Multiple sequence alignment - TraesCS2A01G398300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G398300 chr2A 100.000 2900 0 0 1 2900 651754509 651751610 0.000000e+00 5356
1 TraesCS2A01G398300 chr2A 87.500 312 29 7 440 741 18596687 18596998 4.600000e-93 351
2 TraesCS2A01G398300 chr2A 87.261 314 31 7 441 745 58192518 58192205 1.650000e-92 350
3 TraesCS2A01G398300 chr2A 86.943 314 32 7 441 745 58187343 58187030 7.690000e-91 344
4 TraesCS2A01G398300 chr2D 91.636 1614 42 39 753 2324 506942744 506941182 0.000000e+00 2146
5 TraesCS2A01G398300 chr2D 96.145 441 13 1 1 441 506943190 506942754 0.000000e+00 717
6 TraesCS2A01G398300 chr2D 85.321 218 26 2 2368 2580 433497481 433497265 1.350000e-53 220
7 TraesCS2A01G398300 chr2B 90.760 1645 66 40 741 2349 594983819 594982225 0.000000e+00 2117
8 TraesCS2A01G398300 chr2B 81.069 449 43 21 1 441 594984235 594983821 1.300000e-83 320
9 TraesCS2A01G398300 chr5D 88.017 484 56 2 2416 2898 7465290 7464808 3.240000e-159 571
10 TraesCS2A01G398300 chr5D 80.639 532 94 5 2365 2889 262097852 262098381 1.250000e-108 403
11 TraesCS2A01G398300 chr3A 85.448 536 72 2 2369 2898 557913949 557913414 1.170000e-153 553
12 TraesCS2A01G398300 chr6B 83.643 538 79 7 2368 2898 557270165 557270700 5.580000e-137 497
13 TraesCS2A01G398300 chr6B 86.943 314 31 7 439 742 547713959 547713646 7.690000e-91 344
14 TraesCS2A01G398300 chr6B 91.279 172 15 0 1577 1748 481089556 481089385 4.830000e-58 235
15 TraesCS2A01G398300 chr6B 80.565 283 48 5 1171 1448 481089915 481089635 8.140000e-51 211
16 TraesCS2A01G398300 chr6B 83.824 136 18 4 1614 1747 532902597 532902464 3.030000e-25 126
17 TraesCS2A01G398300 chr1B 82.309 537 89 2 2368 2898 542836339 542835803 7.320000e-126 460
18 TraesCS2A01G398300 chr6D 82.495 537 74 14 2368 2895 145779564 145780089 1.230000e-123 453
19 TraesCS2A01G398300 chr6D 88.398 181 21 0 1568 1748 339389966 339390146 4.870000e-53 219
20 TraesCS2A01G398300 chr6D 79.787 282 48 5 1176 1451 339389596 339389874 2.280000e-46 196
21 TraesCS2A01G398300 chr6D 83.824 136 18 3 1614 1747 347434348 347434481 3.030000e-25 126
22 TraesCS2A01G398300 chr7D 91.667 324 25 2 2576 2898 508788291 508788613 5.700000e-122 448
23 TraesCS2A01G398300 chr4A 81.262 523 90 5 2374 2889 191027154 191026633 1.610000e-112 416
24 TraesCS2A01G398300 chr4A 86.943 314 28 7 440 741 478200050 478199738 9.950000e-90 340
25 TraesCS2A01G398300 chr1A 81.875 480 83 4 2419 2895 303277172 303276694 4.500000e-108 401
26 TraesCS2A01G398300 chr1A 80.566 530 94 6 2374 2895 303285012 303284484 1.620000e-107 399
27 TraesCS2A01G398300 chr1A 87.658 316 28 8 437 741 382256236 382255921 9.880000e-95 357
28 TraesCS2A01G398300 chr5A 87.580 314 29 4 436 739 353070112 353070425 3.550000e-94 355
29 TraesCS2A01G398300 chr6A 88.158 304 26 7 440 733 19523260 19523563 1.280000e-93 353
30 TraesCS2A01G398300 chr6A 88.660 194 20 2 1555 1748 479834217 479834408 4.830000e-58 235
31 TraesCS2A01G398300 chr6A 89.441 161 17 0 1288 1448 479833997 479834157 1.360000e-48 204
32 TraesCS2A01G398300 chr6A 85.294 136 16 4 1614 1747 496016063 496015930 1.400000e-28 137
33 TraesCS2A01G398300 chr3B 87.662 308 26 9 443 739 24522817 24522511 5.950000e-92 348


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G398300 chr2A 651751610 651754509 2899 True 5356.0 5356 100.0000 1 2900 1 chr2A.!!$R3 2899
1 TraesCS2A01G398300 chr2D 506941182 506943190 2008 True 1431.5 2146 93.8905 1 2324 2 chr2D.!!$R2 2323
2 TraesCS2A01G398300 chr2B 594982225 594984235 2010 True 1218.5 2117 85.9145 1 2349 2 chr2B.!!$R1 2348
3 TraesCS2A01G398300 chr5D 262097852 262098381 529 False 403.0 403 80.6390 2365 2889 1 chr5D.!!$F1 524
