Multiple sequence alignment - TraesCS2A01G398600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G398600 chr2A 100.000 3434 0 0 1 3434 651823443 651820010 0.000000e+00 6342.0
1 TraesCS2A01G398600 chr2A 75.276 995 205 32 1401 2373 651916171 651917146 1.460000e-118 436.0
2 TraesCS2A01G398600 chr2B 92.418 2796 159 23 6 2764 595371200 595368421 0.000000e+00 3940.0
3 TraesCS2A01G398600 chr2B 74.388 980 222 25 1401 2364 595578428 595579394 3.210000e-105 392.0
4 TraesCS2A01G398600 chr2B 100.000 86 0 0 3349 3434 437240421 437240336 3.550000e-35 159.0
5 TraesCS2A01G398600 chr2B 91.250 80 4 3 2929 3008 595368421 595368345 4.690000e-19 106.0
6 TraesCS2A01G398600 chr2D 93.851 2472 106 18 148 2608 507217544 507215108 0.000000e+00 3681.0
7 TraesCS2A01G398600 chr2D 75.025 981 214 27 1401 2364 507259182 507260148 3.170000e-115 425.0
8 TraesCS2A01G398600 chr2D 95.385 130 3 2 2638 2764 507215109 507214980 1.620000e-48 204.0
9 TraesCS2A01G398600 chr2D 81.343 134 22 3 6 139 127782759 127782629 4.690000e-19 106.0
10 TraesCS2A01G398600 chr2D 90.000 80 5 3 2929 3008 507214980 507214904 2.180000e-17 100.0
11 TraesCS2A01G398600 chr4A 92.308 169 13 0 2759 2927 403382572 403382404 1.230000e-59 241.0
12 TraesCS2A01G398600 chr4A 100.000 88 0 0 3347 3434 511131681 511131594 2.740000e-36 163.0
13 TraesCS2A01G398600 chr4A 100.000 86 0 0 3349 3434 535039238 535039323 3.550000e-35 159.0
14 TraesCS2A01G398600 chr5A 92.727 165 12 0 2762 2926 637052796 637052632 4.430000e-59 239.0
15 TraesCS2A01G398600 chr5A 92.638 163 11 1 2759 2920 669570143 669570305 2.060000e-57 233.0
16 TraesCS2A01G398600 chr3B 90.503 179 16 1 2763 2941 167775241 167775418 5.730000e-58 235.0
17 TraesCS2A01G398600 chr3B 90.395 177 16 1 2761 2936 495839439 495839615 7.410000e-57 231.0
18 TraesCS2A01G398600 chr7A 92.169 166 12 1 2759 2924 116450783 116450619 2.060000e-57 233.0
19 TraesCS2A01G398600 chr6A 92.593 162 12 0 2766 2927 6196583 6196422 2.060000e-57 233.0
20 TraesCS2A01G398600 chr6A 100.000 88 0 0 3347 3434 133810164 133810251 2.740000e-36 163.0
21 TraesCS2A01G398600 chr6A 100.000 86 0 0 3349 3434 339577013 339576928 3.550000e-35 159.0
22 TraesCS2A01G398600 chr7D 91.176 170 15 0 2766 2935 8245027 8244858 7.410000e-57 231.0
23 TraesCS2A01G398600 chr3A 90.286 175 17 0 2753 2927 12424255 12424429 2.670000e-56 230.0
24 TraesCS2A01G398600 chr3A 94.595 111 2 3 3325 3434 44726915 44727022 5.890000e-38 169.0
25 TraesCS2A01G398600 chr4B 100.000 89 0 0 3346 3434 217725123 217725211 7.620000e-37 165.0
26 TraesCS2A01G398600 chr7B 100.000 83 0 0 3352 3434 748202748 748202830 1.650000e-33 154.0
27 TraesCS2A01G398600 chr7B 95.506 89 3 1 3347 3434 737492 737404 1.280000e-29 141.0
28 TraesCS2A01G398600 chr5B 85.542 83 12 0 6 88 655704638 655704720 1.700000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G398600 chr2A 651820010 651823443 3433 True 6342.000000 6342 100.000000 1 3434 1 chr2A.!!$R1 3433
1 TraesCS2A01G398600 chr2A 651916171 651917146 975 False 436.000000 436 75.276000 1401 2373 1 chr2A.!!$F1 972
2 TraesCS2A01G398600 chr2B 595368345 595371200 2855 True 2023.000000 3940 91.834000 6 3008 2 chr2B.!!$R2 3002
3 TraesCS2A01G398600 chr2B 595578428 595579394 966 False 392.000000 392 74.388000 1401 2364 1 chr2B.!!$F1 963
4 TraesCS2A01G398600 chr2D 507214904 507217544 2640 True 1328.333333 3681 93.078667 148 3008 3 chr2D.!!$R2 2860
5 TraesCS2A01G398600 chr2D 507259182 507260148 966 False 425.000000 425 75.025000 1401 2364 1 chr2D.!!$F1 963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 551 0.179234 TCTTGTGCGGACAGGTTTGA 59.821 50.0 18.29 6.84 32.26 2.69 F
615 630 0.250597 AACGTTCACTGGGGTTAGCC 60.251 55.0 0.00 0.00 0.00 3.93 F
1242 1267 0.740868 TGTACGTCTACGACCTCCCG 60.741 60.0 9.86 0.00 43.02 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 1810 1.405272 GGTGGAATCCGGTCGGGTAT 61.405 60.000 9.68 0.00 37.0 2.73 R
2163 2191 1.741770 CCCTTCTTGGCCGTCTTCG 60.742 63.158 0.00 0.00 0.0 3.79 R
3167 3212 0.037697 ACACTATTTGGACGCTGCGA 60.038 50.000 30.47 5.85 0.0 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.475682 GGGATGGACGTCGTTCTAACT 59.524 52.381 9.92 0.00 0.00 2.24
62 63 3.381272 TGCTGCTGGGCTCATTATAAAAC 59.619 43.478 0.00 0.00 0.00 2.43
64 65 3.295973 TGCTGGGCTCATTATAAAACCC 58.704 45.455 0.00 7.99 37.88 4.11
65 66 3.295973 GCTGGGCTCATTATAAAACCCA 58.704 45.455 14.13 14.13 45.00 4.51
74 75 7.277760 GGCTCATTATAAAACCCAACATGTTTC 59.722 37.037 8.77 0.00 34.97 2.78
75 76 7.816995 GCTCATTATAAAACCCAACATGTTTCA 59.183 33.333 8.77 0.00 34.97 2.69
76 77 9.139174 CTCATTATAAAACCCAACATGTTTCAC 57.861 33.333 8.77 0.00 34.97 3.18
77 78 7.810282 TCATTATAAAACCCAACATGTTTCACG 59.190 33.333 8.77 0.00 34.97 4.35
114 115 7.724305 TTTTCAGTAGTACATGAACCTGAAC 57.276 36.000 0.00 0.00 35.25 3.18
128 129 1.056660 CTGAACCCCGCCATATACCT 58.943 55.000 0.00 0.00 0.00 3.08
137 138 4.505918 CCCCGCCATATACCTGTCAAAATA 60.506 45.833 0.00 0.00 0.00 1.40
141 142 5.235616 CGCCATATACCTGTCAAAATACGTT 59.764 40.000 0.00 0.00 0.00 3.99
152 153 5.645929 TGTCAAAATACGTTGCATATCCACT 59.354 36.000 0.00 0.00 0.00 4.00
176 177 5.820423 TCATACACCAAATTCTACCCATTCG 59.180 40.000 0.00 0.00 0.00 3.34
189 190 2.373169 ACCCATTCGCTGATCCATACAT 59.627 45.455 0.00 0.00 0.00 2.29
265 273 2.356780 CCCTCGCTCGGTAAACCCT 61.357 63.158 0.00 0.00 0.00 4.34
267 275 0.819582 CCTCGCTCGGTAAACCCTTA 59.180 55.000 0.00 0.00 0.00 2.69
269 277 2.470821 CTCGCTCGGTAAACCCTTATG 58.529 52.381 0.00 0.00 0.00 1.90
271 279 2.159198 TCGCTCGGTAAACCCTTATGTC 60.159 50.000 0.00 0.00 0.00 3.06
273 281 3.195661 GCTCGGTAAACCCTTATGTCAG 58.804 50.000 0.00 0.00 0.00 3.51
276 284 3.119388 TCGGTAAACCCTTATGTCAGTCG 60.119 47.826 0.00 0.00 0.00 4.18
282 290 3.097614 ACCCTTATGTCAGTCGCTACTT 58.902 45.455 0.00 0.00 31.97 2.24
292 300 1.067495 AGTCGCTACTTGCTCCTCAAC 60.067 52.381 0.00 0.00 40.11 3.18
348 356 3.722908 AAACCTAGAGCTTTTCCTCCC 57.277 47.619 0.00 0.00 32.17 4.30
372 380 3.040763 GCCGCTCGATGCCATCTC 61.041 66.667 2.75 0.00 38.78 2.75
379 387 2.203112 GATGCCATCTCGCAGCCA 60.203 61.111 0.00 0.00 43.26 4.75
381 389 4.783621 TGCCATCTCGCAGCCACC 62.784 66.667 0.00 0.00 33.92 4.61
397 405 4.776322 CCGCTCGATGCCAACCCA 62.776 66.667 0.00 0.00 38.78 4.51
422 430 0.249280 TTTTCACTGACTGCTCGCGA 60.249 50.000 9.26 9.26 0.00 5.87
452 460 0.602905 CTCGCGGGTTCAGAAAACCT 60.603 55.000 6.13 0.00 40.40 3.50
519 528 2.669569 GCAGGGACAAGCTTGCGA 60.670 61.111 26.27 0.00 0.00 5.10
530 539 2.056094 AGCTTGCGATTTTCTTGTGC 57.944 45.000 0.00 0.00 0.00 4.57
542 551 0.179234 TCTTGTGCGGACAGGTTTGA 59.821 50.000 18.29 6.84 32.26 2.69
555 564 1.202405 AGGTTTGAGCAAGCAAAACCG 60.202 47.619 24.31 0.00 44.49 4.44
556 565 1.208259 GTTTGAGCAAGCAAAACCGG 58.792 50.000 0.00 0.00 39.26 5.28
557 566 0.529555 TTTGAGCAAGCAAAACCGGC 60.530 50.000 0.00 0.00 35.03 6.13
558 567 2.429069 GAGCAAGCAAAACCGGCG 60.429 61.111 0.00 0.00 36.08 6.46
595 610 1.137872 CCATCTTGAGACGGAAGGGAG 59.862 57.143 0.00 0.00 26.45 4.30
