Multiple sequence alignment - TraesCS2A01G398500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G398500 chr2A 100.000 3437 0 0 1 3437 651800546 651803982 0.000000e+00 6348.0
1 TraesCS2A01G398500 chr2D 92.405 2291 103 27 473 2755 507048818 507051045 0.000000e+00 3201.0
2 TraesCS2A01G398500 chr2D 89.766 342 24 8 141 477 507048378 507048713 8.810000e-116 427.0
3 TraesCS2A01G398500 chr2D 82.627 472 29 24 2990 3437 507051315 507051757 5.420000e-98 368.0
4 TraesCS2A01G398500 chr2D 85.714 63 6 1 89 148 507048291 507048353 2.860000e-06 63.9
5 TraesCS2A01G398500 chr2B 93.235 2025 83 23 874 2868 595125161 595127161 0.000000e+00 2931.0
6 TraesCS2A01G398500 chr2B 90.969 454 23 4 2983 3425 595127952 595128398 2.280000e-166 595.0
7 TraesCS2A01G398500 chr2B 88.535 314 24 8 169 476 595124276 595124583 1.510000e-98 370.0
8 TraesCS2A01G398500 chr2B 82.462 325 39 9 473 797 595124662 595124968 5.650000e-68 268.0
9 TraesCS2A01G398500 chr2B 85.185 54 6 2 1 53 755013387 755013439 2.000000e-03 54.7
10 TraesCS2A01G398500 chr7A 97.959 98 2 0 1 98 59429967 59429870 1.640000e-38 171.0
11 TraesCS2A01G398500 chr7A 98.851 87 1 0 1 87 704616142 704616228 4.590000e-34 156.0
12 TraesCS2A01G398500 chr3B 97.895 95 2 0 1 95 503981130 503981224 7.630000e-37 165.0
13 TraesCS2A01G398500 chr6B 95.890 73 3 0 1 73 41563714 41563786 6.030000e-23 119.0
14 TraesCS2A01G398500 chr4B 96.491 57 2 0 1 57 659527415 659527359 1.020000e-15 95.3
15 TraesCS2A01G398500 chr3A 97.059 34 1 0 1 34 617919294 617919261 1.330000e-04 58.4
16 TraesCS2A01G398500 chr1B 100.000 28 0 0 1 28 585531617 585531644 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G398500 chr2A 651800546 651803982 3436 False 6348.000 6348 100.00000 1 3437 1 chr2A.!!$F1 3436
1 TraesCS2A01G398500 chr2D 507048291 507051757 3466 False 1014.975 3201 87.62800 89 3437 4 chr2D.!!$F1 3348
2 TraesCS2A01G398500 chr2B 595124276 595128398 4122 False 1041.000 2931 88.80025 169 3425 4 chr2B.!!$F2 3256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.249911 GGCTGTCGTTTGACTGGAGT 60.250 55.0 4.79 0.00 45.7 3.85 F
352 390 0.534427 ACAGGAGCCATCGATGCATG 60.534 55.0 20.25 15.79 0.0 4.06 F
727 881 0.682852 TCACCGTTCCGAAAGTCCAT 59.317 50.0 0.00 0.00 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2309 0.170561 CCACGGAGAGGTCGTACTTG 59.829 60.0 0.0 0.0 38.94 3.16 R
2229 2552 0.595567 TCGGTTTCGTCTTGTCGTGG 60.596 55.0 0.0 0.0 37.69 4.94 R
2518 2850 0.527113 TGTGAGCATTTCAATGGCCG 59.473 50.0 0.0 0.0 37.61 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.583593 GCAGTCGCCATCTCCGTC 60.584 66.667 0.00 0.00 0.00 4.79
60 61 2.278206 CAGTCGCCATCTCCGTCG 60.278 66.667 0.00 0.00 0.00 5.12
61 62 4.194720 AGTCGCCATCTCCGTCGC 62.195 66.667 0.00 0.00 0.00 5.19
73 74 4.409588 CGTCGCGGCTGTCGTTTG 62.410 66.667 9.90 0.00 41.72 2.93
74 75 3.033764 GTCGCGGCTGTCGTTTGA 61.034 61.111 1.90 0.00 41.72 2.69
75 76 3.033764 TCGCGGCTGTCGTTTGAC 61.034 61.111 6.13 0.00 45.71 3.18
76 77 3.036084 CGCGGCTGTCGTTTGACT 61.036 61.111 2.76 0.00 45.70 3.41
77 78 2.551270 GCGGCTGTCGTTTGACTG 59.449 61.111 2.76 0.00 45.70 3.51
78 79 2.954753 GCGGCTGTCGTTTGACTGG 61.955 63.158 2.76 0.00 45.70 4.00
79 80 1.300620 CGGCTGTCGTTTGACTGGA 60.301 57.895 0.00 0.00 45.70 3.86
80 81 1.284982 CGGCTGTCGTTTGACTGGAG 61.285 60.000 0.00 0.00 45.70 3.86
81 82 0.249911 GGCTGTCGTTTGACTGGAGT 60.250 55.000 4.79 0.00 45.70 3.85
82 83 1.583054 GCTGTCGTTTGACTGGAGTT 58.417 50.000 4.79 0.00 45.70 3.01
83 84 1.940613 GCTGTCGTTTGACTGGAGTTT 59.059 47.619 4.79 0.00 45.70 2.66
84 85 2.354821 GCTGTCGTTTGACTGGAGTTTT 59.645 45.455 4.79 0.00 45.70 2.43
85 86 3.788797 GCTGTCGTTTGACTGGAGTTTTG 60.789 47.826 4.79 0.00 45.70 2.44
