Multiple sequence alignment - TraesCS2A01G399200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G399200 chr2A 100.000 5419 0 0 1 5419 652337616 652332198 0.000000e+00 10008
1 TraesCS2A01G399200 chr2B 95.761 2123 73 8 1342 3454 596655876 596653761 0.000000e+00 3406
2 TraesCS2A01G399200 chr2B 89.818 1925 84 39 3500 5348 596653743 596651855 0.000000e+00 2366
3 TraesCS2A01G399200 chr2B 93.043 1308 65 15 63 1354 596657195 596655898 0.000000e+00 1888
4 TraesCS2A01G399200 chr2D 95.828 1678 60 6 1342 3014 507832024 507830352 0.000000e+00 2702
5 TraesCS2A01G399200 chr2D 91.793 1450 72 19 3936 5348 507828958 507827519 0.000000e+00 1975
6 TraesCS2A01G399200 chr2D 90.659 1092 60 16 1 1074 507834051 507832984 0.000000e+00 1413
7 TraesCS2A01G399200 chr2D 92.410 751 41 11 3038 3773 507830359 507829610 0.000000e+00 1057
8 TraesCS2A01G399200 chr2D 91.608 286 19 3 1073 1354 507832330 507832046 1.830000e-104 390
9 TraesCS2A01G399200 chr6A 81.091 275 48 3 2574 2846 479622956 479623228 3.290000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G399200 chr2A 652332198 652337616 5418 True 10008.000000 10008 100.0000 1 5419 1 chr2A.!!$R1 5418
1 TraesCS2A01G399200 chr2B 596651855 596657195 5340 True 2553.333333 3406 92.8740 63 5348 3 chr2B.!!$R1 5285
2 TraesCS2A01G399200 chr2D 507827519 507834051 6532 True 1507.400000 2702 92.4596 1 5348 5 chr2D.!!$R1 5347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 309 0.391661 ACTGGCTTGATGTAGGTGCG 60.392 55.000 0.0 0.0 0.00 5.34 F
562 573 0.404040 GACCCTTGGGTGGTGAATGA 59.596 55.000 17.1 0.0 35.85 2.57 F
708 722 1.197492 TGCTGAATCGTGTGAATGCAC 59.803 47.619 0.0 0.0 45.35 4.57 F
2424 3151 0.036010 CAGTTCTCCTGATTGGCCGT 60.036 55.000 0.0 0.0 44.49 5.68 F
3022 3761 0.992072 CGATAACAGTGTGTGCTCCG 59.008 55.000 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2737 1.189446 GCGTGTGTGAGTTTCTGTACG 59.811 52.381 0.00 0.00 0.00 3.67 R
2274 3001 1.594331 AAACCGAAGAGAACACCTGC 58.406 50.000 0.00 0.00 0.00 4.85 R
2642 3378 1.073897 GAACCCTGCAGAGGCTTGT 59.926 57.895 17.39 1.46 41.91 3.16 R
3664 4420 0.098728 CTAAAAAGATGGCCACGGCG 59.901 55.000 8.16 4.80 43.06 6.46 R
4965 6285 0.955919 CTCTTCCCTGTTTGGTCGCC 60.956 60.000 0.00 0.00 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 60 3.347216 CCCCATGATTGATTCCGTATCC 58.653 50.000 0.00 0.00 31.87 2.59
237 243 0.539986 GGCAGATCCGTCCCAACTTA 59.460 55.000 0.00 0.00 0.00 2.24
289 295 6.346678 GCGCTCTGTTAATACTTAATACTGGC 60.347 42.308 0.00 0.00 0.00 4.85
303 309 0.391661 ACTGGCTTGATGTAGGTGCG 60.392 55.000 0.00 0.00 0.00 5.34
379 389 4.020128 CAGCAGACTAAAAGTTACCCCTCT 60.020 45.833 0.00 0.00 0.00 3.69
390 400 4.282496 AGTTACCCCTCTAGTGACTCATG 58.718 47.826 0.00 0.00 28.75 3.07
391 401 2.166907 ACCCCTCTAGTGACTCATGG 57.833 55.000 0.00 0.00 0.00 3.66
395 405 3.570540 CCCTCTAGTGACTCATGGATCA 58.429 50.000 0.00 0.00 0.00 2.92
418 428 3.921677 TCTCGACACCACAATTAACCTC 58.078 45.455 0.00 0.00 0.00 3.85
422 432 3.146066 GACACCACAATTAACCTCTGCA 58.854 45.455 0.00 0.00 0.00 4.41
437 447 3.118112 CCTCTGCAATCCTCCTAACATGT 60.118 47.826 0.00 0.00 0.00 3.21
441 451 4.769688 TGCAATCCTCCTAACATGTAGTG 58.230 43.478 0.00 0.00 0.00 2.74
442 452 4.130118 GCAATCCTCCTAACATGTAGTGG 58.870 47.826 0.00 1.83 0.00 4.00
472 482 7.654022 TTTTTCCTCAGTTATTTGTTCACCT 57.346 32.000 0.00 0.00 0.00 4.00
507 517 4.213059 CAGAAGCTTTGTTCTCCTTGAGAC 59.787 45.833 0.00 0.00 38.51 3.36
528 539 6.990798 AGACCTACTGTTAAAAGTACTCACC 58.009 40.000 1.04 0.00 0.00 4.02
542 553 1.227704 TCACCGTGTGCCGTGAATT 60.228 52.632 0.00 0.00 32.98 2.17
551 562 0.893270 TGCCGTGAATTGACCCTTGG 60.893 55.000 0.00 0.00 0.00 3.61
554 565 0.881118 CGTGAATTGACCCTTGGGTG 59.119 55.000 17.10 0.00 0.00 4.61
562 573 0.404040 GACCCTTGGGTGGTGAATGA 59.596 55.000 17.10 0.00 35.85 2.57
572 583 4.163078 TGGGTGGTGAATGACAAAATTGTT 59.837 37.500 0.00 0.00 42.43 2.83