612 627 1.345415 GGAGAACGTTCACTGGGGTTA 59.655 52.381 28.78 0.00 0.00 2.85
613 628 2.612221 GGAGAACGTTCACTGGGGTTAG 60.612 54.545 28.78 0.00 0.00 2.34
614 629 1.154197 GAACGTTCACTGGGGTTAGC 58.846 55.000 23.12 0.00 0.00 3.09
615 630 0.250597 AACGTTCACTGGGGTTAGCC 60.251 55.000 0.00 0.00 0.00 3.93
632 647 2.570284 CCCCCTTGCAAACGGTTCC 61.570 63.158 0.00 0.00 0.00 3.62
643 658 3.150767 CAAACGGTTCCCCAGATAACAA 58.849 45.455 0.00 0.00 0.00 2.83
651 666 5.340528 GGTTCCCCAGATAACAATTCCCTAA 60.341 44.000 0.00 0.00 0.00 2.69
653 668 5.293643 TCCCCAGATAACAATTCCCTAAGA 58.706 41.667 0.00 0.00 0.00 2.10
654 669 5.734140 TCCCCAGATAACAATTCCCTAAGAA 59.266 40.000 0.00 0.00 39.32 2.52
791 810 1.407437 CCACTACTCCCAATCTGCACC 60.407 57.143 0.00 0.00 0.00 5.01
856 875 2.281070 CGCATCTCCCAATCCCCG 60.281 66.667 0.00 0.00 0.00 5.73
865 884 2.812619 CCAATCCCCGCTCCTCTCC 61.813 68.421 0.00 0.00 0.00 3.71
1242 1267 0.740868 TGTACGTCTACGACCTCCCG 60.741 60.000 9.86 0.00 43.02 5.14
1299 1324 0.941463 CGCTGATGCCGATGTACTCC 60.941 60.000 0.00 0.00 35.36 3.85
1315 1340 1.536907 TCCGTTTGCCCCTACCTCA 60.537 57.895 0.00 0.00 0.00 3.86
1326 1351 1.246056 CCTACCTCACCAACGACGGA 61.246 60.000 0.00 0.00 0.00 4.69
1434 1459 2.261671 GAGCACATCGTCCACCGT 59.738 61.111 0.00 0.00 37.94 4.83
1593 1618 4.030452 GCGCTGCTTTCGTGGCTT 62.030 61.111 0.00 0.00 0.00 4.35
1785 1810 1.142965 CATGGACGTCGGCATACCA 59.857 57.895 9.92 0.21 34.57 3.25
2163 2191 2.264794 CACTGGTACCTGCCGACC 59.735 66.667 18.02 0.00 36.17 4.79
2190 2221 1.685820 CCAAGAAGGGGAGTGGTCC 59.314 63.158 0.00 0.00 43.05 4.46
2199 2230 0.175989 GGGAGTGGTCCGTCTTCATC 59.824 60.000 0.00 0.00 45.05 2.92
2316 2347 0.104304 AGATGATACCGCGGTTGGTC 59.896 55.000 38.94 29.21 42.62 4.02
2439 2470 1.087501 GGAGGAGGACGTGATTTTGC 58.912 55.000 0.00 0.00 0.00 3.68
2452 2483 2.309755 TGATTTTGCCACTGGAGAGGAT 59.690 45.455 0.00 0.00 0.00 3.24
2513 2544 6.826668 TCAGATTCCTTGTGTGAAGAGTTAA 58.173 36.000 0.00 0.00 0.00 2.01
2565 2596 6.254281 ACTTTTGACTGTGGTTGTATATGC 57.746 37.500 0.00 0.00 0.00 3.14
2742 2786 6.151663 TGCATCAAATGGAGTATGAAATGG 57.848 37.500 0.00 0.00 0.00 3.16
2743 2788 4.986659 GCATCAAATGGAGTATGAAATGGC 59.013 41.667 0.00 0.00 0.00 4.40
2763 2808 0.179001 TGGCACCTCGATCCGATCTA 60.179 55.000 6.81 0.00 34.61 1.98
2764 2809 1.178276 GGCACCTCGATCCGATCTAT 58.822 55.000 6.81 0.00 34.61 1.98
2765 2810 1.546476 GGCACCTCGATCCGATCTATT 59.454 52.381 6.81 0.00 34.61 1.73
2766 2811 2.416162 GGCACCTCGATCCGATCTATTC 60.416 54.545 6.81 0.00 34.61 1.75
2767 2812 2.416162 GCACCTCGATCCGATCTATTCC 60.416 54.545 6.81 0.00 34.61 3.01
2768 2813 2.164624 CACCTCGATCCGATCTATTCCC 59.835 54.545 6.81 0.00 34.61 3.97
2769 2814 2.041891 ACCTCGATCCGATCTATTCCCT 59.958 50.000 6.81 0.00 34.61 4.20
2770 2815 2.685897 CCTCGATCCGATCTATTCCCTC 59.314 54.545 6.81 0.00 34.61 4.30
2771 2816 2.685897 CTCGATCCGATCTATTCCCTCC 59.314 54.545 6.81 0.00 34.61 4.30
2772 2817 1.402259 CGATCCGATCTATTCCCTCCG 59.598 57.143 6.81 0.00 0.00 4.63
2773 2818 2.448453 GATCCGATCTATTCCCTCCGT 58.552 52.381 0.75 0.00 0.00 4.69
2774 2819 2.376695 TCCGATCTATTCCCTCCGTT 57.623 50.000 0.00 0.00 0.00 4.44
2775 2820 2.236766 TCCGATCTATTCCCTCCGTTC 58.763 52.381 0.00 0.00 0.00 3.95
2776 2821 2.158505 TCCGATCTATTCCCTCCGTTCT 60.159 50.000 0.00 0.00 0.00 3.01
2777 2822 2.628657 CCGATCTATTCCCTCCGTTCTT 59.371 50.000 0.00 0.00 0.00 2.52
2778 2823 3.825014 CCGATCTATTCCCTCCGTTCTTA 59.175 47.826 0.00 0.00 0.00 2.10
2779 2824 4.280174 CCGATCTATTCCCTCCGTTCTTAA 59.720 45.833 0.00 0.00 0.00 1.85
2780 2825 5.221382 CCGATCTATTCCCTCCGTTCTTAAA 60.221 44.000 0.00 0.00 0.00 1.52
2781 2826 6.456501 CGATCTATTCCCTCCGTTCTTAAAT 58.543 40.000 0.00 0.00 0.00 1.40
2782 2827 7.309621 CCGATCTATTCCCTCCGTTCTTAAATA 60.310 40.741 0.00 0.00 0.00 1.40
2783 2828 8.251721 CGATCTATTCCCTCCGTTCTTAAATAT 58.748 37.037 0.00 0.00 0.00 1.28
2784 2829 9.945904 GATCTATTCCCTCCGTTCTTAAATATT 57.054 33.333 0.00 0.00 0.00 1.28
2786 2831 9.555727 TCTATTCCCTCCGTTCTTAAATATTTG 57.444 33.333 11.05 0.00 0.00 2.32
2787 2832 9.338622 CTATTCCCTCCGTTCTTAAATATTTGT 57.661 33.333 11.05 0.00 0.00 2.83
2788 2833 7.619964 TTCCCTCCGTTCTTAAATATTTGTC 57.380 36.000 11.05 0.00 0.00 3.18
2789 2834 6.954232 TCCCTCCGTTCTTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2790 2835 7.399634 TCCCTCCGTTCTTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2791 2836 7.886446 TCCCTCCGTTCTTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2792 2837 8.182227 CCCTCCGTTCTTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
2793 2838 8.947115 CCTCCGTTCTTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
2865 2910 9.944376 TTAGAGTGTAGATTTACTCATTTTGCT 57.056 29.630 7.09 0.00 44.41 3.91
2866 2911 8.485976 AGAGTGTAGATTTACTCATTTTGCTC 57.514 34.615 7.09 0.00 44.41 4.26
2867 2912 7.550906 AGAGTGTAGATTTACTCATTTTGCTCC 59.449 37.037 7.09 0.00 44.41 4.70
2868 2913 6.313905 AGTGTAGATTTACTCATTTTGCTCCG 59.686 38.462 0.00 0.00 0.00 4.63
2869 2914 6.092259 GTGTAGATTTACTCATTTTGCTCCGT 59.908 38.462 0.00 0.00 0.00 4.69
2870 2915 7.277098 GTGTAGATTTACTCATTTTGCTCCGTA 59.723 37.037 0.00 0.00 0.00 4.02
2871 2916 7.985184 TGTAGATTTACTCATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
2872 2917 9.472361 GTAGATTTACTCATTTTGCTCCGTATA 57.528 33.333 0.00 0.00 0.00 1.47
2876 2921 9.998106 ATTTACTCATTTTGCTCCGTATATAGT 57.002 29.630 0.00 0.00 0.00 2.12
2877 2922 9.472361 TTTACTCATTTTGCTCCGTATATAGTC 57.528 33.333 0.00 0.00 0.00 2.59
2878 2923 7.050970 ACTCATTTTGCTCCGTATATAGTCA 57.949 36.000 0.00 0.00 0.00 3.41
2879 2924 7.671302 ACTCATTTTGCTCCGTATATAGTCAT 58.329 34.615 0.00 0.00 0.00 3.06
2880 2925 8.150945 ACTCATTTTGCTCCGTATATAGTCATT 58.849 33.333 0.00 0.00 0.00 2.57
2881 2926 8.902540 TCATTTTGCTCCGTATATAGTCATTT 57.097 30.769 0.00 0.00 0.00 2.32
2882 2927 9.990360 TCATTTTGCTCCGTATATAGTCATTTA 57.010 29.630 0.00 0.00 0.00 1.40
2886 2931 9.990360 TTTGCTCCGTATATAGTCATTTATTGA 57.010 29.630 0.00 0.00 0.00 2.57
2887 2932 9.990360 TTGCTCCGTATATAGTCATTTATTGAA 57.010 29.630 0.00 0.00 35.70 2.69
2888 2933 9.990360 TGCTCCGTATATAGTCATTTATTGAAA 57.010 29.630 0.00 0.00 35.70 2.69
2920 2965 9.333724 AGAAAGACAAGTATTTAAAAACGGAGA 57.666 29.630 0.00 0.00 0.00 3.71
2921 2966 9.595357 GAAAGACAAGTATTTAAAAACGGAGAG 57.405 33.333 0.00 0.00 0.00 3.20
2922 2967 8.897872 AAGACAAGTATTTAAAAACGGAGAGA 57.102 30.769 0.00 0.00 0.00 3.10
2923 2968 8.897872 AGACAAGTATTTAAAAACGGAGAGAA 57.102 30.769 0.00 0.00 0.00 2.87
2924 2969 9.503399 AGACAAGTATTTAAAAACGGAGAGAAT 57.497 29.630 0.00 0.00 0.00 2.40
2927 2972 9.704098 CAAGTATTTAAAAACGGAGAGAATAGC 57.296 33.333 0.00 0.00 0.00 2.97
2967 3012 1.151668 CAGCAGTTTCTGGTCCTTCG 58.848 55.000 0.00 0.00 40.40 3.79
2985 3030 0.747283 CGGAGTACTCCTACGGCTGT 60.747 60.000 33.70 2.42 44.22 4.40
2989 3034 0.807496 GTACTCCTACGGCTGTTCGT 59.193 55.000 1.99 0.00 45.88 3.85
2998 3043 3.787458 GCTGTTCGTAGCCAGAGC 58.213 61.111 0.00 0.00 37.73 4.09