86 87 2.096819 TGTCGTTTGACTGGAGTTTTGC 59.903 45.455 0.00 0.00 45.70 3.68
87 88 2.096819 GTCGTTTGACTGGAGTTTTGCA 59.903 45.455 0.00 0.00 42.08 4.08
88 89 2.948979 TCGTTTGACTGGAGTTTTGCAT 59.051 40.909 0.00 0.00 0.00 3.96
89 90 3.380004 TCGTTTGACTGGAGTTTTGCATT 59.620 39.130 0.00 0.00 0.00 3.56
90 91 4.111916 CGTTTGACTGGAGTTTTGCATTT 58.888 39.130 0.00 0.00 0.00 2.32
91 92 4.026640 CGTTTGACTGGAGTTTTGCATTTG 60.027 41.667 0.00 0.00 0.00 2.32
92 93 3.096489 TGACTGGAGTTTTGCATTTGC 57.904 42.857 0.00 0.00 42.50 3.68
93 94 2.224018 TGACTGGAGTTTTGCATTTGCC 60.224 45.455 0.00 0.00 41.18 4.52
94 95 1.070601 ACTGGAGTTTTGCATTTGCCC 59.929 47.619 0.00 0.00 41.18 5.36
95 96 1.070445 CTGGAGTTTTGCATTTGCCCA 59.930 47.619 0.00 0.00 41.18 5.36
96 97 1.070445 TGGAGTTTTGCATTTGCCCAG 59.930 47.619 0.00 0.00 41.18 4.45
100 101 0.835941 TTTTGCATTTGCCCAGTGGT 59.164 45.000 8.74 0.00 41.18 4.16
107 108 1.859302 TTTGCCCAGTGGTTGTCTTT 58.141 45.000 8.74 0.00 0.00 2.52
136 137 3.838317 ACATGTCTCTTGCCCACTACTAA 59.162 43.478 0.00 0.00 0.00 2.24
137 138 3.955650 TGTCTCTTGCCCACTACTAAC 57.044 47.619 0.00 0.00 0.00 2.34
138 139 3.507411 TGTCTCTTGCCCACTACTAACT 58.493 45.455 0.00 0.00 0.00 2.24
139 140 3.510360 TGTCTCTTGCCCACTACTAACTC 59.490 47.826 0.00 0.00 0.00 3.01
155 191 7.866393 ACTACTAACTCGCATGTAAATGGATAC 59.134 37.037 0.00 0.00 0.00 2.24
176 212 4.759782 ACATTGTATCACTGAGGCACTAC 58.240 43.478 0.00 0.00 41.55 2.73
352 390 0.534427 ACAGGAGCCATCGATGCATG 60.534 55.000 20.25 15.79 0.00 4.06
359 397 1.739707 GCCATCGATGCATGCCAAAAA 60.740 47.619 20.25 0.00 0.00 1.94
402 440 5.116180 CCGAGGAAATATCAGCTTACACAA 58.884 41.667 0.00 0.00 0.00 3.33
419 457 4.699522 AGGGAGGCGCGTCCAAAC 62.700 66.667 40.50 27.46 38.52 2.93
454 499 4.215399 CAGAAATAAAACTCAACGCCAGGA 59.785 41.667 0.00 0.00 0.00 3.86
545 699 6.038714 CCTCATTTCTCCTAGTAAACCAATGC 59.961 42.308 0.00 0.00 0.00 3.56
621 775 7.645058 AAACAGCAAATGCCTATGTTATACT 57.355 32.000 10.64 0.00 43.38 2.12
622 776 6.624352 ACAGCAAATGCCTATGTTATACTG 57.376 37.500 0.94 0.00 43.38 2.74
625 779 7.226720 ACAGCAAATGCCTATGTTATACTGTAC 59.773 37.037 0.94 0.00 43.38 2.90
626 780 7.442364 CAGCAAATGCCTATGTTATACTGTACT 59.558 37.037 0.94 0.00 43.38 2.73
674 828 1.503347 AGGGGAATCCACAAAAGTGGT 59.497 47.619 3.57 0.00 44.53 4.16
707 861 7.581213 TCTTTGATTTTGGTGTATTGTCTGT 57.419 32.000 0.00 0.00 0.00 3.41
717 871 3.185797 GTGTATTGTCTGTTCACCGTTCC 59.814 47.826 0.00 0.00 0.00 3.62
721 875 1.134759 TGTCTGTTCACCGTTCCGAAA 60.135 47.619 0.00 0.00 0.00 3.46
727 881 0.682852 TCACCGTTCCGAAAGTCCAT 59.317 50.000 0.00 0.00 0.00 3.41
742 896 8.391106 CCGAAAGTCCATAGTTTATTGAGAAAG 58.609 37.037 0.00 0.00 0.00 2.62
743 897 8.391106 CGAAAGTCCATAGTTTATTGAGAAAGG 58.609 37.037 0.00 0.00 0.00 3.11
756 910 5.530519 TTGAGAAAGGTCGAAAATCATCG 57.469 39.130 0.00 0.00 44.04 3.84
761 915 4.766404 AAGGTCGAAAATCATCGCTTTT 57.234 36.364 0.00 0.00 42.44 2.27
793 947 7.445096 TCATATCCACGTGCTAAAATGAATGAT 59.555 33.333 10.91 5.45 0.00 2.45
812 966 7.927092 TGAATGATAAATATGCACATGGTTTGG 59.073 33.333 0.00 0.00 0.00 3.28
853 1148 8.073768 GTGGTGAATGAATTTTAAAAGACGAGA 58.926 33.333 6.79 0.00 0.00 4.04
854 1149 8.073768 TGGTGAATGAATTTTAAAAGACGAGAC 58.926 33.333 6.79 0.00 0.00 3.36
855 1150 7.537649 GGTGAATGAATTTTAAAAGACGAGACC 59.462 37.037 6.79 3.93 0.00 3.85
856 1151 8.073768 GTGAATGAATTTTAAAAGACGAGACCA 58.926 33.333 6.79 0.00 0.00 4.02
857 1152 8.625651 TGAATGAATTTTAAAAGACGAGACCAA 58.374 29.630 6.79 0.00 0.00 3.67
858 1153 9.458374 GAATGAATTTTAAAAGACGAGACCAAA 57.542 29.630 6.79 0.00 0.00 3.28
859 1154 9.981114 AATGAATTTTAAAAGACGAGACCAAAT 57.019 25.926 6.79 0.00 0.00 2.32
860 1155 9.626045 ATGAATTTTAAAAGACGAGACCAAATC 57.374 29.630 6.79 0.00 0.00 2.17