4 TraesCS2A01G398300 chr3A 557913414 557913949 535 True 553.0 553 85.4480 2369 2898 1 chr3A.!!$R1 529
5 TraesCS2A01G398300 chr6B 557270165 557270700 535 False 497.0 497 83.6430 2368 2898 1 chr6B.!!$F1 530
6 TraesCS2A01G398300 chr6B 481089385 481089915 530 True 223.0 235 85.9220 1171 1748 2 chr6B.!!$R3 577
7 TraesCS2A01G398300 chr1B 542835803 542836339 536 True 460.0 460 82.3090 2368 2898 1 chr1B.!!$R1 530
8 TraesCS2A01G398300 chr6D 145779564 145780089 525 False 453.0 453 82.4950 2368 2895 1 chr6D.!!$F1 527
9 TraesCS2A01G398300 chr6D 339389596 339390146 550 False 207.5 219 84.0925 1176 1748 2 chr6D.!!$F3 572
10 TraesCS2A01G398300 chr4A 191026633 191027154 521 True 416.0 416 81.2620 2374 2889 1 chr4A.!!$R1 515
11 TraesCS2A01G398300 chr1A 303284484 303285012 528 True 399.0 399 80.5660 2374 2895 1 chr1A.!!$R2 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 851 0.248907 CCCGTACATGTAGCCAGTCG 60.249 60.0 5.62 5.1 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 2170 0.237498 GTAAACAGGGCAGCACGAAC 59.763 55.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 1.805945 CCTTGTACGGTGAGAGCGC 60.806 63.158 0.00 0.00 43.79 5.92
154 155 3.406595 ATGCTAGGTTCAGGCGGGC 62.407 63.158 0.00 0.00 0.00 6.13
324 341 3.998672 GTCGTCGGTGCTTCCCCA 61.999 66.667 0.00 0.00 0.00 4.96
441 463 0.465460 TCGGTCTTGCCAGCAGTTTT 60.465 50.000 0.00 0.00 36.97 2.43
443 465 1.197721 CGGTCTTGCCAGCAGTTTTAG 59.802 52.381 0.00 0.00 36.97 1.85
444 466 1.541588 GGTCTTGCCAGCAGTTTTAGG 59.458 52.381 0.00 0.00 37.17 2.69
450 472 0.329596 CCAGCAGTTTTAGGCCTCCT 59.670 55.000 9.68 0.00 37.71 3.69
451 473 1.272147 CCAGCAGTTTTAGGCCTCCTT 60.272 52.381 9.68 0.00 34.61 3.36
453 475 2.229784 CAGCAGTTTTAGGCCTCCTTTG 59.770 50.000 9.68 4.00 34.61 2.77
454 476 1.067565 GCAGTTTTAGGCCTCCTTTGC 60.068 52.381 9.68 11.08 34.61 3.68
456 478 3.686016 CAGTTTTAGGCCTCCTTTGCTA 58.314 45.455 9.68 0.00 34.61 3.49
458 480 3.017442 GTTTTAGGCCTCCTTTGCTAGG 58.983 50.000 9.68 0.00 46.27 3.02
521 543 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
522 544 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
523 545 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
524 546 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
525 547 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
526 548 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
527 549 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
528 550 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
529 551 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
530 552 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
531 553 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
532 554 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
533 555 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
534 556 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
535 557 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
536 558 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
537 559 5.662657 CCCTTTGGTTCATAGGAATGGATTT 59.337 40.000 6.07 0.00 35.14 2.17
538 560 6.183360 CCCTTTGGTTCATAGGAATGGATTTC 60.183 42.308 6.07 0.00 35.14 2.17
539 561 6.608808 CCTTTGGTTCATAGGAATGGATTTCT 59.391 38.462 0.00 0.00 35.14 2.52
540 562 7.779798 CCTTTGGTTCATAGGAATGGATTTCTA 59.220 37.037 0.00 0.00 35.14 2.10
541 563 9.359653 CTTTGGTTCATAGGAATGGATTTCTAT 57.640 33.333 0.00 0.00 38.76 1.98
542 564 9.713684 TTTGGTTCATAGGAATGGATTTCTATT 57.286 29.630 0.00 0.00 36.64 1.73
543 565 8.924511 TGGTTCATAGGAATGGATTTCTATTC 57.075 34.615 7.83 7.83 36.64 1.75
568 590 9.716556 TCCTATATAGATTGGTTCCTATCCTTC 57.283 37.037 11.53 0.00 30.64 3.46
569 591 9.494055 CCTATATAGATTGGTTCCTATCCTTCA 57.506 37.037 11.53 0.00 0.00 3.02