2999 3044 1.079819 GCTGTTCGTAGCCAGAGCA 60.080 57.895 0.00 0.00 43.56 4.26
3000 3045 0.460987 GCTGTTCGTAGCCAGAGCAT 60.461 55.000 0.00 0.00 43.56 3.79
3001 3046 1.565305 CTGTTCGTAGCCAGAGCATC 58.435 55.000 0.00 0.00 43.56 3.91
3002 3047 0.894835 TGTTCGTAGCCAGAGCATCA 59.105 50.000 0.00 0.00 43.56 3.07
3003 3048 1.482182 TGTTCGTAGCCAGAGCATCAT 59.518 47.619 0.00 0.00 43.56 2.45
3005 3050 2.229675 TCGTAGCCAGAGCATCATTG 57.770 50.000 0.00 0.00 43.56 2.82
3006 3051 1.756538 TCGTAGCCAGAGCATCATTGA 59.243 47.619 0.00 0.00 43.56 2.57
3007 3052 2.366590 TCGTAGCCAGAGCATCATTGAT 59.633 45.455 0.00 0.00 43.56 2.57
3008 3053 3.136763 CGTAGCCAGAGCATCATTGATT 58.863 45.455 0.00 0.00 43.56 2.57
3009 3054 3.562973 CGTAGCCAGAGCATCATTGATTT 59.437 43.478 0.00 0.00 43.56 2.17
3010 3055 4.554134 CGTAGCCAGAGCATCATTGATTTG 60.554 45.833 0.00 0.00 43.56 2.32
3011 3056 2.693591 AGCCAGAGCATCATTGATTTGG 59.306 45.455 0.00 4.52 44.23 3.28
3012 3057 2.429610 GCCAGAGCATCATTGATTTGGT 59.570 45.455 13.51 5.32 43.52 3.67
3013 3058 3.118884 GCCAGAGCATCATTGATTTGGTT 60.119 43.478 13.51 0.00 43.52 3.67
3014 3059 4.622220 GCCAGAGCATCATTGATTTGGTTT 60.622 41.667 13.51 0.00 43.52 3.27
3015 3060 4.868171 CCAGAGCATCATTGATTTGGTTTG 59.132 41.667 0.00 0.31 38.39 2.93
3016 3061 5.336929 CCAGAGCATCATTGATTTGGTTTGA 60.337 40.000 10.07 0.00 38.39 2.69
3017 3062 5.805486 CAGAGCATCATTGATTTGGTTTGAG 59.195 40.000 0.00 0.00 37.82 3.02
3018 3063 5.479375 AGAGCATCATTGATTTGGTTTGAGT 59.521 36.000 0.00 0.00 37.82 3.41
3019 3064 6.014840 AGAGCATCATTGATTTGGTTTGAGTT 60.015 34.615 0.00 0.00 37.82 3.01
3020 3065 6.527423 AGCATCATTGATTTGGTTTGAGTTT 58.473 32.000 0.00 0.00 0.00 2.66
3021 3066 6.993902 AGCATCATTGATTTGGTTTGAGTTTT 59.006 30.769 0.00 0.00 0.00 2.43
3022 3067 7.499895 AGCATCATTGATTTGGTTTGAGTTTTT 59.500 29.630 0.00 0.00 0.00 1.94
3051 3096 6.721571 TTTCCAAGAGCTACTTAAATGTCG 57.278 37.500 0.00 0.00 37.03 4.35
3052 3097 5.654603 TCCAAGAGCTACTTAAATGTCGA 57.345 39.130 0.00 0.00 37.03 4.20
3053 3098 6.032956 TCCAAGAGCTACTTAAATGTCGAA 57.967 37.500 0.00 0.00 37.03 3.71
3054 3099 6.460781 TCCAAGAGCTACTTAAATGTCGAAA 58.539 36.000 0.00 0.00 37.03 3.46
3055 3100 6.367969 TCCAAGAGCTACTTAAATGTCGAAAC 59.632 38.462 0.00 0.00 37.03 2.78
3056 3101 6.147164 CCAAGAGCTACTTAAATGTCGAAACA 59.853 38.462 0.00 0.00 37.11 2.83
3057 3102 6.707599 AGAGCTACTTAAATGTCGAAACAC 57.292 37.500 0.00 0.00 38.48 3.32
3058 3103 5.345202 AGAGCTACTTAAATGTCGAAACACG 59.655 40.000 0.00 0.00 38.48 4.49
3059 3104 8.209973 AAGAGCTACTTAAATGTCGAAACACGA 61.210 37.037 0.00 0.00 41.91 4.35
3069 3114 3.341857 TCGAAACACGACCAAATTTGG 57.658 42.857 31.42 31.42 46.45 3.28
3081 3126 4.616181 CCAAATTTGGTACGGAGATGAC 57.384 45.455 26.34 0.00 43.43 3.06
3082 3127 4.006989 CCAAATTTGGTACGGAGATGACA 58.993 43.478 26.34 0.00 43.43 3.58
3083 3128 4.142687 CCAAATTTGGTACGGAGATGACAC 60.143 45.833 26.34 0.00 43.43 3.67
3084 3129 3.973206 ATTTGGTACGGAGATGACACA 57.027 42.857 0.00 0.00 0.00 3.72
3085 3130 3.973206 TTTGGTACGGAGATGACACAT 57.027 42.857 0.00 0.00 0.00 3.21
3086 3131 3.973206 TTGGTACGGAGATGACACATT 57.027 42.857 0.00 0.00 0.00 2.71
3087 3132 3.973206 TGGTACGGAGATGACACATTT 57.027 42.857 0.00 0.00 0.00 2.32
3088 3133 3.595173 TGGTACGGAGATGACACATTTG 58.405 45.455 0.00 0.00 0.00 2.32
3089 3134 3.259625 TGGTACGGAGATGACACATTTGA 59.740 43.478 0.00 0.00 0.00 2.69
3090 3135 3.865745 GGTACGGAGATGACACATTTGAG 59.134 47.826 0.00 0.00 0.00 3.02
3091 3136 2.350522 ACGGAGATGACACATTTGAGC 58.649 47.619 0.00 0.00 0.00 4.26
3092 3137 2.289631 ACGGAGATGACACATTTGAGCA 60.290 45.455 0.00 0.00 0.00 4.26
3093 3138 2.941064 CGGAGATGACACATTTGAGCAT 59.059 45.455 0.00 0.00 0.00 3.79
3094 3139 3.002042 CGGAGATGACACATTTGAGCATC 59.998 47.826 9.77 9.77 37.85 3.91
3095 3140 4.197750 GGAGATGACACATTTGAGCATCT 58.802 43.478 16.29 16.29 44.04 2.90
3096 3141 4.639310 GGAGATGACACATTTGAGCATCTT 59.361 41.667 16.95 7.02 42.76 2.40
3097 3142 5.448768 GGAGATGACACATTTGAGCATCTTG 60.449 44.000 16.95 0.00 42.76 3.02
3098 3143 3.564235 TGACACATTTGAGCATCTTGC 57.436 42.857 0.00 0.00 45.46 4.01
3140 3185 9.840427 ATTTTCTTACATTTTACTGTTCATCCG 57.160 29.630 0.00 0.00 0.00 4.18
3141 3186 6.417191 TCTTACATTTTACTGTTCATCCGC 57.583 37.500 0.00 0.00 0.00 5.54
3142 3187 3.740044 ACATTTTACTGTTCATCCGCG 57.260 42.857 0.00 0.00 0.00 6.46
3143 3188 2.418628 ACATTTTACTGTTCATCCGCGG 59.581 45.455 22.12 22.12 0.00 6.46
3144 3189 2.459060 TTTTACTGTTCATCCGCGGA 57.541 45.000 33.12 33.12 0.00 5.54
3145 3190 2.004583 TTTACTGTTCATCCGCGGAG 57.995 50.000 33.87 23.75 0.00 4.63
3159 3204 2.818132 GGAGCAGATGAGTCCGGG 59.182 66.667 0.00 0.00 0.00 5.73
3160 3205 1.758514 GGAGCAGATGAGTCCGGGA 60.759 63.158 0.00 0.00 0.00 5.14
3161 3206 1.739049 GAGCAGATGAGTCCGGGAG 59.261 63.158 0.00 0.00 0.00 4.30
3162 3207 2.107953 GCAGATGAGTCCGGGAGC 59.892 66.667 0.00 0.00 0.00 4.70
3163 3208 2.818132 CAGATGAGTCCGGGAGCC 59.182 66.667 0.00 0.00 0.00 4.70
3164 3209 2.060383 CAGATGAGTCCGGGAGCCA 61.060 63.158 0.00 0.00 0.00 4.75
3165 3210 1.306141 AGATGAGTCCGGGAGCCAA 60.306 57.895 0.00 0.00 0.00 4.52
3166 3211 0.909610 AGATGAGTCCGGGAGCCAAA 60.910 55.000 0.00 0.00 0.00 3.28
3167 3212 0.181350 GATGAGTCCGGGAGCCAAAT 59.819 55.000 0.00 0.00 0.00 2.32
3168 3213 0.181350 ATGAGTCCGGGAGCCAAATC 59.819 55.000 0.00 0.00 0.00 2.17
3169 3214 1.521681 GAGTCCGGGAGCCAAATCG 60.522 63.158 0.00 0.00 0.00 3.34
3170 3215 3.202706 GTCCGGGAGCCAAATCGC 61.203 66.667 0.00 0.00 0.00 4.58
3171 3216 3.711814 TCCGGGAGCCAAATCGCA 61.712 61.111 0.00 0.00 32.67 5.10
3172 3217 3.204827 CCGGGAGCCAAATCGCAG 61.205 66.667 0.00 0.00 32.67 5.18
3173 3218 3.880846 CGGGAGCCAAATCGCAGC 61.881 66.667 0.00 0.00 32.67 5.25
3174 3219 3.880846 GGGAGCCAAATCGCAGCG 61.881 66.667 9.06 9.06 32.67 5.18
3175 3220 3.127533 GGAGCCAAATCGCAGCGT 61.128 61.111 15.93 0.00 0.00 5.07
3176 3221 2.401195 GAGCCAAATCGCAGCGTC 59.599 61.111 15.93 0.00 0.00 5.19
3177 3222 3.100862 GAGCCAAATCGCAGCGTCC 62.101 63.158 15.93 0.00 0.00 4.79
3178 3223 3.430862 GCCAAATCGCAGCGTCCA 61.431 61.111 15.93 0.00 0.00 4.02
3179 3224 2.976840 GCCAAATCGCAGCGTCCAA 61.977 57.895 15.93 0.00 0.00 3.53
3180 3225 1.578926 CCAAATCGCAGCGTCCAAA 59.421 52.632 15.93 0.00 0.00 3.28
3181 3226 0.171007 CCAAATCGCAGCGTCCAAAT 59.829 50.000 15.93 0.00 0.00 2.32
3182 3227 1.400142 CCAAATCGCAGCGTCCAAATA 59.600 47.619 15.93 0.00 0.00 1.40
3183 3228 2.539547 CCAAATCGCAGCGTCCAAATAG 60.540 50.000 15.93 0.00 0.00 1.73
3184 3229 2.024176 AATCGCAGCGTCCAAATAGT 57.976 45.000 15.93 0.00 0.00 2.12
3185 3230 1.290203 ATCGCAGCGTCCAAATAGTG 58.710 50.000 15.93 0.00 0.00 2.74
3186 3231 0.037697 TCGCAGCGTCCAAATAGTGT 60.038 50.000 15.93 0.00 0.00 3.55
3187 3232 1.202817 TCGCAGCGTCCAAATAGTGTA 59.797 47.619 15.93 0.00 0.00 2.90
3188 3233 2.159156 TCGCAGCGTCCAAATAGTGTAT 60.159 45.455 15.93 0.00 0.00 2.29
3189 3234 3.067040 TCGCAGCGTCCAAATAGTGTATA 59.933 43.478 15.93 0.00 0.00 1.47
3190 3235 3.425525 CGCAGCGTCCAAATAGTGTATAG 59.574 47.826 6.65 0.00 0.00 1.31
