Multiple sequence alignment - TraesCS2A01G398100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G398100 chr2A 100.000 6232 0 0 1 6232 651616042 651609811 0.000000e+00 11509
1 TraesCS2A01G398100 chr2D 93.198 3043 150 26 4 3029 506798671 506795669 0.000000e+00 4420
2 TraesCS2A01G398100 chr2D 98.149 1459 26 1 3133 4590 506795670 506794212 0.000000e+00 2543
3 TraesCS2A01G398100 chr2D 91.345 1606 75 31 4669 6232 506794133 506792550 0.000000e+00 2137
4 TraesCS2A01G398100 chr2D 96.667 60 2 0 4602 4661 506794229 506794170 3.980000e-17 100
5 TraesCS2A01G398100 chr2B 92.720 1566 70 11 4690 6232 594848328 594846784 0.000000e+00 2220
6 TraesCS2A01G398100 chr2B 96.560 1192 41 0 3133 4324 594850282 594849091 0.000000e+00 1975
7 TraesCS2A01G398100 chr2B 94.154 1300 53 10 1749 3029 594851576 594850281 0.000000e+00 1958
8 TraesCS2A01G398100 chr2B 93.917 822 35 7 822 1631 594852402 594851584 0.000000e+00 1227
9 TraesCS2A01G398100 chr2B 98.206 223 4 0 4304 4526 594848918 594848696 2.110000e-104 390
10 TraesCS2A01G398100 chr2B 95.683 139 4 2 4523 4660 594848581 594848444 8.130000e-54 222
11 TraesCS2A01G398100 chr7A 100.000 107 0 0 3026 3132 324923581 324923687 1.370000e-46 198
12 TraesCS2A01G398100 chr7A 95.370 108 4 1 3028 3134 538102528 538102635 2.990000e-38 171
13 TraesCS2A01G398100 chr3A 95.370 108 4 1 3028 3134 482063236 482063129 2.990000e-38 171
14 TraesCS2A01G398100 chr5B 96.117 103 4 0 3028 3130 115399119 115399221 1.070000e-37 169
15 TraesCS2A01G398100 chr5B 95.192 104 5 0 3028 3131 392090476 392090373 1.390000e-36 165
16 TraesCS2A01G398100 chr5B 95.192 104 5 0 3028 3131 392130513 392130410 1.390000e-36 165
17 TraesCS2A01G398100 chr5A 95.238 105 5 0 3026 3130 504959499 504959603 3.860000e-37 167
18 TraesCS2A01G398100 chrUn 95.192 104 5 0 3028 3131 267455568 267455465 1.390000e-36 165
19 TraesCS2A01G398100 chr1A 90.678 118 8 3 3027 3143 19894865 19894980 3.010000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G398100 chr2A 651609811 651616042 6231 True 11509 11509 100.000000 1 6232 1 chr2A.!!$R1 6231
1 TraesCS2A01G398100 chr2D 506792550 506798671 6121 True 2300 4420 94.839750 4 6232 4 chr2D.!!$R1 6228
2 TraesCS2A01G398100 chr2B 594846784 594852402 5618 True 1332 2220 95.206667 822 6232 6 chr2B.!!$R1 5410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.046397 AAGGGGAGGGGATACTTGCT 59.954 55.000 0.00 0.0 0.00 3.91 F
484 486 0.307760 CTCGTCTTTGCAACCACCAC 59.692 55.000 0.00 0.0 0.00 4.16 F
564 566 0.473326 GTCCCTACTCCTCTAGCCGA 59.527 60.000 0.00 0.0 0.00 5.54 F
621 623 0.958822 AGGCAACGACATGGGAAAAC 59.041 50.000 0.00 0.0 46.39 2.43 F
939 948 1.065199 GGATGACTGGTTGATGAGGCA 60.065 52.381 0.00 0.0 0.00 4.75 F
1347 1356 1.066858 ACATCGCATCTTCCTTCGTGT 60.067 47.619 0.00 0.0 0.00 4.49 F
1489 1507 1.070134 TGTGCTGTTCAGTGGAGTACC 59.930 52.381 1.78 0.0 0.00 3.34 F
3048 3088 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.0 0.00 2.83 F
4148 4188 1.211457 CCTTACCTGCTGGCTTCAGAT 59.789 52.381 9.95 0.0 40.86 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 1671 0.391228 TCGCAGAACAGTGTAGCCAA 59.609 50.000 0.00 0.00 0.00 4.52 R
1654 1672 0.391228 TTCGCAGAACAGTGTAGCCA 59.609 50.000 0.00 0.00 45.90 4.75 R
1661 1679 0.394565 AGGAGCTTTCGCAGAACAGT 59.605 50.000 0.00 0.00 45.90 3.55 R
1744 1762 0.687354 ATGTCGAGTTTGTGGAGGCT 59.313 50.000 0.00 0.00 0.00 4.58 R
1745 1763 0.798776 CATGTCGAGTTTGTGGAGGC 59.201 55.000 0.00 0.00 0.00 4.70 R
3028 3068 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85 R
3422 3462 0.588252 CTGAGTGTGCAACCTTTCCG 59.412 55.000 0.00 0.00 34.36 4.30 R
4743 5206 0.954938 TTGTGATTGCGCTGCTAGCA 60.955 50.000 18.22 18.22 42.58 3.49 R
5366 5832 0.036952 AGCATGTGACCTCAGAACGG 60.037 55.000 0.00 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.088097 CGAGCGAAAAACAAAATTACATTGA 57.912 32.000 0.00 0.00 0.00 2.57
36 37 9.838339 ACAAAATTACATTGAAAACCATACCAA 57.162 25.926 0.00 0.00 0.00 3.67
41 42 6.036577 ACATTGAAAACCATACCAACCATC 57.963 37.500 0.00 0.00 0.00 3.51
42 43 5.046663 ACATTGAAAACCATACCAACCATCC 60.047 40.000 0.00 0.00 0.00 3.51
53 54 2.890945 ACCAACCATCCTTTTTCTTCGG 59.109 45.455 0.00 0.00 0.00 4.30
55 56 3.057526 CCAACCATCCTTTTTCTTCGGTC 60.058 47.826 0.00 0.00 0.00 4.79
56 57 3.502123 ACCATCCTTTTTCTTCGGTCA 57.498 42.857 0.00 0.00 0.00 4.02
58 59 4.407365 ACCATCCTTTTTCTTCGGTCATT 58.593 39.130 0.00 0.00 0.00 2.57
119 120 0.046397 AAGGGGAGGGGATACTTGCT 59.954 55.000 0.00 0.00 0.00 3.91
120 121 0.695803 AGGGGAGGGGATACTTGCTG 60.696 60.000 0.00 0.00 0.00 4.41
137 138 4.634012 TGCTGAACACCCTTGTTATAGT 57.366 40.909 0.00 0.00 46.43 2.12
139 140 5.730550 TGCTGAACACCCTTGTTATAGTAG 58.269 41.667 0.00 0.00 46.43 2.57
155 156 8.029522 TGTTATAGTAGACTTTGAAGAGTGCAG 58.970 37.037 0.00 0.00 0.00 4.41
156 157 3.658709 AGTAGACTTTGAAGAGTGCAGC 58.341 45.455 0.00 0.00 0.00 5.25
164 165 1.687494 GAAGAGTGCAGCGCTAACCG 61.687 60.000 10.99 0.00 40.75 4.44
167 168 2.736995 GTGCAGCGCTAACCGTCA 60.737 61.111 10.99 0.00 39.71 4.35
169 170 2.736995 GCAGCGCTAACCGTCACA 60.737 61.111 10.99 0.00 39.71 3.58
176 177 2.605818 GCGCTAACCGTCACATGAAATA 59.394 45.455 0.00 0.00 39.71 1.40
177 178 3.062909 GCGCTAACCGTCACATGAAATAA 59.937 43.478 0.00 0.00 39.71 1.40
244 245 2.554032 GCAACACATACTTGCCTTCACT 59.446 45.455 0.00 0.00 38.48 3.41
249 250 2.093658 ACATACTTGCCTTCACTACCGG 60.094 50.000 0.00 0.00 0.00 5.28
252 254 3.262448 TTGCCTTCACTACCGGCCC 62.262 63.158 0.00 0.00 43.12 5.80
281 283 4.524802 TGGAGAAATAGGACCATGCAAT 57.475 40.909 0.00 0.00 0.00 3.56
282 284 4.209538 TGGAGAAATAGGACCATGCAATG 58.790 43.478 0.00 0.00 46.21 2.82
325 327 1.062587 CGGAGTCATCGCACCAAAATC 59.937 52.381 0.00 0.00 0.00 2.17
330 332 1.543802 TCATCGCACCAAAATCCAACC 59.456 47.619 0.00 0.00 0.00 3.77
344 346 1.403679 TCCAACCAACAACTTCGCTTG 59.596 47.619 0.00 0.00 0.00 4.01
353 355 2.032894 ACAACTTCGCTTGATTGACACG 60.033 45.455 0.00 0.00 0.00 4.49
368 370 2.884012 TGACACGTCAAATGCCAAGATT 59.116 40.909 0.00 0.00 36.53 2.40
381 383 3.067106 GCCAAGATTCGAAGAGACACAA 58.933 45.455 3.35 0.00 38.43 3.33
396 398 6.057533 AGAGACACAACAAATCTGATGACAA 58.942 36.000 0.00 0.00 0.00 3.18