584 595 8.761575 ATGACAAAATTGTTATGGTGAATGAC 57.238 30.769 3.10 0.00 42.43 3.06
586 597 6.976088 ACAAAATTGTTATGGTGAATGACGA 58.024 32.000 0.00 0.00 38.47 4.20
620 634 4.582869 AGTGGACGGTTCCCTAAATTTAC 58.417 43.478 0.00 0.00 42.01 2.01
660 674 4.752146 ACGGGTAGAGTGTGCTAAATAAC 58.248 43.478 0.00 0.00 0.00 1.89
702 716 7.784633 TTGATTATAATGCTGAATCGTGTGA 57.215 32.000 1.78 0.00 33.18 3.58
703 717 7.784633 TGATTATAATGCTGAATCGTGTGAA 57.215 32.000 1.78 0.00 33.18 3.18
704 718 8.382030 TGATTATAATGCTGAATCGTGTGAAT 57.618 30.769 1.78 0.00 33.18 2.57
705 719 8.284693 TGATTATAATGCTGAATCGTGTGAATG 58.715 33.333 1.78 0.00 33.18 2.67
706 720 2.838386 ATGCTGAATCGTGTGAATGC 57.162 45.000 0.00 0.00 0.00 3.56
707 721 1.521580 TGCTGAATCGTGTGAATGCA 58.478 45.000 0.00 0.00 0.00 3.96
708 722 1.197492 TGCTGAATCGTGTGAATGCAC 59.803 47.619 0.00 0.00 45.35 4.57
729 759 5.572896 GCACACTGTTTATTGGCTAAATCAC 59.427 40.000 0.00 0.00 32.12 3.06
730 760 6.570378 GCACACTGTTTATTGGCTAAATCACT 60.570 38.462 0.00 0.00 32.12 3.41
932 967 2.308570 TCATACTGCCTTTGTGATGGGT 59.691 45.455 0.00 0.00 0.00 4.51
1066 1101 4.553330 TGGAAAGGGTATGTCTGTCTTC 57.447 45.455 0.00 0.00 0.00 2.87
1080 1770 4.271291 GTCTGTCTTCAAGTCCTTCACAAC 59.729 45.833 0.00 0.00 0.00 3.32
1334 2027 8.190326 TGTTCATTTGGTCTATCGTATCCTAT 57.810 34.615 0.00 0.00 0.00 2.57
1410 2137 1.473258 TTCTGCTGCAACAACAAGGT 58.527 45.000 3.02 0.00 0.00 3.50
1527 2254 7.487822 TTACAGAGATGTTGGAAGAGATCTT 57.512 36.000 0.00 0.00 39.23 2.40
1904 2631 6.312918 AGTTGTACTGCAGGTAATGTATTTCG 59.687 38.462 19.93 0.00 31.56 3.46
1936 2663 6.091986 CCACTCTCTTTCAGTTCTATTTGCTC 59.908 42.308 0.00 0.00 0.00 4.26
1938 2665 6.873076 ACTCTCTTTCAGTTCTATTTGCTCTG 59.127 38.462 0.00 0.00 0.00 3.35
1944 2671 3.003480 AGTTCTATTTGCTCTGCGGTTC 58.997 45.455 0.00 0.00 0.00 3.62
1946 2673 2.621338 TCTATTTGCTCTGCGGTTCTG 58.379 47.619 0.00 0.00 0.00 3.02
1958 2685 1.197721 GCGGTTCTGAAAGTGTGATGG 59.802 52.381 0.00 0.00 33.76 3.51
1959 2686 2.494059 CGGTTCTGAAAGTGTGATGGT 58.506 47.619 0.00 0.00 33.76 3.55
2010 2737 3.118038 TCATAGACCAGGTAAACCATGCC 60.118 47.826 1.26 0.00 38.89 4.40
2031 2758 2.198406 GTACAGAAACTCACACACGCA 58.802 47.619 0.00 0.00 0.00 5.24
2037 2764 1.762222 AACTCACACACGCAACGAGC 61.762 55.000 0.00 0.00 40.87 5.03
2298 3025 5.278315 GCAGGTGTTCTCTTCGGTTTATTTT 60.278 40.000 0.00 0.00 0.00 1.82
2424 3151 0.036010 CAGTTCTCCTGATTGGCCGT 60.036 55.000 0.00 0.00 44.49 5.68
2486 3215 8.798402 TGAAAAACTTACCCGTTATGAATTCAT 58.202 29.630 23.75 23.75 40.22 2.57
2487 3216 9.634163 GAAAAACTTACCCGTTATGAATTCATT 57.366 29.630 25.26 9.51 37.76 2.57
2488 3217 9.634163 AAAAACTTACCCGTTATGAATTCATTC 57.366 29.630 25.26 16.95 37.76 2.67
2519 3255 5.526506 TTCTCGATCAGATCACATGTCAT 57.473 39.130 11.12 0.00 0.00 3.06
2524 3260 8.146412 TCTCGATCAGATCACATGTCATTATTT 58.854 33.333 11.12 0.00 0.00 1.40
2556 3292 5.091261 TGAGATTTTCTGAAGTAGCTCCC 57.909 43.478 13.61 0.00 0.00 4.30
2566 3302 5.663106 TCTGAAGTAGCTCCCTTTGTCATAT 59.337 40.000 0.00 0.00 0.00 1.78
2585 3321 1.770294 TTGACAACAGGTTGGGTTCC 58.230 50.000 15.84 1.74 44.45 3.62
2604 3340 1.862806 GCAAGAGCTGTGAACCGTC 59.137 57.895 0.00 0.00 37.91 4.79
2621 3357 2.617308 CCGTCGGTATATCAGTGACTGT 59.383 50.000 12.93 2.84 32.61 3.55
2669 3405 3.050275 GCAGGGTTCGTCAGTGCC 61.050 66.667 0.00 0.00 0.00 5.01
3022 3761 0.992072 CGATAACAGTGTGTGCTCCG 59.008 55.000 0.00 0.00 0.00 4.63
3027 3766 3.550431 AGTGTGTGCTCCGCCACT 61.550 61.111 8.25 0.00 36.68 4.00
3073 3812 8.340443 AGAAATTGTTCTAACACGAAGTTTACC 58.660 33.333 3.60 0.00 42.53 2.85
3086 3828 5.180680 ACGAAGTTTACCTGTGAAAATAGGC 59.819 40.000 0.00 0.00 37.78 3.93
3135 3877 2.233922 GGTCTAGCACAACCTCTGCTTA 59.766 50.000 0.00 0.00 42.54 3.09
3664 4420 9.338622 ACATACTATTTTAACTGGGATACAAGC 57.661 33.333 0.00 0.00 39.74 4.01