861 1156 8.846211 TGAATTTTAAAAGACGAGACCAAATCT 58.154 29.630 6.79 0.00 41.91 2.40
862 1157 9.678941 GAATTTTAAAAGACGAGACCAAATCTT 57.321 29.630 6.79 0.00 38.00 2.40
865 1160 9.863845 TTTTAAAAGACGAGACCAAATCTTTTT 57.136 25.926 14.08 0.00 44.87 1.94
866 1161 8.850454 TTAAAAGACGAGACCAAATCTTTTTG 57.150 30.769 14.08 0.00 44.87 2.44
867 1162 6.693315 AAAGACGAGACCAAATCTTTTTGA 57.307 33.333 0.00 0.00 44.11 2.69
868 1163 6.693315 AAGACGAGACCAAATCTTTTTGAA 57.307 33.333 0.00 0.00 44.11 2.69
869 1164 6.884280 AGACGAGACCAAATCTTTTTGAAT 57.116 33.333 0.00 0.00 44.11 2.57
870 1165 7.277174 AGACGAGACCAAATCTTTTTGAATT 57.723 32.000 0.00 0.00 44.11 2.17
871 1166 7.716612 AGACGAGACCAAATCTTTTTGAATTT 58.283 30.769 0.00 0.00 44.11 1.82
872 1167 8.197439 AGACGAGACCAAATCTTTTTGAATTTT 58.803 29.630 0.00 0.00 44.11 1.82
873 1168 8.130307 ACGAGACCAAATCTTTTTGAATTTTG 57.870 30.769 0.00 0.00 44.11 2.44
874 1169 7.978975 ACGAGACCAAATCTTTTTGAATTTTGA 59.021 29.630 0.00 0.00 44.11 2.69
875 1170 8.268738 CGAGACCAAATCTTTTTGAATTTTGAC 58.731 33.333 0.19 0.00 44.11 3.18
876 1171 8.130307 AGACCAAATCTTTTTGAATTTTGACG 57.870 30.769 0.19 0.00 44.11 4.35
877 1172 7.978975 AGACCAAATCTTTTTGAATTTTGACGA 59.021 29.630 0.00 0.00 44.11 4.20
878 1173 8.130307 ACCAAATCTTTTTGAATTTTGACGAG 57.870 30.769 0.00 0.00 44.11 4.18
990 1290 4.514585 GTGCCCCACACCACACCA 62.515 66.667 0.00 0.00 44.02 4.17
991 1291 4.514585 TGCCCCACACCACACCAC 62.515 66.667 0.00 0.00 0.00 4.16
1050 1365 1.903404 GCCTCAACCCAACCCACAG 60.903 63.158 0.00 0.00 0.00 3.66
1186 1509 3.965026 CTCCTCCTCCTGGCCGTGA 62.965 68.421 0.00 0.00 0.00 4.35
1191 1514 3.322466 CTCCTGGCCGTGACCCTT 61.322 66.667 0.00 0.00 0.00 3.95
1364 1687 4.899239 CGCCATGTCCTCCCTCGC 62.899 72.222 0.00 0.00 0.00 5.03
1623 1946 2.683933 TCCGTCAAGGAGGAGCCC 60.684 66.667 0.00 0.00 45.98 5.19
1686 2009 3.412408 GGCCTCTTCACCTCCCCC 61.412 72.222 0.00 0.00 0.00 5.40
1722 2045 4.838486 CTCACCGCGCTCCTCGAC 62.838 72.222 5.56 0.00 41.67 4.20
1873 2196 1.817099 GATCTGGGCAAGCTCACCG 60.817 63.158 0.00 0.00 0.00 4.94
1908 2231 2.507102 CTGCTGGAGTACCACGCG 60.507 66.667 3.53 3.53 41.77 6.01
1909 2232 4.735132 TGCTGGAGTACCACGCGC 62.735 66.667 5.73 0.00 41.77 6.86
2499 2831 0.942252 CATGATGTGATGCACTCCGG 59.058 55.000 0.00 0.00 35.11 5.14
2502 2834 1.148157 GATGTGATGCACTCCGGTCG 61.148 60.000 0.00 0.00 35.11 4.79
2518 2850 1.659335 TCGTGGTTGCGAGTTCGTC 60.659 57.895 3.27 0.00 42.22 4.20
2536 2868 0.810648 TCGGCCATTGAAATGCTCAC 59.189 50.000 2.24 0.00 35.08 3.51
2537 2869 0.527113 CGGCCATTGAAATGCTCACA 59.473 50.000 2.24 0.00 35.08 3.58
2539 2871 1.404583 GGCCATTGAAATGCTCACACC 60.405 52.381 0.00 0.00 35.08 4.16
2540 2872 1.404583 GCCATTGAAATGCTCACACCC 60.405 52.381 0.00 0.00 35.08 4.61
2541 2873 1.135315 CCATTGAAATGCTCACACCCG 60.135 52.381 0.00 0.00 35.08 5.28
2542 2874 1.811965 CATTGAAATGCTCACACCCGA 59.188 47.619 0.00 0.00 32.21 5.14
2543 2875 1.974265 TTGAAATGCTCACACCCGAA 58.026 45.000 0.00 0.00 32.21 4.30
2544 2876 1.522668 TGAAATGCTCACACCCGAAG 58.477 50.000 0.00 0.00 0.00 3.79
2545 2877 0.169009 GAAATGCTCACACCCGAAGC 59.831 55.000 0.00 0.00 0.00 3.86
2593 2925 1.594331 GGCGATTGTGATACCTTCCC 58.406 55.000 0.00 0.00 0.00 3.97
2594 2926 1.141053 GGCGATTGTGATACCTTCCCT 59.859 52.381 0.00 0.00 0.00 4.20
2595 2927 2.213499 GCGATTGTGATACCTTCCCTG 58.787 52.381 0.00 0.00 0.00 4.45
2596 2928 2.838736 CGATTGTGATACCTTCCCTGG 58.161 52.381 0.00 0.00 0.00 4.45
2597 2929 2.170607 CGATTGTGATACCTTCCCTGGT 59.829 50.000 0.00 0.00 43.66 4.00
2598 2930 3.386726 CGATTGTGATACCTTCCCTGGTA 59.613 47.826 0.00 0.00 45.44 3.25
2611 2943 3.170717 TCCCTGGTACTGGTAGTTTCAG 58.829 50.000 0.00 0.00 46.69 3.02