3191 3236 4.369182 GCAGCGTCCAAATAGTGTATAGT 58.631 43.478 0.00 0.00 0.00 2.12
3192 3237 5.526115 GCAGCGTCCAAATAGTGTATAGTA 58.474 41.667 0.00 0.00 0.00 1.82
3193 3238 6.157211 GCAGCGTCCAAATAGTGTATAGTAT 58.843 40.000 0.00 0.00 0.00 2.12
3194 3239 6.308282 GCAGCGTCCAAATAGTGTATAGTATC 59.692 42.308 0.00 0.00 0.00 2.24
3195 3240 6.807230 CAGCGTCCAAATAGTGTATAGTATCC 59.193 42.308 0.00 0.00 0.00 2.59
3196 3241 6.720288 AGCGTCCAAATAGTGTATAGTATCCT 59.280 38.462 0.00 0.00 0.00 3.24
3197 3242 7.886970 AGCGTCCAAATAGTGTATAGTATCCTA 59.113 37.037 0.00 0.00 0.00 2.94
3198 3243 8.182881 GCGTCCAAATAGTGTATAGTATCCTAG 58.817 40.741 0.00 0.00 0.00 3.02
3199 3244 9.228949 CGTCCAAATAGTGTATAGTATCCTAGT 57.771 37.037 0.00 0.00 0.00 2.57
3265 3310 9.529325 TTTCTCATTAATGTTATGACTACTCGG 57.471 33.333 14.97 0.00 0.00 4.63
3266 3311 8.234136 TCTCATTAATGTTATGACTACTCGGT 57.766 34.615 14.97 0.00 0.00 4.69
3267 3312 9.346005 TCTCATTAATGTTATGACTACTCGGTA 57.654 33.333 14.97 0.00 0.00 4.02
3268 3313 9.613957 CTCATTAATGTTATGACTACTCGGTAG 57.386 37.037 14.97 8.87 41.43 3.18
3277 3322 2.022934 ACTACTCGGTAGTAAGCCTGC 58.977 52.381 13.07 0.00 45.99 4.85
3278 3323 2.022195 CTACTCGGTAGTAAGCCTGCA 58.978 52.381 0.00 0.00 37.75 4.41
3279 3324 1.486211 ACTCGGTAGTAAGCCTGCAT 58.514 50.000 0.00 0.00 32.84 3.96
3280 3325 1.831736 ACTCGGTAGTAAGCCTGCATT 59.168 47.619 0.00 0.00 32.84 3.56
3281 3326 3.028850 ACTCGGTAGTAAGCCTGCATTA 58.971 45.455 0.00 0.00 32.84 1.90
3282 3327 3.449737 ACTCGGTAGTAAGCCTGCATTAA 59.550 43.478 0.00 0.00 32.84 1.40
3283 3328 4.081309 ACTCGGTAGTAAGCCTGCATTAAA 60.081 41.667 0.00 0.00 32.84 1.52
3284 3329 4.834534 TCGGTAGTAAGCCTGCATTAAAA 58.165 39.130 0.00 0.00 0.00 1.52
3285 3330 4.873827 TCGGTAGTAAGCCTGCATTAAAAG 59.126 41.667 0.00 0.00 0.00 2.27
3286 3331 4.035208 CGGTAGTAAGCCTGCATTAAAAGG 59.965 45.833 0.00 0.00 36.58 3.11
3287 3332 4.948004 GGTAGTAAGCCTGCATTAAAAGGT 59.052 41.667 0.00 0.00 35.86 3.50
3288 3333 6.117488 GGTAGTAAGCCTGCATTAAAAGGTA 58.883 40.000 0.00 0.00 35.86 3.08
3289 3334 6.260271 GGTAGTAAGCCTGCATTAAAAGGTAG 59.740 42.308 0.00 0.00 35.86 3.18
3290 3335 6.062258 AGTAAGCCTGCATTAAAAGGTAGA 57.938 37.500 0.00 0.00 35.86 2.59
3291 3336 6.116126 AGTAAGCCTGCATTAAAAGGTAGAG 58.884 40.000 0.00 0.00 35.86 2.43
3292 3337 4.576330 AGCCTGCATTAAAAGGTAGAGT 57.424 40.909 0.00 0.00 35.86 3.24
3293 3338 4.923415 AGCCTGCATTAAAAGGTAGAGTT 58.077 39.130 0.00 0.00 35.86 3.01
3294 3339 4.944317 AGCCTGCATTAAAAGGTAGAGTTC 59.056 41.667 0.00 0.00 35.86 3.01
3295 3340 4.944317 GCCTGCATTAAAAGGTAGAGTTCT 59.056 41.667 0.00 0.00 35.86 3.01
3296 3341 5.416013 GCCTGCATTAAAAGGTAGAGTTCTT 59.584 40.000 0.00 0.00 35.86 2.52
3297 3342 6.071896 GCCTGCATTAAAAGGTAGAGTTCTTT 60.072 38.462 0.00 0.00 35.86 2.52
3298 3343 7.523873 GCCTGCATTAAAAGGTAGAGTTCTTTT 60.524 37.037 0.00 0.00 43.18 2.27
3299 3344 8.360390 CCTGCATTAAAAGGTAGAGTTCTTTTT 58.640 33.333 6.40 0.00 41.60 1.94
3318 3363 3.708563 TTTTGTAGCTGGAACAAGTGC 57.291 42.857 0.00 0.00 38.70 4.40
3319 3364 2.638480 TTGTAGCTGGAACAAGTGCT 57.362 45.000 0.00 0.00 40.48 4.40
3320 3365 2.169832 TGTAGCTGGAACAAGTGCTC 57.830 50.000 0.00 0.00 38.36 4.26
3321 3366 1.270839 TGTAGCTGGAACAAGTGCTCC 60.271 52.381 0.00 0.00 38.36 4.70
3322 3367 0.324943 TAGCTGGAACAAGTGCTCCC 59.675 55.000 0.00 0.00 38.36 4.30
3323 3368 1.073897 GCTGGAACAAGTGCTCCCT 59.926 57.895 0.00 0.00 38.70 4.20
3324 3369 0.957888 GCTGGAACAAGTGCTCCCTC 60.958 60.000 0.00 0.00 38.70 4.30
3325 3370 0.689623 CTGGAACAAGTGCTCCCTCT 59.310 55.000 0.00 0.00 38.70 3.69
3326 3371 1.902508 CTGGAACAAGTGCTCCCTCTA 59.097 52.381 0.00 0.00 38.70 2.43
3327 3372 2.503356 CTGGAACAAGTGCTCCCTCTAT 59.497 50.000 0.00 0.00 38.70 1.98
3328 3373 3.706594 CTGGAACAAGTGCTCCCTCTATA 59.293 47.826 0.00 0.00 38.70 1.31
3329 3374 3.451178 TGGAACAAGTGCTCCCTCTATAC 59.549 47.826 0.00 0.00 31.92 1.47
3330 3375 3.707102 GGAACAAGTGCTCCCTCTATACT 59.293 47.826 0.00 0.00 0.00 2.12
3331 3376 4.202172 GGAACAAGTGCTCCCTCTATACTC 60.202 50.000 0.00 0.00 0.00 2.59
3332 3377 3.301274 ACAAGTGCTCCCTCTATACTCC 58.699 50.000 0.00 0.00 0.00 3.85
3333 3378 2.630580 CAAGTGCTCCCTCTATACTCCC 59.369 54.545 0.00 0.00 0.00 4.30
3334 3379 2.148702 AGTGCTCCCTCTATACTCCCT 58.851 52.381 0.00 0.00 0.00 4.20
3335 3380 2.109304 AGTGCTCCCTCTATACTCCCTC 59.891 54.545 0.00 0.00 0.00 4.30
3336 3381 1.429687 TGCTCCCTCTATACTCCCTCC 59.570 57.143 0.00 0.00 0.00 4.30
3337 3382 1.429687 GCTCCCTCTATACTCCCTCCA 59.570 57.143 0.00 0.00 0.00 3.86
3338 3383 2.043801 GCTCCCTCTATACTCCCTCCAT 59.956 54.545 0.00 0.00 0.00 3.41
3339 3384 3.880117 GCTCCCTCTATACTCCCTCCATC 60.880 56.522 0.00 0.00 0.00 3.51
3340 3385 2.655407 TCCCTCTATACTCCCTCCATCC 59.345 54.545 0.00 0.00 0.00 3.51
3341 3386 2.383683 CCCTCTATACTCCCTCCATCCA 59.616 54.545 0.00 0.00 0.00 3.41
3342 3387 3.013417 CCCTCTATACTCCCTCCATCCAT 59.987 52.174 0.00 0.00 0.00 3.41
3343 3388 4.513680 CCCTCTATACTCCCTCCATCCATT 60.514 50.000 0.00 0.00 0.00 3.16
3344 3389 5.282298 CCCTCTATACTCCCTCCATCCATTA 60.282 48.000 0.00 0.00 0.00 1.90
3345 3390 5.896678 CCTCTATACTCCCTCCATCCATTAG 59.103 48.000 0.00 0.00 0.00 1.73
3346 3391 6.297889 CCTCTATACTCCCTCCATCCATTAGA 60.298 46.154 0.00 0.00 0.00 2.10
3347 3392 7.116089 TCTATACTCCCTCCATCCATTAGAA 57.884 40.000 0.00 0.00 0.00 2.10
3348 3393 7.185565 TCTATACTCCCTCCATCCATTAGAAG 58.814 42.308 0.00 0.00 0.00 2.85
3349 3394 4.286813 ACTCCCTCCATCCATTAGAAGA 57.713 45.455 0.00 0.00 0.00 2.87
3350 3395 4.230455 ACTCCCTCCATCCATTAGAAGAG 58.770 47.826 0.00 0.00 0.00 2.85
3351 3396 2.975489 TCCCTCCATCCATTAGAAGAGC 59.025 50.000 0.00 0.00 30.89 4.09
3352 3397 2.707791 CCCTCCATCCATTAGAAGAGCA 59.292 50.000 0.00 0.00 30.89 4.26
3353 3398 3.244491 CCCTCCATCCATTAGAAGAGCAG 60.244 52.174 0.00 0.00 30.89 4.24
3354 3399 3.390639 CCTCCATCCATTAGAAGAGCAGT 59.609 47.826 0.00 0.00 30.89 4.40
3355 3400 4.378774 CTCCATCCATTAGAAGAGCAGTG 58.621 47.826 0.00 0.00 0.00 3.66
3356 3401 2.877168 CCATCCATTAGAAGAGCAGTGC 59.123 50.000 7.13 7.13 0.00 4.40
3357 3402 3.433314 CCATCCATTAGAAGAGCAGTGCT 60.433 47.826 19.86 19.86 43.88 4.40
3358 3403 4.202295 CCATCCATTAGAAGAGCAGTGCTA 60.202 45.833 19.77 0.58 39.88 3.49
3359 3404 5.512749 CCATCCATTAGAAGAGCAGTGCTAT 60.513 44.000 19.77 13.17 39.88 2.97
3360 3405 6.295518 CCATCCATTAGAAGAGCAGTGCTATA 60.296 42.308 19.77 6.19 39.88 1.31
3361 3406 6.090483 TCCATTAGAAGAGCAGTGCTATAC 57.910 41.667 19.77 11.86 39.88 1.47
3362 3407 5.598417 TCCATTAGAAGAGCAGTGCTATACA 59.402 40.000 19.77 0.30 39.88 2.29
3382 3427 4.228451 CGATAGTGGCGGACGATG 57.772 61.111 0.00 0.00 0.00 3.84
3383 3428 1.359117 CGATAGTGGCGGACGATGT 59.641 57.895 0.00 0.00 0.00 3.06
3384 3429 0.934901 CGATAGTGGCGGACGATGTG 60.935 60.000 0.00 0.00 0.00 3.21
3385 3430 0.102481 GATAGTGGCGGACGATGTGT 59.898 55.000 0.00 0.00 0.00 3.72
3386 3431 0.179111 ATAGTGGCGGACGATGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3387 3432 2.829043 TAGTGGCGGACGATGTGTGC 62.829 60.000 0.00 0.00 35.21 4.57
3388 3433 4.306967 TGGCGGACGATGTGTGCA 62.307 61.111 0.00 0.00 39.19 4.57
