Multiple sequence alignment - TraesCS2A01G397300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G397300 chr2A 100.000 6086 0 0 1 6086 651276399 651270314 0.000000e+00 11239
1 TraesCS2A01G397300 chr2A 85.897 156 14 4 4558 4713 12352543 12352690 6.310000e-35 159
2 TraesCS2A01G397300 chr2A 86.093 151 13 4 4561 4711 208543370 208543512 8.170000e-34 156
3 TraesCS2A01G397300 chr2A 89.623 106 11 0 1590 1695 651274758 651274653 1.060000e-27 135
4 TraesCS2A01G397300 chr2A 89.623 106 11 0 1642 1747 651274810 651274705 1.060000e-27 135
5 TraesCS2A01G397300 chr2D 95.395 2367 65 13 3089 5437 506516581 506514241 0.000000e+00 3727
6 TraesCS2A01G397300 chr2D 92.458 2347 112 32 786 3091 506518857 506516535 0.000000e+00 3293
7 TraesCS2A01G397300 chr2D 92.370 616 33 6 5482 6086 506513998 506513386 0.000000e+00 865
8 TraesCS2A01G397300 chr2D 86.275 153 13 4 4561 4713 271524192 271524336 6.310000e-35 159
9 TraesCS2A01G397300 chr2D 89.623 106 10 1 1591 1695 506517987 506517882 3.830000e-27 134
10 TraesCS2A01G397300 chr2B 95.101 2368 67 18 3089 5437 594174428 594172091 0.000000e+00 3685
11 TraesCS2A01G397300 chr2B 91.235 1894 88 29 973 2838 594176593 594174750 0.000000e+00 2507
12 TraesCS2A01G397300 chr2B 91.791 670 34 14 5432 6086 594171945 594171282 0.000000e+00 913
13 TraesCS2A01G397300 chr2B 95.238 252 9 2 2840 3091 594174631 594174383 4.420000e-106 396
14 TraesCS2A01G397300 chr2B 94.904 157 6 1 786 942 594176740 594176586 1.690000e-60 244
15 TraesCS2A01G397300 chr2B 91.176 102 7 1 1590 1689 594175938 594175837 2.960000e-28 137
16 TraesCS2A01G397300 chr4A 97.197 785 21 1 1 785 492534938 492535721 0.000000e+00 1327
17 TraesCS2A01G397300 chr1B 97.197 785 20 2 1 785 305299255 305298473 0.000000e+00 1327
18 TraesCS2A01G397300 chr3B 96.819 786 23 2 1 786 719915382 719914599 0.000000e+00 1312
19 TraesCS2A01G397300 chr4B 96.855 763 23 1 1 763 545150932 545150171 0.000000e+00 1275
20 TraesCS2A01G397300 chr7B 95.918 784 27 2 1 784 749318007 749318785 0.000000e+00 1266
21 TraesCS2A01G397300 chr5D 94.578 793 34 2 1 785 352452286 352451495 0.000000e+00 1218
22 TraesCS2A01G397300 chr5D 94.325 793 36 2 1 785 276932848 276932057 0.000000e+00 1206
23 TraesCS2A01G397300 chr5D 86.364 154 11 5 4560 4713 338524932 338525075 6.310000e-35 159
24 TraesCS2A01G397300 chr7D 93.821 793 40 2 1 785 335478267 335479058 0.000000e+00 1184
25 TraesCS2A01G397300 chr7D 93.317 793 42 4 1 785 118342306 118341517 0.000000e+00 1160
26 TraesCS2A01G397300 chr3D 93.657 741 38 2 53 785 609616068 609616807 0.000000e+00 1099
27 TraesCS2A01G397300 chr3D 94.170 446 18 1 1 438 15132516 15132961 0.000000e+00 673
28 TraesCS2A01G397300 chr3D 85.714 154 14 4 4560 4713 62183235 62183380 8.170000e-34 156
29 TraesCS2A01G397300 chr3D 75.862 261 48 12 5645 5903 604590843 604590596 1.070000e-22 119
30 TraesCS2A01G397300 chr6B 86.928 153 12 4 4561 4713 64137460 64137604 1.360000e-36 165
31 TraesCS2A01G397300 chr6A 86.093 151 13 4 4561 4711 297681394 297681536 8.170000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G397300 chr2A 651270314 651276399 6085 True 3836.333333 11239 93.082000 1 6086 3 chr2A.!!$R1 6085
1 TraesCS2A01G397300 chr2D 506513386 506518857 5471 True 2004.750000 3727 92.461500 786 6086 4 chr2D.!!$R1 5300
2 TraesCS2A01G397300 chr2B 594171282 594176740 5458 True 1313.666667 3685 93.240833 786 6086 6 chr2B.!!$R1 5300
3 TraesCS2A01G397300 chr4A 492534938 492535721 783 False 1327.000000 1327 97.197000 1 785 1 chr4A.!!$F1 784
4 TraesCS2A01G397300 chr1B 305298473 305299255 782 True 1327.000000 1327 97.197000 1 785 1 chr1B.!!$R1 784
5 TraesCS2A01G397300 chr3B 719914599 719915382 783 True 1312.000000 1312 96.819000 1 786 1 chr3B.!!$R1 785
