.00 0.00 44.80 2.62
166 167 3.576078 TCACAGGAAAGCCTCAAGAAA 57.424 42.857 0.00 0.00 44.80 2.52
167 168 3.576078 TTCACAGGAAAGCCTCAAGAA 57.424 42.857 0.00 0.00 44.80 2.52
168 169 3.795688 ATTCACAGGAAAGCCTCAAGA 57.204 42.857 0.00 0.00 44.80 3.02
169 170 5.964958 TTTATTCACAGGAAAGCCTCAAG 57.035 39.130 0.00 0.00 44.80 3.02
170 171 6.916360 ATTTTATTCACAGGAAAGCCTCAA 57.084 33.333 0.00 0.00 44.80 3.02
171 172 6.295236 CCAATTTTATTCACAGGAAAGCCTCA 60.295 38.462 0.00 0.00 44.80 3.86
172 173 6.101997 CCAATTTTATTCACAGGAAAGCCTC 58.898 40.000 0.00 0.00 44.80 4.70
174 175 5.178061 CCCAATTTTATTCACAGGAAAGCC 58.822 41.667 0.00 0.00 36.43 4.35
175 176 4.631377 GCCCAATTTTATTCACAGGAAAGC 59.369 41.667 0.00 0.00 36.43 3.51
176 177 5.870978 CAGCCCAATTTTATTCACAGGAAAG 59.129 40.000 0.00 0.00 36.43 2.62
177 178 5.792741 CAGCCCAATTTTATTCACAGGAAA 58.207 37.500 0.00 0.00 36.43 3.13
178 179 4.322650 GCAGCCCAATTTTATTCACAGGAA 60.323 41.667 0.00 0.00 37.45 3.36
179 180 3.195396 GCAGCCCAATTTTATTCACAGGA 59.805 43.478 0.00 0.00 0.00 3.86
180 181 3.055963 TGCAGCCCAATTTTATTCACAGG 60.056 43.478 0.00 0.00 0.00 4.00
181 182 4.191033 TGCAGCCCAATTTTATTCACAG 57.809 40.909 0.00 0.00 0.00 3.66
182 183 4.613925 TTGCAGCCCAATTTTATTCACA 57.386 36.364 0.00 0.00 0.00 3.58
183 184 5.617529 GCTTTTGCAGCCCAATTTTATTCAC 60.618 40.000 0.00 0.00 43.65 3.18
184 185 4.455190 GCTTTTGCAGCCCAATTTTATTCA 59.545 37.500 0.00 0.00 43.65 2.57
185 186 4.973396 GCTTTTGCAGCCCAATTTTATTC 58.027 39.130 0.00 0.00 43.65 1.75
201 202 9.467258 TCAAGAAATCTCATTAACTTGCTTTTG 57.533 29.630 0.00 0.00 37.05 2.44
202 203 9.688592 CTCAAGAAATCTCATTAACTTGCTTTT 57.311 29.630 0.00 0.00 37.05 2.27
203 204 8.302438 CCTCAAGAAATCTCATTAACTTGCTTT 58.698 33.333 0.00 0.00 37.05 3.51
204 205 7.576477 GCCTCAAGAAATCTCATTAACTTGCTT 60.576 37.037 0.00 0.00 37.05 3.91
205 206 6.127786 GCCTCAAGAAATCTCATTAACTTGCT 60.128 38.462 0.00 0.00 37.05 3.91
206 207 6.032717 GCCTCAAGAAATCTCATTAACTTGC 58.967 40.000 0.00 0.00 37.05 4.01
207 208 7.388460 AGCCTCAAGAAATCTCATTAACTTG 57.612 36.000 0.00 0.00 37.73 3.16
208 209 8.302438 CAAAGCCTCAAGAAATCTCATTAACTT 58.698 33.333 0.00 0.00 0.00 2.66
209 210 7.667219 TCAAAGCCTCAAGAAATCTCATTAACT 59.333 33.333 0.00 0.00 0.00 2.24
210 211 7.820648 TCAAAGCCTCAAGAAATCTCATTAAC 58.179 34.615 0.00 0.00 0.00 2.01
211 212 7.667219 ACTCAAAGCCTCAAGAAATCTCATTAA 59.333 33.333 0.00 0.00 0.00 1.40
212 213 7.120285 CACTCAAAGCCTCAAGAAATCTCATTA 59.880 37.037 0.00 0.00 0.00 1.90
213 214 6.008960 ACTCAAAGCCTCAAGAAATCTCATT 58.991 36.000 0.00 0.00 0.00 2.57
214 215 5.415077 CACTCAAAGCCTCAAGAAATCTCAT 59.585 40.000 0.00 0.00 0.00 2.90
215 216 4.758674 CACTCAAAGCCTCAAGAAATCTCA 59.241 41.667 0.00 0.00 0.00 3.27
216 217 4.379290 GCACTCAAAGCCTCAAGAAATCTC 60.379 45.833 0.00 0.00 0.00 2.75
217 218 3.505293 GCACTCAAAGCCTCAAGAAATCT 59.495 43.478 0.00 0.00 0.00 2.40
218 219 3.669023 CGCACTCAAAGCCTCAAGAAATC 60.669 47.826 0.00 0.00 0.00 2.17
219 220 2.227388 CGCACTCAAAGCCTCAAGAAAT 59.773 45.455 0.00 0.00 0.00 2.17
220 221 1.603802 CGCACTCAAAGCCTCAAGAAA 59.396 47.619 0.00 0.00 0.00 2.52
221 222 1.202639 TCGCACTCAAAGCCTCAAGAA 60.203 47.619 0.00 0.00 0.00 2.52
222 223 0.392706 TCGCACTCAAAGCCTCAAGA 59.607 50.000 0.00 0.00 0.00 3.02