571 593 8.742125 ATATAGATTGGTTCCTATCCTTCACA 57.258 34.615 9.04 0.00 0.00 3.58
572 594 5.983333 AGATTGGTTCCTATCCTTCACAT 57.017 39.130 9.04 0.00 0.00 3.21
573 595 6.332976 AGATTGGTTCCTATCCTTCACATT 57.667 37.500 9.04 0.00 0.00 2.71
574 596 6.735556 AGATTGGTTCCTATCCTTCACATTT 58.264 36.000 9.04 0.00 0.00 2.32
575 597 6.830838 AGATTGGTTCCTATCCTTCACATTTC 59.169 38.462 9.04 0.00 0.00 2.17
576 598 5.512942 TGGTTCCTATCCTTCACATTTCA 57.487 39.130 0.00 0.00 0.00 2.69
577 599 6.078456 TGGTTCCTATCCTTCACATTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
578 600 7.206789 TGGTTCCTATCCTTCACATTTCATA 57.793 36.000 0.00 0.00 0.00 2.15
579 601 7.282585 TGGTTCCTATCCTTCACATTTCATAG 58.717 38.462 0.00 0.00 0.00 2.23
580 602 6.712547 GGTTCCTATCCTTCACATTTCATAGG 59.287 42.308 0.00 0.00 35.93 2.57
581 603 7.420214 GGTTCCTATCCTTCACATTTCATAGGA 60.420 40.741 2.01 2.01 39.98 2.94
582 604 7.690454 TCCTATCCTTCACATTTCATAGGAA 57.310 36.000 3.47 0.00 39.17 3.36
583 605 8.101309 TCCTATCCTTCACATTTCATAGGAAA 57.899 34.615 4.85 4.85 46.36 3.13
584 606 8.556589 TCCTATCCTTCACATTTCATAGGAAAA 58.443 33.333 6.65 0.00 45.52 2.29
585 607 9.359653 CCTATCCTTCACATTTCATAGGAAAAT 57.640 33.333 6.65 0.00 45.52 1.82
639 661 8.984891 TTTTATGTCAGCCAAATAACATCTTG 57.015 30.769 0.00 0.00 34.39 3.02
640 662 7.701539 TTATGTCAGCCAAATAACATCTTGT 57.298 32.000 0.00 0.00 34.39 3.16
641 663 6.594788 ATGTCAGCCAAATAACATCTTGTT 57.405 33.333 0.00 0.00 43.88 2.83
642 664 6.403866 TGTCAGCCAAATAACATCTTGTTT 57.596 33.333 0.00 0.00 41.45 2.83
643 665 6.446318 TGTCAGCCAAATAACATCTTGTTTC 58.554 36.000 0.00 0.00 41.45 2.78
644 666 6.265196 TGTCAGCCAAATAACATCTTGTTTCT 59.735 34.615 0.00 0.00 41.45 2.52
645 667 7.147976 GTCAGCCAAATAACATCTTGTTTCTT 58.852 34.615 0.00 0.00 41.45 2.52
646 668 8.296713 GTCAGCCAAATAACATCTTGTTTCTTA 58.703 33.333 0.00 0.00 41.45 2.10
647 669 9.023962 TCAGCCAAATAACATCTTGTTTCTTAT 57.976 29.630 0.00 0.00 41.45 1.73
648 670 9.643693 CAGCCAAATAACATCTTGTTTCTTATT 57.356 29.630 0.00 0.00 41.45 1.40
649 671 9.860898 AGCCAAATAACATCTTGTTTCTTATTC 57.139 29.630 0.00 0.00 41.45 1.75
650 672 9.087424 GCCAAATAACATCTTGTTTCTTATTCC 57.913 33.333 0.00 0.00 41.45 3.01
750 772 2.651382 AAAAGCCTTACAGTTCCGGT 57.349 45.000 0.00 0.00 0.00 5.28
751 773 2.651382 AAAGCCTTACAGTTCCGGTT 57.349 45.000 0.00 0.00 0.00 4.44
752 774 3.775261 AAAGCCTTACAGTTCCGGTTA 57.225 42.857 0.00 0.00 0.00 2.85
753 775 3.329929 AAGCCTTACAGTTCCGGTTAG 57.670 47.619 0.00 0.00 0.00 2.34
754 776 2.254508 AGCCTTACAGTTCCGGTTAGT 58.745 47.619 0.00 0.00 0.00 2.24
755 777 3.434309 AGCCTTACAGTTCCGGTTAGTA 58.566 45.455 0.00 0.00 0.00 1.82
756 778 4.028825 AGCCTTACAGTTCCGGTTAGTAT 58.971 43.478 0.00 0.00 0.00 2.12
757 779 4.468868 AGCCTTACAGTTCCGGTTAGTATT 59.531 41.667 0.00 0.00 0.00 1.89
758 780 4.569564 GCCTTACAGTTCCGGTTAGTATTG 59.430 45.833 0.00 0.00 0.00 1.90
759 781 4.569564 CCTTACAGTTCCGGTTAGTATTGC 59.430 45.833 0.00 0.00 0.00 3.56
760 782 3.688694 ACAGTTCCGGTTAGTATTGCA 57.311 42.857 0.00 0.00 0.00 4.08
761 783 4.216411 ACAGTTCCGGTTAGTATTGCAT 57.784 40.909 0.00 0.00 0.00 3.96
762 784 4.189231 ACAGTTCCGGTTAGTATTGCATC 58.811 43.478 0.00 0.00 0.00 3.91
827 849 0.822164 GTCCCGTACATGTAGCCAGT 59.178 55.000 5.62 0.00 0.00 4.00
828 850 1.108776 TCCCGTACATGTAGCCAGTC 58.891 55.000 5.62 0.00 0.00 3.51
829 851 0.248907 CCCGTACATGTAGCCAGTCG 60.249 60.000 5.62 5.10 0.00 4.18
830 852 0.870307 CCGTACATGTAGCCAGTCGC 60.870 60.000 5.62 0.00 37.98 5.19
935 977 1.115467 ACCACTCTTGCCTCTATCCG 58.885 55.000 0.00 0.00 0.00 4.18
940 982 1.144716 CTTGCCTCTATCCGCAGCA 59.855 57.895 0.00 0.00 36.14 4.41
941 983 1.153369 TTGCCTCTATCCGCAGCAC 60.153 57.895 0.00 0.00 36.14 4.40
948 992 1.135046 CTATCCGCAGCACTCATTCG 58.865 55.000 0.00 0.00 0.00 3.34