2663 2995 4.912214 TGATTTTGCTATGATGCTCGTTG 58.088 39.130 0.00 0.00 0.00 4.10
2704 3036 1.704628 TCCATCTGCCAAGAACTCCAA 59.295 47.619 0.00 0.00 35.59 3.53
2718 3050 5.934781 AGAACTCCAATTCCATATCCTGAC 58.065 41.667 0.00 0.00 0.00 3.51
2756 3088 7.451429 CATTCTCGATGAAGTAACTTGTGAAG 58.549 38.462 0.00 0.00 38.03 3.02
2762 3094 6.306837 CGATGAAGTAACTTGTGAAGAGAGAC 59.693 42.308 0.00 0.00 0.00 3.36
2770 3102 6.418057 ACTTGTGAAGAGAGACTTGATCTT 57.582 37.500 0.00 0.00 38.00 2.40
2771 3103 7.531857 ACTTGTGAAGAGAGACTTGATCTTA 57.468 36.000 0.00 0.00 38.00 2.10
2772 3104 7.375053 ACTTGTGAAGAGAGACTTGATCTTAC 58.625 38.462 0.00 0.00 38.00 2.34
2778 3110 7.279090 TGAAGAGAGACTTGATCTTACTACGAG 59.721 40.741 0.00 0.00 38.00 4.18
2804 3136 5.581126 ATTGATGCATTGGTTCGTTGTAT 57.419 34.783 0.00 0.00 0.00 2.29
2806 3138 6.691754 TTGATGCATTGGTTCGTTGTATAT 57.308 33.333 0.00 0.00 0.00 0.86
2831 3176 5.896922 TCACCGTTTTTGCACATTAATTG 57.103 34.783 0.00 0.00 0.00 2.32
2832 3177 5.592054 TCACCGTTTTTGCACATTAATTGA 58.408 33.333 0.00 0.00 0.00 2.57
2834 3179 6.145209 TCACCGTTTTTGCACATTAATTGATG 59.855 34.615 8.57 8.57 0.00 3.07
2840 3186 8.863049 GTTTTTGCACATTAATTGATGGAGTAG 58.137 33.333 14.10 1.20 0.00 2.57
2868 3214 4.779987 CACATTGCACCATCGATTGATAG 58.220 43.478 3.08 0.00 32.18 2.08
2871 3217 3.558931 TGCACCATCGATTGATAGGTT 57.441 42.857 3.08 0.40 35.29 3.50
2872 3218 3.884895 TGCACCATCGATTGATAGGTTT 58.115 40.909 3.08 0.00 35.29 3.27
2873 3219 4.269183 TGCACCATCGATTGATAGGTTTT 58.731 39.130 3.08 0.00 35.29 2.43
2874 3220 4.704540 TGCACCATCGATTGATAGGTTTTT 59.295 37.500 3.08 0.00 35.29 1.94
2900 3246 6.384258 TTTTTGAGACAAACCATCGATTGA 57.616 33.333 3.08 0.00 0.00 2.57
2901 3247 6.573664 TTTTGAGACAAACCATCGATTGAT 57.426 33.333 3.08 0.00 34.28 2.57
2902 3248 7.680442 TTTTGAGACAAACCATCGATTGATA 57.320 32.000 3.08 0.00 32.18 2.15
2903 3249 6.908870 TTGAGACAAACCATCGATTGATAG 57.091 37.500 3.08 0.00 32.18 2.08
2904 3250 5.359756 TGAGACAAACCATCGATTGATAGG 58.640 41.667 3.08 0.03 32.18 2.57
2905 3251 5.104941 TGAGACAAACCATCGATTGATAGGT 60.105 40.000 3.08 0.72 37.50 3.08
2906 3252 5.118990 AGACAAACCATCGATTGATAGGTG 58.881 41.667 14.31 5.66 36.64 4.00
2907 3253 4.843728 ACAAACCATCGATTGATAGGTGT 58.156 39.130 14.31 8.74 36.64 4.16
2933 3283 1.851065 ATGGCCAAAAATGGGGTGCC 61.851 55.000 10.96 0.00 39.33 5.01
2955 3305 1.069258 GGCCTACTGGATGCGTACC 59.931 63.158 0.00 0.00 34.57 3.34
2956 3306 1.069258 GCCTACTGGATGCGTACCC 59.931 63.158 0.00 0.00 34.57 3.69
2968 3358 0.663153 GCGTACCCATCCATGAAAGC 59.337 55.000 0.00 0.00 0.00 3.51
2972 3362 1.843368 ACCCATCCATGAAAGCACTG 58.157 50.000 0.00 0.00 0.00 3.66
2975 3365 1.134367 CCATCCATGAAAGCACTGCTG 59.866 52.381 3.73 0.00 39.62 4.41
3089 4202 1.151777 ATAAATGCAGACCGGACGCG 61.152 55.000 9.46 3.53 0.00 6.01
3093 4206 3.807538 GCAGACCGGACGCGTCTA 61.808 66.667 35.50 0.00 38.54 2.59
3094 4207 2.403987 CAGACCGGACGCGTCTAG 59.596 66.667 35.50 28.05 38.54 2.43
3095 4208 2.046507 AGACCGGACGCGTCTAGT 60.047 61.111 35.50 30.76 38.82 2.57
3097 4210 0.179062 AGACCGGACGCGTCTAGTAT 60.179 55.000 35.50 26.36 38.82 2.12
3101 4214 1.596464 CCGGACGCGTCTAGTATCAAC 60.596 57.143 35.50 16.48 0.00 3.18
3102 4215 1.596464 CGGACGCGTCTAGTATCAACC 60.596 57.143 35.50 16.78 0.00 3.77
3103 4216 1.402968 GGACGCGTCTAGTATCAACCA 59.597 52.381 35.50 0.00 0.00 3.67
3104 4217 2.448219 GACGCGTCTAGTATCAACCAC 58.552 52.381 31.12 0.00 0.00 4.16
3113 4226 5.581085 GTCTAGTATCAACCACAAAATCGCT 59.419 40.000 0.00 0.00 0.00 4.93
3152 4265 2.361865 GGTGGCGCAATGGGGTTA 60.362 61.111 10.83 0.00 0.00 2.85
3153 4266 1.979693 GGTGGCGCAATGGGGTTAA 60.980 57.895 10.83 0.00 0.00 2.01
3193 4306 9.519905 CGAAATTTCAAAACATATCTTTTGCTG 57.480 29.630 17.99 0.00 39.84 4.41