3667 4423 2.032680 TTAACTGGGATACAAGCGCC 57.967 50.000 2.29 0.00 39.74 6.53
3721 4477 4.702131 ACTGTTCTTCCAGTAAATGCCATC 59.298 41.667 0.00 0.00 43.71 3.51
3739 4495 1.246649 TCGTTGGGAGCTACGTTACA 58.753 50.000 6.64 0.00 38.79 2.41
3763 4519 6.488683 CAAATTGGTTTGAGGACAGGTAACTA 59.511 38.462 0.00 0.00 46.72 2.24
3784 4540 6.958767 ACTATTCTTAACAAGGCATACCAGT 58.041 36.000 0.00 0.00 39.06 4.00
3805 4561 9.784531 ACCAGTTGTATATATGAAATCCTTCTG 57.215 33.333 0.00 0.00 32.33 3.02
3806 4562 8.725148 CCAGTTGTATATATGAAATCCTTCTGC 58.275 37.037 0.00 0.00 32.33 4.26
3848 4604 2.541762 GTCATATTGCTGTTCTCGCCTC 59.458 50.000 0.00 0.00 0.00 4.70
3865 4621 2.675889 GCCTCCTTTGAACCATGCAATG 60.676 50.000 0.00 0.00 46.21 2.82
3869 4625 2.609984 CCTTTGAACCATGCAATGCGAA 60.610 45.455 0.00 0.00 44.97 4.70
3887 4686 4.624882 TGCGAATTACAAATGAAATGTGCC 59.375 37.500 0.00 0.00 33.78 5.01
3896 4695 3.795623 ATGAAATGTGCCATTGCTCTC 57.204 42.857 7.24 1.02 38.71 3.20
4053 5318 1.474478 GTCTCTTCGGCTCTCATCACA 59.526 52.381 0.00 0.00 0.00 3.58
4088 5353 2.029290 AGGTGCTTGAAGGTACGTACAG 60.029 50.000 26.02 15.45 0.00 2.74
4099 5373 5.593679 AGGTACGTACAGCATAACAATCT 57.406 39.130 26.02 7.38 0.00 2.40
4100 5374 5.589192 AGGTACGTACAGCATAACAATCTC 58.411 41.667 26.02 4.59 0.00 2.75
4102 5376 5.983720 GGTACGTACAGCATAACAATCTCAT 59.016 40.000 26.02 0.00 0.00 2.90
4119 5393 4.304939 TCTCATAATCATTCAGCTCAGCG 58.695 43.478 0.00 0.00 0.00 5.18
4130 5404 3.108289 CTCAGCGGCACACGTGAG 61.108 66.667 25.01 16.59 46.52 3.51
4131 5405 3.558099 CTCAGCGGCACACGTGAGA 62.558 63.158 25.01 7.02 45.26 3.27
4226 5503 1.212751 CATGTCGTCGAGGCTGTCA 59.787 57.895 0.00 0.00 0.00 3.58
4241 5518 1.825474 CTGTCACGAGGGACCTACAAT 59.175 52.381 2.75 0.00 36.97 2.71
4388 5665 1.371022 CATCCTCTCCATCGTCGCG 60.371 63.158 0.00 0.00 0.00 5.87
4429 5706 1.846007 CTCTACTGAGGCTGACCAGT 58.154 55.000 11.51 11.51 44.81 4.00
4431 5708 2.685897 CTCTACTGAGGCTGACCAGTAC 59.314 54.545 9.72 0.00 42.86 2.73
4432 5709 2.041216 TCTACTGAGGCTGACCAGTACA 59.959 50.000 9.72 0.00 42.86 2.90
4433 5710 1.261480 ACTGAGGCTGACCAGTACAG 58.739 55.000 5.60 13.70 41.38 2.74
4434 5711 1.261480 CTGAGGCTGACCAGTACAGT 58.739 55.000 0.00 0.00 39.06 3.55
4436 5713 2.425312 CTGAGGCTGACCAGTACAGTAG 59.575 54.545 0.00 0.00 39.06 2.57
4437 5714 2.041216 TGAGGCTGACCAGTACAGTAGA 59.959 50.000 0.00 0.00 39.06 2.59
4438 5715 2.685897 GAGGCTGACCAGTACAGTAGAG 59.314 54.545 0.00 0.00 39.06 2.43
4439 5716 1.751924 GGCTGACCAGTACAGTAGAGG 59.248 57.143 0.00 0.00 37.64 3.69
4440 5717 1.751924 GCTGACCAGTACAGTAGAGGG 59.248 57.143 0.00 0.00 37.64 4.30
4442 5719 2.755655 CTGACCAGTACAGTAGAGGGTG 59.244 54.545 0.00 0.00 0.00 4.61
4443 5720 2.377531 TGACCAGTACAGTAGAGGGTGA 59.622 50.000 0.00 0.00 0.00 4.02
4444 5721 3.181426 TGACCAGTACAGTAGAGGGTGAA 60.181 47.826 0.00 0.00 0.00 3.18
4498 5786 2.094100 TTGGGCTTGGGATGTTCAAA 57.906 45.000 0.00 0.00 0.00 2.69
4555 5847 8.574196 ACTTCAATAAACTGTGTAAATGTTGC 57.426 30.769 0.00 0.00 0.00 4.17
4598 5890 0.666577 AAAGGCGTCGTAGTGCAGTC 60.667 55.000 0.00 0.00 0.00 3.51
4935 6255 2.582272 GCCATGCCAAATCCTCACA 58.418 52.632 0.00 0.00 0.00 3.58
5041 6361 0.102120 CGGAGATGAGCTCACTGGTC 59.898 60.000 20.97 12.92 45.81 4.02
5043 6371 0.814457 GAGATGAGCTCACTGGTCGT 59.186 55.000 20.97 0.00 45.46 4.34
5054 6382 1.667151 CTGGTCGTTCCGGTGGTTA 59.333 57.895 0.00 0.00 39.52 2.85
5098 6426 2.893895 ACGCTCATGGCATGCTCG 60.894 61.111 27.23 27.23 41.91 5.03
5102 6430 1.818363 CTCATGGCATGCTCGCTGT 60.818 57.895 22.56 0.00 0.00 4.40
5113 6444 2.125713 TCGCTGTGGCATGTACCG 60.126 61.111 0.00 0.00 38.60 4.02
5114 6445 3.864686 CGCTGTGGCATGTACCGC 61.865 66.667 0.00 1.79 40.80 5.68
5125 6473 0.734942 ATGTACCGCAGCACACGTAC 60.735 55.000 0.00 0.00 0.00 3.67
5126 6474 2.090524 GTACCGCAGCACACGTACC 61.091 63.158 0.00 0.00 0.00 3.34
5137 6485 2.975536 ACGTACCGTGGGATGTGG 59.024 61.111 0.00 0.00 39.18 4.17