412 414 2.042297 TGACAAATACCCTCATTGGCCA 59.958 45.455 0.00 0.00 30.86 5.36
415 417 3.706086 ACAAATACCCTCATTGGCCATTC 59.294 43.478 6.09 0.00 0.00 2.67
429 431 2.131183 GCCATTCGCTAGTGTCAGATC 58.869 52.381 2.66 0.00 0.00 2.75
436 438 2.537931 CGCTAGTGTCAGATCAGACGTC 60.538 54.545 7.70 7.70 41.41 4.34
452 454 0.742281 CGTCGTCGAGGTAGGGAGAA 60.742 60.000 6.77 0.00 39.71 2.87
454 456 0.617413 TCGTCGAGGTAGGGAGAAGT 59.383 55.000 4.85 0.00 0.00 3.01
477 479 5.049680 GTCTTATTCCAACTCGTCTTTGCAA 60.050 40.000 0.00 0.00 0.00 4.08
484 486 0.307760 CTCGTCTTTGCAACCACCAC 59.692 55.000 0.00 0.00 0.00 4.16
488 490 2.303175 GTCTTTGCAACCACCACCTTA 58.697 47.619 0.00 0.00 0.00 2.69
489 491 2.890945 GTCTTTGCAACCACCACCTTAT 59.109 45.455 0.00 0.00 0.00 1.73
494 496 2.040947 TGCAACCACCACCTTATCATCA 59.959 45.455 0.00 0.00 0.00 3.07
496 498 3.684908 CAACCACCACCTTATCATCACA 58.315 45.455 0.00 0.00 0.00 3.58
498 500 3.181329 ACCACCACCTTATCATCACAGA 58.819 45.455 0.00 0.00 0.00 3.41
499 501 3.055094 ACCACCACCTTATCATCACAGAC 60.055 47.826 0.00 0.00 0.00 3.51
501 503 2.168521 ACCACCTTATCATCACAGACGG 59.831 50.000 0.00 0.00 0.00 4.79
509 511 1.418264 TCATCACAGACGGGGAAACAA 59.582 47.619 0.00 0.00 0.00 2.83
517 519 2.027469 AGACGGGGAAACAAGACCATAC 60.027 50.000 0.00 0.00 0.00 2.39
521 523 3.937079 CGGGGAAACAAGACCATACTAAC 59.063 47.826 0.00 0.00 0.00 2.34
564 566 0.473326 GTCCCTACTCCTCTAGCCGA 59.527 60.000 0.00 0.00 0.00 5.54
581 583 1.679680 CCGATAACGAGGCCACTAGAA 59.320 52.381 5.01 0.00 42.66 2.10
589 591 2.755655 CGAGGCCACTAGAAGAGAGAAA 59.244 50.000 5.01 0.00 0.00 2.52
620 622 1.243902 GAGGCAACGACATGGGAAAA 58.756 50.000 0.00 0.00 46.39 2.29
621 623 0.958822 AGGCAACGACATGGGAAAAC 59.041 50.000 0.00 0.00 46.39 2.43
629 632 3.181480 ACGACATGGGAAAACTTTTGTGG 60.181 43.478 0.00 0.00 0.00 4.17
656 659 3.365472 AGGGTTGACAAAAGAGCAAGTT 58.635 40.909 0.00 0.00 0.00 2.66
675 678 6.019318 GCAAGTTACTTAACAAGTTGAGTCGA 60.019 38.462 10.54 2.64 42.81 4.20
676 679 7.307219 GCAAGTTACTTAACAAGTTGAGTCGAT 60.307 37.037 10.54 0.00 42.81 3.59
682 685 6.984474 ACTTAACAAGTTGAGTCGATGAGAAA 59.016 34.615 10.54 0.00 39.04 2.52
687 690 6.929049 ACAAGTTGAGTCGATGAGAAATAACA 59.071 34.615 10.54 0.00 0.00 2.41
692 695 9.302345 GTTGAGTCGATGAGAAATAACAATCTA 57.698 33.333 0.00 0.00 0.00 1.98
698 701 4.448210 TGAGAAATAACAATCTACCGGGC 58.552 43.478 6.32 0.00 0.00 6.13
702 705 2.632136 TAACAATCTACCGGGCGGCG 62.632 60.000 6.32 0.51 39.32 6.46
731 734 7.500227 CCTGATTAGCAATCTCAAACCTTGATA 59.500 37.037 9.34 0.00 39.30 2.15
851 860 4.284485 ACCGACGTTTTTATTGTCTTTGC 58.716 39.130 0.00 0.00 0.00 3.68
892 901 1.113253 CGACGTCGATTTCTGATCCG 58.887 55.000 33.35 0.30 43.02 4.18
908 917 2.522638 CCGACGGCAAACCTATCGC 61.523 63.158 0.00 0.00 39.60 4.58
928 937 1.542915 CACAAGCCTTTGGATGACTGG 59.457 52.381 0.00 0.00 38.66 4.00
936 945 3.693085 CCTTTGGATGACTGGTTGATGAG 59.307 47.826 0.00 0.00 0.00 2.90
939 948 1.065199 GGATGACTGGTTGATGAGGCA 60.065 52.381 0.00 0.00 0.00 4.75
1233 1242 1.952133 GACGTGTAACACCTGCGCA 60.952 57.895 10.98 10.98 35.74 6.09
1260 1269 5.919300 GAATTCGATTCACTGCAGGAGCAA 61.919 45.833 19.93 5.03 43.70 3.91
1343 1352 2.208431 CCTGACATCGCATCTTCCTTC 58.792 52.381 0.00 0.00 0.00 3.46
1346 1355 1.590238 GACATCGCATCTTCCTTCGTG 59.410 52.381 0.00 0.00 0.00 4.35
1347 1356 1.066858 ACATCGCATCTTCCTTCGTGT 60.067 47.619 0.00 0.00 0.00 4.49
1348 1357 2.165641 ACATCGCATCTTCCTTCGTGTA 59.834 45.455 0.00 0.00 0.00 2.90
1353 1362 6.321848 TCGCATCTTCCTTCGTGTATATAA 57.678 37.500 0.00 0.00 0.00 0.98
1354 1363 6.920817 TCGCATCTTCCTTCGTGTATATAAT 58.079 36.000 0.00 0.00 0.00 1.28
1356 1365 7.966753 TCGCATCTTCCTTCGTGTATATAATAC 59.033 37.037 0.00 0.00 0.00 1.89
1357 1366 7.044901 CGCATCTTCCTTCGTGTATATAATACG 60.045 40.741 12.27 12.27 39.04 3.06
1358 1367 7.754027 GCATCTTCCTTCGTGTATATAATACGT 59.246 37.037 16.01 0.00 38.80 3.57
1370 1387 9.419297 GTGTATATAATACGTGATTGATGTGGT 57.581 33.333 0.00 0.00 0.00 4.16
1395 1412 7.873739 AAGAAACAACTGAAGAAAAAGTGTG 57.126 32.000 0.00 0.00 0.00 3.82
1419 1436 6.149308 TGAATGGTGTTTAGATGCTAGTGTTG 59.851 38.462 0.00 0.00 0.00 3.33
1489 1507 1.070134 TGTGCTGTTCAGTGGAGTACC 59.930 52.381 1.78 0.00 0.00 3.34
1535 1553 5.862845 TCAATTGAGCCTCTAGATTCATCC 58.137 41.667 3.38 0.00 0.00 3.51
1547 1565 7.937942 CCTCTAGATTCATCCAATCATTCAGTT 59.062 37.037 0.00 0.00 43.27 3.16
1581 1599 8.032451 GGAATAGCTAACTAGAAGCCTCTTATG 58.968 40.741 15.26 0.00 41.02 1.90
1588 1606 2.716217 AGAAGCCTCTTATGTTGCACC 58.284 47.619 0.00 0.00 0.00 5.01
1628 1646 9.535878 CTAGATGTTAGAACTTGAAACCCTATC 57.464 37.037 0.00 0.00 0.00 2.08
1647 1665 6.564328 CCTATCAGGGTGAGTTTAAAATTGC 58.436 40.000 0.00 0.00 0.00 3.56
1648 1666 4.864704 TCAGGGTGAGTTTAAAATTGCC 57.135 40.909 0.00 0.00 0.00 4.52
1649 1667 3.254657 TCAGGGTGAGTTTAAAATTGCCG 59.745 43.478 0.00 0.00 0.00 5.69
1650 1668 3.005367 CAGGGTGAGTTTAAAATTGCCGT 59.995 43.478 0.00 0.00 0.00 5.68
1651 1669 3.254903 AGGGTGAGTTTAAAATTGCCGTC 59.745 43.478 0.00 0.00 0.00 4.79
1652 1670 3.254903 GGGTGAGTTTAAAATTGCCGTCT 59.745 43.478 0.00 0.00 0.00 4.18
1653 1671 4.261867 GGGTGAGTTTAAAATTGCCGTCTT 60.262 41.667 0.00 0.00 0.00 3.01
1654 1672 5.286438 GGTGAGTTTAAAATTGCCGTCTTT 58.714 37.500 0.00 0.00 0.00 2.52
1655 1673 5.174943 GGTGAGTTTAAAATTGCCGTCTTTG 59.825 40.000 0.00 0.00 0.00 2.77
1656 1674 5.174943 GTGAGTTTAAAATTGCCGTCTTTGG 59.825 40.000 0.00 0.00 0.00 3.28
1731 1749 1.774110 AATTGGGCGCCATCACATAA 58.226 45.000 30.85 11.11 31.53 1.90
1740 1758 4.935205 GGCGCCATCACATAATATAACTGA 59.065 41.667 24.80 0.00 0.00 3.41
1741 1759 5.586243 GGCGCCATCACATAATATAACTGAT 59.414 40.000 24.80 0.00 0.00 2.90
1742 1760 6.761242 GGCGCCATCACATAATATAACTGATA 59.239 38.462 24.80 0.00 0.00 2.15
1743 1761 7.442364 GGCGCCATCACATAATATAACTGATAT 59.558 37.037 24.80 0.00 31.57 1.63
1744 1762 9.476202 GCGCCATCACATAATATAACTGATATA 57.524 33.333 0.00 0.00 30.01 0.86
1758 1776 5.283457 ACTGATATAGCCTCCACAAACTC 57.717 43.478 0.00 0.00 0.00 3.01
1768 1786 2.738846 CTCCACAAACTCGACATGGAAG 59.261 50.000 0.00 0.00 38.95 3.46
1799 1817 6.184580 TGTTACATGTGTTTGACGTTTTCT 57.815 33.333 9.11 0.00 0.00 2.52