3255 4368 2.677875 CAGCCTTGGTTCAGGGGC 60.678 66.667 0.00 0.00 44.38 5.80
3332 4445 1.900245 TGCCTTCCTTTTACCCGTTC 58.100 50.000 0.00 0.00 0.00 3.95
3391 4514 2.823147 AGCTCGCATGGCTCTTGC 60.823 61.111 0.00 3.84 34.70 4.01
3402 4525 2.109126 GCTCTTGCCCATGGTCGTC 61.109 63.158 11.73 0.00 0.00 4.20
3417 4540 0.537653 TCGTCCGTTGGATGCCAATA 59.462 50.000 1.79 0.00 45.80 1.90
3433 4556 3.489738 GCCAATATCTTCAGCAATGCGTT 60.490 43.478 0.00 0.00 0.00 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.583593 GACGGAGATGGCGACTGC 60.584 66.667 0.00 0.00 41.71 4.40
43 44 2.278206 CGACGGAGATGGCGACTG 60.278 66.667 0.00 0.00 0.00 3.51
44 45 4.194720 GCGACGGAGATGGCGACT 62.195 66.667 0.00 0.00 0.00 4.18
56 57 4.409588 CAAACGACAGCCGCGACG 62.410 66.667 8.23 7.86 43.32 5.12
57 58 3.033764 TCAAACGACAGCCGCGAC 61.034 61.111 8.23 0.00 43.32 5.19
58 59 3.033764 GTCAAACGACAGCCGCGA 61.034 61.111 8.23 0.00 43.32 5.87
59 60 3.036084 AGTCAAACGACAGCCGCG 61.036 61.111 0.00 0.00 43.32 6.46
60 61 2.551270 CAGTCAAACGACAGCCGC 59.449 61.111 0.00 0.00 43.32 6.53
61 62 1.284982 CTCCAGTCAAACGACAGCCG 61.285 60.000 0.00 0.00 45.44 5.52
62 63 0.249911 ACTCCAGTCAAACGACAGCC 60.250 55.000 0.00 0.00 35.75 4.85
63 64 1.583054 AACTCCAGTCAAACGACAGC 58.417 50.000 0.00 0.00 35.75 4.40
64 65 3.788797 GCAAAACTCCAGTCAAACGACAG 60.789 47.826 0.00 0.00 35.75 3.51
65 66 2.096819 GCAAAACTCCAGTCAAACGACA 59.903 45.455 0.00 0.00 35.75 4.35
66 67 2.096819 TGCAAAACTCCAGTCAAACGAC 59.903 45.455 0.00 0.00 0.00 4.34
67 68 2.360844 TGCAAAACTCCAGTCAAACGA 58.639 42.857 0.00 0.00 0.00 3.85
68 69 2.842208 TGCAAAACTCCAGTCAAACG 57.158 45.000 0.00 0.00 0.00 3.60
69 70 4.260334 GCAAATGCAAAACTCCAGTCAAAC 60.260 41.667 0.00 0.00 41.59 2.93
70 71 3.870419 GCAAATGCAAAACTCCAGTCAAA 59.130 39.130 0.00 0.00 41.59 2.69
71 72 3.456280 GCAAATGCAAAACTCCAGTCAA 58.544 40.909 0.00 0.00 41.59 3.18
72 73 2.224018 GGCAAATGCAAAACTCCAGTCA 60.224 45.455 7.80 0.00 44.36 3.41
73 74 2.407090 GGCAAATGCAAAACTCCAGTC 58.593 47.619 7.80 0.00 44.36 3.51
74 75 1.070601 GGGCAAATGCAAAACTCCAGT 59.929 47.619 7.80 0.00 44.36 4.00
75 76 1.070445 TGGGCAAATGCAAAACTCCAG 59.930 47.619 7.80 0.00 44.36 3.86
76 77 1.070445 CTGGGCAAATGCAAAACTCCA 59.930 47.619 7.80 3.45 44.36 3.86
77 78 1.070601 ACTGGGCAAATGCAAAACTCC 59.929 47.619 7.80 0.00 44.36 3.85
78 79 2.137523 CACTGGGCAAATGCAAAACTC 58.862 47.619 7.80 0.00 44.36 3.01
79 80 1.202675 CCACTGGGCAAATGCAAAACT 60.203 47.619 7.80 0.00 44.36 2.66
80 81 1.228533 CCACTGGGCAAATGCAAAAC 58.771 50.000 7.80 0.00 44.36 2.43
81 82 0.835941 ACCACTGGGCAAATGCAAAA 59.164 45.000 7.80 0.00 44.36 2.44
82 83 0.835941 AACCACTGGGCAAATGCAAA 59.164 45.000 7.80 0.00 44.36 3.68
83 84 0.106335 CAACCACTGGGCAAATGCAA 59.894 50.000 7.80 0.00 44.36 4.08
84 85 1.047596 ACAACCACTGGGCAAATGCA 61.048 50.000 7.80 0.00 44.36 3.96
85 86 0.319813 GACAACCACTGGGCAAATGC 60.320 55.000 0.00 0.00 37.90 3.56
86 87 1.331214 AGACAACCACTGGGCAAATG 58.669 50.000 0.00 0.00 37.90 2.32
87 88 2.086610 AAGACAACCACTGGGCAAAT 57.913 45.000 0.00 0.00 37.90 2.32
88 89 1.754226 GAAAGACAACCACTGGGCAAA 59.246 47.619 0.00 0.00 37.90 3.68
89 90 1.398692 GAAAGACAACCACTGGGCAA 58.601 50.000 0.00 0.00 37.90 4.52
90 91 0.467290 GGAAAGACAACCACTGGGCA 60.467 55.000 0.00 0.00 37.90 5.36
91 92 1.515521 CGGAAAGACAACCACTGGGC 61.516 60.000 0.00 0.00 37.90 5.36
92 93 0.179029 ACGGAAAGACAACCACTGGG 60.179 55.000 0.00 0.00 41.29 4.45
93 94 1.675552 AACGGAAAGACAACCACTGG 58.324 50.000 0.00 0.00 0.00 4.00
94 95 3.623960 TGTAAACGGAAAGACAACCACTG 59.376 43.478 0.00 0.00 0.00 3.66
95 96 3.876341 TGTAAACGGAAAGACAACCACT 58.124 40.909 0.00 0.00 0.00 4.00