958 1002 3.725740 CAGCACTCATTCGAACACAAAAC 59.274 43.478 0.00 0.00 0.00 2.43
959 1003 3.376859 AGCACTCATTCGAACACAAAACA 59.623 39.130 0.00 0.00 0.00 2.83
967 1031 3.075148 TCGAACACAAAACAACACCAGA 58.925 40.909 0.00 0.00 0.00 3.86
1088 1164 1.152183 ACGGTAGGGAAGGGTGTGT 60.152 57.895 0.00 0.00 0.00 3.72
1090 1166 1.896122 CGGTAGGGAAGGGTGTGTCC 61.896 65.000 0.00 0.00 0.00 4.02
1162 1238 1.195900 GACGTGCGTTGCTTGGATTAA 59.804 47.619 0.00 0.00 0.00 1.40
1163 1239 1.810151 ACGTGCGTTGCTTGGATTAAT 59.190 42.857 0.00 0.00 0.00 1.40
1164 1240 3.004171 ACGTGCGTTGCTTGGATTAATA 58.996 40.909 0.00 0.00 0.00 0.98
1477 1559 5.624967 GCCCTCTCCTTGTACTAGTTTCTTC 60.625 48.000 0.00 0.00 0.00 2.87
1478 1560 5.105269 CCCTCTCCTTGTACTAGTTTCTTCC 60.105 48.000 0.00 0.00 0.00 3.46
1479 1561 5.480772 CCTCTCCTTGTACTAGTTTCTTCCA 59.519 44.000 0.00 0.00 0.00 3.53
1482 1564 6.553852 TCTCCTTGTACTAGTTTCTTCCACTT 59.446 38.462 0.00 0.00 0.00 3.16
1483 1565 6.756221 TCCTTGTACTAGTTTCTTCCACTTC 58.244 40.000 0.00 0.00 0.00 3.01
1485 1567 5.779529 TGTACTAGTTTCTTCCACTTCGT 57.220 39.130 0.00 0.00 0.00 3.85
1497 1585 3.116531 CTTCGTCCCCGGCGTTTC 61.117 66.667 6.01 0.00 33.95 2.78
1505 1593 3.493440 CCGGCGTTTCGGGCTTAC 61.493 66.667 6.01 0.00 45.78 2.34
1506 1594 2.433664 CGGCGTTTCGGGCTTACT 60.434 61.111 0.00 0.00 0.00 2.24
1507 1595 2.736682 CGGCGTTTCGGGCTTACTG 61.737 63.158 0.00 0.00 0.00 2.74
1508 1596 1.670083 GGCGTTTCGGGCTTACTGT 60.670 57.895 0.00 0.00 0.00 3.55
1509 1597 1.632948 GGCGTTTCGGGCTTACTGTC 61.633 60.000 0.00 0.00 0.00 3.51
1510 1598 0.669625 GCGTTTCGGGCTTACTGTCT 60.670 55.000 0.00 0.00 0.00 3.41
1511 1599 1.403249 GCGTTTCGGGCTTACTGTCTA 60.403 52.381 0.00 0.00 0.00 2.59
1566 1657 3.093574 CGATGTTGATCGTTTGATGTGC 58.906 45.455 0.00 0.00 45.43 4.57
1944 2035 6.486657 TCAGTTAGCTACAGATGTTTTGCTTT 59.513 34.615 11.17 0.29 32.95 3.51
1955 2046 6.035866 CAGATGTTTTGCTTTGCTTGTTTGTA 59.964 34.615 0.00 0.00 0.00 2.41
1999 2090 3.572682 CCGAGGATTATGCTGTACTGGTA 59.427 47.826 0.00 0.00 0.00 3.25
2007 2098 6.801718 TTATGCTGTACTGGTACTGGTAAT 57.198 37.500 15.77 8.58 37.00 1.89
2162 2253 4.564769 GGCGAGTTGTTTTTCATTTGTTGA 59.435 37.500 0.00 0.00 0.00 3.18
2297 2390 4.742201 CCCGTCCGTGGTGCAGAG 62.742 72.222 0.00 0.00 0.00 3.35
2349 2449 5.073478 GCGACAAATACTCGAAAGAAACTG 58.927 41.667 0.00 0.00 41.32 3.16
2350 2450 5.609088 CGACAAATACTCGAAAGAAACTGG 58.391 41.667 0.00 0.00 41.32 4.00
2351 2451 5.404366 CGACAAATACTCGAAAGAAACTGGA 59.596 40.000 0.00 0.00 41.32 3.86
2352 2452 6.400091 CGACAAATACTCGAAAGAAACTGGAG 60.400 42.308 0.00 0.00 41.32 3.86
2353 2453 5.179555 ACAAATACTCGAAAGAAACTGGAGC 59.820 40.000 0.00 0.00 41.32 4.70
2354 2454 2.910688 ACTCGAAAGAAACTGGAGCA 57.089 45.000 0.00 0.00 41.32 4.26
2355 2455 3.409026 ACTCGAAAGAAACTGGAGCAT 57.591 42.857 0.00 0.00 41.32 3.79
2356 2456 3.330267 ACTCGAAAGAAACTGGAGCATC 58.670 45.455 0.00 0.00 41.32 3.91
2393 2494 9.357161 TCAAAAATGGTTAAGTTTCCTAGCTAA 57.643 29.630 0.00 0.00 0.00 3.09
2397 2498 9.755122 AAATGGTTAAGTTTCCTAGCTAAAGAT 57.245 29.630 0.00 0.00 0.00 2.40
2407 2508 9.384764 GTTTCCTAGCTAAAGATATCTGTTGTT 57.615 33.333 5.86 2.41 0.00 2.83
2474 2580 8.614469 AGATTTATCCTTTAGCTTAGCATGTC 57.386 34.615 7.07 0.00 0.00 3.06
2475 2581 8.213679 AGATTTATCCTTTAGCTTAGCATGTCA 58.786 33.333 7.07 0.00 0.00 3.58
2483 2589 6.583912 TTAGCTTAGCATGTCAATCGTTAC 57.416 37.500 7.07 0.00 0.00 2.50
2490 2596 5.614760 AGCATGTCAATCGTTACGTTTTAC 58.385 37.500 4.24 5.37 0.00 2.01
2499 2614 6.956299 ATCGTTACGTTTTACTGCTATTGT 57.044 33.333 4.24 0.00 0.00 2.71
2501 2616 6.583160 TCGTTACGTTTTACTGCTATTGTTG 58.417 36.000 4.24 0.00 0.00 3.33
2511 2626 5.618056 ACTGCTATTGTTGTCTTCATGTG 57.382 39.130 0.00 0.00 0.00 3.21