223 224 0.795085 CTCGCACTCAAAGCCTCAAG 59.205 55.000 0.00 0.00 0.00 3.02
224 225 1.230635 GCTCGCACTCAAAGCCTCAA 61.231 55.000 0.00 0.00 0.00 3.02
225 226 1.669115 GCTCGCACTCAAAGCCTCA 60.669 57.895 0.00 0.00 0.00 3.86
226 227 1.375268 AGCTCGCACTCAAAGCCTC 60.375 57.895 0.00 0.00 36.69 4.70
227 228 1.670406 CAGCTCGCACTCAAAGCCT 60.670 57.895 0.00 0.00 36.69 4.58
228 229 1.633852 CTCAGCTCGCACTCAAAGCC 61.634 60.000 0.00 0.00 36.69 4.35
229 230 0.668706 TCTCAGCTCGCACTCAAAGC 60.669 55.000 0.00 0.00 36.27 3.51
230 231 1.659601 CATCTCAGCTCGCACTCAAAG 59.340 52.381 0.00 0.00 0.00 2.77
231 232 1.673923 CCATCTCAGCTCGCACTCAAA 60.674 52.381 0.00 0.00 0.00 2.69
232 233 0.108472 CCATCTCAGCTCGCACTCAA 60.108 55.000 0.00 0.00 0.00 3.02
233 234 1.514553 CCATCTCAGCTCGCACTCA 59.485 57.895 0.00 0.00 0.00 3.41
234 235 1.227205 CCCATCTCAGCTCGCACTC 60.227 63.158 0.00 0.00 0.00 3.51
235 236 2.898738 CCCATCTCAGCTCGCACT 59.101 61.111 0.00 0.00 0.00 4.40
236 237 2.894387 GCCCATCTCAGCTCGCAC 60.894 66.667 0.00 0.00 0.00 5.34
237 238 3.079478 AGCCCATCTCAGCTCGCA 61.079 61.111 0.00 0.00 32.71 5.10
238 239 2.280052 GAGCCCATCTCAGCTCGC 60.280 66.667 0.00 0.00 45.44 5.03
241 242 4.218578 CGCGAGCCCATCTCAGCT 62.219 66.667 0.00 0.00 41.98 4.24
264 265 4.760047 AACTGCACCCCGCGCTAG 62.760 66.667 5.56 0.00 46.97 3.42
265 266 3.835790 AAAACTGCACCCCGCGCTA 62.836 57.895 5.56 0.00 46.97 4.26
267 268 4.700365 GAAAACTGCACCCCGCGC 62.700 66.667 0.00 0.00 46.97 6.86
268 269 4.038080 GGAAAACTGCACCCCGCG 62.038 66.667 0.00 0.00 46.97 6.46
269 270 1.815817 ATTGGAAAACTGCACCCCGC 61.816 55.000 0.00 0.00 42.89 6.13
270 271 0.038343 CATTGGAAAACTGCACCCCG 60.038 55.000 0.00 0.00 0.00 5.73
271 272 1.000843 GACATTGGAAAACTGCACCCC 59.999 52.381 0.00 0.00 0.00 4.95
272 273 1.963515 AGACATTGGAAAACTGCACCC 59.036 47.619 0.00 0.00 0.00 4.61
273 274 2.622942 TCAGACATTGGAAAACTGCACC 59.377 45.455 0.00 0.00 0.00 5.01
274 275 3.988379 TCAGACATTGGAAAACTGCAC 57.012 42.857 0.00 0.00 0.00 4.57
275 276 4.036734 GTCTTCAGACATTGGAAAACTGCA 59.963 41.667 1.86 0.00 44.18 4.41
276 277 4.540824 GTCTTCAGACATTGGAAAACTGC 58.459 43.478 1.86 0.00 44.18 4.40
277 278 4.273480 ACGTCTTCAGACATTGGAAAACTG 59.727 41.667 7.71 0.00 44.99 3.16
278 279 4.273480 CACGTCTTCAGACATTGGAAAACT 59.727 41.667 7.71 0.00 44.99 2.66
279 280 4.527564 CACGTCTTCAGACATTGGAAAAC 58.472 43.478 7.71 0.00 44.99 2.43
280 281 3.003275 GCACGTCTTCAGACATTGGAAAA 59.997 43.478 7.71 0.00 44.99 2.29
281 282 2.548057 GCACGTCTTCAGACATTGGAAA 59.452 45.455 7.71 0.00 44.99 3.13
282 283 2.143122 GCACGTCTTCAGACATTGGAA 58.857 47.619 7.71 0.00 44.99 3.53
283 284 1.344438 AGCACGTCTTCAGACATTGGA 59.656 47.619 7.71 0.00 44.99 3.53
284 285 1.462283 CAGCACGTCTTCAGACATTGG 59.538 52.381 7.71 0.00 44.99 3.16
285 286 2.138320 ACAGCACGTCTTCAGACATTG 58.862 47.619 7.71 4.80 44.99 2.82
286 287 2.533266 ACAGCACGTCTTCAGACATT 57.467 45.000 7.71 0.00 44.99 2.71
287 288 2.533266 AACAGCACGTCTTCAGACAT 57.467 45.000 7.71 0.00 44.99 3.06
288 289 3.005367 TCATAACAGCACGTCTTCAGACA 59.995 43.478 7.71 0.00 44.99 3.41
289 290 3.575630 TCATAACAGCACGTCTTCAGAC 58.424 45.455 0.00 0.00 41.47 3.51
290 291 3.934457 TCATAACAGCACGTCTTCAGA 57.066 42.857 0.00 0.00 0.00 3.27