96 97 4.035909 ACATGTAAACGGAAAGACAACCAC 59.964 41.667 0.00 0.00 0.00 4.16
100 101 5.607477 AGAGACATGTAAACGGAAAGACAA 58.393 37.500 0.00 0.00 0.00 3.18
107 108 2.614481 GGGCAAGAGACATGTAAACGGA 60.614 50.000 0.00 0.00 0.00 4.69
136 137 5.822519 ACAATGTATCCATTTACATGCGAGT 59.177 36.000 0.00 0.00 40.94 4.18
137 138 6.304356 ACAATGTATCCATTTACATGCGAG 57.696 37.500 0.00 0.00 40.94 5.03
138 139 7.659390 TGATACAATGTATCCATTTACATGCGA 59.341 33.333 25.36 4.48 40.94 5.10
139 140 7.746034 GTGATACAATGTATCCATTTACATGCG 59.254 37.037 25.36 0.00 40.94 4.73
155 191 4.122776 GGTAGTGCCTCAGTGATACAATG 58.877 47.826 0.00 0.00 0.00 2.82
160 196 2.543037 TGGGTAGTGCCTCAGTGATA 57.457 50.000 0.00 0.00 37.43 2.15
167 203 3.181451 TGATGATTGATGGGTAGTGCCTC 60.181 47.826 0.00 0.00 37.43 4.70
212 248 0.569349 GAAACGGAGCGTGCGTATAC 59.431 55.000 5.17 0.00 45.62 1.47
218 254 1.002792 AGAAAAAGAAACGGAGCGTGC 60.003 47.619 0.00 0.00 39.99 5.34
219 255 3.334272 AAGAAAAAGAAACGGAGCGTG 57.666 42.857 0.00 0.00 39.99 5.34
274 310 2.813908 CTCGTCCGGCCGAAAAGG 60.814 66.667 30.73 16.93 44.97 3.11
300 338 2.648318 GCCAAAAAGTGCTTCGCGC 61.648 57.895 0.00 0.00 39.59 6.86
311 349 1.285641 GCTACAGCGCTGCCAAAAA 59.714 52.632 36.28 14.17 0.00 1.94
352 390 2.253603 GCAGACGATCATGTTTTTGGC 58.746 47.619 0.00 0.00 0.00 4.52
359 397 0.807667 GCTTCCGCAGACGATCATGT 60.808 55.000 0.00 0.00 43.93 3.21
378 416 4.058817 GTGTAAGCTGATATTTCCTCGGG 58.941 47.826 0.00 0.00 0.00 5.14
402 440 4.699522 GTTTGGACGCGCCTCCCT 62.700 66.667 20.73 0.00 37.63 4.20
448 493 7.287696 TCAAATCTTAAAATTCCCTATCCTGGC 59.712 37.037 0.00 0.00 0.00 4.85
517 671 5.189145 TGGTTTACTAGGAGAAATGAGGGAC 59.811 44.000 0.00 0.00 0.00 4.46
520 674 6.038714 GCATTGGTTTACTAGGAGAAATGAGG 59.961 42.308 0.00 0.00 0.00 3.86
572 726 1.766494 TGTGGGATAGGCATTTGCTG 58.234 50.000 2.12 0.00 41.70 4.41
599 753 6.122277 ACAGTATAACATAGGCATTTGCTGT 58.878 36.000 2.12 0.00 41.70 4.40
600 754 6.624352 ACAGTATAACATAGGCATTTGCTG 57.376 37.500 2.12 0.00 41.70 4.41
674 828 5.306678 ACACCAAAATCAAAGAAATAGGCCA 59.693 36.000 5.01 0.00 0.00 5.36
676 830 8.872845 CAATACACCAAAATCAAAGAAATAGGC 58.127 33.333 0.00 0.00 0.00 3.93
717 871 8.391106 CCTTTCTCAATAAACTATGGACTTTCG 58.609 37.037 0.00 0.00 0.00 3.46
721 875 7.042335 CGACCTTTCTCAATAAACTATGGACT 58.958 38.462 0.00 0.00 0.00 3.85
727 881 9.496873 TGATTTTCGACCTTTCTCAATAAACTA 57.503 29.630 0.00 0.00 0.00 2.24
742 896 5.464965 TCTAAAAGCGATGATTTTCGACC 57.535 39.130 0.00 0.00 41.62 4.79
743 897 7.692291 TGATTTCTAAAAGCGATGATTTTCGAC 59.308 33.333 0.00 0.00 41.62 4.20
756 910 5.909610 GCACGTGGATATGATTTCTAAAAGC 59.090 40.000 18.88 0.00 0.00 3.51
761 915 8.773645 CATTTTAGCACGTGGATATGATTTCTA 58.226 33.333 18.88 2.95 0.00 2.10
793 947 7.238486 AGAAACCAAACCATGTGCATATTTA 57.762 32.000 0.00 0.00 0.00 1.40
806 960 5.983118 CCACTGTCAAAATAGAAACCAAACC 59.017 40.000 0.00 0.00 0.00 3.27
812 966 7.648142 TCATTCACCACTGTCAAAATAGAAAC 58.352 34.615 0.00 0.00 0.00 2.78
853 1148 7.224557 CCTCGTCAAAATTCAAAAAGATTTGGT 59.775 33.333 1.86 0.00 44.88 3.67
854 1149 7.566709 CCTCGTCAAAATTCAAAAAGATTTGG 58.433 34.615 1.86 0.00 44.88 3.28
855 1150 7.065283 GCCTCGTCAAAATTCAAAAAGATTTG 58.935 34.615 0.00 0.00 45.92 2.32
856 1151 6.202762 GGCCTCGTCAAAATTCAAAAAGATTT 59.797 34.615 0.00 0.00 0.00 2.17
857 1152 5.696270 GGCCTCGTCAAAATTCAAAAAGATT 59.304 36.000 0.00 0.00 0.00 2.40
858 1153 5.221422 TGGCCTCGTCAAAATTCAAAAAGAT 60.221 36.000 3.32 0.00 0.00 2.40
859 1154 4.098654 TGGCCTCGTCAAAATTCAAAAAGA 59.901 37.500 3.32 0.00 0.00 2.52
860 1155 4.367450 TGGCCTCGTCAAAATTCAAAAAG 58.633 39.130 3.32 0.00 0.00 2.27
861 1156 4.392921 TGGCCTCGTCAAAATTCAAAAA 57.607 36.364 3.32 0.00 0.00 1.94