1934 1952 8.500753 TCACTAAAAAGTACACTGTTCATGTT 57.499 30.769 0.00 0.00 0.00 2.71
1989 2007 5.539955 ACTGGTCCACTTTGCATTCTTTTAT 59.460 36.000 0.00 0.00 0.00 1.40
1990 2008 6.041979 ACTGGTCCACTTTGCATTCTTTTATT 59.958 34.615 0.00 0.00 0.00 1.40
1991 2009 6.825610 TGGTCCACTTTGCATTCTTTTATTT 58.174 32.000 0.00 0.00 0.00 1.40
1992 2010 7.957002 TGGTCCACTTTGCATTCTTTTATTTA 58.043 30.769 0.00 0.00 0.00 1.40
2042 2060 1.697432 TGACCCACCTGACTAAACTGG 59.303 52.381 0.00 0.00 35.48 4.00
2074 2093 7.777910 TCGTAATCATTAATTTGATCTTGGGGT 59.222 33.333 0.00 0.00 35.29 4.95
2088 2107 9.936759 TTGATCTTGGGGTAATTTTATTTCAAC 57.063 29.630 0.00 0.00 0.00 3.18
2148 2168 9.209175 CTTTCTACTTGCTACATACTTGAAAGT 57.791 33.333 0.71 0.71 42.91 2.66
2169 2189 9.720667 GAAAGTAAAACGGTTATTGTTTAGTGT 57.279 29.630 0.00 0.00 38.52 3.55
2203 2223 1.500474 AAGCATGAATCTCCTCCCGA 58.500 50.000 0.00 0.00 0.00 5.14
2558 2578 4.228912 AGTTTCTTTTTGGAGATGCGTG 57.771 40.909 0.00 0.00 0.00 5.34
2869 2889 5.290885 TCGACATTACCGTGATGAATTTCTG 59.709 40.000 10.10 0.00 0.00 3.02
2937 2973 5.218885 TGACAACATTCAGTAATTTTGCCG 58.781 37.500 0.00 0.00 36.60 5.69
3010 3047 5.734720 TGGAACAGTAAGAAATGCTCCTAG 58.265 41.667 0.00 0.00 33.66 3.02
3037 3077 9.774413 ACAATAAATATTAAAGTACTCCCTCCG 57.226 33.333 0.00 0.00 0.00 4.63
3038 3078 9.774413 CAATAAATATTAAAGTACTCCCTCCGT 57.226 33.333 0.00 0.00 0.00 4.69
3040 3080 9.993454 ATAAATATTAAAGTACTCCCTCCGTTC 57.007 33.333 0.00 0.00 0.00 3.95
3041 3081 7.427989 AATATTAAAGTACTCCCTCCGTTCA 57.572 36.000 0.00 0.00 0.00 3.18
3042 3082 4.525912 TTAAAGTACTCCCTCCGTTCAC 57.474 45.455 0.00 0.00 0.00 3.18
3043 3083 2.305858 AAGTACTCCCTCCGTTCACT 57.694 50.000 0.00 0.00 0.00 3.41
3044 3084 2.305858 AGTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
3045 3085 2.606378 AGTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
3046 3086 2.970640 AGTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
3047 3087 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
3048 3088 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
3049 3089 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
3050 3090 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
3051 3091 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
3052 3092 3.388676 TCCCTCCGTTCACTTTTGTAAGA 59.611 43.478 0.00 0.00 35.30 2.10
3053 3093 3.497262 CCCTCCGTTCACTTTTGTAAGAC 59.503 47.826 0.00 0.00 35.30 3.01
3054 3094 3.183775 CCTCCGTTCACTTTTGTAAGACG 59.816 47.826 0.00 0.00 35.30 4.18
3055 3095 3.784338 TCCGTTCACTTTTGTAAGACGT 58.216 40.909 0.00 0.00 35.30 4.34
3056 3096 4.183101 TCCGTTCACTTTTGTAAGACGTT 58.817 39.130 0.00 0.00 35.30 3.99
3057 3097 4.630940 TCCGTTCACTTTTGTAAGACGTTT 59.369 37.500 0.00 0.00 35.30 3.60
3058 3098 5.122082 TCCGTTCACTTTTGTAAGACGTTTT 59.878 36.000 0.00 0.00 35.30 2.43
3059 3099 6.312426 TCCGTTCACTTTTGTAAGACGTTTTA 59.688 34.615 0.00 0.00 35.30 1.52
3060 3100 6.626095 CCGTTCACTTTTGTAAGACGTTTTAG 59.374 38.462 0.00 0.00 35.30 1.85
3061 3101 6.626095 CGTTCACTTTTGTAAGACGTTTTAGG 59.374 38.462 0.00 0.00 35.30 2.69
3062 3102 6.051646 TCACTTTTGTAAGACGTTTTAGGC 57.948 37.500 0.00 0.00 35.30 3.93
3063 3103 5.585445 TCACTTTTGTAAGACGTTTTAGGCA 59.415 36.000 0.00 0.00 35.30 4.75
3064 3104 6.261381 TCACTTTTGTAAGACGTTTTAGGCAT 59.739 34.615 0.00 0.00 35.30 4.40
3065 3105 6.915843 CACTTTTGTAAGACGTTTTAGGCATT 59.084 34.615 0.00 0.00 35.30 3.56
3066 3106 7.434013 CACTTTTGTAAGACGTTTTAGGCATTT 59.566 33.333 0.00 0.00 35.30 2.32
3067 3107 8.623030 ACTTTTGTAAGACGTTTTAGGCATTTA 58.377 29.630 0.00 0.00 35.30 1.40
3068 3108 9.453325 CTTTTGTAAGACGTTTTAGGCATTTAA 57.547 29.630 0.00 0.00 32.92 1.52
3069 3109 9.453325 TTTTGTAAGACGTTTTAGGCATTTAAG 57.547 29.630 0.00 0.00 0.00 1.85
3070 3110 7.966246 TGTAAGACGTTTTAGGCATTTAAGA 57.034 32.000 0.00 0.00 0.00 2.10
3071 3111 8.556213 TGTAAGACGTTTTAGGCATTTAAGAT 57.444 30.769 0.00 0.00 0.00 2.40
3072 3112 9.656040 TGTAAGACGTTTTAGGCATTTAAGATA 57.344 29.630 0.00 0.00 0.00 1.98
3075 3115 8.556213 AGACGTTTTAGGCATTTAAGATAACA 57.444 30.769 0.00 0.00 0.00 2.41
3076 3116 8.448615 AGACGTTTTAGGCATTTAAGATAACAC 58.551 33.333 0.00 0.00 0.00 3.32
3077 3117 7.532571 ACGTTTTAGGCATTTAAGATAACACC 58.467 34.615 0.00 0.00 0.00 4.16
3078 3118 6.970613 CGTTTTAGGCATTTAAGATAACACCC 59.029 38.462 0.00 0.00 0.00 4.61
3079 3119 7.362229 CGTTTTAGGCATTTAAGATAACACCCA 60.362 37.037 0.00 0.00 0.00 4.51
3080 3120 8.308207 GTTTTAGGCATTTAAGATAACACCCAA 58.692 33.333 0.00 0.00 0.00 4.12
3081 3121 8.423906 TTTAGGCATTTAAGATAACACCCAAA 57.576 30.769 0.00 0.00 0.00 3.28
3082 3122 6.926630 AGGCATTTAAGATAACACCCAAAA 57.073 33.333 0.00 0.00 0.00 2.44
3083 3123 6.697395 AGGCATTTAAGATAACACCCAAAAC 58.303 36.000 0.00 0.00 0.00 2.43
3084 3124 6.268847 AGGCATTTAAGATAACACCCAAAACA 59.731 34.615 0.00 0.00 0.00 2.83
3085 3125 6.589907 GGCATTTAAGATAACACCCAAAACAG 59.410 38.462 0.00 0.00 0.00 3.16
3086 3126 7.151976 GCATTTAAGATAACACCCAAAACAGT 58.848 34.615 0.00 0.00 0.00 3.55
3087 3127 7.655732 GCATTTAAGATAACACCCAAAACAGTT 59.344 33.333 0.00 0.00 0.00 3.16
3088 3128 9.191995 CATTTAAGATAACACCCAAAACAGTTC 57.808 33.333 0.00 0.00 0.00 3.01
3089 3129 7.883391 TTAAGATAACACCCAAAACAGTTCA 57.117 32.000 0.00 0.00 0.00 3.18
3090 3130 6.783708 AAGATAACACCCAAAACAGTTCAA 57.216 33.333 0.00 0.00 0.00 2.69
3091 3131 6.976934 AGATAACACCCAAAACAGTTCAAT 57.023 33.333 0.00 0.00 0.00 2.57
3092 3132 7.360113 AGATAACACCCAAAACAGTTCAATT 57.640 32.000 0.00 0.00 0.00 2.32
3093 3133 7.791029 AGATAACACCCAAAACAGTTCAATTT 58.209 30.769 0.00 0.00 0.00 1.82
3094 3134 7.926018 AGATAACACCCAAAACAGTTCAATTTC 59.074 33.333 0.00 0.00 0.00 2.17
3095 3135 5.413309 ACACCCAAAACAGTTCAATTTCA 57.587 34.783 0.00 0.00 0.00 2.69
3096 3136 5.418676 ACACCCAAAACAGTTCAATTTCAG 58.581 37.500 0.00 0.00 0.00 3.02
3097 3137 4.270808 CACCCAAAACAGTTCAATTTCAGC 59.729 41.667 0.00 0.00 0.00 4.26
3098 3138 4.162131 ACCCAAAACAGTTCAATTTCAGCT 59.838 37.500 0.00 0.00 0.00 4.24
3099 3139 4.508861 CCCAAAACAGTTCAATTTCAGCTG 59.491 41.667 7.63 7.63 0.00 4.24
3100 3140 5.111293 CCAAAACAGTTCAATTTCAGCTGT 58.889 37.500 14.67 0.00 41.51 4.40
3101 3141 5.232838 CCAAAACAGTTCAATTTCAGCTGTC 59.767 40.000 14.67 0.00 39.19 3.51