291 292 3.181540 CGTTCATAACAGCACGTCTTCAG 60.182 47.826 0.00 0.00 0.00 3.02
292 293 2.729360 CGTTCATAACAGCACGTCTTCA 59.271 45.455 0.00 0.00 0.00 3.02
293 294 2.092211 CCGTTCATAACAGCACGTCTTC 59.908 50.000 0.00 0.00 0.00 2.87
294 295 2.066262 CCGTTCATAACAGCACGTCTT 58.934 47.619 0.00 0.00 0.00 3.01
295 296 1.000506 ACCGTTCATAACAGCACGTCT 59.999 47.619 0.00 0.00 0.00 4.18
296 297 1.389106 GACCGTTCATAACAGCACGTC 59.611 52.381 0.00 0.00 0.00 4.34
297 298 1.000506 AGACCGTTCATAACAGCACGT 59.999 47.619 0.00 0.00 0.00 4.49
298 299 1.390123 CAGACCGTTCATAACAGCACG 59.610 52.381 0.00 0.00 0.00 5.34
299 300 1.128692 GCAGACCGTTCATAACAGCAC 59.871 52.381 0.00 0.00 0.00 4.40
300 301 1.270571 TGCAGACCGTTCATAACAGCA 60.271 47.619 0.00 0.00 0.00 4.41
301 302 1.128692 GTGCAGACCGTTCATAACAGC 59.871 52.381 0.00 0.00 0.00 4.40
302 303 2.412870 TGTGCAGACCGTTCATAACAG 58.587 47.619 0.00 0.00 0.00 3.16
303 304 2.535012 TGTGCAGACCGTTCATAACA 57.465 45.000 0.00 0.00 0.00 2.41
304 305 4.403453 GAATTGTGCAGACCGTTCATAAC 58.597 43.478 0.00 0.00 0.00 1.89
305 306 3.124466 CGAATTGTGCAGACCGTTCATAA 59.876 43.478 0.00 0.00 0.00 1.90
306 307 2.670905 CGAATTGTGCAGACCGTTCATA 59.329 45.455 0.00 0.00 0.00 2.15
307 308 1.464608 CGAATTGTGCAGACCGTTCAT 59.535 47.619 0.00 0.00 0.00 2.57
308 309 0.865111 CGAATTGTGCAGACCGTTCA 59.135 50.000 0.00 0.00 0.00 3.18
309 310 0.165944 CCGAATTGTGCAGACCGTTC 59.834 55.000 0.00 0.00 0.00 3.95
310 311 1.852067 GCCGAATTGTGCAGACCGTT 61.852 55.000 0.00 0.00 0.00 4.44
311 312 2.325082 GCCGAATTGTGCAGACCGT 61.325 57.895 0.00 0.00 0.00 4.83
312 313 1.577328 AAGCCGAATTGTGCAGACCG 61.577 55.000 0.00 0.00 0.00 4.79
313 314 0.598065 AAAGCCGAATTGTGCAGACC 59.402 50.000 0.00 0.00 0.00 3.85
314 315 1.537202 AGAAAGCCGAATTGTGCAGAC 59.463 47.619 0.00 0.00 0.00 3.51
315 316 1.896220 AGAAAGCCGAATTGTGCAGA 58.104 45.000 0.00 0.00 0.00 4.26
316 317 2.287788 ACAAGAAAGCCGAATTGTGCAG 60.288 45.455 0.00 0.00 34.71 4.41
317 318 1.680735 ACAAGAAAGCCGAATTGTGCA 59.319 42.857 0.00 0.00 34.71 4.57
318 319 2.053627 CACAAGAAAGCCGAATTGTGC 58.946 47.619 8.84 0.00 44.05 4.57
320 321 4.853924 ATTCACAAGAAAGCCGAATTGT 57.146 36.364 0.00 0.00 37.29 2.71
321 322 5.569059 GTGTATTCACAAGAAAGCCGAATTG 59.431 40.000 0.00 0.00 43.37 2.32
322 323 5.616866 CGTGTATTCACAAGAAAGCCGAATT 60.617 40.000 3.25 0.00 44.02 2.17
323 324 4.142902 CGTGTATTCACAAGAAAGCCGAAT 60.143 41.667 3.25 0.00 44.02 3.34
324 325 3.185594 CGTGTATTCACAAGAAAGCCGAA 59.814 43.478 3.25 0.00 44.02 4.30
325 326 2.734606 CGTGTATTCACAAGAAAGCCGA 59.265 45.455 3.25 0.00 44.02 5.54
326 327 2.478894 ACGTGTATTCACAAGAAAGCCG 59.521 45.455 3.25 0.00 44.02 5.52
327 328 3.496884 TCACGTGTATTCACAAGAAAGCC 59.503 43.478 16.51 0.00 44.02 4.35
328 329 4.455124 GTCACGTGTATTCACAAGAAAGC 58.545 43.478 16.51 0.00 44.02 3.51
329 330 4.376008 CCGTCACGTGTATTCACAAGAAAG 60.376 45.833 16.51 0.00 44.02 2.62
330 331 3.491639 CCGTCACGTGTATTCACAAGAAA 59.508 43.478 16.51 0.00 44.02 2.52
331 332 3.054166 CCGTCACGTGTATTCACAAGAA 58.946 45.455 16.51 0.00 44.02 2.52
332 333 2.668250 CCGTCACGTGTATTCACAAGA 58.332 47.619 16.51 0.00 44.02 3.02
333 334 1.126113 GCCGTCACGTGTATTCACAAG 59.874 52.381 16.51 1.56 44.02 3.16