5138 6486 1.909781 ACGTACCGTGGGATGTGGT 60.910 57.895 0.00 0.00 39.18 4.16
5140 6488 1.153706 GTACCGTGGGATGTGGTCG 60.154 63.158 0.00 0.00 37.20 4.79
5243 6592 0.178990 AAGAACCAAGCTCCACCACC 60.179 55.000 0.00 0.00 0.00 4.61
5252 6601 3.633094 CTCCACCACCGCACTCTCG 62.633 68.421 0.00 0.00 0.00 4.04
5349 6698 4.529219 CTGGCGGCCATCTGCGTA 62.529 66.667 24.10 0.00 45.50 4.42
5350 6699 4.529219 TGGCGGCCATCTGCGTAG 62.529 66.667 19.77 0.00 45.50 3.51
5355 6704 3.724494 GCCATCTGCGTAGGCTTC 58.276 61.111 9.11 0.00 44.92 3.86
5356 6705 1.144936 GCCATCTGCGTAGGCTTCT 59.855 57.895 9.11 0.00 44.92 2.85
5357 6706 0.462759 GCCATCTGCGTAGGCTTCTT 60.463 55.000 9.11 0.00 44.92 2.52
5358 6707 1.576356 CCATCTGCGTAGGCTTCTTC 58.424 55.000 9.11 0.00 40.82 2.87
5359 6708 1.203928 CATCTGCGTAGGCTTCTTCG 58.796 55.000 9.11 0.00 40.82 3.79
5360 6709 0.818296 ATCTGCGTAGGCTTCTTCGT 59.182 50.000 9.11 0.00 40.82 3.85
5361 6710 0.170561 TCTGCGTAGGCTTCTTCGTC 59.829 55.000 9.11 0.00 40.82 4.20
5362 6711 0.109272 CTGCGTAGGCTTCTTCGTCA 60.109 55.000 9.11 0.00 40.82 4.35
5363 6712 0.530744 TGCGTAGGCTTCTTCGTCAT 59.469 50.000 9.11 0.00 40.82 3.06
5364 6713 1.201343 GCGTAGGCTTCTTCGTCATC 58.799 55.000 0.00 0.00 34.46 2.92
5365 6714 1.841450 CGTAGGCTTCTTCGTCATCC 58.159 55.000 0.00 0.00 0.00 3.51
5366 6715 1.405821 CGTAGGCTTCTTCGTCATCCT 59.594 52.381 0.00 0.00 0.00 3.24
5367 6716 2.617308 CGTAGGCTTCTTCGTCATCCTA 59.383 50.000 0.00 0.00 0.00 2.94
5368 6717 3.253677 CGTAGGCTTCTTCGTCATCCTAT 59.746 47.826 0.00 0.00 0.00 2.57
5369 6718 3.742433 AGGCTTCTTCGTCATCCTATG 57.258 47.619 0.00 0.00 0.00 2.23
5370 6719 2.139118 GGCTTCTTCGTCATCCTATGC 58.861 52.381 0.00 0.00 0.00 3.14
5371 6720 2.224161 GGCTTCTTCGTCATCCTATGCT 60.224 50.000 0.00 0.00 0.00 3.79
5372 6721 2.799412 GCTTCTTCGTCATCCTATGCTG 59.201 50.000 0.00 0.00 0.00 4.41
5373 6722 2.515926 TCTTCGTCATCCTATGCTGC 57.484 50.000 0.00 0.00 0.00 5.25
5374 6723 2.034878 TCTTCGTCATCCTATGCTGCT 58.965 47.619 0.00 0.00 0.00 4.24
5375 6724 2.035193 TCTTCGTCATCCTATGCTGCTC 59.965 50.000 0.00 0.00 0.00 4.26
5376 6725 0.312102 TCGTCATCCTATGCTGCTCG 59.688 55.000 0.00 0.00 0.00 5.03
5377 6726 1.280886 CGTCATCCTATGCTGCTCGC 61.281 60.000 0.00 0.00 39.77 5.03
5378 6727 0.948141 GTCATCCTATGCTGCTCGCC 60.948 60.000 0.00 0.00 38.05 5.54
5379 6728 1.070275 CATCCTATGCTGCTCGCCA 59.930 57.895 0.00 0.00 38.05 5.69
5380 6729 1.070445 ATCCTATGCTGCTCGCCAC 59.930 57.895 0.00 0.00 38.05 5.01
5381 6730 1.689243 ATCCTATGCTGCTCGCCACA 61.689 55.000 0.00 0.00 38.05 4.17
5382 6731 1.450134 CCTATGCTGCTCGCCACAA 60.450 57.895 0.00 0.00 38.05 3.33
5383 6732 1.434622 CCTATGCTGCTCGCCACAAG 61.435 60.000 0.00 0.00 38.05 3.16
5384 6733 1.434622 CTATGCTGCTCGCCACAAGG 61.435 60.000 0.00 0.00 38.05 3.61
5385 6734 2.184020 TATGCTGCTCGCCACAAGGT 62.184 55.000 0.00 0.00 38.05 3.50
5393 6742 4.164258 GCCACAAGGTGACTGCTT 57.836 55.556 0.00 0.00 42.68 3.91
5394 6743 3.322514 GCCACAAGGTGACTGCTTA 57.677 52.632 0.00 0.00 42.68 3.09
5395 6744 1.160137 GCCACAAGGTGACTGCTTAG 58.840 55.000 0.00 0.00 42.68 2.18
5396 6745 1.160137 CCACAAGGTGACTGCTTAGC 58.840 55.000 0.00 0.00 42.68 3.09
5397 6746 1.271054 CCACAAGGTGACTGCTTAGCT 60.271 52.381 5.60 0.00 42.68 3.32
5398 6747 2.498167 CACAAGGTGACTGCTTAGCTT 58.502 47.619 5.60 0.00 42.68 3.74
5399 6748 2.880890 CACAAGGTGACTGCTTAGCTTT 59.119 45.455 5.60 0.00 42.68 3.51
5400 6749 3.058639 CACAAGGTGACTGCTTAGCTTTC 60.059 47.826 5.60 2.22 42.68 2.62
5401 6750 3.181450 ACAAGGTGACTGCTTAGCTTTCT 60.181 43.478 5.60 0.00 42.68 2.52
5402 6751 3.326836 AGGTGACTGCTTAGCTTTCTC 57.673 47.619 5.60 2.81 41.13 2.87
5403 6752 2.634940 AGGTGACTGCTTAGCTTTCTCA 59.365 45.455 5.60 0.00 41.13 3.27
5404 6753 2.739379 GGTGACTGCTTAGCTTTCTCAC 59.261 50.000 5.60 10.02 0.00 3.51
5405 6754 3.556004 GGTGACTGCTTAGCTTTCTCACT 60.556 47.826 5.60 0.00 0.00 3.41