3102 3142 5.841957 AAACAGTTCAATTTCAGCTGTCT 57.158 34.783 14.67 0.00 39.19 3.41
3103 3143 5.841957 AACAGTTCAATTTCAGCTGTCTT 57.158 34.783 14.67 3.02 39.19 3.01
3104 3144 6.942532 AACAGTTCAATTTCAGCTGTCTTA 57.057 33.333 14.67 0.00 39.19 2.10
3105 3145 6.942532 ACAGTTCAATTTCAGCTGTCTTAA 57.057 33.333 14.67 4.81 35.78 1.85
3106 3146 7.333528 ACAGTTCAATTTCAGCTGTCTTAAA 57.666 32.000 14.67 7.20 35.78 1.52
3107 3147 7.196331 ACAGTTCAATTTCAGCTGTCTTAAAC 58.804 34.615 14.67 11.99 35.78 2.01
3108 3148 6.358030 CAGTTCAATTTCAGCTGTCTTAAACG 59.642 38.462 14.67 2.54 0.00 3.60
3109 3149 6.038271 AGTTCAATTTCAGCTGTCTTAAACGT 59.962 34.615 14.67 0.00 0.00 3.99
3110 3150 5.985781 TCAATTTCAGCTGTCTTAAACGTC 58.014 37.500 14.67 0.00 0.00 4.34
3111 3151 5.758296 TCAATTTCAGCTGTCTTAAACGTCT 59.242 36.000 14.67 0.00 0.00 4.18
3112 3152 6.260050 TCAATTTCAGCTGTCTTAAACGTCTT 59.740 34.615 14.67 0.00 0.00 3.01
3113 3153 7.439955 TCAATTTCAGCTGTCTTAAACGTCTTA 59.560 33.333 14.67 0.00 0.00 2.10
3114 3154 6.520792 TTTCAGCTGTCTTAAACGTCTTAC 57.479 37.500 14.67 0.00 0.00 2.34
3115 3155 5.190992 TCAGCTGTCTTAAACGTCTTACA 57.809 39.130 14.67 0.00 0.00 2.41
3116 3156 5.593968 TCAGCTGTCTTAAACGTCTTACAA 58.406 37.500 14.67 0.00 0.00 2.41
3117 3157 6.044046 TCAGCTGTCTTAAACGTCTTACAAA 58.956 36.000 14.67 0.00 0.00 2.83
3118 3158 6.535865 TCAGCTGTCTTAAACGTCTTACAAAA 59.464 34.615 14.67 0.00 0.00 2.44
3119 3159 6.846283 CAGCTGTCTTAAACGTCTTACAAAAG 59.154 38.462 5.25 0.00 0.00 2.27
3120 3160 6.537660 AGCTGTCTTAAACGTCTTACAAAAGT 59.462 34.615 0.00 0.00 34.13 2.66
3121 3161 6.627671 GCTGTCTTAAACGTCTTACAAAAGTG 59.372 38.462 0.00 0.00 34.13 3.16
3122 3162 7.464977 GCTGTCTTAAACGTCTTACAAAAGTGA 60.465 37.037 0.00 0.00 34.13 3.41
3123 3163 8.254178 TGTCTTAAACGTCTTACAAAAGTGAA 57.746 30.769 0.00 0.00 34.13 3.18
3124 3164 8.170553 TGTCTTAAACGTCTTACAAAAGTGAAC 58.829 33.333 0.00 0.00 34.13 3.18
3125 3165 8.170553 GTCTTAAACGTCTTACAAAAGTGAACA 58.829 33.333 0.00 0.00 34.13 3.18
3126 3166 8.385111 TCTTAAACGTCTTACAAAAGTGAACAG 58.615 33.333 0.00 0.00 34.13 3.16
3127 3167 6.730960 AAACGTCTTACAAAAGTGAACAGA 57.269 33.333 0.00 0.00 34.13 3.41
3128 3168 5.968387 ACGTCTTACAAAAGTGAACAGAG 57.032 39.130 0.00 0.00 34.13 3.35
3129 3169 4.809426 ACGTCTTACAAAAGTGAACAGAGG 59.191 41.667 0.00 0.00 34.13 3.69
3130 3170 5.047847 CGTCTTACAAAAGTGAACAGAGGA 58.952 41.667 0.00 0.00 34.13 3.71
3131 3171 5.522460 CGTCTTACAAAAGTGAACAGAGGAA 59.478 40.000 0.00 0.00 34.13 3.36
3323 3363 9.906660 CAAAATTAGTTGGCAATACTGTTTCTA 57.093 29.630 1.92 0.00 0.00 2.10
3422 3462 2.680339 GCAGTCTGGAAAAGATGCTACC 59.320 50.000 1.14 0.00 37.23 3.18
3455 3495 2.441164 TCAGCGGGCTCCTCTCTC 60.441 66.667 0.00 0.00 0.00 3.20
3491 3531 5.061311 CGAAGCAGCATTGAAAAAGGTAATG 59.939 40.000 0.00 0.00 35.47 1.90
3536 3576 1.754226 TGGGTGCTTTTTCACTGGAAC 59.246 47.619 0.00 0.00 37.16 3.62
3754 3794 4.541250 TTGATGGGGATAAGGCTCAATT 57.459 40.909 0.00 0.00 0.00 2.32
3954 3994 4.729868 AGCAAGGGAAGAAATAAGTGTGT 58.270 39.130 0.00 0.00 0.00 3.72
4148 4188 1.211457 CCTTACCTGCTGGCTTCAGAT 59.789 52.381 9.95 0.00 40.86 2.90
4297 4337 7.078228 GTGAGTTTCATGTCCTGTGAATAAAC 58.922 38.462 0.00 0.00 35.68 2.01
4299 4339 7.173218 TGAGTTTCATGTCCTGTGAATAAACTC 59.827 37.037 16.43 16.43 39.31 3.01
4319 4359 5.601662 ACTCTTCTTGTTCTCGTTGAATGA 58.398 37.500 0.00 0.00 36.99 2.57
4620 4972 1.228831 CCATTCACTGGTTGCCCCA 60.229 57.895 0.00 0.00 42.51 4.96
4661 5095 6.315091 TGCTGGCGTTTAATTTGTTACTTA 57.685 33.333 0.00 0.00 0.00 2.24
4662 5096 6.915349 TGCTGGCGTTTAATTTGTTACTTAT 58.085 32.000 0.00 0.00 0.00 1.73
4663 5097 6.804295 TGCTGGCGTTTAATTTGTTACTTATG 59.196 34.615 0.00 0.00 0.00 1.90
4664 5098 6.237463 GCTGGCGTTTAATTTGTTACTTATGC 60.237 38.462 0.00 0.00 0.00 3.14
4665 5099 6.094061 TGGCGTTTAATTTGTTACTTATGCC 58.906 36.000 0.00 0.00 36.81 4.40
4666 5100 6.094061 GGCGTTTAATTTGTTACTTATGCCA 58.906 36.000 0.00 0.00 36.32 4.92
4667 5101 6.252655 GGCGTTTAATTTGTTACTTATGCCAG 59.747 38.462 0.00 0.00 36.32 4.85
4682 5145 6.936900 ACTTATGCCAGTATACATTCATCACC 59.063 38.462 5.50 0.00 0.00 4.02
4719 5182 5.193663 TGATCTAGCTGCTTATGTCTGAC 57.806 43.478 7.79 0.00 0.00 3.51
4743 5206 2.568623 AATCCTTCGAAACTGCAGGT 57.431 45.000 19.93 9.19 0.00 4.00
4798 5261 1.341080 CTTCAGTTGGCCAAATGGGT 58.659 50.000 37.46 12.12 37.05 4.51
4802 5265 3.515562 TCAGTTGGCCAAATGGGTAAAT 58.484 40.909 37.46 4.94 37.05 1.40
4858 5321 1.580845 CCCAGGCTGTTGCTCTTTCG 61.581 60.000 14.43 0.00 39.59 3.46
4871 5334 3.132111 TGCTCTTTCGATGCAGGTATGTA 59.868 43.478 0.00 0.00 32.55 2.29
4903 5366 4.078639 ACCATCTTAGGCTAAGCACATC 57.921 45.455 26.00 0.00 35.76 3.06
4909 5372 2.887151 AGGCTAAGCACATCTTTGGT 57.113 45.000 0.00 0.00 36.25 3.67
4910 5373 5.188948 TCTTAGGCTAAGCACATCTTTGGTA 59.811 40.000 26.00 4.63 36.25 3.25
4916 5379 7.561356 AGGCTAAGCACATCTTTGGTATATTTT 59.439 33.333 0.00 0.00 36.25 1.82
4932 5395 9.249053 TGGTATATTTTCAAACCACACACATAT 57.751 29.630 0.00 0.00 37.09 1.78
4946 5411 9.424319 ACCACACACATATTTATATCTCGATTC 57.576 33.333 0.00 0.00 0.00 2.52
4997 5462 2.643044 CGCCGACGAAAGAGAGAAG 58.357 57.895 0.00 0.00 43.93 2.85
5048 5513 0.654683 CGCTAGCAGTTCAATCAGGC 59.345 55.000 16.45 0.00 0.00 4.85
5049 5514 0.654683 GCTAGCAGTTCAATCAGGCG 59.345 55.000 10.63 0.00 0.00 5.52
5050 5515 1.293924 CTAGCAGTTCAATCAGGCGG 58.706 55.000 0.00 0.00 0.00 6.13
5051 5516 0.744414 TAGCAGTTCAATCAGGCGGC 60.744 55.000 0.00 0.00 0.00 6.53
5052 5517 2.334946 GCAGTTCAATCAGGCGGCA 61.335 57.895 13.08 0.00 0.00 5.69
5053 5518 1.503542 CAGTTCAATCAGGCGGCAC 59.496 57.895 13.08 0.00 0.00 5.01
5054 5519 1.073025 AGTTCAATCAGGCGGCACA 59.927 52.632 13.08 0.00 0.00 4.57
5055 5520 0.322816 AGTTCAATCAGGCGGCACAT 60.323 50.000 13.08 0.00 0.00 3.21
5056 5521 0.099436 GTTCAATCAGGCGGCACATC 59.901 55.000 13.08 0.00 0.00 3.06
5057 5522 0.322366 TTCAATCAGGCGGCACATCA 60.322 50.000 13.08 0.00 0.00 3.07
5058 5523 0.745486 TCAATCAGGCGGCACATCAG 60.745 55.000 13.08 0.00 0.00 2.90
5059 5524 1.452651 AATCAGGCGGCACATCAGG 60.453 57.895 13.08 0.00 0.00 3.86
5093 5558 4.385405 GGCAGCTCCACGCAGACT 62.385 66.667 0.00 0.00 42.61 3.24
5135 5600 3.818961 ACATGTTCATGCTGTTTCTCG 57.181 42.857 12.00 0.00 0.00 4.04