3389 3434 3.788766 GGCGGACGATGTGTGCAC 61.789 66.667 10.75 10.75 39.19 4.57
3390 3435 4.134187 GCGGACGATGTGTGCACG 62.134 66.667 13.13 1.70 39.19 5.34
3391 3436 2.430075 CGGACGATGTGTGCACGA 60.430 61.111 13.13 0.93 39.19 4.35
3392 3437 2.716828 CGGACGATGTGTGCACGAC 61.717 63.158 13.13 11.94 39.19 4.34
3393 3438 1.663388 GGACGATGTGTGCACGACA 60.663 57.895 19.59 19.59 39.04 4.35
3394 3439 1.218875 GGACGATGTGTGCACGACAA 61.219 55.000 20.68 4.91 39.04 3.18
3395 3440 0.790207 GACGATGTGTGCACGACAAT 59.210 50.000 20.68 9.06 35.91 2.71
3396 3441 0.512518 ACGATGTGTGCACGACAATG 59.487 50.000 20.68 17.90 35.91 2.82
3397 3442 0.790495 CGATGTGTGCACGACAATGC 60.790 55.000 20.68 13.97 46.32 3.56
3404 3449 2.645411 GCACGACAATGCAATCAGC 58.355 52.632 0.00 0.00 45.39 4.26
3405 3450 0.169672 GCACGACAATGCAATCAGCT 59.830 50.000 0.00 0.00 45.39 4.24
3406 3451 1.792993 GCACGACAATGCAATCAGCTC 60.793 52.381 0.00 0.00 45.39 4.09
3407 3452 1.089920 ACGACAATGCAATCAGCTCC 58.910 50.000 0.00 0.00 45.94 4.70
3408 3453 0.027194 CGACAATGCAATCAGCTCCG 59.973 55.000 0.00 0.00 45.94 4.63
3409 3454 1.089920 GACAATGCAATCAGCTCCGT 58.910 50.000 0.00 0.00 45.94 4.69
3410 3455 1.063174 GACAATGCAATCAGCTCCGTC 59.937 52.381 0.00 0.00 45.94 4.79
3411 3456 0.379669 CAATGCAATCAGCTCCGTCC 59.620 55.000 0.00 0.00 45.94 4.79
3412 3457 0.035152 AATGCAATCAGCTCCGTCCA 60.035 50.000 0.00 0.00 45.94 4.02
3413 3458 0.182061 ATGCAATCAGCTCCGTCCAT 59.818 50.000 0.00 0.00 45.94 3.41
3414 3459 0.035152 TGCAATCAGCTCCGTCCATT 60.035 50.000 0.00 0.00 45.94 3.16
3415 3460 0.379669 GCAATCAGCTCCGTCCATTG 59.620 55.000 0.00 0.00 41.15 2.82
3416 3461 0.379669 CAATCAGCTCCGTCCATTGC 59.620 55.000 0.00 0.00 0.00 3.56
3417 3462 0.035152 AATCAGCTCCGTCCATTGCA 60.035 50.000 0.00 0.00 0.00 4.08
3418 3463 0.182061 ATCAGCTCCGTCCATTGCAT 59.818 50.000 0.00 0.00 0.00 3.96
3419 3464 0.745486 TCAGCTCCGTCCATTGCATG 60.745 55.000 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.434702 GACGTCCATCCCTGTCCTTAAT 59.565 50.000 3.51 0.00 0.00 1.40
1 2 1.829222 GACGTCCATCCCTGTCCTTAA 59.171 52.381 3.51 0.00 0.00 1.85
2 3 1.481871 GACGTCCATCCCTGTCCTTA 58.518 55.000 3.51 0.00 0.00 2.69
4 5 2.052690 CGACGTCCATCCCTGTCCT 61.053 63.158 10.58 0.00 0.00 3.85
9 10 1.475682 GTTAGAACGACGTCCATCCCT 59.524 52.381 10.58 3.15 0.00 4.20
11 12 2.479219 GGAGTTAGAACGACGTCCATCC 60.479 54.545 10.58 0.02 0.00 3.51
17 18 1.154338 CGCGGAGTTAGAACGACGT 60.154 57.895 0.00 0.00 36.06 4.34
45 46 4.709397 TGTTGGGTTTTATAATGAGCCCAG 59.291 41.667 10.60 0.00 45.58 4.45
46 47 4.678256 TGTTGGGTTTTATAATGAGCCCA 58.322 39.130 7.49 7.49 43.63 5.36
51 52 7.810282 CGTGAAACATGTTGGGTTTTATAATGA 59.190 33.333 12.82 0.00 38.50 2.57
62 63 1.000717 GAACCCGTGAAACATGTTGGG 60.001 52.381 23.66 23.66 42.50 4.12
64 65 3.428746 TTGAACCCGTGAAACATGTTG 57.571 42.857 12.82 0.47 35.74 3.33
65 66 3.429684 GGTTTGAACCCGTGAAACATGTT 60.430 43.478 4.92 4.92 43.43 2.71
87 88 8.322906 TCAGGTTCATGTACTACTGAAAATTG 57.677 34.615 8.34 6.97 33.45 2.32
88 89 8.784043 GTTCAGGTTCATGTACTACTGAAAATT 58.216 33.333 18.70 0.00 43.82 1.82
89 90 7.390718 GGTTCAGGTTCATGTACTACTGAAAAT 59.609 37.037 18.70 2.96 43.82 1.82
103 104 1.863155 ATGGCGGGGTTCAGGTTCAT 61.863 55.000 0.00 0.00 0.00 2.57
104 105 1.202099 TATGGCGGGGTTCAGGTTCA 61.202 55.000 0.00 0.00 0.00 3.18
114 115 0.762418 TTGACAGGTATATGGCGGGG 59.238 55.000 0.00 0.00 0.00 5.73
128 129 5.645929 AGTGGATATGCAACGTATTTTGACA 59.354 36.000 0.00 0.00 0.00 3.58
137 138 4.119862 GTGTATGAGTGGATATGCAACGT 58.880 43.478 0.00 0.86 0.00 3.99
141 142 4.769345 TTGGTGTATGAGTGGATATGCA 57.231 40.909 0.00 0.00 0.00 3.96
152 153 5.820423 CGAATGGGTAGAATTTGGTGTATGA 59.180 40.000 0.00 0.00 0.00 2.15
176 177 1.800805 CCGGTCATGTATGGATCAGC 58.199 55.000 0.00 0.00 0.00 4.26
276 284 1.634702 CGAGTTGAGGAGCAAGTAGC 58.365 55.000 0.00 0.00 40.20 3.58
282 290 2.650116 GGGAGCGAGTTGAGGAGCA 61.650 63.158 0.00 0.00 0.00 4.26
311 319 2.555325 GGTTTAGGTTTAGGTGGTGTGC 59.445 50.000 0.00 0.00 0.00 4.57
397 405 3.002656 CGAGCAGTCAGTGAAAACATGTT 59.997 43.478 4.92 4.92 0.00 2.71
434 442 0.882927 CAGGTTTTCTGAACCCGCGA 60.883 55.000 8.23 0.00 46.18 5.87
452 460 2.285024 CCGGACCCTAAACCCGTCA 61.285 63.158 0.00 0.00 41.53 4.35
489 498 3.697747 CCTGCCCCCGTCAACGTA 61.698 66.667 1.48 0.00 37.74 3.57
500 509 3.376918 GCAAGCTTGTCCCTGCCC 61.377 66.667 26.55 4.56 0.00 5.36
510 519 2.397549 GCACAAGAAAATCGCAAGCTT 58.602 42.857 0.00 0.00 37.18 3.74
511 520 1.664016 CGCACAAGAAAATCGCAAGCT 60.664 47.619 0.00 0.00 37.18 3.74
519 528 1.981256 ACCTGTCCGCACAAGAAAAT 58.019 45.000 0.00 0.00 29.82 1.82
530 539 1.165907 TGCTTGCTCAAACCTGTCCG 61.166 55.000 0.00 0.00 0.00 4.79
542 551 3.977244 CCGCCGGTTTTGCTTGCT 61.977 61.111 1.90 0.00 0.00 3.91
558 567 2.732016 GCAACCGGGACAAAACCC 59.268 61.111 6.32 0.00 45.92 4.11
595 610 1.154197 GCTAACCCCAGTGAACGTTC 58.846 55.000 21.42 21.42 0.00 3.95
612 627 3.749284 AACCGTTTGCAAGGGGGCT 62.749 57.895 19.22 3.68 40.69 5.19
613 628 3.220999 GAACCGTTTGCAAGGGGGC 62.221 63.158 19.22 9.37 40.69 5.80
614 629 2.570284 GGAACCGTTTGCAAGGGGG 61.570 63.158 19.22 14.75 40.69 5.40
615 630 2.570284 GGGAACCGTTTGCAAGGGG 61.570 63.158 19.22 16.87 40.86 4.79
632 647 7.954666 TTTTCTTAGGGAATTGTTATCTGGG 57.045 36.000 0.00 0.00 33.53 4.45
643 658 4.695928 GCTCGACACTTTTTCTTAGGGAAT 59.304 41.667 0.00 0.00 33.53 3.01
791 810 2.113774 TGCTGTGCTGGGGAAGTG 59.886 61.111 0.00 0.00 0.00 3.16
856 875 2.787567 GCAGTACGGGGAGAGGAGC 61.788 68.421 0.00 0.00 0.00 4.70
915 940 1.821332 GATTTGAGGCGAGCTGGGG 60.821 63.158 0.00 0.00 0.00 4.96
1128 1153 1.973812 GGTGGAGGCAAGCTTGGAC 60.974 63.158 27.10 11.78 0.00 4.02
1210 1235 4.446413 GTACACGAGCCCACCCCG 62.446 72.222 0.00 0.00 0.00 5.73
1299 1324 1.376812 GGTGAGGTAGGGGCAAACG 60.377 63.158 0.00 0.00 0.00 3.60
1593 1618 3.433453 TAGTACGGCTGCGCGTGA 61.433 61.111 20.94 7.98 0.00 4.35
1785 1810 1.405272 GGTGGAATCCGGTCGGGTAT 61.405 60.000 9.68 0.00 37.00 2.73
2163 2191 1.741770 CCCTTCTTGGCCGTCTTCG 60.742 63.158 0.00 0.00 0.00 3.79
2190 2221 4.589967 TCGCGATCGATGAAGACG 57.410 55.556 21.57 11.05 40.21 4.18
2403 2434 3.880846 CAATTCCGCCGCTGCTCC 61.881 66.667 0.00 0.00 34.43 4.70
2439 2470 2.304180 ACAGTTTGATCCTCTCCAGTGG 59.696 50.000 1.40 1.40 0.00 4.00
2452 2483 9.820725 AAAAGAATGATCATTTTGACAGTTTGA 57.179 25.926 21.57 0.00 0.00 2.69
2513 2544 8.462016 GGCTACAAGTTGAGATTGTTCAATATT 58.538 33.333 10.54 0.00 41.08 1.28
2519 2550 5.948992 AAGGCTACAAGTTGAGATTGTTC 57.051 39.130 10.54 0.00 41.08 3.18
2529 2560 6.038271 CACAGTCAAAAGTAAGGCTACAAGTT 59.962 38.462 0.00 0.00 0.00 2.66
2608 2639 5.072741 ACTCCACAATTTCATACACTTGCT 58.927 37.500 0.00 0.00 0.00 3.91
2618 2649 6.833416 CCCCATAAATAGACTCCACAATTTCA 59.167 38.462 0.00 0.00 0.00 2.69
2742 2786 3.157217 ATCGGATCGAGGTGCCAGC 62.157 63.158 0.00 0.00 39.91 4.85
2743 2788 1.006805 GATCGGATCGAGGTGCCAG 60.007 63.158 1.62 0.00 39.91 4.85
2763 2808 8.053355 AGACAAATATTTAAGAACGGAGGGAAT 58.947 33.333 0.00 0.00 0.00 3.01