5406 6755 4.061596 GTGACTGCTTAGCTTTCTCACTT 58.938 43.478 5.60 0.00 0.00 3.16
5407 6756 4.151512 GTGACTGCTTAGCTTTCTCACTTC 59.848 45.833 5.60 0.00 0.00 3.01
5408 6757 3.321497 ACTGCTTAGCTTTCTCACTTCG 58.679 45.455 5.60 0.00 0.00 3.79
5409 6758 3.005897 ACTGCTTAGCTTTCTCACTTCGA 59.994 43.478 5.60 0.00 0.00 3.71
5410 6759 4.180057 CTGCTTAGCTTTCTCACTTCGAT 58.820 43.478 5.60 0.00 0.00 3.59
5411 6760 4.177026 TGCTTAGCTTTCTCACTTCGATC 58.823 43.478 5.60 0.00 0.00 3.69
5412 6761 3.241784 GCTTAGCTTTCTCACTTCGATCG 59.758 47.826 9.36 9.36 0.00 3.69
5413 6762 4.663166 CTTAGCTTTCTCACTTCGATCGA 58.337 43.478 15.15 15.15 0.00 3.59
5414 6763 3.143807 AGCTTTCTCACTTCGATCGAG 57.856 47.619 18.54 14.40 0.00 4.04
5415 6764 1.586123 GCTTTCTCACTTCGATCGAGC 59.414 52.381 18.54 10.94 0.00 5.03
5416 6765 2.733858 GCTTTCTCACTTCGATCGAGCT 60.734 50.000 18.54 4.31 0.00 4.09
5417 6766 2.834574 TTCTCACTTCGATCGAGCTC 57.165 50.000 18.54 2.73 0.00 4.09
5418 6767 1.018148 TCTCACTTCGATCGAGCTCC 58.982 55.000 18.54 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 60 2.746362 GTCAGAGGAGCTCATTTGTTGG 59.254 50.000 17.21 0.00 32.06 3.77
237 243 9.492730 AATTGGACAAAATTAATCTATGGTCCT 57.507 29.630 17.08 3.02 43.01 3.85
289 295 2.862536 CACTGATCGCACCTACATCAAG 59.137 50.000 0.00 0.00 0.00 3.02
303 309 4.363138 TGTCGCATGACTTATCACTGATC 58.637 43.478 0.00 0.00 45.70 2.92
367 377 4.399483 TGAGTCACTAGAGGGGTAACTT 57.601 45.455 0.00 0.00 0.00 2.66
369 379 3.385111 CCATGAGTCACTAGAGGGGTAAC 59.615 52.174 0.00 0.00 0.00 2.50
379 389 5.009110 GTCGAGAATGATCCATGAGTCACTA 59.991 44.000 0.00 0.00 0.00 2.74
390 400 2.672961 TGTGGTGTCGAGAATGATCC 57.327 50.000 0.00 0.00 0.00 3.36
391 401 6.456988 GGTTAATTGTGGTGTCGAGAATGATC 60.457 42.308 0.00 0.00 0.00 2.92
395 405 4.906618 AGGTTAATTGTGGTGTCGAGAAT 58.093 39.130 0.00 0.00 0.00 2.40
418 428 4.813161 CACTACATGTTAGGAGGATTGCAG 59.187 45.833 2.30 0.00 0.00 4.41
422 432 6.203072 ACTACCACTACATGTTAGGAGGATT 58.797 40.000 2.30 0.00 0.00 3.01
482 492 2.620115 CAAGGAGAACAAAGCTTCTGCA 59.380 45.455 0.00 0.00 40.21 4.41
486 496 3.500299 GGTCTCAAGGAGAACAAAGCTTC 59.500 47.826 0.00 0.00 44.94 3.86
507 517 5.632347 CACGGTGAGTACTTTTAACAGTAGG 59.368 44.000 0.74 0.00 29.53 3.18
551 562 6.368516 CCATAACAATTTTGTCATTCACCACC 59.631 38.462 0.00 0.00 41.31 4.61
554 565 7.151308 TCACCATAACAATTTTGTCATTCACC 58.849 34.615 0.00 0.00 41.31 4.02
562 573 6.976088 TCGTCATTCACCATAACAATTTTGT 58.024 32.000 0.00 0.00 44.72 2.83
572 583 7.015195 TCCATAAGAGATTCGTCATTCACCATA 59.985 37.037 0.00 0.00 0.00 2.74
584 595 3.551046 CCGTCCACTCCATAAGAGATTCG 60.551 52.174 0.00 0.00 46.50 3.34
586 597 3.375699 ACCGTCCACTCCATAAGAGATT 58.624 45.455 0.00 0.00 46.50 2.40
620 634 4.763279 ACCCGTTTCCCTGTTTATACAAAG 59.237 41.667 0.00 0.00 32.92 2.77
676 690 8.839343 TCACACGATTCAGCATTATAATCAAAT 58.161 29.630 0.00 0.00 31.37 2.32
685 699 3.688673 TGCATTCACACGATTCAGCATTA 59.311 39.130 0.00 0.00 0.00 1.90
686 700 2.488937 TGCATTCACACGATTCAGCATT 59.511 40.909 0.00 0.00 0.00 3.56
687 701 2.086094 TGCATTCACACGATTCAGCAT 58.914 42.857 0.00 0.00 0.00 3.79
688 702 1.197492 GTGCATTCACACGATTCAGCA 59.803 47.619 0.00 0.00 42.66 4.41
689 703 1.887320 GTGCATTCACACGATTCAGC 58.113 50.000 0.00 0.00 42.66 4.26
699 713 3.674753 GCCAATAAACAGTGTGCATTCAC 59.325 43.478 0.00 0.00 43.40 3.18
700 714 3.573538 AGCCAATAAACAGTGTGCATTCA 59.426 39.130 0.00 0.00 0.00 2.57
701 715 4.178545 AGCCAATAAACAGTGTGCATTC 57.821 40.909 0.00 0.00 0.00 2.67
702 716 5.720371 TTAGCCAATAAACAGTGTGCATT 57.280 34.783 0.00 0.00 0.00 3.56
703 717 5.720371 TTTAGCCAATAAACAGTGTGCAT 57.280 34.783 0.00 0.00 0.00 3.96
704 718 5.242615 TGATTTAGCCAATAAACAGTGTGCA 59.757 36.000 0.00 0.00 36.20 4.57
705 719 5.572896 GTGATTTAGCCAATAAACAGTGTGC 59.427 40.000 0.00 0.00 36.20 4.57
706 720 6.803320 CAGTGATTTAGCCAATAAACAGTGTG 59.197 38.462 0.00 0.00 36.20 3.82