2548 2663 8.049117 TCCTTCAACTATGAGATTATGCAACTT 58.951 33.333 0.00 0.00 36.78 2.66
2556 2671 9.376075 CTATGAGATTATGCAACTTTCGGATAT 57.624 33.333 0.00 0.00 0.00 1.63
2558 2673 8.450578 TGAGATTATGCAACTTTCGGATATTT 57.549 30.769 0.00 0.00 0.00 1.40
2597 2712 7.330946 GTGTGCTATTGATGTCTACTACACAAA 59.669 37.037 0.00 0.00 42.09 2.83
2621 2736 8.827177 AATTTATTCTTGTAGACTCGTGTTGA 57.173 30.769 0.00 0.00 0.00 3.18
2637 2752 0.321919 TTGAGCCTTCAAGCGCAGAT 60.322 50.000 11.47 0.00 43.57 2.90
2647 2762 2.487762 TCAAGCGCAGATTTTTGTAGGG 59.512 45.455 11.47 0.00 27.80 3.53
2650 2765 1.134946 GCGCAGATTTTTGTAGGGCAT 59.865 47.619 0.30 0.00 37.96 4.40
2653 2768 4.676723 GCGCAGATTTTTGTAGGGCATTAA 60.677 41.667 0.30 0.00 37.96 1.40
2668 2783 6.836242 AGGGCATTAACAATTTTTCCTCAAA 58.164 32.000 0.00 0.00 0.00 2.69
2671 2786 7.022979 GGCATTAACAATTTTTCCTCAAATGC 58.977 34.615 10.99 10.99 43.56 3.56
2698 2813 4.472108 ACCTAAGGTTTATCAATCCGTGGA 59.528 41.667 0.00 0.00 27.29 4.02
2700 2815 5.883673 CCTAAGGTTTATCAATCCGTGGAAA 59.116 40.000 0.00 0.00 0.00 3.13
2717 2833 4.016444 TGGAAAGTGTAGGATGAAATGGC 58.984 43.478 0.00 0.00 0.00 4.40
2734 2850 0.955919 GGCCTCTCTCAAACAACCCG 60.956 60.000 0.00 0.00 0.00 5.28
2735 2851 1.578206 GCCTCTCTCAAACAACCCGC 61.578 60.000 0.00 0.00 0.00 6.13
2754 2871 4.562552 CCCGCCAACCAAATACAAGAAATT 60.563 41.667 0.00 0.00 0.00 1.82
2759 2876 7.596995 CGCCAACCAAATACAAGAAATTTCTTA 59.403 33.333 28.40 17.27 45.23 2.10
2773 2890 6.725834 AGAAATTTCTTATGTCCCCAACACAT 59.274 34.615 15.11 0.00 35.70 3.21
2776 2893 2.093181 TCTTATGTCCCCAACACATCCG 60.093 50.000 0.00 0.00 41.75 4.18
2811 2928 5.847111 ATTGTATAGGTGCACTAGTTCGA 57.153 39.130 17.98 5.64 34.56 3.71
2822 2939 3.181509 GCACTAGTTCGACGAAGAGATGA 60.182 47.826 20.70 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
297 314 4.483683 CCGACGACGCGTTGCATG 62.484 66.667 26.19 15.27 41.37 4.06
324 341 2.373707 GGACATGGCAGGAGAGGCT 61.374 63.158 5.99 0.00 34.73 4.58
330 347 1.541118 TTCCCTGGACATGGCAGGA 60.541 57.895 16.16 9.04 38.33 3.86
499 521 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
500 522 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
501 523 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
502 524 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
503 525 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
504 526 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
505 527 4.884164 CCTATGAACCAAAGGGCTCTAAAG 59.116 45.833 0.00 0.00 37.90 1.85
506 528 4.538490 TCCTATGAACCAAAGGGCTCTAAA 59.462 41.667 0.00 0.00 37.90 1.85
507 529 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
508 530 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
509 531 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
510 532 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
511 533 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
512 534 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
513 535 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
514 536 6.608808 AGAAATCCATTCCTATGAACCAAAGG 59.391 38.462 0.00 0.00 38.94 3.11
515 537 7.651027 AGAAATCCATTCCTATGAACCAAAG 57.349 36.000 0.00 0.00 38.94 2.77
516 538 9.713684 AATAGAAATCCATTCCTATGAACCAAA 57.286 29.630 0.00 0.00 38.94 3.28
517 539 9.354673 GAATAGAAATCCATTCCTATGAACCAA 57.645 33.333 0.00 0.00 38.94 3.67
518 540 7.944554 GGAATAGAAATCCATTCCTATGAACCA 59.055 37.037 11.80 0.00 44.56 3.67
519 541 8.341892 GGAATAGAAATCCATTCCTATGAACC 57.658 38.462 11.80 0.00 44.56 3.62
542 564 9.716556 GAAGGATAGGAACCAATCTATATAGGA 57.283 37.037 9.89 0.00 0.00 2.94
543 565 9.494055 TGAAGGATAGGAACCAATCTATATAGG 57.506 37.037 9.89 0.00 0.00 2.57
545 567 9.837681 TGTGAAGGATAGGAACCAATCTATATA 57.162 33.333 0.00 0.00 0.00 0.86