334 335 1.141645 GCCGTCACGTGTATTCACAA 58.858 50.000 16.51 0.00 44.02 3.33
335 336 0.315886 AGCCGTCACGTGTATTCACA 59.684 50.000 16.51 0.00 44.02 3.58
336 337 0.713883 CAGCCGTCACGTGTATTCAC 59.286 55.000 16.51 4.77 40.79 3.18
337 338 0.315886 ACAGCCGTCACGTGTATTCA 59.684 50.000 16.51 0.00 0.00 2.57
338 339 0.989890 GACAGCCGTCACGTGTATTC 59.010 55.000 16.51 4.10 42.13 1.75
339 340 0.601558 AGACAGCCGTCACGTGTATT 59.398 50.000 16.51 0.00 45.23 1.89
340 341 0.170561 GAGACAGCCGTCACGTGTAT 59.829 55.000 16.51 0.00 45.23 2.29
341 342 1.577922 GAGACAGCCGTCACGTGTA 59.422 57.895 16.51 0.00 45.23 2.90
342 343 2.335369 GAGACAGCCGTCACGTGT 59.665 61.111 16.51 0.00 45.23 4.49
343 344 2.801162 CGAGACAGCCGTCACGTG 60.801 66.667 9.94 9.94 46.87 4.49
346 347 2.807045 CAGCGAGACAGCCGTCAC 60.807 66.667 2.32 0.00 45.23 3.67
347 348 4.056125 CCAGCGAGACAGCCGTCA 62.056 66.667 2.32 0.00 45.23 4.35
348 349 3.575351 AACCAGCGAGACAGCCGTC 62.575 63.158 0.00 0.00 42.95 4.79
349 350 3.575351 GAACCAGCGAGACAGCCGT 62.575 63.158 0.00 0.00 38.01 5.68
350 351 2.811317 GAACCAGCGAGACAGCCG 60.811 66.667 0.00 0.00 38.01 5.52
351 352 1.739562 CAGAACCAGCGAGACAGCC 60.740 63.158 0.00 0.00 38.01 4.85
352 353 1.739562 CCAGAACCAGCGAGACAGC 60.740 63.158 0.00 0.00 37.41 4.40
353 354 1.739562 GCCAGAACCAGCGAGACAG 60.740 63.158 0.00 0.00 0.00 3.51
364 365 1.869690 GCCAAGAAGTCGCCAGAAC 59.130 57.895 0.00 0.00 0.00 3.01
384 385 0.110056 GACGAGGTCGCGTACAAAGA 60.110 55.000 5.77 0.00 45.72 2.52
396 397 2.317230 CAAAAGTTGCCGACGAGGT 58.683 52.632 0.00 0.00 43.70 3.85
406 407 2.403259 GGGATTGAACGGCAAAAGTTG 58.597 47.619 0.00 0.00 40.48 3.16
410 411 1.548269 GATGGGGATTGAACGGCAAAA 59.452 47.619 0.00 0.00 40.48 2.44
411 412 1.181786 GATGGGGATTGAACGGCAAA 58.818 50.000 0.00 0.00 40.48 3.68
418 419 3.271755 TGGAAGATTGGATGGGGATTGAA 59.728 43.478 0.00 0.00 0.00 2.69
430 431 5.063312 GTGTGTTTGTTTTGTGGAAGATTGG 59.937 40.000 0.00 0.00 0.00 3.16
432 433 5.788450 TGTGTGTTTGTTTTGTGGAAGATT 58.212 33.333 0.00 0.00 0.00 2.40
433 434 5.398603 TGTGTGTTTGTTTTGTGGAAGAT 57.601 34.783 0.00 0.00 0.00 2.40
435 436 4.747108 TGTTGTGTGTTTGTTTTGTGGAAG 59.253 37.500 0.00 0.00 0.00 3.46
442 443 8.785329 AATTAGGATTGTTGTGTGTTTGTTTT 57.215 26.923 0.00 0.00 0.00 2.43
454 455 6.127338 GGGAGGAAAAGGAATTAGGATTGTTG 60.127 42.308 0.00 0.00 0.00 3.33
457 458 5.518865 TGGGAGGAAAAGGAATTAGGATTG 58.481 41.667 0.00 0.00 0.00 2.67
458 459 5.813965 TGGGAGGAAAAGGAATTAGGATT 57.186 39.130 0.00 0.00 0.00 3.01
459 460 5.678672 AGATGGGAGGAAAAGGAATTAGGAT 59.321 40.000 0.00 0.00 0.00 3.24
460 461 5.046522 AGATGGGAGGAAAAGGAATTAGGA 58.953 41.667 0.00 0.00 0.00 2.94
464 465 5.733647 ACTCTAGATGGGAGGAAAAGGAATT 59.266 40.000 0.00 0.00 35.34 2.17
469 470 7.610580 ATTAGACTCTAGATGGGAGGAAAAG 57.389 40.000 0.00 0.00 35.34 2.27
470 471 7.071321 GGAATTAGACTCTAGATGGGAGGAAAA 59.929 40.741 0.00 0.00 35.34 2.29
471 472 6.555360 GGAATTAGACTCTAGATGGGAGGAAA 59.445 42.308 0.00 0.00 35.34 3.13
475 476 6.074648 ACTGGAATTAGACTCTAGATGGGAG 58.925 44.000 0.00 0.00 36.92 4.30
476 477 6.031964 ACTGGAATTAGACTCTAGATGGGA 57.968 41.667 0.00 0.00 0.00 4.37
477 478 5.245075 GGACTGGAATTAGACTCTAGATGGG 59.755 48.000 0.00 0.00 0.00 4.00
484 485 7.450323 GCTAGAATAGGACTGGAATTAGACTCT 59.550 40.741 0.00 0.00 39.70 3.24