862 1157 4.392921 TTGGCCTCGTCAAAATTCAAAA 57.607 36.364 3.32 0.00 0.00 2.44
863 1158 4.280677 AGATTGGCCTCGTCAAAATTCAAA 59.719 37.500 3.32 0.00 28.60 2.69
864 1159 3.826157 AGATTGGCCTCGTCAAAATTCAA 59.174 39.130 3.32 0.00 28.60 2.69
865 1160 3.420893 AGATTGGCCTCGTCAAAATTCA 58.579 40.909 3.32 0.00 28.60 2.57
866 1161 4.082787 TCAAGATTGGCCTCGTCAAAATTC 60.083 41.667 3.32 0.00 28.60 2.17
867 1162 3.826157 TCAAGATTGGCCTCGTCAAAATT 59.174 39.130 3.32 0.00 28.60 1.82
868 1163 3.420893 TCAAGATTGGCCTCGTCAAAAT 58.579 40.909 3.32 0.00 28.60 1.82
869 1164 2.813754 CTCAAGATTGGCCTCGTCAAAA 59.186 45.455 3.32 0.00 28.60 2.44
870 1165 2.426522 CTCAAGATTGGCCTCGTCAAA 58.573 47.619 3.32 0.00 28.60 2.69
871 1166 1.339055 CCTCAAGATTGGCCTCGTCAA 60.339 52.381 3.32 0.00 0.00 3.18
872 1167 0.250234 CCTCAAGATTGGCCTCGTCA 59.750 55.000 3.32 0.00 0.00 4.35
873 1168 1.092345 GCCTCAAGATTGGCCTCGTC 61.092 60.000 3.32 0.00 43.11 4.20
874 1169 1.078143 GCCTCAAGATTGGCCTCGT 60.078 57.895 3.32 0.00 43.11 4.18
875 1170 3.819188 GCCTCAAGATTGGCCTCG 58.181 61.111 3.32 0.00 43.11 4.63
990 1290 2.054799 ACACTGACCATGGTTAGGTGT 58.945 47.619 33.08 30.87 40.09 4.16
991 1291 2.859165 ACACTGACCATGGTTAGGTG 57.141 50.000 33.08 30.36 40.09 4.00
1260 1583 4.202641 TGGGAGAGGTAGTTGTTGTAGAGA 60.203 45.833 0.00 0.00 0.00 3.10
1320 1643 3.343788 GAGGACGAGGCAGGTGACG 62.344 68.421 0.00 0.00 0.00 4.35
1323 1646 2.262915 GTGAGGACGAGGCAGGTG 59.737 66.667 0.00 0.00 0.00 4.00
1364 1687 4.148825 CGAGGGAGAGGTTGGCGG 62.149 72.222 0.00 0.00 0.00 6.13
1623 1946 0.733729 CGAGGACGGAGAGGTTGTAG 59.266 60.000 0.00 0.00 35.72 2.74
1758 2081 3.338126 CTTGACGACCCCGGACGAG 62.338 68.421 18.85 4.38 40.78 4.18
1986 2309 0.170561 CCACGGAGAGGTCGTACTTG 59.829 60.000 0.00 0.00 38.94 3.16
2229 2552 0.595567 TCGGTTTCGTCTTGTCGTGG 60.596 55.000 0.00 0.00 37.69 4.94
2230 2553 1.202203 TTCGGTTTCGTCTTGTCGTG 58.798 50.000 0.00 0.00 37.69 4.35
2231 2554 1.589779 GTTTCGGTTTCGTCTTGTCGT 59.410 47.619 0.00 0.00 37.69 4.34
2499 2831 1.873355 GACGAACTCGCAACCACGAC 61.873 60.000 0.00 0.00 44.43 4.34
2502 2834 2.654912 CCGACGAACTCGCAACCAC 61.655 63.158 0.00 0.00 44.43 4.16
2518 2850 0.527113 TGTGAGCATTTCAATGGCCG 59.473 50.000 0.00 0.00 37.61 6.13
2536 2868 2.457366 AGAAGTAACAGCTTCGGGTG 57.543 50.000 0.00 0.00 46.82 4.61
2537 2869 2.289506 GGAAGAAGTAACAGCTTCGGGT 60.290 50.000 0.00 0.00 46.82 5.28
2539 2871 2.996621 CAGGAAGAAGTAACAGCTTCGG 59.003 50.000 0.00 0.00 46.82 4.30
2540 2872 2.996621 CCAGGAAGAAGTAACAGCTTCG 59.003 50.000 0.00 0.00 46.82 3.79
2541 2873 4.009370 ACCAGGAAGAAGTAACAGCTTC 57.991 45.455 0.00 0.00 43.72 3.86
2542 2874 4.137543 CAACCAGGAAGAAGTAACAGCTT 58.862 43.478 0.00 0.00 0.00 3.74
2543 2875 3.496870 CCAACCAGGAAGAAGTAACAGCT 60.497 47.826 0.00 0.00 41.22 4.24
2544 2876 2.814336 CCAACCAGGAAGAAGTAACAGC 59.186 50.000 0.00 0.00 41.22 4.40
2545 2877 4.351874 TCCAACCAGGAAGAAGTAACAG 57.648 45.455 0.00 0.00 45.65 3.16
2593 2925 4.463186 AGCTACTGAAACTACCAGTACCAG 59.537 45.833 0.00 0.00 43.79 4.00
2594 2926 4.219944 CAGCTACTGAAACTACCAGTACCA 59.780 45.833 0.00 0.00 43.79 3.25
2595 2927 4.745649 CAGCTACTGAAACTACCAGTACC 58.254 47.826 0.00 0.00 43.79 3.34
2596 2928 4.174762 GCAGCTACTGAAACTACCAGTAC 58.825 47.826 0.00 0.00 43.79 2.73
2597 2929 3.119602 CGCAGCTACTGAAACTACCAGTA 60.120 47.826 0.00 0.00 43.79 2.74
2598 2930 2.352814 CGCAGCTACTGAAACTACCAGT 60.353 50.000 0.00 0.00 45.75 4.00
2611 2943 4.094090 AGACTTGTAACTACGCAGCTAC 57.906 45.455 0.00 0.00 0.00 3.58
2663 2995 1.785768 TGCAATGCATCAACAACTGC 58.214 45.000 2.72 9.76 38.87 4.40
2704 3036 3.845781 AACTGCGTCAGGATATGGAAT 57.154 42.857 10.80 0.00 35.51 3.01
2718 3050 3.890128 TCGAGAATGCTAGATAACTGCG 58.110 45.455 0.00 0.00 0.00 5.18