546 568 8.742125 TGTGAAGGATAGGAACCAATCTATAT 57.258 34.615 0.00 0.00 0.00 0.86
547 569 8.742125 ATGTGAAGGATAGGAACCAATCTATA 57.258 34.615 0.00 0.00 0.00 1.31
548 570 7.639062 ATGTGAAGGATAGGAACCAATCTAT 57.361 36.000 0.00 0.00 0.00 1.98
549 571 7.451731 AATGTGAAGGATAGGAACCAATCTA 57.548 36.000 0.00 0.00 0.00 1.98
550 572 5.983333 ATGTGAAGGATAGGAACCAATCT 57.017 39.130 0.00 0.00 0.00 2.40
551 573 6.603201 TGAAATGTGAAGGATAGGAACCAATC 59.397 38.462 0.00 0.00 0.00 2.67
552 574 6.493166 TGAAATGTGAAGGATAGGAACCAAT 58.507 36.000 0.00 0.00 0.00 3.16
553 575 5.886609 TGAAATGTGAAGGATAGGAACCAA 58.113 37.500 0.00 0.00 0.00 3.67
554 576 5.512942 TGAAATGTGAAGGATAGGAACCA 57.487 39.130 0.00 0.00 0.00 3.67
555 577 6.712547 CCTATGAAATGTGAAGGATAGGAACC 59.287 42.308 0.00 0.00 36.16 3.62
556 578 7.509546 TCCTATGAAATGTGAAGGATAGGAAC 58.490 38.462 0.00 0.00 38.86 3.62
557 579 7.690454 TCCTATGAAATGTGAAGGATAGGAA 57.310 36.000 0.00 0.00 38.86 3.36
558 580 7.690454 TTCCTATGAAATGTGAAGGATAGGA 57.310 36.000 0.00 0.00 39.66 2.94
559 581 8.752005 TTTTCCTATGAAATGTGAAGGATAGG 57.248 34.615 0.00 0.00 40.08 2.57
613 635 9.421806 CAAGATGTTATTTGGCTGACATAAAAA 57.578 29.630 0.00 0.00 33.21 1.94
614 636 8.584157 ACAAGATGTTATTTGGCTGACATAAAA 58.416 29.630 0.00 0.00 33.21 1.52
615 637 8.121305 ACAAGATGTTATTTGGCTGACATAAA 57.879 30.769 0.00 0.00 33.21 1.40
616 638 7.701539 ACAAGATGTTATTTGGCTGACATAA 57.298 32.000 0.00 0.00 33.21 1.90
617 639 7.701539 AACAAGATGTTATTTGGCTGACATA 57.298 32.000 0.00 0.00 39.09 2.29
618 640 6.594788 AACAAGATGTTATTTGGCTGACAT 57.405 33.333 0.00 0.00 39.09 3.06
619 641 6.265196 AGAAACAAGATGTTATTTGGCTGACA 59.735 34.615 0.00 0.00 40.14 3.58
620 642 6.681777 AGAAACAAGATGTTATTTGGCTGAC 58.318 36.000 0.00 0.00 40.14 3.51
621 643 6.899393 AGAAACAAGATGTTATTTGGCTGA 57.101 33.333 0.00 0.00 40.14 4.26
622 644 9.643693 AATAAGAAACAAGATGTTATTTGGCTG 57.356 29.630 0.00 0.00 40.14 4.85
623 645 9.860898 GAATAAGAAACAAGATGTTATTTGGCT 57.139 29.630 0.00 0.00 40.14 4.75
624 646 9.087424 GGAATAAGAAACAAGATGTTATTTGGC 57.913 33.333 0.00 0.00 40.14 4.52
730 752 2.940158 ACCGGAACTGTAAGGCTTTTT 58.060 42.857 9.46 0.00 39.30 1.94
731 753 2.651382 ACCGGAACTGTAAGGCTTTT 57.349 45.000 9.46 0.00 39.30 2.27
732 754 2.651382 AACCGGAACTGTAAGGCTTT 57.349 45.000 9.46 0.00 39.30 3.51
733 755 2.636403 ACTAACCGGAACTGTAAGGCTT 59.364 45.455 9.46 4.58 39.30 4.35
734 756 2.254508 ACTAACCGGAACTGTAAGGCT 58.745 47.619 9.46 0.00 39.30 4.58
735 757 2.756840 ACTAACCGGAACTGTAAGGC 57.243 50.000 9.46 0.00 39.30 4.35
736 758 4.569564 GCAATACTAACCGGAACTGTAAGG 59.430 45.833 9.46 3.97 39.30 2.69
737 759 5.172934 TGCAATACTAACCGGAACTGTAAG 58.827 41.667 9.46 4.63 42.29 2.34
738 760 5.149973 TGCAATACTAACCGGAACTGTAA 57.850 39.130 9.46 0.00 0.00 2.41
739 761 4.804868 TGCAATACTAACCGGAACTGTA 57.195 40.909 9.46 6.13 0.00 2.74
740 762 3.688694 TGCAATACTAACCGGAACTGT 57.311 42.857 9.46 3.77 0.00 3.55
741 763 3.560068 GGATGCAATACTAACCGGAACTG 59.440 47.826 9.46 0.00 0.00 3.16
742 764 3.433173 GGGATGCAATACTAACCGGAACT 60.433 47.826 9.46 0.00 0.00 3.01
743 765 2.876550 GGGATGCAATACTAACCGGAAC 59.123 50.000 9.46 0.00 0.00 3.62
744 766 2.158726 GGGGATGCAATACTAACCGGAA 60.159 50.000 9.46 0.00 0.00 4.30
745 767 1.418637 GGGGATGCAATACTAACCGGA 59.581 52.381 9.46 0.00 0.00 5.14
746 768 1.876416 CGGGGATGCAATACTAACCGG 60.876 57.143 0.00 0.00 36.67 5.28
747 769 1.202604 ACGGGGATGCAATACTAACCG 60.203 52.381 0.00 0.75 45.06 4.44
748 770 2.158871 TGACGGGGATGCAATACTAACC 60.159 50.000 0.00 0.00 0.00 2.85
749 771 3.188159 TGACGGGGATGCAATACTAAC 57.812 47.619 0.00 0.00 0.00 2.34
750 772 3.916359 TTGACGGGGATGCAATACTAA 57.084 42.857 0.00 0.00 0.00 2.24
751 773 3.199071 ACTTTGACGGGGATGCAATACTA 59.801 43.478 0.00 0.00 0.00 1.82