707 721 6.490040 ACAGTGATTTAGCCAATAAACAGTGT 59.510 34.615 0.00 0.00 40.08 3.55
708 722 6.913170 ACAGTGATTTAGCCAATAAACAGTG 58.087 36.000 0.00 0.00 39.13 3.66
859 892 5.704053 ACGTCTAGGGAATTGTTTTTCGAAT 59.296 36.000 0.00 0.00 0.00 3.34
868 903 4.755266 ATAAGCACGTCTAGGGAATTGT 57.245 40.909 0.00 0.00 0.00 2.71
869 904 7.548196 TTAAATAAGCACGTCTAGGGAATTG 57.452 36.000 0.00 0.00 0.00 2.32
1066 1101 6.677781 TTTGTTAGAGTTGTGAAGGACTTG 57.322 37.500 0.00 0.00 0.00 3.16
1289 1982 8.850454 TGAACAAGTAGCTTGAAAATTTGTAC 57.150 30.769 14.81 0.00 43.42 2.90
1334 2027 4.202284 ACCAAAGAACTTTAGCTCGTGGTA 60.202 41.667 0.00 0.00 34.16 3.25
1410 2137 4.230733 TCCTCAATCCTTCTAGAGAGGTGA 59.769 45.833 18.20 14.13 42.45 4.02
1755 2482 6.009115 TCGATAGAAGCGCATGATAACTTA 57.991 37.500 11.47 0.00 46.15 2.24
1904 2631 2.036089 ACTGAAAGAGAGTGGAACCGTC 59.964 50.000 0.00 0.00 34.91 4.79
1936 2663 1.581934 TCACACTTTCAGAACCGCAG 58.418 50.000 0.00 0.00 0.00 5.18
1938 2665 1.197721 CCATCACACTTTCAGAACCGC 59.802 52.381 0.00 0.00 0.00 5.68
1944 2671 8.103948 AGAAAAGAATACCATCACACTTTCAG 57.896 34.615 0.00 0.00 0.00 3.02
1946 2673 7.174946 TGGAGAAAAGAATACCATCACACTTTC 59.825 37.037 0.00 0.00 0.00 2.62
1958 2685 8.841300 GGTCCTGAATATTGGAGAAAAGAATAC 58.159 37.037 0.00 0.00 32.36 1.89
1959 2686 7.998964 GGGTCCTGAATATTGGAGAAAAGAATA 59.001 37.037 0.00 0.00 32.36 1.75
2010 2737 1.189446 GCGTGTGTGAGTTTCTGTACG 59.811 52.381 0.00 0.00 0.00 3.67
2097 2824 5.105797 GCTCTCATCATCGACATTATCCTCT 60.106 44.000 0.00 0.00 0.00 3.69
2274 3001 1.594331 AAACCGAAGAGAACACCTGC 58.406 50.000 0.00 0.00 0.00 4.85
2298 3025 2.029623 GACCTATTCGACCAGGCACTA 58.970 52.381 10.74 0.00 36.02 2.74
2424 3151 5.932619 AATCTGCATACCCGCATAGTATA 57.067 39.130 0.00 0.00 42.06 1.47
2458 3187 9.634163 GAATTCATAACGGGTAAGTTTTTCAAT 57.366 29.630 0.00 0.00 35.70 2.57
2460 3189 8.167605 TGAATTCATAACGGGTAAGTTTTTCA 57.832 30.769 3.38 0.00 35.70 2.69
2463 3192 9.020731 AGAATGAATTCATAACGGGTAAGTTTT 57.979 29.630 21.00 1.23 39.23 2.43
2494 3223 5.077134 ACATGTGATCTGATCGAGAAACA 57.923 39.130 12.65 10.84 36.37 2.83
2528 3264 8.038492 AGCTACTTCAGAAAATCTCAAATCAC 57.962 34.615 0.00 0.00 0.00 3.06
2566 3302 1.770294 GGAACCCAACCTGTTGTCAA 58.230 50.000 9.03 0.00 38.85 3.18
2585 3321 1.891060 GACGGTTCACAGCTCTTGCG 61.891 60.000 0.00 0.00 45.42 4.85
2604 3340 3.116300 GCACACAGTCACTGATATACCG 58.884 50.000 13.14 0.00 35.18 4.02
2642 3378 1.073897 GAACCCTGCAGAGGCTTGT 59.926 57.895 17.39 1.46 41.91 3.16
2669 3405 1.134367 CATGCCATTCCAAGAGCACTG 59.866 52.381 0.00 0.00 38.21 3.66
3027 3766 5.017294 TCTGACGATGTTACATAATGCCA 57.983 39.130 0.00 0.00 0.00 4.92
3073 3812 5.902613 TTCTTGATGGCCTATTTTCACAG 57.097 39.130 3.32 1.44 0.00 3.66
3086 3828 6.271488 TCCAAATTAGCACTTTCTTGATGG 57.729 37.500 0.00 0.00 0.00 3.51
3135 3877 3.037549 CCAGCCTCTCTTCTGAACCTAT 58.962 50.000 0.00 0.00 32.26 2.57
3413 4168 4.951715 TCGATGCCAACTTACCTTCTACTA 59.048 41.667 0.00 0.00 0.00 1.82
3414 4169 3.767673 TCGATGCCAACTTACCTTCTACT 59.232 43.478 0.00 0.00 0.00 2.57
3415 4170 3.864003 GTCGATGCCAACTTACCTTCTAC 59.136 47.826 0.00 0.00 0.00 2.59
3497 4252 9.694137 ACAAGACAGTAGTTTCAGTAGATAAAC 57.306 33.333 0.00 0.00 36.13 2.01
3664 4420 0.098728 CTAAAAAGATGGCCACGGCG 59.901 55.000 8.16 4.80 43.06 6.46
3667 4423 1.083489 TCGCTAAAAAGATGGCCACG 58.917 50.000 8.16 3.40 0.00 4.94
3721 4477 2.068837 TTGTAACGTAGCTCCCAACG 57.931 50.000 5.24 5.24 44.47 4.10
3739 4495 5.454966 AGTTACCTGTCCTCAAACCAATTT 58.545 37.500 0.00 0.00 0.00 1.82
3763 4519 6.010219 ACAACTGGTATGCCTTGTTAAGAAT 58.990 36.000 0.16 0.00 31.53 2.40
3805 4561 8.319143 TGACCAGTACAATACTTTTAGAAAGC 57.681 34.615 0.00 0.00 36.76 3.51
3820 4576 5.419542 GAGAACAGCAATATGACCAGTACA 58.580 41.667 0.00 0.00 0.00 2.90
3821 4577 4.504461 CGAGAACAGCAATATGACCAGTAC 59.496 45.833 0.00 0.00 0.00 2.73