5243 5708 5.860716 GGAAGATGACTGAGATTTTTGTTGC 59.139 40.000 0.00 0.00 0.00 4.17
5260 5725 0.687920 TGCCGTGGAGAAACATACCA 59.312 50.000 0.00 0.00 0.00 3.25
5279 5744 3.818773 ACCAAGATTTTGTGGTACCTTCG 59.181 43.478 14.36 0.00 46.47 3.79
5295 5760 7.279313 TGGTACCTTCGATTTTAATGAACTAGC 59.721 37.037 14.36 0.00 0.00 3.42
5334 5800 5.752955 TCTGCCAGTTTTTGCTTATGTTTTC 59.247 36.000 0.00 0.00 0.00 2.29
5349 5815 0.871722 TTTTCACGCCATCTGAACCG 59.128 50.000 0.00 0.00 0.00 4.44
5355 5821 0.108329 CGCCATCTGAACCGGTAGTT 60.108 55.000 8.00 0.00 43.07 2.24
5356 5822 1.674817 CGCCATCTGAACCGGTAGTTT 60.675 52.381 8.00 0.00 39.40 2.66
5358 5824 2.418976 GCCATCTGAACCGGTAGTTTTC 59.581 50.000 8.00 0.78 39.40 2.29
5360 5826 3.684788 CCATCTGAACCGGTAGTTTTCTG 59.315 47.826 8.00 5.58 39.40 3.02
5361 5827 3.396260 TCTGAACCGGTAGTTTTCTGG 57.604 47.619 8.00 0.00 39.40 3.86
5366 5832 3.397849 ACCGGTAGTTTTCTGGTTCTC 57.602 47.619 4.49 0.00 41.20 2.87
5367 5833 2.038164 ACCGGTAGTTTTCTGGTTCTCC 59.962 50.000 4.49 0.00 41.20 3.71
5385 5851 0.036952 CCGTTCTGAGGTCACATGCT 60.037 55.000 0.00 0.00 0.00 3.79
5386 5852 1.354040 CGTTCTGAGGTCACATGCTC 58.646 55.000 0.00 0.00 0.00 4.26
5387 5853 1.354040 GTTCTGAGGTCACATGCTCG 58.646 55.000 0.00 0.00 0.00 5.03
5602 6078 3.092511 ACCTCGCCATGGCCATCT 61.093 61.111 30.79 8.48 37.98 2.90
5633 6109 3.790416 AAAAGGCGTGGCTGGCAGA 62.790 57.895 20.86 0.00 36.77 4.26
5755 6231 0.741221 GGCTCACGTTGACATCCTCC 60.741 60.000 0.00 0.00 0.00 4.30
5756 6232 0.741221 GCTCACGTTGACATCCTCCC 60.741 60.000 0.00 0.00 0.00 4.30
5757 6233 0.108138 CTCACGTTGACATCCTCCCC 60.108 60.000 0.00 0.00 0.00 4.81
5759 6235 2.186903 CGTTGACATCCTCCCCGG 59.813 66.667 0.00 0.00 0.00 5.73
5845 6323 2.332159 GCCGTCGAGTAGCTAGCC 59.668 66.667 12.13 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.088097 TCAATGTAATTTTGTTTTTCGCTCG 57.912 32.000 0.00 0.00 31.22 5.03
1 2 9.695884 TTTTCAATGTAATTTTGTTTTTCGCTC 57.304 25.926 0.00 0.00 31.22 5.03
2 3 9.484326 GTTTTCAATGTAATTTTGTTTTTCGCT 57.516 25.926 0.00 0.00 31.22 4.93
18 19 5.046663 GGATGGTTGGTATGGTTTTCAATGT 60.047 40.000 0.00 0.00 0.00 2.71
24 25 6.328934 AGAAAAAGGATGGTTGGTATGGTTTT 59.671 34.615 0.00 0.00 0.00 2.43
34 35 3.568007 TGACCGAAGAAAAAGGATGGTTG 59.432 43.478 0.00 0.00 0.00 3.77
36 37 3.502123 TGACCGAAGAAAAAGGATGGT 57.498 42.857 0.00 0.00 0.00 3.55
41 42 3.317150 GGCAAATGACCGAAGAAAAAGG 58.683 45.455 0.00 0.00 0.00 3.11
53 54 4.440214 CGTCAAGCGGCAAATGAC 57.560 55.556 17.97 17.97 39.98 3.06
63 64 5.004726 GTGCAATTTTCAATATCCGTCAAGC 59.995 40.000 0.00 0.00 0.00 4.01
74 75 8.306038 TGCTATCACTTAAGTGCAATTTTCAAT 58.694 29.630 27.49 15.80 45.25 2.57
103 104 1.134068 GTTCAGCAAGTATCCCCTCCC 60.134 57.143 0.00 0.00 0.00 4.30
119 120 7.549147 AAGTCTACTATAACAAGGGTGTTCA 57.451 36.000 0.00 0.00 45.00 3.18
120 121 8.092687 TCAAAGTCTACTATAACAAGGGTGTTC 58.907 37.037 0.00 0.00 45.00 3.18
132 133 6.565234 GCTGCACTCTTCAAAGTCTACTATA 58.435 40.000 0.00 0.00 0.00 1.31
137 138 2.677199 CGCTGCACTCTTCAAAGTCTA 58.323 47.619 0.00 0.00 0.00 2.59
139 140 0.110464 GCGCTGCACTCTTCAAAGTC 60.110 55.000 0.00 0.00 0.00 3.01
155 156 0.793861 TTTCATGTGACGGTTAGCGC 59.206 50.000 2.98 0.00 0.00 5.92
156 157 4.850859 TTATTTCATGTGACGGTTAGCG 57.149 40.909 1.14 1.14 0.00 4.26
189 190 6.957631 TGCCCTAGTCAAGATTCTTTCAATA 58.042 36.000 0.00 0.00 0.00 1.90
190 191 5.819991 TGCCCTAGTCAAGATTCTTTCAAT 58.180 37.500 0.00 0.00 0.00 2.57
224 225 4.154195 GGTAGTGAAGGCAAGTATGTGTTG 59.846 45.833 0.00 0.00 0.00 3.33
244 245 4.425099 CAACCATTTGGGCCGGTA 57.575 55.556 1.90 0.00 42.05 4.02
252 254 5.016173 TGGTCCTATTTCTCCAACCATTTG 58.984 41.667 0.00 0.00 32.08 2.32
281 283 6.459573 CGACCTCTTCTTTTGATTTTGTTCCA 60.460 38.462 0.00 0.00 0.00 3.53
282 284 5.915196 CGACCTCTTCTTTTGATTTTGTTCC 59.085 40.000 0.00 0.00 0.00 3.62
289 291 4.040461 TGACTCCGACCTCTTCTTTTGATT 59.960 41.667 0.00 0.00 0.00 2.57
300 302 1.226717 GTGCGATGACTCCGACCTC 60.227 63.158 0.00 0.00 0.00 3.85
325 327 1.403679 TCAAGCGAAGTTGTTGGTTGG 59.596 47.619 9.89 0.00 40.48 3.77
330 332 3.725740 GTGTCAATCAAGCGAAGTTGTTG 59.274 43.478 0.00 0.00 0.00 3.33
353 355 4.393062 TCTCTTCGAATCTTGGCATTTGAC 59.607 41.667 0.00 0.00 0.00 3.18
358 360 3.265791 GTGTCTCTTCGAATCTTGGCAT 58.734 45.455 0.00 0.00 0.00 4.40
368 370 4.944048 TCAGATTTGTTGTGTCTCTTCGA 58.056 39.130 0.00 0.00 0.00 3.71
381 383 6.484288 TGAGGGTATTTGTCATCAGATTTGT 58.516 36.000 0.00 0.00 0.00 2.83
396 398 2.586425 CGAATGGCCAATGAGGGTATT 58.414 47.619 10.96 0.00 38.09 1.89
412 414 3.242903 CGTCTGATCTGACACTAGCGAAT 60.243 47.826 26.37 0.00 36.82 3.34
415 417 1.398739 ACGTCTGATCTGACACTAGCG 59.601 52.381 26.37 16.49 36.82 4.26
429 431 1.703438 CCCTACCTCGACGACGTCTG 61.703 65.000 24.36 17.54 40.69 3.51
436 438 1.015868 GACTTCTCCCTACCTCGACG 58.984 60.000 0.00 0.00 0.00 5.12
452 454 4.691216 GCAAAGACGAGTTGGAATAAGACT 59.309 41.667 0.00 0.00 0.00 3.24
454 456 4.637276 TGCAAAGACGAGTTGGAATAAGA 58.363 39.130 0.00 0.00 0.00 2.10
477 479 3.055094 GTCTGTGATGATAAGGTGGTGGT 60.055 47.826 0.00 0.00 0.00 4.16
484 486 2.039418 TCCCCGTCTGTGATGATAAGG 58.961 52.381 0.00 0.00 0.00 2.69
488 490 1.628340 TGTTTCCCCGTCTGTGATGAT 59.372 47.619 0.00 0.00 0.00 2.45
489 491 1.052617 TGTTTCCCCGTCTGTGATGA 58.947 50.000 0.00 0.00 0.00 2.92
494 496 0.108019 GGTCTTGTTTCCCCGTCTGT 59.892 55.000 0.00 0.00 0.00 3.41
496 498 1.064825 ATGGTCTTGTTTCCCCGTCT 58.935 50.000 0.00 0.00 0.00 4.18
498 500 1.982958 AGTATGGTCTTGTTTCCCCGT 59.017 47.619 0.00 0.00 0.00 5.28
499 501 2.781681 AGTATGGTCTTGTTTCCCCG 57.218 50.000 0.00 0.00 0.00 5.73
501 503 5.557866 AGTGTTAGTATGGTCTTGTTTCCC 58.442 41.667 0.00 0.00 0.00 3.97
509 511 7.490402 GCGTTGTTATTAGTGTTAGTATGGTCT 59.510 37.037 0.00 0.00 0.00 3.85
517 519 5.310489 CCGTTGCGTTGTTATTAGTGTTAG 58.690 41.667 0.00 0.00 0.00 2.34
521 523 2.481185 ACCCGTTGCGTTGTTATTAGTG 59.519 45.455 0.00 0.00 0.00 2.74
564 566 3.886505 CTCTCTTCTAGTGGCCTCGTTAT 59.113 47.826 3.32 0.00 0.00 1.89
577 579 4.354662 GTCCCCTTCCTTTCTCTCTTCTA 58.645 47.826 0.00 0.00 0.00 2.10
581 583 1.897647 CGGTCCCCTTCCTTTCTCTCT 60.898 57.143 0.00 0.00 0.00 3.10
589 591 3.864983 TTGCCTCGGTCCCCTTCCT 62.865 63.158 0.00 0.00 0.00 3.36