752 774 2.026262 ACTTTGACGGGGATGCAATACT 60.026 45.455 0.00 0.00 0.00 2.12
753 775 2.365582 ACTTTGACGGGGATGCAATAC 58.634 47.619 0.00 0.00 0.00 1.89
754 776 2.799126 ACTTTGACGGGGATGCAATA 57.201 45.000 0.00 0.00 0.00 1.90
755 777 1.818674 GAACTTTGACGGGGATGCAAT 59.181 47.619 0.00 0.00 0.00 3.56
756 778 1.243902 GAACTTTGACGGGGATGCAA 58.756 50.000 0.00 0.00 0.00 4.08
757 779 0.608035 GGAACTTTGACGGGGATGCA 60.608 55.000 0.00 0.00 0.00 3.96
758 780 1.644786 CGGAACTTTGACGGGGATGC 61.645 60.000 0.00 0.00 0.00 3.91
759 781 1.024579 CCGGAACTTTGACGGGGATG 61.025 60.000 0.00 0.00 43.69 3.51
760 782 1.298667 CCGGAACTTTGACGGGGAT 59.701 57.895 0.00 0.00 43.69 3.85
761 783 2.745037 CCGGAACTTTGACGGGGA 59.255 61.111 0.00 0.00 43.69 4.81
829 851 0.734253 CTGTCGGTGTCAGTAGCAGC 60.734 60.000 0.00 0.00 0.00 5.25
830 852 0.734253 GCTGTCGGTGTCAGTAGCAG 60.734 60.000 0.00 0.00 35.60 4.24
831 853 1.289066 GCTGTCGGTGTCAGTAGCA 59.711 57.895 0.00 0.00 35.60 3.49
832 854 1.446272 GGCTGTCGGTGTCAGTAGC 60.446 63.158 0.00 0.00 35.60 3.58
833 855 1.154016 CGGCTGTCGGTGTCAGTAG 60.154 63.158 0.00 0.00 35.60 2.57
834 856 1.601477 TCGGCTGTCGGTGTCAGTA 60.601 57.895 0.30 0.00 39.77 2.74
835 857 2.910479 TCGGCTGTCGGTGTCAGT 60.910 61.111 0.30 0.00 39.77 3.41
935 977 0.867746 TGTGTTCGAATGAGTGCTGC 59.132 50.000 0.00 0.00 0.00 5.25
940 982 5.092781 GTGTTGTTTTGTGTTCGAATGAGT 58.907 37.500 0.00 0.00 0.00 3.41
941 983 4.499040 GGTGTTGTTTTGTGTTCGAATGAG 59.501 41.667 0.00 0.00 0.00 2.90
948 992 4.165779 CTGTCTGGTGTTGTTTTGTGTTC 58.834 43.478 0.00 0.00 0.00 3.18
958 1002 2.253758 CCGTGGCTGTCTGGTGTTG 61.254 63.158 0.00 0.00 0.00 3.33
959 1003 2.111043 CCGTGGCTGTCTGGTGTT 59.889 61.111 0.00 0.00 0.00 3.32
967 1031 0.035458 CTTTCTTCCTCCGTGGCTGT 59.965 55.000 0.00 0.00 35.26 4.40
1066 1142 0.464452 CACCCTTCCCTACCGTCATC 59.536 60.000 0.00 0.00 0.00 2.92
1088 1164 0.611714 GCAGACGGGGAAAAGTAGGA 59.388 55.000 0.00 0.00 0.00 2.94
1090 1166 0.613777 AGGCAGACGGGGAAAAGTAG 59.386 55.000 0.00 0.00 0.00 2.57
1162 1238 3.849951 CACCGTCCCTGCGCCTAT 61.850 66.667 4.18 0.00 0.00 2.57
1463 1545 5.779529 ACGAAGTGGAAGAAACTAGTACA 57.220 39.130 0.00 0.00 42.51 2.90
1497 1585 2.993899 CAAACAGTAGACAGTAAGCCCG 59.006 50.000 0.00 0.00 0.00 6.13
1499 1587 6.199393 CAAAACAAACAGTAGACAGTAAGCC 58.801 40.000 0.00 0.00 0.00 4.35
1502 1590 8.402472 CAATCCAAAACAAACAGTAGACAGTAA 58.598 33.333 0.00 0.00 0.00 2.24
1503 1591 7.771361 TCAATCCAAAACAAACAGTAGACAGTA 59.229 33.333 0.00 0.00 0.00 2.74
1504 1592 6.601613 TCAATCCAAAACAAACAGTAGACAGT 59.398 34.615 0.00 0.00 0.00 3.55
1505 1593 7.026631 TCAATCCAAAACAAACAGTAGACAG 57.973 36.000 0.00 0.00 0.00 3.51
1506 1594 7.581213 ATCAATCCAAAACAAACAGTAGACA 57.419 32.000 0.00 0.00 0.00 3.41
1507 1595 7.382218 CCAATCAATCCAAAACAAACAGTAGAC 59.618 37.037 0.00 0.00 0.00 2.59
1508 1596 7.069331 ACCAATCAATCCAAAACAAACAGTAGA 59.931 33.333 0.00 0.00 0.00 2.59
1509 1597 7.209475 ACCAATCAATCCAAAACAAACAGTAG 58.791 34.615 0.00 0.00 0.00 2.57
1510 1598 7.118496 ACCAATCAATCCAAAACAAACAGTA 57.882 32.000 0.00 0.00 0.00 2.74
1511 1599 5.988287 ACCAATCAATCCAAAACAAACAGT 58.012 33.333 0.00 0.00 0.00 3.55
1723 1814 2.113986 AGGCTTTCTTGCACGGCT 59.886 55.556 0.00 0.00 34.04 5.52
1944 2035 5.347635 CGCTACAGATTAGTACAAACAAGCA 59.652 40.000 0.00 0.00 0.00 3.91
1955 2046 4.039366 GGAGATTTCCCGCTACAGATTAGT 59.961 45.833 0.00 0.00 37.53 2.24
2014 2105 2.251371 GCGTGGTCAAGGCGAAAC 59.749 61.111 0.00 0.00 0.00 2.78
2078 2169 0.887387 TAAACAGGGCAGCACGAACC 60.887 55.000 0.00 0.00 0.00 3.62
2079 2170 0.237498 GTAAACAGGGCAGCACGAAC 59.763 55.000 0.00 0.00 0.00 3.95
2213 2306 2.440599 GCCCTCAGCCCCAGAAAA 59.559 61.111 0.00 0.00 34.35 2.29