2764 2809 7.399634 AGACAAATATTTAAGAACGGAGGGAA 58.600 34.615 0.00 0.00 0.00 3.97
2765 2810 6.954232 AGACAAATATTTAAGAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2766 2811 7.625828 AAGACAAATATTTAAGAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
2767 2812 8.947115 AGAAAGACAAATATTTAAGAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
2839 2884 9.944376 AGCAAAATGAGTAAATCTACACTCTAA 57.056 29.630 3.65 0.00 41.46 2.10
2840 2885 9.587772 GAGCAAAATGAGTAAATCTACACTCTA 57.412 33.333 3.65 0.00 41.46 2.43
2841 2886 7.550906 GGAGCAAAATGAGTAAATCTACACTCT 59.449 37.037 3.65 0.00 41.46 3.24
2842 2887 7.464710 CGGAGCAAAATGAGTAAATCTACACTC 60.465 40.741 0.00 0.00 41.31 3.51
2843 2888 6.313905 CGGAGCAAAATGAGTAAATCTACACT 59.686 38.462 0.00 0.00 0.00 3.55
2844 2889 6.092259 ACGGAGCAAAATGAGTAAATCTACAC 59.908 38.462 0.00 0.00 0.00 2.90
2845 2890 6.170506 ACGGAGCAAAATGAGTAAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
2846 2891 6.663944 ACGGAGCAAAATGAGTAAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
2850 2895 9.998106 ACTATATACGGAGCAAAATGAGTAAAT 57.002 29.630 0.00 0.00 0.00 1.40
2851 2896 9.472361 GACTATATACGGAGCAAAATGAGTAAA 57.528 33.333 0.00 0.00 0.00 2.01
2852 2897 8.635328 TGACTATATACGGAGCAAAATGAGTAA 58.365 33.333 0.00 0.00 0.00 2.24
2853 2898 8.173542 TGACTATATACGGAGCAAAATGAGTA 57.826 34.615 0.00 0.00 0.00 2.59
2854 2899 7.050970 TGACTATATACGGAGCAAAATGAGT 57.949 36.000 0.00 0.00 0.00 3.41
2855 2900 8.539770 AATGACTATATACGGAGCAAAATGAG 57.460 34.615 0.00 0.00 0.00 2.90
2856 2901 8.902540 AAATGACTATATACGGAGCAAAATGA 57.097 30.769 0.00 0.00 0.00 2.57
2860 2905 9.990360 TCAATAAATGACTATATACGGAGCAAA 57.010 29.630 0.00 0.00 31.50 3.68
2861 2906 9.990360 TTCAATAAATGACTATATACGGAGCAA 57.010 29.630 0.00 0.00 37.92 3.91
2862 2907 9.990360 TTTCAATAAATGACTATATACGGAGCA 57.010 29.630 0.00 0.00 37.92 4.26
2894 2939 9.333724 TCTCCGTTTTTAAATACTTGTCTTTCT 57.666 29.630 7.12 0.00 0.00 2.52
2895 2940 9.595357 CTCTCCGTTTTTAAATACTTGTCTTTC 57.405 33.333 7.12 0.00 0.00 2.62
2896 2941 9.333724 TCTCTCCGTTTTTAAATACTTGTCTTT 57.666 29.630 7.12 0.00 0.00 2.52
2897 2942 8.897872 TCTCTCCGTTTTTAAATACTTGTCTT 57.102 30.769 7.12 0.00 0.00 3.01
2898 2943 8.897872 TTCTCTCCGTTTTTAAATACTTGTCT 57.102 30.769 7.12 0.00 0.00 3.41
2901 2946 9.704098 GCTATTCTCTCCGTTTTTAAATACTTG 57.296 33.333 7.12 0.00 0.00 3.16
2902 2947 9.444600 TGCTATTCTCTCCGTTTTTAAATACTT 57.555 29.630 7.12 0.00 0.00 2.24
2903 2948 9.444600 TTGCTATTCTCTCCGTTTTTAAATACT 57.555 29.630 7.12 0.00 0.00 2.12
2904 2949 9.704098 CTTGCTATTCTCTCCGTTTTTAAATAC 57.296 33.333 0.00 0.00 0.00 1.89
2905 2950 8.395633 GCTTGCTATTCTCTCCGTTTTTAAATA 58.604 33.333 0.00 0.00 0.00 1.40
2906 2951 7.094377 TGCTTGCTATTCTCTCCGTTTTTAAAT 60.094 33.333 0.00 0.00 0.00 1.40
2907 2952 6.205853 TGCTTGCTATTCTCTCCGTTTTTAAA 59.794 34.615 0.00 0.00 0.00 1.52
2908 2953 5.703592 TGCTTGCTATTCTCTCCGTTTTTAA 59.296 36.000 0.00 0.00 0.00 1.52
2909 2954 5.242434 TGCTTGCTATTCTCTCCGTTTTTA 58.758 37.500 0.00 0.00 0.00 1.52
2910 2955 4.072131 TGCTTGCTATTCTCTCCGTTTTT 58.928 39.130 0.00 0.00 0.00 1.94
2911 2956 3.674997 TGCTTGCTATTCTCTCCGTTTT 58.325 40.909 0.00 0.00 0.00 2.43
2912 2957 3.334583 TGCTTGCTATTCTCTCCGTTT 57.665 42.857 0.00 0.00 0.00 3.60
2913 2958 3.201290 CATGCTTGCTATTCTCTCCGTT 58.799 45.455 0.00 0.00 0.00 4.44
2914 2959 2.169352 ACATGCTTGCTATTCTCTCCGT 59.831 45.455 0.00 0.00 0.00 4.69
2915 2960 2.831333 ACATGCTTGCTATTCTCTCCG 58.169 47.619 0.00 0.00 0.00 4.63
2916 2961 4.513318 GGTAACATGCTTGCTATTCTCTCC 59.487 45.833 0.00 0.00 0.00 3.71
2917 2962 5.118990 TGGTAACATGCTTGCTATTCTCTC 58.881 41.667 0.00 0.00 46.17 3.20
2918 2963 5.102953 TGGTAACATGCTTGCTATTCTCT 57.897 39.130 0.00 0.00 46.17 3.10
2985 3030 2.168313 TCAATGATGCTCTGGCTACGAA 59.832 45.455 0.00 0.00 39.59 3.85
2989 3034 3.887110 CCAAATCAATGATGCTCTGGCTA 59.113 43.478 0.00 0.00 39.59 3.93
2993 3038 5.716094 TCAAACCAAATCAATGATGCTCTG 58.284 37.500 0.00 0.00 0.00 3.35
2997 3042 6.790285 AAACTCAAACCAAATCAATGATGC 57.210 33.333 0.00 0.00 0.00 3.91
3026 3071 7.442969 TCGACATTTAAGTAGCTCTTGGAAAAA 59.557 33.333 0.00 0.00 37.56 1.94
3027 3072 6.932400 TCGACATTTAAGTAGCTCTTGGAAAA 59.068 34.615 0.00 0.00 37.56 2.29
3028 3073 6.460781 TCGACATTTAAGTAGCTCTTGGAAA 58.539 36.000 0.00 0.00 37.56 3.13
3029 3074 6.032956 TCGACATTTAAGTAGCTCTTGGAA 57.967 37.500 0.00 0.00 37.56 3.53
3030 3075 5.654603 TCGACATTTAAGTAGCTCTTGGA 57.345 39.130 0.00 0.00 37.56 3.53
3031 3076 6.147164 TGTTTCGACATTTAAGTAGCTCTTGG 59.853 38.462 0.00 0.00 37.56 3.61
3032 3077 7.010023 GTGTTTCGACATTTAAGTAGCTCTTG 58.990 38.462 0.00 0.00 37.56 3.02
3033 3078 6.128902 CGTGTTTCGACATTTAAGTAGCTCTT 60.129 38.462 0.00 0.00 42.86 2.85
3034 3079 5.345202 CGTGTTTCGACATTTAAGTAGCTCT 59.655 40.000 0.00 0.00 42.86 4.09
3035 3080 5.344128 TCGTGTTTCGACATTTAAGTAGCTC 59.656 40.000 0.00 0.00 44.01 4.09
3036 3081 5.224888 TCGTGTTTCGACATTTAAGTAGCT 58.775 37.500 0.00 0.00 44.01 3.32
3037 3082 5.505165 TCGTGTTTCGACATTTAAGTAGC 57.495 39.130 0.00 0.00 44.01 3.58
3049 3094 3.341857 CCAAATTTGGTCGTGTTTCGA 57.658 42.857 26.34 0.00 43.43 3.71
3061 3106 4.454161 TGTGTCATCTCCGTACCAAATTTG 59.546 41.667 11.40 11.40 0.00 2.32
3062 3107 4.647611 TGTGTCATCTCCGTACCAAATTT 58.352 39.130 0.00 0.00 0.00 1.82
3063 3108 4.280436 TGTGTCATCTCCGTACCAAATT 57.720 40.909 0.00 0.00 0.00 1.82
3064 3109 3.973206 TGTGTCATCTCCGTACCAAAT 57.027 42.857 0.00 0.00 0.00 2.32
3065 3110 3.973206 ATGTGTCATCTCCGTACCAAA 57.027 42.857 0.00 0.00 0.00 3.28
3066 3111 3.973206 AATGTGTCATCTCCGTACCAA 57.027 42.857 0.00 0.00 0.00 3.67
3067 3112 3.259625 TCAAATGTGTCATCTCCGTACCA 59.740 43.478 0.00 0.00 0.00 3.25
3068 3113 3.857052 TCAAATGTGTCATCTCCGTACC 58.143 45.455 0.00 0.00 0.00 3.34
3069 3114 3.307242 GCTCAAATGTGTCATCTCCGTAC 59.693 47.826 0.00 0.00 0.00 3.67
3070 3115 3.056179 TGCTCAAATGTGTCATCTCCGTA 60.056 43.478 0.00 0.00 0.00 4.02
3071 3116 2.289631 TGCTCAAATGTGTCATCTCCGT 60.290 45.455 0.00 0.00 0.00 4.69
3072 3117 2.349590 TGCTCAAATGTGTCATCTCCG 58.650 47.619 0.00 0.00 0.00 4.63
3073 3118 4.197750 AGATGCTCAAATGTGTCATCTCC 58.802 43.478 13.84 0.00 39.57 3.71
3074 3119 5.570344 CAAGATGCTCAAATGTGTCATCTC 58.430 41.667 17.55 1.00 41.14 2.75
3075 3120 4.142447 GCAAGATGCTCAAATGTGTCATCT 60.142 41.667 13.84 13.84 42.41 2.90
3076 3121 4.103357 GCAAGATGCTCAAATGTGTCATC 58.897 43.478 10.79 10.79 40.96 2.92
3077 3122 3.508402 TGCAAGATGCTCAAATGTGTCAT 59.492 39.130 3.78 0.00 45.31 3.06
3078 3123 2.885894 TGCAAGATGCTCAAATGTGTCA 59.114 40.909 3.78 0.00 45.31 3.58
3079 3124 3.564235 TGCAAGATGCTCAAATGTGTC 57.436 42.857 3.78 0.00 45.31 3.67
3080 3125 3.845178 CATGCAAGATGCTCAAATGTGT 58.155 40.909 3.78 0.00 45.31 3.72
3081 3126 2.603110 GCATGCAAGATGCTCAAATGTG 59.397 45.455 14.21 0.00 45.31 3.21
3082 3127 2.232696 TGCATGCAAGATGCTCAAATGT 59.767 40.909 20.30 0.00 45.31 2.71
3083 3128 2.887337 TGCATGCAAGATGCTCAAATG 58.113 42.857 20.30 0.58 45.31 2.32