486 487 6.207810 CGCTAGAATAGGACTGGAATTAGACT 59.792 42.308 0.00 0.00 39.70 3.24
488 489 6.304624 TCGCTAGAATAGGACTGGAATTAGA 58.695 40.000 0.00 0.00 39.70 2.10
489 490 6.576662 TCGCTAGAATAGGACTGGAATTAG 57.423 41.667 0.00 0.00 39.70 1.73
503 505 4.991153 TCACTCTCACAATCGCTAGAAT 57.009 40.909 0.00 0.00 0.00 2.40
504 506 4.022329 TGTTCACTCTCACAATCGCTAGAA 60.022 41.667 0.00 0.00 0.00 2.10
505 507 3.506067 TGTTCACTCTCACAATCGCTAGA 59.494 43.478 0.00 0.00 0.00 2.43
507 509 3.506067 TCTGTTCACTCTCACAATCGCTA 59.494 43.478 0.00 0.00 0.00 4.26
511 513 5.718146 TCAGATCTGTTCACTCTCACAATC 58.282 41.667 21.92 0.00 0.00 2.67
513 515 4.586421 ACTCAGATCTGTTCACTCTCACAA 59.414 41.667 21.92 0.00 0.00 3.33
522 524 6.875726 CACTTATTCCAACTCAGATCTGTTCA 59.124 38.462 21.92 2.46 0.00 3.18
523 525 7.099764 TCACTTATTCCAACTCAGATCTGTTC 58.900 38.462 21.92 0.00 0.00 3.18
524 526 7.009179 TCACTTATTCCAACTCAGATCTGTT 57.991 36.000 21.92 7.66 0.00 3.16
525 527 6.212388 ACTCACTTATTCCAACTCAGATCTGT 59.788 38.462 21.92 0.90 0.00 3.41
532 537 4.838423 TCCTCACTCACTTATTCCAACTCA 59.162 41.667 0.00 0.00 0.00 3.41
535 540 5.305585 TGTTCCTCACTCACTTATTCCAAC 58.694 41.667 0.00 0.00 0.00 3.77
538 543 5.407407 TCTGTTCCTCACTCACTTATTCC 57.593 43.478 0.00 0.00 0.00 3.01
542 547 4.899457 TCCTTTCTGTTCCTCACTCACTTA 59.101 41.667 0.00 0.00 0.00 2.24
545 550 3.753294 TCCTTTCTGTTCCTCACTCAC 57.247 47.619 0.00 0.00 0.00 3.51
546 551 4.982241 AATCCTTTCTGTTCCTCACTCA 57.018 40.909 0.00 0.00 0.00 3.41
547 552 5.308825 TGAAATCCTTTCTGTTCCTCACTC 58.691 41.667 1.74 0.00 40.32 3.51
548 553 5.310409 TGAAATCCTTTCTGTTCCTCACT 57.690 39.130 1.74 0.00 40.32 3.41
557 562 4.330250 TCTTGCTCCTGAAATCCTTTCTG 58.670 43.478 1.74 1.33 40.32 3.02
561 566 4.525024 CAGATCTTGCTCCTGAAATCCTT 58.475 43.478 0.00 0.00 0.00 3.36
569 574 1.002888 ACACACCAGATCTTGCTCCTG 59.997 52.381 0.00 0.00 0.00 3.86
570 575 1.002888 CACACACCAGATCTTGCTCCT 59.997 52.381 0.00 0.00 0.00 3.69
577 582 1.004560 CGCCACACACACCAGATCT 60.005 57.895 0.00 0.00 0.00 2.75
579 584 1.301716 GTCGCCACACACACCAGAT 60.302 57.895 0.00 0.00 0.00 2.90
581 586 3.337889 CGTCGCCACACACACCAG 61.338 66.667 0.00 0.00 0.00 4.00
593 598 4.520846 CAAATCTGCCGCCGTCGC 62.521 66.667 0.00 0.00 0.00 5.19
594 599 3.864686 CCAAATCTGCCGCCGTCG 61.865 66.667 0.00 0.00 0.00 5.12
595 600 3.508840 CCCAAATCTGCCGCCGTC 61.509 66.667 0.00 0.00 0.00 4.79
602 607 0.815615 CTCTACGCCCCCAAATCTGC 60.816 60.000 0.00 0.00 0.00 4.26
612 617 3.851128 GCAGTCCCCTCTACGCCC 61.851 72.222 0.00 0.00 0.00 6.13
616 621 2.128507 CCCGAGCAGTCCCCTCTAC 61.129 68.421 0.00 0.00 0.00 2.59
618 623 3.670629 CTCCCGAGCAGTCCCCTCT 62.671 68.421 0.00 0.00 0.00 3.69
619 624 3.151022 CTCCCGAGCAGTCCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
625 630 1.837051 TTCACCACTCCCGAGCAGT 60.837 57.895 0.00 0.00 0.00 4.40
630 635 2.122769 TGGGTTCACCACTCCCGA 60.123 61.111 0.00 0.00 46.80 5.14
631 636 2.347490 CTGGGTTCACCACTCCCG 59.653 66.667 0.00 0.00 46.80 5.14
632 637 2.034221 GCTGGGTTCACCACTCCC 59.966 66.667 0.00 0.00 46.80 4.30
640 645 2.853542 TGGGAGCAGCTGGGTTCA 60.854 61.111 17.12 2.69 0.00 3.18
641 646 2.045536 CTGGGAGCAGCTGGGTTC 60.046 66.667 17.12 0.00 0.00 3.62