2280 2373 4.742201 CTCTGCACCACGGACGGG 62.742 72.222 0.00 0.00 0.00 5.28
2281 2374 3.991051 ACTCTGCACCACGGACGG 61.991 66.667 0.00 0.00 0.00 4.79
2282 2375 2.734723 CACTCTGCACCACGGACG 60.735 66.667 0.00 0.00 0.00 4.79
2307 2407 4.443266 GCGGCGAGCTGGTCTTCT 62.443 66.667 12.98 0.00 44.04 2.85
2331 2431 5.305585 TGCTCCAGTTTCTTTCGAGTATTT 58.694 37.500 0.00 0.00 0.00 1.40
2353 2453 5.359009 ACCATTTTTGACTAGCATCAGGATG 59.641 40.000 4.91 4.91 41.60 3.51
2354 2454 5.513233 ACCATTTTTGACTAGCATCAGGAT 58.487 37.500 0.00 0.00 0.00 3.24
2355 2455 4.922206 ACCATTTTTGACTAGCATCAGGA 58.078 39.130 0.00 0.00 0.00 3.86
2356 2456 5.649782 AACCATTTTTGACTAGCATCAGG 57.350 39.130 0.00 0.00 0.00 3.86
2357 2457 7.820648 ACTTAACCATTTTTGACTAGCATCAG 58.179 34.615 0.00 0.00 0.00 2.90
2358 2458 7.759489 ACTTAACCATTTTTGACTAGCATCA 57.241 32.000 0.00 0.00 0.00 3.07
2359 2459 9.129209 GAAACTTAACCATTTTTGACTAGCATC 57.871 33.333 0.00 0.00 0.00 3.91
2360 2460 8.088365 GGAAACTTAACCATTTTTGACTAGCAT 58.912 33.333 0.00 0.00 0.00 3.79
2361 2461 7.286775 AGGAAACTTAACCATTTTTGACTAGCA 59.713 33.333 0.00 0.00 37.44 3.49
2362 2462 7.658261 AGGAAACTTAACCATTTTTGACTAGC 58.342 34.615 0.00 0.00 37.44 3.42
2364 2464 8.789762 GCTAGGAAACTTAACCATTTTTGACTA 58.210 33.333 0.00 0.00 43.67 2.59
2365 2465 7.505923 AGCTAGGAAACTTAACCATTTTTGACT 59.494 33.333 0.00 0.00 43.67 3.41
2366 2466 7.658261 AGCTAGGAAACTTAACCATTTTTGAC 58.342 34.615 0.00 0.00 43.67 3.18
2453 2559 7.171508 CGATTGACATGCTAAGCTAAAGGATAA 59.828 37.037 3.16 0.00 0.00 1.75
2454 2560 6.646653 CGATTGACATGCTAAGCTAAAGGATA 59.353 38.462 3.16 0.00 0.00 2.59
2459 2565 6.237728 CGTAACGATTGACATGCTAAGCTAAA 60.238 38.462 0.00 0.00 0.00 1.85
2474 2580 7.231607 ACAATAGCAGTAAAACGTAACGATTG 58.768 34.615 0.00 2.20 0.00 2.67
2475 2581 7.355332 ACAATAGCAGTAAAACGTAACGATT 57.645 32.000 0.00 0.00 0.00 3.34
2483 2589 6.655062 TGAAGACAACAATAGCAGTAAAACG 58.345 36.000 0.00 0.00 0.00 3.60
2490 2596 5.868043 TCACATGAAGACAACAATAGCAG 57.132 39.130 0.00 0.00 0.00 4.24
2548 2663 6.765989 CACAAGGTATTCCTCAAATATCCGAA 59.234 38.462 0.00 0.00 44.35 4.30
2556 2671 4.098914 AGCACACAAGGTATTCCTCAAA 57.901 40.909 0.00 0.00 44.35 2.69
2558 2673 5.045942 TCAATAGCACACAAGGTATTCCTCA 60.046 40.000 0.00 0.00 44.35 3.86
2597 2712 7.063544 GCTCAACACGAGTCTACAAGAATAAAT 59.936 37.037 0.00 0.00 44.33 1.40
2621 2736 1.251251 AAAATCTGCGCTTGAAGGCT 58.749 45.000 9.73 0.00 0.00 4.58
2626 2741 2.487762 CCCTACAAAAATCTGCGCTTGA 59.512 45.455 9.73 7.63 0.00 3.02
2637 2752 8.841300 GGAAAAATTGTTAATGCCCTACAAAAA 58.159 29.630 0.00 0.00 35.62 1.94
2647 2762 7.583230 TGCATTTGAGGAAAAATTGTTAATGC 58.417 30.769 14.78 14.78 43.24 3.56
2650 2765 8.772705 GTCATGCATTTGAGGAAAAATTGTTAA 58.227 29.630 0.00 0.00 0.00 2.01
2653 2768 5.702209 GGTCATGCATTTGAGGAAAAATTGT 59.298 36.000 0.00 0.00 0.00 2.71
2668 2783 6.491403 GGATTGATAAACCTTAGGTCATGCAT 59.509 38.462 3.62 0.00 33.12 3.96
2671 2786 6.017934 CACGGATTGATAAACCTTAGGTCATG 60.018 42.308 3.62 0.00 33.12 3.07
2698 2813 4.018050 AGAGGCCATTTCATCCTACACTTT 60.018 41.667 5.01 0.00 0.00 2.66
2700 2815 3.118531 AGAGGCCATTTCATCCTACACT 58.881 45.455 5.01 0.00 0.00 3.55
2717 2833 0.955919 GGCGGGTTGTTTGAGAGAGG 60.956 60.000 0.00 0.00 0.00 3.69
2734 2850 7.728847 AAGAAATTTCTTGTATTTGGTTGGC 57.271 32.000 28.35 0.00 45.27 4.52
2754 2871 3.621214 CGGATGTGTTGGGGACATAAGAA 60.621 47.826 0.00 0.00 41.10 2.52
2759 2876 0.918983 ATCGGATGTGTTGGGGACAT 59.081 50.000 0.00 0.00 41.10 3.06
2773 2890 7.433708 CTATACAATTTGCCATTGTATCGGA 57.566 36.000 24.38 13.20 46.39 4.55
2776 2893 6.863126 GCACCTATACAATTTGCCATTGTATC 59.137 38.462 24.38 12.90 46.39 2.24
2811 2928 9.823647 ATTACACTTTTATCATCATCTCTTCGT 57.176 29.630 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.