3848 4604 1.067706 TCGCATTGCATGGTTCAAAGG 60.068 47.619 9.69 0.00 0.00 3.11
3865 4621 4.624882 TGGCACATTTCATTTGTAATTCGC 59.375 37.500 0.00 0.00 0.00 4.70
3887 4686 6.153756 TGATTTTGACAATGTGAGAGCAATG 58.846 36.000 0.00 0.00 0.00 2.82
3930 4729 4.219288 AGAATTTGCCTGCGAAAGAAAGAT 59.781 37.500 0.00 0.00 0.00 2.40
4053 5318 1.571919 GCACCTCTGCGAATACGAAT 58.428 50.000 0.00 0.00 42.66 3.34
4082 5347 8.298030 TGATTATGAGATTGTTATGCTGTACG 57.702 34.615 0.00 0.00 0.00 3.67
4088 5353 8.512956 AGCTGAATGATTATGAGATTGTTATGC 58.487 33.333 0.00 0.00 0.00 3.14
4099 5373 3.396560 CCGCTGAGCTGAATGATTATGA 58.603 45.455 1.78 0.00 0.00 2.15
4100 5374 2.095869 GCCGCTGAGCTGAATGATTATG 60.096 50.000 1.78 0.00 0.00 1.90
4102 5376 1.134431 TGCCGCTGAGCTGAATGATTA 60.134 47.619 1.78 0.00 0.00 1.75
4119 5393 3.165058 TCAGATATTCTCACGTGTGCC 57.835 47.619 16.51 1.27 0.00 5.01
4127 5401 7.658167 TGTTTACGGTTGTTTCAGATATTCTCA 59.342 33.333 0.00 0.00 0.00 3.27
4130 5404 7.536281 GGTTGTTTACGGTTGTTTCAGATATTC 59.464 37.037 0.00 0.00 0.00 1.75
4131 5405 7.229907 AGGTTGTTTACGGTTGTTTCAGATATT 59.770 33.333 0.00 0.00 0.00 1.28
4226 5503 1.905512 GCCATTGTAGGTCCCTCGT 59.094 57.895 0.00 0.00 0.00 4.18
4241 5518 3.706373 GTTGAGAGGAGGCCGCCA 61.706 66.667 28.68 3.26 0.00 5.69
4388 5665 2.096417 GGTGTTGTATGTGCAGAACGTC 60.096 50.000 0.00 0.00 0.00 4.34
4421 5698 2.755655 CACCCTCTACTGTACTGGTCAG 59.244 54.545 4.66 0.00 38.68 3.51
4422 5699 2.377531 TCACCCTCTACTGTACTGGTCA 59.622 50.000 4.66 0.00 0.00 4.02
4424 5701 3.537795 TTCACCCTCTACTGTACTGGT 57.462 47.619 4.66 1.40 0.00 4.00
4425 5702 4.884668 TTTTCACCCTCTACTGTACTGG 57.115 45.455 4.66 0.00 0.00 4.00
4426 5703 5.794894 ACATTTTCACCCTCTACTGTACTG 58.205 41.667 0.00 0.00 0.00 2.74
4428 5705 6.694447 TGTACATTTTCACCCTCTACTGTAC 58.306 40.000 0.00 0.00 38.62 2.90
4429 5706 6.070995 CCTGTACATTTTCACCCTCTACTGTA 60.071 42.308 0.00 0.00 0.00 2.74
4431 5708 5.178797 CCTGTACATTTTCACCCTCTACTG 58.821 45.833 0.00 0.00 0.00 2.74
4432 5709 4.323562 GCCTGTACATTTTCACCCTCTACT 60.324 45.833 0.00 0.00 0.00 2.57
4433 5710 3.939592 GCCTGTACATTTTCACCCTCTAC 59.060 47.826 0.00 0.00 0.00 2.59
4434 5711 3.585289 TGCCTGTACATTTTCACCCTCTA 59.415 43.478 0.00 0.00 0.00 2.43
4436 5713 2.749621 CTGCCTGTACATTTTCACCCTC 59.250 50.000 0.00 0.00 0.00 4.30
4437 5714 2.108250 ACTGCCTGTACATTTTCACCCT 59.892 45.455 0.00 0.00 0.00 4.34
4438 5715 2.228822 CACTGCCTGTACATTTTCACCC 59.771 50.000 0.00 0.00 0.00 4.61
4439 5716 3.146066 TCACTGCCTGTACATTTTCACC 58.854 45.455 0.00 0.00 0.00 4.02
4440 5717 4.829064 TTCACTGCCTGTACATTTTCAC 57.171 40.909 0.00 0.00 0.00 3.18
4442 5719 5.634859 CCATTTTCACTGCCTGTACATTTTC 59.365 40.000 0.00 0.00 0.00 2.29
4443 5720 5.070313 ACCATTTTCACTGCCTGTACATTTT 59.930 36.000 0.00 0.00 0.00 1.82
4444 5721 4.588528 ACCATTTTCACTGCCTGTACATTT 59.411 37.500 0.00 0.00 0.00 2.32
4485 5773 2.752354 CGCCACTATTTGAACATCCCAA 59.248 45.455 0.00 0.00 0.00 4.12
4490 5778 7.333528 ACAAATATCGCCACTATTTGAACAT 57.666 32.000 19.29 3.15 44.07 2.71
4498 5786 7.272978 AGTCTACAAACAAATATCGCCACTAT 58.727 34.615 0.00 0.00 0.00 2.12
4555 5847 2.078849 TACATGGACGTGCAACAGAG 57.921 50.000 15.51 4.63 35.74 3.35
4638 5930 4.331968 TCGCAAGTTCAGGGATACAAATT 58.668 39.130 0.00 0.00 37.01 1.82
4965 6285 0.955919 CTCTTCCCTGTTTGGTCGCC 60.956 60.000 0.00 0.00 0.00 5.54
5043 6371 3.479489 GAAAAGGACTTAACCACCGGAA 58.521 45.455 9.46 0.00 0.00 4.30
5054 6382 2.638363 AGAAGCGGTAGGAAAAGGACTT 59.362 45.455 0.00 0.00 0.00 3.01
5098 6426 2.745884 TGCGGTACATGCCACAGC 60.746 61.111 13.80 13.80 37.57 4.40
5102 6430 2.745884 GTGCTGCGGTACATGCCA 60.746 61.111 9.10 0.00 0.00 4.92
5106 6434 0.734942 GTACGTGTGCTGCGGTACAT 60.735 55.000 19.80 7.40 39.96 2.29
5125 6473 3.680620 ATGCGACCACATCCCACGG 62.681 63.158 0.00 0.00 0.00 4.94
5126 6474 2.125147 ATGCGACCACATCCCACG 60.125 61.111 0.00 0.00 0.00 4.94