604 606 2.793278 AAGTTTTCCCATGTCGTTGC 57.207 45.000 0.00 0.00 0.00 4.17
610 612 2.482839 CGCCACAAAAGTTTTCCCATGT 60.483 45.455 0.00 0.00 0.00 3.21
620 622 1.303317 CCCTAGCCGCCACAAAAGT 60.303 57.895 0.00 0.00 0.00 2.66
621 623 0.893727 AACCCTAGCCGCCACAAAAG 60.894 55.000 0.00 0.00 0.00 2.27
629 632 0.521735 CTTTTGTCAACCCTAGCCGC 59.478 55.000 0.00 0.00 0.00 6.53
656 659 7.210718 TCTCATCGACTCAACTTGTTAAGTA 57.789 36.000 0.00 0.00 41.91 2.24
675 678 5.063880 GCCCGGTAGATTGTTATTTCTCAT 58.936 41.667 0.00 0.00 0.00 2.90
676 679 4.448210 GCCCGGTAGATTGTTATTTCTCA 58.552 43.478 0.00 0.00 0.00 3.27
682 685 0.250166 GCCGCCCGGTAGATTGTTAT 60.250 55.000 8.66 0.00 37.65 1.89
698 701 0.532862 ATTGCTAATCAGGTCCGCCG 60.533 55.000 0.00 0.00 40.50 6.46
702 705 4.336713 GGTTTGAGATTGCTAATCAGGTCC 59.663 45.833 10.26 0.00 40.42 4.46
704 707 5.184892 AGGTTTGAGATTGCTAATCAGGT 57.815 39.130 10.26 0.00 40.42 4.00
707 710 8.985315 ATATCAAGGTTTGAGATTGCTAATCA 57.015 30.769 10.26 0.00 43.98 2.57
743 746 5.058490 CCAAGATTGCCATTTCTTGTTTGT 58.942 37.500 13.64 0.00 44.70 2.83
744 747 5.299148 TCCAAGATTGCCATTTCTTGTTTG 58.701 37.500 13.64 3.32 44.70 2.93
851 860 1.203523 AGAGCAACTAGTCAGCCTTCG 59.796 52.381 14.57 0.00 0.00 3.79
892 901 1.017177 TGTGCGATAGGTTTGCCGTC 61.017 55.000 0.00 0.00 40.50 4.79
908 917 1.542915 CCAGTCATCCAAAGGCTTGTG 59.457 52.381 0.00 1.43 0.00 3.33
928 937 2.315246 GCGGATCTGCCTCATCAAC 58.685 57.895 16.13 0.00 0.00 3.18
1260 1269 1.371558 GGACTTGAAGTGCTCCCGT 59.628 57.895 9.72 0.00 33.44 5.28
1263 1272 1.205893 AGATCGGACTTGAAGTGCTCC 59.794 52.381 14.79 3.51 34.11 4.70
1343 1352 8.583765 CCACATCAATCACGTATTATATACACG 58.416 37.037 12.35 12.35 41.32 4.49
1353 1362 6.876789 TGTTTCTTACCACATCAATCACGTAT 59.123 34.615 0.00 0.00 0.00 3.06
1354 1363 6.224584 TGTTTCTTACCACATCAATCACGTA 58.775 36.000 0.00 0.00 0.00 3.57
1356 1365 5.605564 TGTTTCTTACCACATCAATCACG 57.394 39.130 0.00 0.00 0.00 4.35
1357 1366 6.857964 CAGTTGTTTCTTACCACATCAATCAC 59.142 38.462 0.00 0.00 0.00 3.06
1358 1367 6.770303 TCAGTTGTTTCTTACCACATCAATCA 59.230 34.615 0.00 0.00 0.00 2.57
1370 1387 8.788806 TCACACTTTTTCTTCAGTTGTTTCTTA 58.211 29.630 0.00 0.00 0.00 2.10
1395 1412 6.371548 TCAACACTAGCATCTAAACACCATTC 59.628 38.462 0.00 0.00 0.00 2.67
1419 1436 5.363101 TGCTGAAGAATGTGTCCTATGATC 58.637 41.667 0.00 0.00 0.00 2.92
1489 1507 3.773860 ACTATCTGCTGTCGTTCTCAG 57.226 47.619 0.00 0.00 36.18 3.35
1535 1553 9.265901 CTATTCCTAGGTACAACTGAATGATTG 57.734 37.037 9.08 0.00 0.00 2.67
1547 1565 7.447853 GCTTCTAGTTAGCTATTCCTAGGTACA 59.552 40.741 9.08 0.00 37.60 2.90
1581 1599 4.966787 TTGGGGCTCCGGTGCAAC 62.967 66.667 28.14 19.99 35.24 4.17
1588 1606 2.158755 ACATCTAGAATTTGGGGCTCCG 60.159 50.000 0.00 0.00 35.24 4.63
1628 1646 3.005367 ACGGCAATTTTAAACTCACCCTG 59.995 43.478 0.00 0.00 0.00 4.45
1647 1665 1.798813 GAACAGTGTAGCCAAAGACGG 59.201 52.381 0.00 0.00 0.00 4.79
1648 1666 2.476619 CAGAACAGTGTAGCCAAAGACG 59.523 50.000 0.00 0.00 0.00 4.18
1649 1667 2.224314 GCAGAACAGTGTAGCCAAAGAC 59.776 50.000 0.00 0.00 0.00 3.01
1650 1668 2.494059 GCAGAACAGTGTAGCCAAAGA 58.506 47.619 0.00 0.00 0.00 2.52
1651 1669 1.195448 CGCAGAACAGTGTAGCCAAAG 59.805 52.381 0.00 0.00 0.00 2.77
1652 1670 1.202592 TCGCAGAACAGTGTAGCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
1653 1671 0.391228 TCGCAGAACAGTGTAGCCAA 59.609 50.000 0.00 0.00 0.00 4.52
1654 1672 0.391228 TTCGCAGAACAGTGTAGCCA 59.609 50.000 0.00 0.00 45.90 4.75
1655 1673 1.461127 CTTTCGCAGAACAGTGTAGCC 59.539 52.381 0.00 0.00 45.90 3.93
1656 1674 1.136224 GCTTTCGCAGAACAGTGTAGC 60.136 52.381 0.00 0.33 45.90 3.58
1657 1675 2.408050 AGCTTTCGCAGAACAGTGTAG 58.592 47.619 0.00 0.00 45.90 2.74
1658 1676 2.404215 GAGCTTTCGCAGAACAGTGTA 58.596 47.619 0.00 0.00 45.90 2.90
1659 1677 1.221414 GAGCTTTCGCAGAACAGTGT 58.779 50.000 0.00 0.00 45.90 3.55
1660 1678 0.514691 GGAGCTTTCGCAGAACAGTG 59.485 55.000 0.00 0.00 45.90 3.66
1661 1679 0.394565 AGGAGCTTTCGCAGAACAGT 59.605 50.000 0.00 0.00 45.90 3.55
1731 1749 9.105844 AGTTTGTGGAGGCTATATCAGTTATAT 57.894 33.333 0.00 0.00 34.97 0.86
1740 1758 3.704566 TGTCGAGTTTGTGGAGGCTATAT 59.295 43.478 0.00 0.00 0.00 0.86
1741 1759 3.093814 TGTCGAGTTTGTGGAGGCTATA 58.906 45.455 0.00 0.00 0.00 1.31
1742 1760 1.899814 TGTCGAGTTTGTGGAGGCTAT 59.100 47.619 0.00 0.00 0.00 2.97
1743 1761 1.334160 TGTCGAGTTTGTGGAGGCTA 58.666 50.000 0.00 0.00 0.00 3.93
1744 1762 0.687354 ATGTCGAGTTTGTGGAGGCT 59.313 50.000 0.00 0.00 0.00 4.58
1745 1763 0.798776 CATGTCGAGTTTGTGGAGGC 59.201 55.000 0.00 0.00 0.00 4.70
1746 1764 1.001974 TCCATGTCGAGTTTGTGGAGG 59.998 52.381 0.00 0.00 34.23 4.30
1747 1765 2.455674 TCCATGTCGAGTTTGTGGAG 57.544 50.000 0.00 0.00 34.23 3.86
1758 1776 6.434596 TGTAACAAACAAATCTTCCATGTCG 58.565 36.000 0.00 0.00 34.29 4.35
1768 1786 7.008810 ACGTCAAACACATGTAACAAACAAATC 59.991 33.333 0.00 0.00 42.70 2.17
1824 1842 2.827921 GGGCAACAAAGAGTGGATTGAT 59.172 45.455 0.00 0.00 39.74 2.57
1934 1952 6.537301 CGGCATAAACATTTCCAGTTAGTAGA 59.463 38.462 0.00 0.00 0.00 2.59
2085 2104 7.080353 TCTTCACAGCATCAAGATAATGTTG 57.920 36.000 0.00 0.00 40.11 3.33
2088 2107 7.927048 TGAATCTTCACAGCATCAAGATAATG 58.073 34.615 0.00 0.00 36.12 1.90
2164 2184 9.906660 CATGCTTTTAAATCCAAAGTTACACTA 57.093 29.630 0.00 0.00 34.27 2.74
2536 2556 4.320202 GCACGCATCTCCAAAAAGAAACTA 60.320 41.667 0.00 0.00 0.00 2.24
2558 2578 4.978580 GGTTCTTCATGTTCTTTGAACAGC 59.021 41.667 16.50 0.33 36.50 4.40
2816 2836 6.552350 AGAAAATATGGCTAACAAGCATGGAT 59.448 34.615 0.00 0.00 36.33 3.41
2869 2889 5.730550 TCTTTATCATGTCAGGGTGTACAC 58.269 41.667 18.01 18.01 0.00 2.90
2969 3006 6.973843 TGTTCCAATGAGAAAAACATCTCTG 58.026 36.000 5.96 0.00 44.98 3.35
3027 3067 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
3028 3068 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
3029 3069 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
3030 3070 3.388676 TCTTACAAAAGTGAACGGAGGGA 59.611 43.478 0.00 0.00 34.13 4.20
3031 3071 3.497262 GTCTTACAAAAGTGAACGGAGGG 59.503 47.826 0.00 0.00 34.13 4.30
3032 3072 3.183775 CGTCTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 34.13 4.30