3084 3129 3.819564 ATGCATGCAAGATGCTCAAAT 57.180 38.095 26.68 0.00 45.31 2.32
3085 3130 4.929819 ATATGCATGCAAGATGCTCAAA 57.070 36.364 26.68 0.00 45.31 2.69
3086 3131 4.929819 AATATGCATGCAAGATGCTCAA 57.070 36.364 26.68 0.00 45.31 3.02
3087 3132 4.929819 AAATATGCATGCAAGATGCTCA 57.070 36.364 26.68 0.00 45.31 4.26
3114 3159 9.840427 CGGATGAACAGTAAAATGTAAGAAAAT 57.160 29.630 0.00 0.00 31.70 1.82
3115 3160 7.806014 GCGGATGAACAGTAAAATGTAAGAAAA 59.194 33.333 0.00 0.00 31.70 2.29
3116 3161 7.302524 GCGGATGAACAGTAAAATGTAAGAAA 58.697 34.615 0.00 0.00 31.70 2.52
3117 3162 6.401688 CGCGGATGAACAGTAAAATGTAAGAA 60.402 38.462 0.00 0.00 31.70 2.52
3118 3163 5.062934 CGCGGATGAACAGTAAAATGTAAGA 59.937 40.000 0.00 0.00 31.70 2.10
3119 3164 5.255596 CGCGGATGAACAGTAAAATGTAAG 58.744 41.667 0.00 0.00 31.70 2.34
3120 3165 4.093703 CCGCGGATGAACAGTAAAATGTAA 59.906 41.667 24.07 0.00 31.70 2.41
3121 3166 3.619483 CCGCGGATGAACAGTAAAATGTA 59.381 43.478 24.07 0.00 31.70 2.29
3122 3167 2.418628 CCGCGGATGAACAGTAAAATGT 59.581 45.455 24.07 0.00 33.96 2.71
3123 3168 2.675844 TCCGCGGATGAACAGTAAAATG 59.324 45.455 27.28 0.00 0.00 2.32
3124 3169 2.936498 CTCCGCGGATGAACAGTAAAAT 59.064 45.455 31.19 0.00 0.00 1.82
3125 3170 2.343101 CTCCGCGGATGAACAGTAAAA 58.657 47.619 31.19 0.27 0.00 1.52
3126 3171 2.004583 CTCCGCGGATGAACAGTAAA 57.995 50.000 31.19 0.52 0.00 2.01
3127 3172 0.459585 GCTCCGCGGATGAACAGTAA 60.460 55.000 31.19 1.15 0.00 2.24
3128 3173 1.141019 GCTCCGCGGATGAACAGTA 59.859 57.895 31.19 2.04 0.00 2.74
3129 3174 2.125512 GCTCCGCGGATGAACAGT 60.126 61.111 31.19 0.00 0.00 3.55
3130 3175 2.125552 TGCTCCGCGGATGAACAG 60.126 61.111 31.19 17.24 0.00 3.16
3131 3176 2.125552 CTGCTCCGCGGATGAACA 60.126 61.111 31.19 22.10 37.02 3.18
3132 3177 2.184322 TCTGCTCCGCGGATGAAC 59.816 61.111 31.19 18.64 39.19 3.18
3138 3183 2.279120 GACTCATCTGCTCCGCGG 60.279 66.667 22.12 22.12 36.06 6.46
3139 3184 2.279120 GGACTCATCTGCTCCGCG 60.279 66.667 0.00 0.00 0.00 6.46
3140 3185 2.279120 CGGACTCATCTGCTCCGC 60.279 66.667 0.00 0.00 40.52 5.54
3141 3186 2.415010 CCGGACTCATCTGCTCCG 59.585 66.667 0.00 1.54 45.49 4.63
3142 3187 1.743321 CTCCCGGACTCATCTGCTCC 61.743 65.000 0.73 0.00 0.00 4.70
3143 3188 1.739049 CTCCCGGACTCATCTGCTC 59.261 63.158 0.73 0.00 0.00 4.26
3144 3189 2.430610 GCTCCCGGACTCATCTGCT 61.431 63.158 0.73 0.00 0.00 4.24
3145 3190 2.107953 GCTCCCGGACTCATCTGC 59.892 66.667 0.73 0.00 0.00 4.26
3146 3191 1.617018 TTGGCTCCCGGACTCATCTG 61.617 60.000 0.73 0.00 0.00 2.90
3147 3192 0.909610 TTTGGCTCCCGGACTCATCT 60.910 55.000 0.73 0.00 0.00 2.90
3148 3193 0.181350 ATTTGGCTCCCGGACTCATC 59.819 55.000 0.73 0.00 0.00 2.92
3149 3194 0.181350 GATTTGGCTCCCGGACTCAT 59.819 55.000 0.73 0.00 0.00 2.90
3150 3195 1.602237 GATTTGGCTCCCGGACTCA 59.398 57.895 0.73 0.00 0.00 3.41
3151 3196 1.521681 CGATTTGGCTCCCGGACTC 60.522 63.158 0.73 0.00 0.00 3.36
3152 3197 2.584608 CGATTTGGCTCCCGGACT 59.415 61.111 0.73 0.00 0.00 3.85
3153 3198 3.202706 GCGATTTGGCTCCCGGAC 61.203 66.667 0.73 0.00 0.00 4.79
3154 3199 3.680620 CTGCGATTTGGCTCCCGGA 62.681 63.158 0.73 0.00 0.00 5.14
3155 3200 3.204827 CTGCGATTTGGCTCCCGG 61.205 66.667 0.00 0.00 0.00 5.73
3156 3201 3.880846 GCTGCGATTTGGCTCCCG 61.881 66.667 0.00 0.00 0.00 5.14
3157 3202 3.880846 CGCTGCGATTTGGCTCCC 61.881 66.667 18.66 0.00 0.00 4.30
3158 3203 3.100862 GACGCTGCGATTTGGCTCC 62.101 63.158 30.47 2.20 0.00 4.70
3159 3204 2.401195 GACGCTGCGATTTGGCTC 59.599 61.111 30.47 10.02 0.00 4.70
3160 3205 3.127533 GGACGCTGCGATTTGGCT 61.128 61.111 30.47 3.45 0.00 4.75
3161 3206 2.470801 TTTGGACGCTGCGATTTGGC 62.471 55.000 30.47 9.75 0.00 4.52
3162 3207 0.171007 ATTTGGACGCTGCGATTTGG 59.829 50.000 30.47 0.00 0.00 3.28
3163 3208 2.095853 ACTATTTGGACGCTGCGATTTG 59.904 45.455 30.47 11.66 0.00 2.32
3164 3209 2.095853 CACTATTTGGACGCTGCGATTT 59.904 45.455 30.47 6.12 0.00 2.17
3165 3210 1.665679 CACTATTTGGACGCTGCGATT 59.334 47.619 30.47 7.02 0.00 3.34
3166 3211 1.290203 CACTATTTGGACGCTGCGAT 58.710 50.000 30.47 13.62 0.00 4.58
3167 3212 0.037697 ACACTATTTGGACGCTGCGA 60.038 50.000 30.47 5.85 0.00 5.10
3168 3213 1.635844 TACACTATTTGGACGCTGCG 58.364 50.000 21.91 21.91 0.00 5.18
3169 3214 4.369182 ACTATACACTATTTGGACGCTGC 58.631 43.478 0.00 0.00 0.00 5.25
3170 3215 6.807230 GGATACTATACACTATTTGGACGCTG 59.193 42.308 0.00 0.00 0.00 5.18
3171 3216 6.921914 GGATACTATACACTATTTGGACGCT 58.078 40.000 0.00 0.00 0.00 5.07
3239 3284 9.529325 CCGAGTAGTCATAACATTAATGAGAAA 57.471 33.333 22.16 4.60 0.00 2.52
3240 3285 8.692710 ACCGAGTAGTCATAACATTAATGAGAA 58.307 33.333 22.16 6.98 0.00 2.87
3241 3286 8.234136 ACCGAGTAGTCATAACATTAATGAGA 57.766 34.615 22.16 9.22 0.00 3.27
3242 3287 9.613957 CTACCGAGTAGTCATAACATTAATGAG 57.386 37.037 22.16 8.66 32.09 2.90
3243 3288 9.128404 ACTACCGAGTAGTCATAACATTAATGA 57.872 33.333 22.16 0.55 44.86 2.57
3247 3292 8.562892 GCTTACTACCGAGTAGTCATAACATTA 58.437 37.037 16.71 0.00 44.86 1.90
3248 3293 7.424001 GCTTACTACCGAGTAGTCATAACATT 58.576 38.462 16.71 0.00 44.86 2.71
3249 3294 6.016443 GGCTTACTACCGAGTAGTCATAACAT 60.016 42.308 16.71 0.00 44.86 2.71
3250 3295 5.297776 GGCTTACTACCGAGTAGTCATAACA 59.702 44.000 16.71 0.73 44.86 2.41
3251 3296 5.530543 AGGCTTACTACCGAGTAGTCATAAC 59.469 44.000 16.71 8.08 44.86 1.89
3252 3297 5.530171 CAGGCTTACTACCGAGTAGTCATAA 59.470 44.000 16.71 8.17 44.86 1.90
3253 3298 5.061853 CAGGCTTACTACCGAGTAGTCATA 58.938 45.833 16.71 6.67 44.86 2.15
3254 3299 3.884091 CAGGCTTACTACCGAGTAGTCAT 59.116 47.826 16.71 2.69 44.86 3.06
3255 3300 3.276857 CAGGCTTACTACCGAGTAGTCA 58.723 50.000 16.71 8.34 44.86 3.41
3256 3301 2.033174 GCAGGCTTACTACCGAGTAGTC 59.967 54.545 16.71 6.47 44.86 2.59
3258 3303 2.022195 TGCAGGCTTACTACCGAGTAG 58.978 52.381 8.87 8.87 39.36 2.57
3259 3304 2.133281 TGCAGGCTTACTACCGAGTA 57.867 50.000 0.00 0.00 37.10 2.59
3260 3305 1.486211 ATGCAGGCTTACTACCGAGT 58.514 50.000 0.00 0.00 39.92 4.18
3261 3306 2.604046 AATGCAGGCTTACTACCGAG 57.396 50.000 0.00 0.00 0.00 4.63
3262 3307 4.475051 TTTAATGCAGGCTTACTACCGA 57.525 40.909 0.00 0.00 0.00 4.69
3263 3308 4.035208 CCTTTTAATGCAGGCTTACTACCG 59.965 45.833 0.00 0.00 0.00 4.02
3264 3309 4.948004 ACCTTTTAATGCAGGCTTACTACC 59.052 41.667 0.00 0.00 32.79 3.18
3265 3310 7.046033 TCTACCTTTTAATGCAGGCTTACTAC 58.954 38.462 0.00 0.00 32.79 2.73
3266 3311 7.093024 ACTCTACCTTTTAATGCAGGCTTACTA 60.093 37.037 0.00 0.00 32.79 1.82
3267 3312 6.062258 TCTACCTTTTAATGCAGGCTTACT 57.938 37.500 0.00 0.00 32.79 2.24
3268 3313 5.880887 ACTCTACCTTTTAATGCAGGCTTAC 59.119 40.000 0.00 0.00 32.79 2.34
3269 3314 6.062258 ACTCTACCTTTTAATGCAGGCTTA 57.938 37.500 0.00 0.00 32.79 3.09
3270 3315 4.923415 ACTCTACCTTTTAATGCAGGCTT 58.077 39.130 0.00 0.00 32.79 4.35
3271 3316 4.576330 ACTCTACCTTTTAATGCAGGCT 57.424 40.909 0.00 0.00 32.79 4.58
3272 3317 4.944317 AGAACTCTACCTTTTAATGCAGGC 59.056 41.667 0.00 0.00 32.79 4.85
3273 3318 7.454260 AAAGAACTCTACCTTTTAATGCAGG 57.546 36.000 0.00 0.00 36.10 4.85
3297 3342 3.699038 AGCACTTGTTCCAGCTACAAAAA 59.301 39.130 2.37 0.00 35.28 1.94