5129 6477 1.377202 ACACATGCGACCACATCCC 60.377 57.895 0.00 0.00 0.00 3.85
5131 6479 1.135315 GCACACATGCGACCACATC 59.865 57.895 0.00 0.00 43.33 3.06
5266 6615 3.127533 AAGATGCAAGCCGACCGC 61.128 61.111 0.00 0.00 37.98 5.68
5325 6674 4.479993 ATGGCCGCCAGTGCTCTC 62.480 66.667 18.96 0.00 36.75 3.20
5336 6685 3.740128 AAGCCTACGCAGATGGCCG 62.740 63.158 0.00 0.00 46.29 6.13
5338 6687 0.462759 AAGAAGCCTACGCAGATGGC 60.463 55.000 0.00 0.00 45.73 4.40
5339 6688 1.576356 GAAGAAGCCTACGCAGATGG 58.424 55.000 0.00 0.00 37.52 3.51
5348 6697 3.005897 GCATAGGATGACGAAGAAGCCTA 59.994 47.826 0.00 0.00 39.25 3.93
5349 6698 2.224161 GCATAGGATGACGAAGAAGCCT 60.224 50.000 0.00 0.00 37.32 4.58
5350 6699 2.139118 GCATAGGATGACGAAGAAGCC 58.861 52.381 0.00 0.00 0.00 4.35
5351 6700 2.799412 CAGCATAGGATGACGAAGAAGC 59.201 50.000 0.00 0.00 30.05 3.86
5352 6701 2.799412 GCAGCATAGGATGACGAAGAAG 59.201 50.000 0.00 0.00 30.05 2.85
5353 6702 2.432146 AGCAGCATAGGATGACGAAGAA 59.568 45.455 0.00 0.00 30.05 2.52
5354 6703 2.034878 AGCAGCATAGGATGACGAAGA 58.965 47.619 0.00 0.00 30.05 2.87
5355 6704 2.402305 GAGCAGCATAGGATGACGAAG 58.598 52.381 0.00 0.00 30.05 3.79
5356 6705 1.269257 CGAGCAGCATAGGATGACGAA 60.269 52.381 0.00 0.00 35.17 3.85
5357 6706 0.312102 CGAGCAGCATAGGATGACGA 59.688 55.000 0.00 0.00 35.17 4.20
5358 6707 2.806577 CGAGCAGCATAGGATGACG 58.193 57.895 0.00 0.00 30.05 4.35
5370 6719 2.031012 TCACCTTGTGGCGAGCAG 59.969 61.111 0.00 0.00 36.63 4.24
5371 6720 2.280797 GTCACCTTGTGGCGAGCA 60.281 61.111 0.00 0.00 36.63 4.26
5372 6721 2.031163 AGTCACCTTGTGGCGAGC 59.969 61.111 0.00 0.00 43.57 5.03
5373 6722 2.320587 GCAGTCACCTTGTGGCGAG 61.321 63.158 0.00 0.00 43.57 5.03
5374 6723 2.280797 GCAGTCACCTTGTGGCGA 60.281 61.111 0.00 0.00 43.57 5.54
5375 6724 0.602638 TAAGCAGTCACCTTGTGGCG 60.603 55.000 0.00 0.00 43.57 5.69
5376 6725 1.160137 CTAAGCAGTCACCTTGTGGC 58.840 55.000 0.00 0.00 38.58 5.01
5377 6726 1.160137 GCTAAGCAGTCACCTTGTGG 58.840 55.000 0.00 0.00 39.83 4.17
5378 6727 2.175878 AGCTAAGCAGTCACCTTGTG 57.824 50.000 0.00 0.00 34.45 3.33
5379 6728 2.938956 AAGCTAAGCAGTCACCTTGT 57.061 45.000 0.00 0.00 0.00 3.16
5380 6729 3.406764 AGAAAGCTAAGCAGTCACCTTG 58.593 45.455 0.00 0.00 0.00 3.61
5381 6730 3.071602 TGAGAAAGCTAAGCAGTCACCTT 59.928 43.478 0.00 0.00 0.00 3.50
5382 6731 2.634940 TGAGAAAGCTAAGCAGTCACCT 59.365 45.455 0.00 0.00 0.00 4.00
5383 6732 2.739379 GTGAGAAAGCTAAGCAGTCACC 59.261 50.000 0.00 0.00 0.00 4.02
5384 6733 3.658709 AGTGAGAAAGCTAAGCAGTCAC 58.341 45.455 0.00 0.00 34.36 3.67
5385 6734 4.310769 GAAGTGAGAAAGCTAAGCAGTCA 58.689 43.478 0.00 0.00 0.00 3.41
5386 6735 3.366422 CGAAGTGAGAAAGCTAAGCAGTC 59.634 47.826 0.00 0.00 0.00 3.51
5387 6736 3.005897 TCGAAGTGAGAAAGCTAAGCAGT 59.994 43.478 0.00 0.00 0.00 4.40
5388 6737 3.579709 TCGAAGTGAGAAAGCTAAGCAG 58.420 45.455 0.00 0.00 0.00 4.24
5389 6738 3.660501 TCGAAGTGAGAAAGCTAAGCA 57.339 42.857 0.00 0.00 0.00 3.91
5390 6739 3.241784 CGATCGAAGTGAGAAAGCTAAGC 59.758 47.826 10.26 0.00 0.00 3.09
5391 6740 4.663166 TCGATCGAAGTGAGAAAGCTAAG 58.337 43.478 16.99 0.00 0.00 2.18
5392 6741 4.663166 CTCGATCGAAGTGAGAAAGCTAA 58.337 43.478 19.92 0.00 31.31 3.09
5393 6742 3.487711 GCTCGATCGAAGTGAGAAAGCTA 60.488 47.826 19.92 0.00 31.31 3.32
5394 6743 2.733858 GCTCGATCGAAGTGAGAAAGCT 60.734 50.000 19.92 0.00 31.31 3.74
5395 6744 1.586123 GCTCGATCGAAGTGAGAAAGC 59.414 52.381 19.92 11.58 31.31 3.51
5396 6745 3.105203 GAGCTCGATCGAAGTGAGAAAG 58.895 50.000 19.92 5.07 31.31 2.62
5397 6746 2.159366 GGAGCTCGATCGAAGTGAGAAA 60.159 50.000 19.92 0.00 31.31 2.52
5398 6747 1.402259 GGAGCTCGATCGAAGTGAGAA 59.598 52.381 19.92 0.00 31.31 2.87
5399 6748 1.018148 GGAGCTCGATCGAAGTGAGA 58.982 55.000 19.92 0.00 31.31 3.27
5400 6749 3.542825 GGAGCTCGATCGAAGTGAG 57.457 57.895 19.92 8.11 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.