3033 3073 3.800506 ACGTCTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 34.13 4.63
3034 3074 3.784338 ACGTCTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 34.13 4.69
3035 3075 4.525411 AACGTCTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 34.13 4.44
3036 3076 6.626095 CCTAAAACGTCTTACAAAAGTGAACG 59.374 38.462 0.00 0.00 34.13 3.95
3037 3077 6.412943 GCCTAAAACGTCTTACAAAAGTGAAC 59.587 38.462 0.00 0.00 34.13 3.18
3038 3078 6.093771 TGCCTAAAACGTCTTACAAAAGTGAA 59.906 34.615 0.00 0.00 34.13 3.18
3039 3079 5.585445 TGCCTAAAACGTCTTACAAAAGTGA 59.415 36.000 0.00 0.00 34.13 3.41
3040 3080 5.812652 TGCCTAAAACGTCTTACAAAAGTG 58.187 37.500 0.00 0.00 34.13 3.16
3041 3081 6.628919 ATGCCTAAAACGTCTTACAAAAGT 57.371 33.333 0.00 0.00 34.13 2.66
3042 3082 7.924103 AAATGCCTAAAACGTCTTACAAAAG 57.076 32.000 0.00 0.00 0.00 2.27
3043 3083 9.453325 CTTAAATGCCTAAAACGTCTTACAAAA 57.547 29.630 0.00 0.00 0.00 2.44
3044 3084 8.838365 TCTTAAATGCCTAAAACGTCTTACAAA 58.162 29.630 0.00 0.00 0.00 2.83
3045 3085 8.380743 TCTTAAATGCCTAAAACGTCTTACAA 57.619 30.769 0.00 0.00 0.00 2.41
3046 3086 7.966246 TCTTAAATGCCTAAAACGTCTTACA 57.034 32.000 0.00 0.00 0.00 2.41
3049 3089 9.005777 TGTTATCTTAAATGCCTAAAACGTCTT 57.994 29.630 0.00 0.00 0.00 3.01
3050 3090 8.448615 GTGTTATCTTAAATGCCTAAAACGTCT 58.551 33.333 0.00 0.00 0.00 4.18
3051 3091 7.695201 GGTGTTATCTTAAATGCCTAAAACGTC 59.305 37.037 0.00 0.00 0.00 4.34
3052 3092 7.362315 GGGTGTTATCTTAAATGCCTAAAACGT 60.362 37.037 0.00 0.00 0.00 3.99
3053 3093 6.970613 GGGTGTTATCTTAAATGCCTAAAACG 59.029 38.462 0.00 0.00 0.00 3.60
3054 3094 7.832769 TGGGTGTTATCTTAAATGCCTAAAAC 58.167 34.615 0.00 0.00 0.00 2.43
3055 3095 8.423906 TTGGGTGTTATCTTAAATGCCTAAAA 57.576 30.769 0.00 0.00 0.00 1.52
3056 3096 8.423906 TTTGGGTGTTATCTTAAATGCCTAAA 57.576 30.769 0.00 0.00 0.00 1.85
3057 3097 8.308207 GTTTTGGGTGTTATCTTAAATGCCTAA 58.692 33.333 0.00 0.00 0.00 2.69
3058 3098 7.451877 TGTTTTGGGTGTTATCTTAAATGCCTA 59.548 33.333 0.00 0.00 0.00 3.93
3059 3099 6.268847 TGTTTTGGGTGTTATCTTAAATGCCT 59.731 34.615 0.00 0.00 0.00 4.75
3060 3100 6.459923 TGTTTTGGGTGTTATCTTAAATGCC 58.540 36.000 0.00 0.00 0.00 4.40
3061 3101 7.151976 ACTGTTTTGGGTGTTATCTTAAATGC 58.848 34.615 0.00 0.00 0.00 3.56
3062 3102 9.191995 GAACTGTTTTGGGTGTTATCTTAAATG 57.808 33.333 0.00 0.00 0.00 2.32
3063 3103 8.919145 TGAACTGTTTTGGGTGTTATCTTAAAT 58.081 29.630 0.00 0.00 0.00 1.40
3064 3104 8.294954 TGAACTGTTTTGGGTGTTATCTTAAA 57.705 30.769 0.00 0.00 0.00 1.52
3065 3105 7.883391 TGAACTGTTTTGGGTGTTATCTTAA 57.117 32.000 0.00 0.00 0.00 1.85
3066 3106 7.883391 TTGAACTGTTTTGGGTGTTATCTTA 57.117 32.000 0.00 0.00 0.00 2.10
3067 3107 6.783708 TTGAACTGTTTTGGGTGTTATCTT 57.216 33.333 0.00 0.00 0.00 2.40
3068 3108 6.976934 ATTGAACTGTTTTGGGTGTTATCT 57.023 33.333 0.00 0.00 0.00 1.98
3069 3109 7.708752 TGAAATTGAACTGTTTTGGGTGTTATC 59.291 33.333 0.00 0.00 0.00 1.75
3070 3110 7.560368 TGAAATTGAACTGTTTTGGGTGTTAT 58.440 30.769 0.00 0.00 0.00 1.89
3071 3111 6.936279 TGAAATTGAACTGTTTTGGGTGTTA 58.064 32.000 0.00 0.00 0.00 2.41
3072 3112 5.799213 TGAAATTGAACTGTTTTGGGTGTT 58.201 33.333 0.00 0.00 0.00 3.32
3073 3113 5.413309 TGAAATTGAACTGTTTTGGGTGT 57.587 34.783 0.00 0.00 0.00 4.16
3074 3114 4.270808 GCTGAAATTGAACTGTTTTGGGTG 59.729 41.667 0.00 0.00 0.00 4.61
3075 3115 4.162131 AGCTGAAATTGAACTGTTTTGGGT 59.838 37.500 0.00 0.00 0.00 4.51
3076 3116 4.508861 CAGCTGAAATTGAACTGTTTTGGG 59.491 41.667 8.42 0.00 0.00 4.12
3077 3117 5.111293 ACAGCTGAAATTGAACTGTTTTGG 58.889 37.500 23.35 0.00 38.38 3.28
3078 3118 6.038356 AGACAGCTGAAATTGAACTGTTTTG 58.962 36.000 23.35 0.00 41.45 2.44
3079 3119 6.212888 AGACAGCTGAAATTGAACTGTTTT 57.787 33.333 23.35 0.00 41.45 2.43
3080 3120 5.841957 AGACAGCTGAAATTGAACTGTTT 57.158 34.783 23.35 0.00 41.45 2.83
3081 3121 5.841957 AAGACAGCTGAAATTGAACTGTT 57.158 34.783 23.35 0.00 41.45 3.16
3082 3122 6.942532 TTAAGACAGCTGAAATTGAACTGT 57.057 33.333 23.35 0.00 43.93 3.55
3083 3123 6.358030 CGTTTAAGACAGCTGAAATTGAACTG 59.642 38.462 23.35 14.61 27.41 3.16
3084 3124 6.038271 ACGTTTAAGACAGCTGAAATTGAACT 59.962 34.615 23.35 10.82 27.41 3.01
3085 3125 6.199393 ACGTTTAAGACAGCTGAAATTGAAC 58.801 36.000 23.35 20.12 27.41 3.18
3086 3126 6.260050 AGACGTTTAAGACAGCTGAAATTGAA 59.740 34.615 23.35 11.43 27.41 2.69
3087 3127 5.758296 AGACGTTTAAGACAGCTGAAATTGA 59.242 36.000 23.35 5.74 27.41 2.57
3088 3128 5.990408 AGACGTTTAAGACAGCTGAAATTG 58.010 37.500 23.35 9.51 27.41 2.32
3089 3129 6.619801 AAGACGTTTAAGACAGCTGAAATT 57.380 33.333 23.35 13.76 27.41 1.82
3090 3130 6.704493 TGTAAGACGTTTAAGACAGCTGAAAT 59.296 34.615 23.35 7.92 27.41 2.17
3091 3131 6.044046 TGTAAGACGTTTAAGACAGCTGAAA 58.956 36.000 23.35 7.52 0.00 2.69
3092 3132 5.593968 TGTAAGACGTTTAAGACAGCTGAA 58.406 37.500 23.35 0.04 0.00 3.02
3093 3133 5.190992 TGTAAGACGTTTAAGACAGCTGA 57.809 39.130 23.35 0.00 0.00 4.26
3094 3134 5.900339 TTGTAAGACGTTTAAGACAGCTG 57.100 39.130 13.48 13.48 0.00 4.24
3095 3135 6.537660 ACTTTTGTAAGACGTTTAAGACAGCT 59.462 34.615 0.00 0.00 35.30 4.24
3096 3136 6.627671 CACTTTTGTAAGACGTTTAAGACAGC 59.372 38.462 0.00 0.00 35.30 4.40
3097 3137 7.902032 TCACTTTTGTAAGACGTTTAAGACAG 58.098 34.615 0.00 0.00 35.30 3.51
3098 3138 7.830940 TCACTTTTGTAAGACGTTTAAGACA 57.169 32.000 0.00 0.00 35.30 3.41
3099 3139 8.170553 TGTTCACTTTTGTAAGACGTTTAAGAC 58.829 33.333 0.00 0.00 35.30 3.01
3100 3140 8.254178 TGTTCACTTTTGTAAGACGTTTAAGA 57.746 30.769 0.00 0.00 35.30 2.10
3101 3141 8.385111 TCTGTTCACTTTTGTAAGACGTTTAAG 58.615 33.333 0.00 0.00 35.30 1.85
3102 3142 8.254178 TCTGTTCACTTTTGTAAGACGTTTAA 57.746 30.769 0.00 0.00 35.30 1.52
3103 3143 7.010738 CCTCTGTTCACTTTTGTAAGACGTTTA 59.989 37.037 0.00 0.00 35.30 2.01
3104 3144 6.183360 CCTCTGTTCACTTTTGTAAGACGTTT 60.183 38.462 0.00 0.00 35.30 3.60
3105 3145 5.293569 CCTCTGTTCACTTTTGTAAGACGTT 59.706 40.000 0.00 0.00 35.30 3.99
3106 3146 4.809426 CCTCTGTTCACTTTTGTAAGACGT 59.191 41.667 0.00 0.00 35.30 4.34
3107 3147 5.047847 TCCTCTGTTCACTTTTGTAAGACG 58.952 41.667 0.00 0.00 35.30 4.18
3108 3148 6.920569 TTCCTCTGTTCACTTTTGTAAGAC 57.079 37.500 0.00 0.00 35.30 3.01
3109 3149 8.429641 ACTATTCCTCTGTTCACTTTTGTAAGA 58.570 33.333 0.00 0.00 35.30 2.10