2729 3061 5.349817 CACAAGTTACTTCATCGAGAATGCT 59.650 40.000 0.00 0.00 35.25 3.79
2756 3088 6.913873 ACTCGTAGTAAGATCAAGTCTCTC 57.086 41.667 0.00 0.00 35.67 3.20
2770 3102 7.045416 ACCAATGCATCAATTAACTCGTAGTA 58.955 34.615 0.00 0.00 0.00 1.82
2771 3103 5.880332 ACCAATGCATCAATTAACTCGTAGT 59.120 36.000 0.00 0.00 0.00 2.73
2772 3104 6.363577 ACCAATGCATCAATTAACTCGTAG 57.636 37.500 0.00 0.00 0.00 3.51
2778 3110 5.633182 ACAACGAACCAATGCATCAATTAAC 59.367 36.000 0.00 0.00 0.00 2.01
2804 3136 9.862371 AATTAATGTGCAAAAACGGTGATAATA 57.138 25.926 0.00 0.00 0.00 0.98
2806 3138 7.867909 TCAATTAATGTGCAAAAACGGTGATAA 59.132 29.630 0.00 0.00 0.00 1.75
2829 3174 5.178061 CAATGTGCAGTACTACTCCATCAA 58.822 41.667 0.00 0.00 0.00 2.57
2831 3176 3.557595 GCAATGTGCAGTACTACTCCATC 59.442 47.826 0.00 0.00 44.26 3.51
2832 3177 3.535561 GCAATGTGCAGTACTACTCCAT 58.464 45.455 0.00 0.00 44.26 3.41
2847 3193 3.817084 CCTATCAATCGATGGTGCAATGT 59.183 43.478 0.00 0.00 32.73 2.71
2877 3223 6.384258 TCAATCGATGGTTTGTCTCAAAAA 57.616 33.333 0.00 0.00 0.00 1.94
2878 3224 6.573664 ATCAATCGATGGTTTGTCTCAAAA 57.426 33.333 0.00 0.00 0.00 2.44
2879 3225 6.316140 CCTATCAATCGATGGTTTGTCTCAAA 59.684 38.462 0.00 0.00 32.73 2.69
2880 3226 5.817296 CCTATCAATCGATGGTTTGTCTCAA 59.183 40.000 0.00 0.00 32.73 3.02
2881 3227 5.104941 ACCTATCAATCGATGGTTTGTCTCA 60.105 40.000 0.00 0.00 32.43 3.27
2882 3228 5.235186 CACCTATCAATCGATGGTTTGTCTC 59.765 44.000 0.00 0.00 33.43 3.36
2883 3229 5.118990 CACCTATCAATCGATGGTTTGTCT 58.881 41.667 0.00 0.00 33.43 3.41
2884 3230 4.876107 ACACCTATCAATCGATGGTTTGTC 59.124 41.667 0.00 0.00 33.43 3.18
2885 3231 4.843728 ACACCTATCAATCGATGGTTTGT 58.156 39.130 0.00 0.00 33.43 2.83
2886 3232 5.572211 CAACACCTATCAATCGATGGTTTG 58.428 41.667 0.00 5.72 33.43 2.93
2887 3233 4.096382 GCAACACCTATCAATCGATGGTTT 59.904 41.667 0.00 0.00 33.43 3.27
2888 3234 3.627577 GCAACACCTATCAATCGATGGTT 59.372 43.478 0.00 0.00 33.43 3.67
2889 3235 3.206150 GCAACACCTATCAATCGATGGT 58.794 45.455 0.00 0.00 35.00 3.55
2890 3236 2.549754 GGCAACACCTATCAATCGATGG 59.450 50.000 0.00 0.00 34.51 3.51
2891 3237 3.205338 TGGCAACACCTATCAATCGATG 58.795 45.455 0.00 0.00 46.17 3.84
2892 3238 3.558931 TGGCAACACCTATCAATCGAT 57.441 42.857 0.00 0.00 46.17 3.59
2933 3283 2.590007 GCATCCAGTAGGCCAGCG 60.590 66.667 5.01 0.00 33.74 5.18
2955 3305 1.134367 CAGCAGTGCTTTCATGGATGG 59.866 52.381 16.89 0.00 36.40 3.51
2956 3306 2.561733 CAGCAGTGCTTTCATGGATG 57.438 50.000 16.89 0.00 36.40 3.51
2968 3358 2.250485 GTCACGCTTGCAGCAGTG 59.750 61.111 17.71 17.71 42.58 3.66
3082 4195 1.596464 GGTTGATACTAGACGCGTCCG 60.596 57.143 34.08 26.60 41.14 4.79
3089 4202 5.581085 AGCGATTTTGTGGTTGATACTAGAC 59.419 40.000 0.00 0.00 0.00 2.59
3093 4206 3.119849 GCAGCGATTTTGTGGTTGATACT 60.120 43.478 0.00 0.00 0.00 2.12
3094 4207 3.119849 AGCAGCGATTTTGTGGTTGATAC 60.120 43.478 0.00 0.00 0.00 2.24
3095 4208 3.081061 AGCAGCGATTTTGTGGTTGATA 58.919 40.909 0.00 0.00 0.00 2.15
3097 4210 1.266718 GAGCAGCGATTTTGTGGTTGA 59.733 47.619 0.00 0.00 0.00 3.18
3101 4214 2.161831 TCGAGCAGCGATTTTGTGG 58.838 52.632 0.00 0.00 45.59 4.17
3113 4226 3.613563 GAAATTCAAAACACGTCGAGCA 58.386 40.909 0.00 0.00 0.00 4.26
3170 4283 8.992073 GTCCAGCAAAAGATATGTTTTGAAATT 58.008 29.630 31.44 16.05 46.19 1.82
3193 4306 3.426292 GCGAGAGGCAGTAAATTTTGTCC 60.426 47.826 0.00 0.00 42.87 4.02
3255 4368 1.665916 CACATGATAGGCGAGGCGG 60.666 63.158 0.00 0.00 0.00 6.13
3391 4514 2.252072 ATCCAACGGACGACCATGGG 62.252 60.000 18.09 6.50 40.83 4.00
3402 4525 3.213506 TGAAGATATTGGCATCCAACGG 58.786 45.455 0.00 0.00 46.95 4.44
3417 4540 2.532531 CGAAACGCATTGCTGAAGAT 57.467 45.000 7.12 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.