642 647 4.357279 GCTGGGAGCAGCTGGGTT 62.357 66.667 17.12 0.00 44.31 4.11
650 655 2.361992 CCATTGCAGCTGGGAGCA 60.362 61.111 17.12 3.72 45.56 4.26
681 686 4.290942 CCTTCACTCCTCCAAGGTATACT 58.709 47.826 2.25 0.00 36.53 2.12
683 688 3.654273 CCCTTCACTCCTCCAAGGTATA 58.346 50.000 0.00 0.00 35.77 1.47
692 697 0.392327 GAGCTTGCCCTTCACTCCTC 60.392 60.000 0.00 0.00 0.00 3.71
705 710 2.085320 AGCTGCAGATTCTTGAGCTTG 58.915 47.619 20.43 0.00 36.60 4.01
708 713 2.807392 GGATAGCTGCAGATTCTTGAGC 59.193 50.000 20.43 0.00 0.00 4.26
729 734 1.153549 CCCCTTCTTCTCCGCTTCG 60.154 63.158 0.00 0.00 0.00 3.79
752 757 1.927487 TGCATGTTTCCTGCCAATCT 58.073 45.000 0.00 0.00 38.89 2.40
781 786 0.537188 GCCTGTAGCTTGCTCACCTA 59.463 55.000 0.00 0.00 38.99 3.08
855 860 2.024273 TGGACTCCAGACTACCCCTAAG 60.024 54.545 0.00 0.00 0.00 2.18
879 889 3.259123 GGTCTTTGCATTCCACTCCAAAT 59.741 43.478 0.00 0.00 0.00 2.32
885 895 1.548582 CCCAGGTCTTTGCATTCCACT 60.549 52.381 0.00 0.00 0.00 4.00
900 910 3.056607 ACAAAAATCGATTTCTGCCCAGG 60.057 43.478 22.93 9.37 0.00 4.45
919 929 7.491048 GTCAGCTCTTTGTTGGAAAATAAACAA 59.509 33.333 0.00 0.00 42.82 2.83
921 931 6.978080 TGTCAGCTCTTTGTTGGAAAATAAAC 59.022 34.615 0.00 0.00 0.00 2.01
938 948 2.620585 AGTGCTTTTTCCTTGTCAGCTC 59.379 45.455 0.00 0.00 0.00 4.09
939 949 2.659428 AGTGCTTTTTCCTTGTCAGCT 58.341 42.857 0.00 0.00 0.00 4.24
1046 1056 5.705905 GCTCTTACCCATATTGGTATTGTCC 59.294 44.000 6.53 0.00 40.49 4.02
1056 1066 3.616560 CGCCATACGCTCTTACCCATATT 60.617 47.826 0.00 0.00 34.21 1.28
1108 1119 7.559170 CCCAATTTGTTCTCCTATCAAATCTCT 59.441 37.037 0.00 0.00 39.72 3.10
1116 1127 6.659242 TGACTTTCCCAATTTGTTCTCCTATC 59.341 38.462 0.00 0.00 0.00 2.08
1117 1128 6.552008 TGACTTTCCCAATTTGTTCTCCTAT 58.448 36.000 0.00 0.00 0.00 2.57
1134 1145 5.734720 TCTGGGTCTACATCAATGACTTTC 58.265 41.667 0.00 0.00 0.00 2.62
1135 1146 5.762179 TCTGGGTCTACATCAATGACTTT 57.238 39.130 0.00 0.00 0.00 2.66
1140 1151 7.012704 CCACTAATTTCTGGGTCTACATCAATG 59.987 40.741 0.00 0.00 0.00 2.82
1158 1169 5.132648 TGCTCCCATAGAATCACCACTAATT 59.867 40.000 0.00 0.00 0.00 1.40
1215 1226 6.629128 TGTTACAAACCTCATAATTGGCATG 58.371 36.000 0.00 0.00 0.00 4.06
1216 1227 6.849085 TGTTACAAACCTCATAATTGGCAT 57.151 33.333 0.00 0.00 0.00 4.40
1218 1229 7.100458 AGATGTTACAAACCTCATAATTGGC 57.900 36.000 0.00 0.00 0.00 4.52
1234 1245 8.420374 TCCTCATCGTCAATAAAAGATGTTAC 57.580 34.615 4.53 0.00 40.75 2.50
1280 1291 6.084060 TCATCATCTCCCACAGGTATCATTA 58.916 40.000 0.00 0.00 0.00 1.90
1289 1300 2.675583 TCTCCTCATCATCTCCCACAG 58.324 52.381 0.00 0.00 0.00 3.66
1310 1321 9.589461 TTTCTCTCTTCTTTCTCCTTAGTTCTA 57.411 33.333 0.00 0.00 0.00 2.10
1315 1330 7.846066 TCCATTTCTCTCTTCTTTCTCCTTAG 58.154 38.462 0.00 0.00 0.00 2.18
1320 1335 6.293004 TCCTCCATTTCTCTCTTCTTTCTC 57.707 41.667 0.00 0.00 0.00 2.87
1321 1336 6.694445 TTCCTCCATTTCTCTCTTCTTTCT 57.306 37.500 0.00 0.00 0.00 2.52
1347 1362 5.407407 ACTCGTATGTGAAGGAGACAATT 57.593 39.130 0.99 0.00 35.75 2.32
1377 1392 1.001293 CCACAGCTGTAGCAGAAGTCA 59.999 52.381 21.20 0.00 45.16 3.41
1389 1404 5.824624 AGTATGTCCAATAATTCCACAGCTG 59.175 40.000 13.48 13.48 0.00 4.24
1419 1434 3.833732 TCTAGATCTAGTTGGGCGTGAT 58.166 45.455 25.54 0.00 34.84 3.06