3110 3150 8.608844 ACTATTCCTCTGTTCACTTTTGTAAG 57.391 34.615 0.00 0.00 37.40 2.34
3113 3153 8.974060 TTTACTATTCCTCTGTTCACTTTTGT 57.026 30.769 0.00 0.00 0.00 2.83
3114 3154 9.057089 ACTTTACTATTCCTCTGTTCACTTTTG 57.943 33.333 0.00 0.00 0.00 2.44
3115 3155 9.628500 AACTTTACTATTCCTCTGTTCACTTTT 57.372 29.630 0.00 0.00 0.00 2.27
3116 3156 9.628500 AAACTTTACTATTCCTCTGTTCACTTT 57.372 29.630 0.00 0.00 0.00 2.66
3117 3157 9.057089 CAAACTTTACTATTCCTCTGTTCACTT 57.943 33.333 0.00 0.00 0.00 3.16
3118 3158 8.429641 TCAAACTTTACTATTCCTCTGTTCACT 58.570 33.333 0.00 0.00 0.00 3.41
3119 3159 8.496751 GTCAAACTTTACTATTCCTCTGTTCAC 58.503 37.037 0.00 0.00 0.00 3.18
3120 3160 8.429641 AGTCAAACTTTACTATTCCTCTGTTCA 58.570 33.333 0.00 0.00 0.00 3.18
3121 3161 8.713271 CAGTCAAACTTTACTATTCCTCTGTTC 58.287 37.037 0.00 0.00 0.00 3.18
3122 3162 8.429641 TCAGTCAAACTTTACTATTCCTCTGTT 58.570 33.333 0.00 0.00 0.00 3.16
3123 3163 7.963532 TCAGTCAAACTTTACTATTCCTCTGT 58.036 34.615 0.00 0.00 0.00 3.41
3124 3164 8.833231 TTCAGTCAAACTTTACTATTCCTCTG 57.167 34.615 0.00 0.00 0.00 3.35
3172 3212 6.757897 ATCAAAAGCGACAGGAAAATGATA 57.242 33.333 0.00 0.00 0.00 2.15
3174 3214 6.378582 GTTATCAAAAGCGACAGGAAAATGA 58.621 36.000 0.00 0.00 0.00 2.57
3422 3462 0.588252 CTGAGTGTGCAACCTTTCCG 59.412 55.000 0.00 0.00 34.36 4.30
3455 3495 1.548973 CTGCTTCGTTATAGCGGCGG 61.549 60.000 9.78 6.87 41.54 6.13
3491 3531 1.576356 ACTTATGCTCTAAGCTGCGC 58.424 50.000 0.00 0.00 42.97 6.09
3497 3537 7.067494 AGCACCCAAATAAACTTATGCTCTAAG 59.933 37.037 0.00 5.42 0.00 2.18
3536 3576 6.892658 ATCAGGTGCTAACATCTACTAGAG 57.107 41.667 0.00 0.00 33.94 2.43
3615 3655 5.220662 CCTGCAATTAGACCGACAATAACAG 60.221 44.000 0.00 0.00 0.00 3.16
3620 3660 3.627395 TCCTGCAATTAGACCGACAAT 57.373 42.857 0.00 0.00 0.00 2.71
3754 3794 5.277925 CGAATATCACATGCTTGCAATACCA 60.278 40.000 0.00 0.00 0.00 3.25
3954 3994 2.580783 CCAAAATAGGTTCCTCAGGGGA 59.419 50.000 0.00 0.00 43.41 4.81
4004 4044 9.062524 GGTGTTGTTGCATTATTAGATGGTATA 57.937 33.333 0.00 0.00 0.00 1.47
4148 4188 9.193133 CTTCTGAACGTATTTCTGACTTCTTTA 57.807 33.333 0.00 0.00 40.73 1.85
4297 4337 5.119898 CCTCATTCAACGAGAACAAGAAGAG 59.880 44.000 0.00 0.00 39.49 2.85
4299 4339 4.991056 TCCTCATTCAACGAGAACAAGAAG 59.009 41.667 0.00 0.00 39.49 2.85
4319 4359 4.640771 TTTACACAGCCATCTTCTTCCT 57.359 40.909 0.00 0.00 0.00 3.36
4620 4972 5.413499 CCAGCAAAGCAAAGCACTATATTT 58.587 37.500 0.00 0.00 0.00 1.40
4661 5095 4.507335 GGGGTGATGAATGTATACTGGCAT 60.507 45.833 4.17 4.75 0.00 4.40
4662 5096 3.181445 GGGGTGATGAATGTATACTGGCA 60.181 47.826 4.17 0.00 0.00 4.92
4663 5097 3.073062 AGGGGTGATGAATGTATACTGGC 59.927 47.826 4.17 0.00 0.00 4.85
4664 5098 4.982241 AGGGGTGATGAATGTATACTGG 57.018 45.455 4.17 0.00 0.00 4.00
4665 5099 6.918067 TCTAGGGGTGATGAATGTATACTG 57.082 41.667 4.17 0.00 0.00 2.74
4666 5100 9.206690 CATATCTAGGGGTGATGAATGTATACT 57.793 37.037 4.17 0.00 0.00 2.12
4667 5101 8.982723 ACATATCTAGGGGTGATGAATGTATAC 58.017 37.037 0.00 0.00 0.00 1.47
4682 5145 7.118971 GCAGCTAGATCAAAAACATATCTAGGG 59.881 40.741 16.33 0.00 44.84 3.53
4719 5182 5.106157 ACCTGCAGTTTCGAAGGATTAAATG 60.106 40.000 13.81 0.00 33.78 2.32
4743 5206 0.954938 TTGTGATTGCGCTGCTAGCA 60.955 50.000 18.22 18.22 42.58 3.49
4798 5261 3.485394 TGGCACAGAAGCAGTTGATTTA 58.515 40.909 0.00 0.00 35.83 1.40
4858 5321 4.065789 GCCCTTTAGTACATACCTGCATC 58.934 47.826 0.00 0.00 0.00 3.91
4871 5334 3.624959 GCCTAAGATGGTTGCCCTTTAGT 60.625 47.826 0.00 0.00 0.00 2.24
4895 5358 9.423061 GTTTGAAAATATACCAAAGATGTGCTT 57.577 29.630 0.00 0.00 38.88 3.91
4903 5366 7.923344 TGTGTGTGGTTTGAAAATATACCAAAG 59.077 33.333 0.00 0.00 41.95 2.77
4916 5379 9.040939 CGAGATATAAATATGTGTGTGGTTTGA 57.959 33.333 0.00 0.00 0.00 2.69
4919 5382 9.778741 AATCGAGATATAAATATGTGTGTGGTT 57.221 29.630 0.00 0.00 0.00 3.67
4946 5411 4.082190 TCTCGTTCCTCCTGATTAACAGTG 60.082 45.833 0.00 0.00 44.40 3.66
5093 5558 2.029815 TCGTTTGCCGCTGCTGTA 59.970 55.556 0.70 0.00 38.71 2.74
5135 5600 2.602676 TACCTTGCCTGCCAGGGAC 61.603 63.158 13.78 0.00 43.10 4.46
5243 5708 3.328382 TCTTGGTATGTTTCTCCACGG 57.672 47.619 0.00 0.00 0.00 4.94
5260 5725 6.894339 AAATCGAAGGTACCACAAAATCTT 57.106 33.333 15.94 0.00 0.00 2.40
5279 5744 4.023963 GCTCCGGGCTAGTTCATTAAAATC 60.024 45.833 0.00 0.00 38.06 2.17
5334 5800 0.806102 CTACCGGTTCAGATGGCGTG 60.806 60.000 15.04 0.00 0.00 5.34
5349 5815 3.397849 ACGGAGAACCAGAAAACTACC 57.602 47.619 0.00 0.00 35.59 3.18
5355 5821 2.037251 CCTCAGAACGGAGAACCAGAAA 59.963 50.000 3.75 0.00 37.05 2.52
5356 5822 1.618837 CCTCAGAACGGAGAACCAGAA 59.381 52.381 3.75 0.00 37.05 3.02
5358 5824 0.969894 ACCTCAGAACGGAGAACCAG 59.030 55.000 3.75 0.00 37.05 4.00
5360 5826 0.966920 TGACCTCAGAACGGAGAACC 59.033 55.000 3.75 0.00 37.05 3.62
5361 5827 1.340248 TGTGACCTCAGAACGGAGAAC 59.660 52.381 3.75 1.15 37.05 3.01
5363 5829 1.546029 CATGTGACCTCAGAACGGAGA 59.454 52.381 3.75 0.00 37.05 3.71
5364 5830 2.001812 CATGTGACCTCAGAACGGAG 57.998 55.000 0.00 0.00 34.62 4.63
5365 5831 0.037326 GCATGTGACCTCAGAACGGA 60.037 55.000 0.00 0.00 0.00 4.69
5366 5832 0.036952 AGCATGTGACCTCAGAACGG 60.037 55.000 0.00 0.00 0.00 4.44
5367 5833 1.354040 GAGCATGTGACCTCAGAACG 58.646 55.000 0.00 0.00 0.00 3.95
5387 5853 4.012895 CAGCAACCACGCACGACC 62.013 66.667 0.00 0.00 0.00 4.79
5435 5911 1.671742 CTAGTGTGTTCGGGGCTGT 59.328 57.895 0.00 0.00 0.00 4.40
5471 5947 2.597510 GCGTGAAAAGCAGGGGGT 60.598 61.111 0.00 0.00 42.41 4.95
5597 6073 2.830370 GCGCCAAAGGGGAGATGG 60.830 66.667 0.00 0.00 39.08 3.51
5602 6078 2.206536 CCTTTTGCGCCAAAGGGGA 61.207 57.895 34.39 3.95 43.76 4.81
5633 6109 1.690219 GCCGAGGACACCATGGATCT 61.690 60.000 21.47 9.59 0.00 2.75
5673 6149 2.045926 ACACGGAGAGGCCATTGC 60.046 61.111 5.01 0.00 35.94 3.56
5761 6237 1.439679 CCGATATAAAAGCTCCGGGC 58.560 55.000 0.00 3.80 42.19 6.13
5762 6238 1.439679 GCCGATATAAAAGCTCCGGG 58.560 55.000 0.00 0.00 37.62 5.73
5763 6239 1.068474 CGCCGATATAAAAGCTCCGG 58.932 55.000 0.00 0.00 39.88 5.14
5927 6435 4.742649 TCTGCCTCGGCTCCTCGT 62.743 66.667 9.65 0.00 42.51 4.18
6123 6631 2.591429 CCGCTGTGGTTGAGCACA 60.591 61.111 14.47 14.47 36.12 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.