3298 3343 3.287222 AGCACTTGTTCCAGCTACAAAA 58.713 40.909 2.37 0.00 35.28 2.44
3299 3344 2.878406 GAGCACTTGTTCCAGCTACAAA 59.122 45.455 2.37 0.00 37.48 2.83
3300 3345 2.494059 GAGCACTTGTTCCAGCTACAA 58.506 47.619 0.83 0.83 37.48 2.41
3301 3346 1.270839 GGAGCACTTGTTCCAGCTACA 60.271 52.381 7.21 0.00 43.82 2.74
3302 3347 1.443802 GGAGCACTTGTTCCAGCTAC 58.556 55.000 7.21 0.00 43.82 3.58
3303 3348 0.324943 GGGAGCACTTGTTCCAGCTA 59.675 55.000 13.46 0.00 45.85 3.32
3304 3349 1.073897 GGGAGCACTTGTTCCAGCT 59.926 57.895 13.46 0.00 45.85 4.24
3305 3350 0.957888 GAGGGAGCACTTGTTCCAGC 60.958 60.000 13.46 1.87 45.85 4.85
3306 3351 0.689623 AGAGGGAGCACTTGTTCCAG 59.310 55.000 13.46 0.00 45.85 3.86
3307 3352 2.024176 TAGAGGGAGCACTTGTTCCA 57.976 50.000 13.46 0.00 45.85 3.53
3308 3353 3.707102 AGTATAGAGGGAGCACTTGTTCC 59.293 47.826 3.58 3.58 43.68 3.62
3309 3354 4.202172 GGAGTATAGAGGGAGCACTTGTTC 60.202 50.000 0.00 0.00 0.00 3.18
3310 3355 3.707102 GGAGTATAGAGGGAGCACTTGTT 59.293 47.826 0.00 0.00 0.00 2.83
3311 3356 3.301274 GGAGTATAGAGGGAGCACTTGT 58.699 50.000 0.00 0.00 0.00 3.16
3312 3357 2.630580 GGGAGTATAGAGGGAGCACTTG 59.369 54.545 0.00 0.00 0.00 3.16
3313 3358 2.520549 AGGGAGTATAGAGGGAGCACTT 59.479 50.000 0.00 0.00 0.00 3.16
3314 3359 2.109304 GAGGGAGTATAGAGGGAGCACT 59.891 54.545 0.00 0.00 0.00 4.40
3315 3360 2.521126 GAGGGAGTATAGAGGGAGCAC 58.479 57.143 0.00 0.00 0.00 4.40
3316 3361 1.429687 GGAGGGAGTATAGAGGGAGCA 59.570 57.143 0.00 0.00 0.00 4.26
3317 3362 1.429687 TGGAGGGAGTATAGAGGGAGC 59.570 57.143 0.00 0.00 0.00 4.70
3318 3363 3.309556 GGATGGAGGGAGTATAGAGGGAG 60.310 56.522 0.00 0.00 0.00 4.30
3319 3364 2.655407 GGATGGAGGGAGTATAGAGGGA 59.345 54.545 0.00 0.00 0.00 4.20
3320 3365 2.383683 TGGATGGAGGGAGTATAGAGGG 59.616 54.545 0.00 0.00 0.00 4.30
3321 3366 3.835478 TGGATGGAGGGAGTATAGAGG 57.165 52.381 0.00 0.00 0.00 3.69
3322 3367 6.736581 TCTAATGGATGGAGGGAGTATAGAG 58.263 44.000 0.00 0.00 0.00 2.43
3323 3368 6.736561 TCTAATGGATGGAGGGAGTATAGA 57.263 41.667 0.00 0.00 0.00 1.98
3324 3369 7.185565 TCTTCTAATGGATGGAGGGAGTATAG 58.814 42.308 0.00 0.00 0.00 1.31
3325 3370 7.116089 TCTTCTAATGGATGGAGGGAGTATA 57.884 40.000 0.00 0.00 0.00 1.47
3326 3371 5.982391 TCTTCTAATGGATGGAGGGAGTAT 58.018 41.667 0.00 0.00 0.00 2.12
3327 3372 5.398236 CTCTTCTAATGGATGGAGGGAGTA 58.602 45.833 0.00 0.00 0.00 2.59
3328 3373 4.230455 CTCTTCTAATGGATGGAGGGAGT 58.770 47.826 0.00 0.00 0.00 3.85
3329 3374 3.007831 GCTCTTCTAATGGATGGAGGGAG 59.992 52.174 0.00 0.00 0.00 4.30
3330 3375 2.975489 GCTCTTCTAATGGATGGAGGGA 59.025 50.000 0.00 0.00 0.00 4.20
3331 3376 2.707791 TGCTCTTCTAATGGATGGAGGG 59.292 50.000 0.00 0.00 0.00 4.30
3332 3377 3.390639 ACTGCTCTTCTAATGGATGGAGG 59.609 47.826 0.00 0.00 0.00 4.30
3333 3378 4.378774 CACTGCTCTTCTAATGGATGGAG 58.621 47.826 0.00 0.00 0.00 3.86
3334 3379 3.432749 GCACTGCTCTTCTAATGGATGGA 60.433 47.826 0.00 0.00 0.00 3.41
3335 3380 2.877168 GCACTGCTCTTCTAATGGATGG 59.123 50.000 0.00 0.00 0.00 3.51
3336 3381 3.806380 AGCACTGCTCTTCTAATGGATG 58.194 45.455 0.00 0.00 30.62 3.51
3337 3382 5.822132 ATAGCACTGCTCTTCTAATGGAT 57.178 39.130 6.86 0.00 40.44 3.41
3338 3383 5.598417 TGTATAGCACTGCTCTTCTAATGGA 59.402 40.000 6.86 0.00 40.44 3.41
3339 3384 5.694006 GTGTATAGCACTGCTCTTCTAATGG 59.306 44.000 6.86 0.00 44.41 3.16
3340 3385 6.761731 GTGTATAGCACTGCTCTTCTAATG 57.238 41.667 6.86 0.00 44.41 1.90
3354 3399 2.287368 CGCCACTATCGTGTGTATAGCA 60.287 50.000 0.00 0.00 39.55 3.49
3355 3400 2.316792 CGCCACTATCGTGTGTATAGC 58.683 52.381 0.00 0.00 39.55 2.97
3356 3401 2.551032 TCCGCCACTATCGTGTGTATAG 59.449 50.000 0.00 0.00 39.55 1.31
3357 3402 2.291465 GTCCGCCACTATCGTGTGTATA 59.709 50.000 0.00 0.00 39.55 1.47
3358 3403 1.066605 GTCCGCCACTATCGTGTGTAT 59.933 52.381 0.00 0.00 39.55 2.29
3359 3404 0.452987 GTCCGCCACTATCGTGTGTA 59.547 55.000 0.00 0.00 39.55 2.90
3360 3405 1.214589 GTCCGCCACTATCGTGTGT 59.785 57.895 0.00 0.00 39.55 3.72
3361 3406 1.872234 CGTCCGCCACTATCGTGTG 60.872 63.158 0.00 0.00 39.55 3.82
3362 3407 1.381928 ATCGTCCGCCACTATCGTGT 61.382 55.000 0.00 0.00 39.55 4.49
3363 3408 0.934901 CATCGTCCGCCACTATCGTG 60.935 60.000 0.00 0.00 40.89 4.35
3364 3409 1.359117 CATCGTCCGCCACTATCGT 59.641 57.895 0.00 0.00 0.00 3.73
3365 3410 0.934901 CACATCGTCCGCCACTATCG 60.935 60.000 0.00 0.00 0.00 2.92
3366 3411 0.102481 ACACATCGTCCGCCACTATC 59.898 55.000 0.00 0.00 0.00 2.08
3367 3412 0.179111 CACACATCGTCCGCCACTAT 60.179 55.000 0.00 0.00 0.00 2.12
3368 3413 1.214325 CACACATCGTCCGCCACTA 59.786 57.895 0.00 0.00 0.00 2.74
3369 3414 2.048222 CACACATCGTCCGCCACT 60.048 61.111 0.00 0.00 0.00 4.00
3370 3415 3.788766 GCACACATCGTCCGCCAC 61.789 66.667 0.00 0.00 0.00 5.01
3371 3416 4.306967 TGCACACATCGTCCGCCA 62.307 61.111 0.00 0.00 0.00 5.69
3372 3417 3.788766 GTGCACACATCGTCCGCC 61.789 66.667 13.17 0.00 0.00 6.13
3373 3418 4.134187 CGTGCACACATCGTCCGC 62.134 66.667 18.64 0.00 0.00 5.54
3374 3419 2.430075 TCGTGCACACATCGTCCG 60.430 61.111 18.64 0.00 0.00 4.79
3375 3420 1.218875 TTGTCGTGCACACATCGTCC 61.219 55.000 18.64 0.00 33.41 4.79
3376 3421 0.790207 ATTGTCGTGCACACATCGTC 59.210 50.000 18.64 0.62 33.41 4.20
3377 3422 0.512518 CATTGTCGTGCACACATCGT 59.487 50.000 18.64 7.05 33.41 3.73
3378 3423 0.790495 GCATTGTCGTGCACACATCG 60.790 55.000 18.64 13.72 44.43 3.84
3379 3424 3.005823 GCATTGTCGTGCACACATC 57.994 52.632 18.64 8.75 44.43 3.06
3386 3431 0.169672 AGCTGATTGCATTGTCGTGC 59.830 50.000 0.00 0.00 45.94 5.34
3387 3432 1.202110 GGAGCTGATTGCATTGTCGTG 60.202 52.381 0.00 0.00 45.94 4.35
3388 3433 1.089920 GGAGCTGATTGCATTGTCGT 58.910 50.000 0.00 0.00 45.94 4.34
3389 3434 0.027194 CGGAGCTGATTGCATTGTCG 59.973 55.000 0.00 0.00 45.94 4.35
3390 3435 1.063174 GACGGAGCTGATTGCATTGTC 59.937 52.381 0.00 0.00 45.94 3.18
3391 3436 1.089920 GACGGAGCTGATTGCATTGT 58.910 50.000 0.00 0.00 45.94 2.71
3392 3437 0.379669 GGACGGAGCTGATTGCATTG 59.620 55.000 0.00 0.00 45.94 2.82
3393 3438 0.035152 TGGACGGAGCTGATTGCATT 60.035 50.000 0.00 0.00 45.94 3.56
3394 3439 0.182061 ATGGACGGAGCTGATTGCAT 59.818 50.000 0.00 0.00 45.94 3.96
3395 3440 0.035152 AATGGACGGAGCTGATTGCA 60.035 50.000 0.00 0.00 45.94 4.08
3396 3441 0.379669 CAATGGACGGAGCTGATTGC 59.620 55.000 0.00 0.00 43.29 3.56
3397 3442 0.379669 GCAATGGACGGAGCTGATTG 59.620 55.000 0.00 0.00 0.00 2.67
3398 3443 0.035152 TGCAATGGACGGAGCTGATT 60.035 50.000 0.00 0.00 0.00 2.57
3399 3444 0.182061 ATGCAATGGACGGAGCTGAT 59.818 50.000 0.00 0.00 0.00 2.90
3400 3445 0.745486 CATGCAATGGACGGAGCTGA 60.745 55.000 0.00 0.00 41.79 4.26
3401 3446 1.725665 CATGCAATGGACGGAGCTG 59.274 57.895 0.00 0.00 41.79 4.24
3402 3447 4.230603 CATGCAATGGACGGAGCT 57.769 55.556 0.00 0.00 41.79 4.09
3413 3458 1.108132 TGTCTGCTGTTGCCATGCAA 61.108 50.000 0.00 0.00 46.80 4.08
3414 3459 1.520600 CTGTCTGCTGTTGCCATGCA 61.521 55.000 0.00 0.00 38.71 3.96
3415 3460 1.211969 CTGTCTGCTGTTGCCATGC 59.788 57.895 0.00 0.00 38.71 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.