1423 1438 4.098044 TGTTCTTCTAGATCTAGTTGGGCG 59.902 45.833 25.54 11.24 34.84 6.13
1485 1500 0.895530 CACTCGAGCTCCCCTTGTAA 59.104 55.000 13.61 0.00 0.00 2.41
1500 1515 4.893829 ACCCCTACTTCTTTCTTCACTC 57.106 45.455 0.00 0.00 0.00 3.51
1576 1591 0.107165 GGCCCATCACTACCTTGTCC 60.107 60.000 0.00 0.00 0.00 4.02
1584 1599 2.717044 CCACGACGGCCCATCACTA 61.717 63.158 0.00 0.00 0.00 2.74
1620 1635 1.769026 CTCCTTCCTCGTCATCTCCA 58.231 55.000 0.00 0.00 0.00 3.86
1629 1644 0.972983 TCCTTCCTGCTCCTTCCTCG 60.973 60.000 0.00 0.00 0.00 4.63
1639 1654 2.568623 TTTCCTTCACTCCTTCCTGC 57.431 50.000 0.00 0.00 0.00 4.85
1675 1690 2.400399 CTCACACTCCTTTAACGCGAA 58.600 47.619 15.93 0.00 0.00 4.70
1678 1693 2.067013 GTCCTCACACTCCTTTAACGC 58.933 52.381 0.00 0.00 0.00 4.84
1679 1694 2.036733 TGGTCCTCACACTCCTTTAACG 59.963 50.000 0.00 0.00 0.00 3.18
1686 1701 0.610687 CTCCTTGGTCCTCACACTCC 59.389 60.000 0.00 0.00 0.00 3.85
1706 1721 3.110705 TCCAATCTCTTTCTCTCCCCTG 58.889 50.000 0.00 0.00 0.00 4.45
1714 1729 5.165961 TCGTTGGAATCCAATCTCTTTCT 57.834 39.130 18.63 0.00 45.80 2.52
1716 1731 6.648879 TTTTCGTTGGAATCCAATCTCTTT 57.351 33.333 18.63 0.00 45.80 2.52
1719 1734 5.858581 CACTTTTTCGTTGGAATCCAATCTC 59.141 40.000 18.63 4.52 45.80 2.75
1723 1738 3.702045 ACCACTTTTTCGTTGGAATCCAA 59.298 39.130 11.23 11.23 41.69 3.53
1729 1744 5.026038 TCTTCTACCACTTTTTCGTTGGA 57.974 39.130 0.00 0.00 0.00 3.53
1730 1745 4.319549 GCTCTTCTACCACTTTTTCGTTGG 60.320 45.833 0.00 0.00 0.00 3.77
1733 1748 3.400255 GGCTCTTCTACCACTTTTTCGT 58.600 45.455 0.00 0.00 0.00 3.85
1735 1750 4.004314 GAGGGCTCTTCTACCACTTTTTC 58.996 47.826 0.00 0.00 0.00 2.29
1736 1751 3.653352 AGAGGGCTCTTCTACCACTTTTT 59.347 43.478 0.00 0.00 36.31 1.94
1739 1754 2.632763 AGAGGGCTCTTCTACCACTT 57.367 50.000 0.00 0.00 36.31 3.16
1744 1759 4.538738 TCCTTTCTAGAGGGCTCTTCTAC 58.461 47.826 8.46 0.00 40.93 2.59
1747 1762 3.515901 TGTTCCTTTCTAGAGGGCTCTTC 59.484 47.826 8.46 0.00 40.93 2.87
1752 1767 3.502595 GTGTTTGTTCCTTTCTAGAGGGC 59.497 47.826 8.46 0.00 37.41 5.19
1759 1774 4.799564 TTGCAAGTGTTTGTTCCTTTCT 57.200 36.364 0.00 0.00 36.65 2.52
1772 1787 5.277058 GCCTTACTCGATTCTATTGCAAGTG 60.277 44.000 4.94 0.00 0.00 3.16
1778 1793 4.238761 TCGGCCTTACTCGATTCTATTG 57.761 45.455 0.00 0.00 0.00 1.90
1797 1812 5.929992 TGTGGTAGTGTTATTTTCCTCTTCG 59.070 40.000 0.00 0.00 0.00 3.79
1804 1819 7.995463 TTGCTTTTGTGGTAGTGTTATTTTC 57.005 32.000 0.00 0.00 0.00 2.29
1806 1821 7.381139 CGATTTGCTTTTGTGGTAGTGTTATTT 59.619 33.333 0.00 0.00 0.00 1.40
1830 1845 1.265635 CCGCATCCTTTTGAAACACGA 59.734 47.619 0.00 0.00 0.00 4.35
1832 1847 2.034053 TGACCGCATCCTTTTGAAACAC 59.966 45.455 0.00 0.00 0.00 3.32
1847 1862 1.327764 GATTGATCTCCGTTTGACCGC 59.672 52.381 0.00 0.00 0.00 5.68
1848 1863 2.616960 TGATTGATCTCCGTTTGACCG 58.383 47.619 0.00 0.00 0.00 4.79
1858 1873 5.566774 CGTTGCTTTCTTGTTGATTGATCTC 59.433 40.000 0.00 0.00 0.00 2.75
1865 1880 7.199766 TGTTATTTCGTTGCTTTCTTGTTGAT 58.800 30.769 0.00 0.00 0.00 2.57
1867 1882 6.804534 TGTTATTTCGTTGCTTTCTTGTTG 57.195 33.333 0.00 0.00 0.00 3.33
1877 1892 8.722342 TTCTACTTGATTTGTTATTTCGTTGC 57.278 30.769 0.00 0.00 0.00 4.17
1881 1896 7.480542 CCCGTTTCTACTTGATTTGTTATTTCG 59.519 37.037 0.00 0.00 0.00 3.46
1884 1899 6.943718 TCCCCGTTTCTACTTGATTTGTTATT 59.056 34.615 0.00 0.00 0.00 1.40
1904 1919 0.107456 CATCTTCATCCCTGTCCCCG 59.893 60.000 0.00 0.00 0.00 5.73
1907 1922 2.774234 TCCTTCATCTTCATCCCTGTCC 59.226 50.000 0.00 0.00 0.00 4.02
1909 1924 5.463051 AATTCCTTCATCTTCATCCCTGT 57.537 39.130 0.00 0.00 0.00 4.00
1910 1925 6.359804 TGTAATTCCTTCATCTTCATCCCTG 58.640 40.000 0.00 0.00 0.00 4.45
1913 1928 8.511604 TTTCTGTAATTCCTTCATCTTCATCC 57.488 34.615 0.00 0.00 0.00 3.51
1922 1937 7.953005 TTGGCATATTTCTGTAATTCCTTCA 57.047 32.000 0.00 0.00 0.00 3.02
1931 1946 6.318648 GTCACCTTCATTGGCATATTTCTGTA 59.681 38.462 0.00 0.00 0.00 2.74
1964 1980 5.124036 TGTTCTTCCCTTCTTCTTTTCCA 57.876 39.130 0.00 0.00 0.00 3.53
2004 2020 5.294552 AGTTTGTGCTTTATTCGCTCTATCC 59.705 40.000 0.00 0.00 0.00 2.59
2012 2028 5.747565 TCACTTGAGTTTGTGCTTTATTCG 58.252 37.500 0.00 0.00 34.49 3.34
2016 2032 7.592938 CCATATTCACTTGAGTTTGTGCTTTA 58.407 34.615 0.00 0.00 34.49 1.85
2017 2033 6.449698 CCATATTCACTTGAGTTTGTGCTTT 58.550 36.000 0.00 0.00 34.49 3.51
2019 2035 4.082571 GCCATATTCACTTGAGTTTGTGCT 60.083 41.667 0.00 0.00 34.49 4.40
2020 2036 4.168760 GCCATATTCACTTGAGTTTGTGC 58.831 43.478 0.00 0.00 34.49 4.57
2034 2050 3.696051 TCTTTGCTTCTGTGGCCATATTC 59.304 43.478 9.72 0.00 0.00 1.75
2050 2066 1.370900 CTGCACCACGCTTCTTTGC 60.371 57.895 0.00 0.00 43.06 3.68
2072 2088 4.806892 TGGCTCCATGTCAATTTCCATAT 58.193 39.130 0.00 0.00 0.00 1.78
2085 2101 0.900421 TCTCAGTGACTGGCTCCATG 59.100 55.000 13.33 0.00 31.51 3.66
2086 2102 1.649321 TTCTCAGTGACTGGCTCCAT 58.351 50.000 13.33 0.00 31.51 3.41
2099 2115 9.837525 CTACTTCCATTTTCATCTTTTTCTCAG 57.162 33.333 0.00 0.00 0.00 3.35
2100 2116 9.573166 TCTACTTCCATTTTCATCTTTTTCTCA 57.427 29.630 0.00 0.00 0.00 3.27
2121 2137 4.519350 TCGATCGTGGCATTTATCTCTACT 59.481 41.667 15.94 0.00 0.00 2.57
2136 2152 2.099921 AGTTCTCCCTTCATCGATCGTG 59.900 50.000 15.94 12.61 0.00 4.35
2138 2154 2.544694 CCAGTTCTCCCTTCATCGATCG 60.545 54.545 9.36 9.36 0.00 3.69
2141 2157 1.195115 CCCAGTTCTCCCTTCATCGA 58.805 55.000 0.00 0.00 0.00 3.59
2142 2158 0.179000 CCCCAGTTCTCCCTTCATCG 59.821 60.000 0.00 0.00 0.00 3.84
2144 2160 1.918957 CTTCCCCAGTTCTCCCTTCAT 59.081 52.381 0.00 0.00 0.00 2.57
2154 2170 2.990740 TGGTATTTGCTTCCCCAGTT 57.009 45.000 0.00 0.00 0.00 3.16
2215 2231 4.796495 GGCCTCGCGGGATTGGTT 62.796 66.667 8.08 0.00 37.23 3.67
2227 2243 1.303309 CGTGATCCTCATTTGGCCTC 58.697 55.000 3.32 0.00 0.00 4.70
2233 2249 1.281867 TCCAAGCCGTGATCCTCATTT 59.718 47.619 0.00 0.00 0.00 2.32
2303 2319 2.270527 GGGTCCTCCTGCTTCTGC 59.729 66.667 0.00 0.00 40.20 4.26
2402 2418 0.962489 CTTCACAGTCCCTCGTCACT 59.038 55.000 0.00 0.00 0.00 3.41
2407 2423 2.543777 TTTTCCTTCACAGTCCCTCG 57.456 50.000 0.00 0.00 0.00 4.63
2432 2448 1.289160 TCCATAAGAGTGCAAGGCCT 58.711 50.000 0.00 0.00 0.00 5.19
2444 2460 9.618890 TCCACTTGAATATCTTTCTTCCATAAG 57.381 33.333 0.00 0.00 0.00 1.73
2445 2461 9.973661 TTCCACTTGAATATCTTTCTTCCATAA 57.026 29.630 0.00 0.00 0.00 1.90
2483 2499 8.530804 TCACCACATCTATATGATATCTGGAG 57.469 38.462 3.98 0.00 36.54 3.86
2512 2528 4.080695 TCCATCTGAAACCATCTCCTTCAG 60.081 45.833 4.96 4.96 44.85 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.