6 TraesCS2A01G397300 chr4B 545150171 545150932 761 True 1275.000000 1275 96.855000 1 763 1 chr4B.!!$R1 762
7 TraesCS2A01G397300 chr7B 749318007 749318785 778 False 1266.000000 1266 95.918000 1 784 1 chr7B.!!$F1 783
8 TraesCS2A01G397300 chr5D 352451495 352452286 791 True 1218.000000 1218 94.578000 1 785 1 chr5D.!!$R2 784
9 TraesCS2A01G397300 chr5D 276932057 276932848 791 True 1206.000000 1206 94.325000 1 785 1 chr5D.!!$R1 784
10 TraesCS2A01G397300 chr7D 335478267 335479058 791 False 1184.000000 1184 93.821000 1 785 1 chr7D.!!$F1 784
11 TraesCS2A01G397300 chr7D 118341517 118342306 789 True 1160.000000 1160 93.317000 1 785 1 chr7D.!!$R1 784
12 TraesCS2A01G397300 chr3D 609616068 609616807 739 False 1099.000000 1099 93.657000 53 785 1 chr3D.!!$F3 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 241 0.318360 CGGCAAGACACGAGTACACA 60.318 55.000 0.00 0.0 0.00 3.72 F
1279 1327 0.107312 CTGCCTCAATCTCCAGTGGG 60.107 60.000 9.92 0.0 0.00 4.61 F
1309 1357 1.057822 CACGATCGCAACGCTTGAG 59.942 57.895 16.60 0.0 0.00 3.02 F
1310 1358 2.020559 CGATCGCAACGCTTGAGC 59.979 61.111 0.26 0.0 37.78 4.26 F
3064 3267 3.670055 GCAACAATTTGGATTGACTGACG 59.330 43.478 6.17 0.0 44.37 4.35 F
3140 3343 0.461870 CTGCAGCTATTACACGGCCA 60.462 55.000 2.24 0.0 0.00 5.36 F
4545 4763 0.550914 TGCCTTCACTCCAACTTGGT 59.449 50.000 7.72 0.0 39.03 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 1826 0.172578 GACCAGGGGCATTTTTACGC 59.827 55.000 0.00 0.00 0.00 4.42 R
2375 2461 0.387239 GGCAACAGCGGTGTCATTTC 60.387 55.000 22.12 8.22 35.08 2.17 R
3013 3216 3.066342 AGGAAAGAGCAATGCAATGATCG 59.934 43.478 13.96 0.00 40.55 3.69 R
3139 3342 3.067461 AGCTAGCGAGAGATAAAGGTGTG 59.933 47.826 9.55 0.00 0.00 3.82 R
4547 4765 0.242825 TCTAACACTCGGCAGTTCGG 59.757 55.000 0.00 0.00 0.00 4.30 R
4548 4766 2.060326 TTCTAACACTCGGCAGTTCG 57.940 50.000 0.00 0.00 0.00 3.95 R
5654 6111 0.037697 ATCTCCACTTTGCACGCGTA 60.038 50.000 13.44 0.00 0.00 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
232 241 0.318360 CGGCAAGACACGAGTACACA 60.318 55.000 0.00 0.00 0.00 3.72
249 258 3.011119 ACACAACGTAAAGCACCTTGAA 58.989 40.909 0.00 0.00 30.41 2.69
342 351 1.153086 CACACATGCTAGGGAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
499 508 3.207669 GGCTGCTTGGCCGAGATG 61.208 66.667 25.25 15.39 42.82 2.90
588 597 1.134189 TCGGACTTCGCTGATCTCCTA 60.134 52.381 0.00 0.00 39.05 2.94
874 883 2.611518 CCTTTCGATTCGCACTCTCTT 58.388 47.619 0.00 0.00 0.00 2.85
896 931 2.699496 CCTCCCTCCTAGTGCCCT 59.301 66.667 0.00 0.00 0.00 5.19
938 973 4.063967 CGCGTACCAGCACAGGGA 62.064 66.667 0.00 0.00 36.85 4.20
939 974 2.125512 GCGTACCAGCACAGGGAG 60.126 66.667 0.00 0.00 37.05 4.30
940 975 2.646175 GCGTACCAGCACAGGGAGA 61.646 63.158 0.00 0.00 37.05 3.71
941 976 1.513158 CGTACCAGCACAGGGAGAG 59.487 63.158 0.00 0.00 0.00 3.20
942 977 0.965866 CGTACCAGCACAGGGAGAGA 60.966 60.000 0.00 0.00 0.00 3.10
943 978 0.820871 GTACCAGCACAGGGAGAGAG 59.179 60.000 0.00 0.00 0.00 3.20
944 979 0.324738 TACCAGCACAGGGAGAGAGG 60.325 60.000 0.00 0.00 0.00 3.69
945 980 2.365586 CCAGCACAGGGAGAGAGGG 61.366 68.421 0.00 0.00 0.00 4.30
946 981 1.305633 CAGCACAGGGAGAGAGGGA 60.306 63.158 0.00 0.00 0.00 4.20
947 982 1.001503 AGCACAGGGAGAGAGGGAG 59.998 63.158 0.00 0.00 0.00 4.30
948 983 1.000993 GCACAGGGAGAGAGGGAGA 59.999 63.158 0.00 0.00 0.00 3.71
949 984 1.042559 GCACAGGGAGAGAGGGAGAG 61.043 65.000 0.00 0.00 0.00 3.20
950 985 0.628522 CACAGGGAGAGAGGGAGAGA 59.371 60.000 0.00 0.00 0.00 3.10
951 986 0.926293 ACAGGGAGAGAGGGAGAGAG 59.074 60.000 0.00 0.00 0.00 3.20
952 987 1.221635 CAGGGAGAGAGGGAGAGAGA 58.778 60.000 0.00 0.00 0.00 3.10
953 988 1.143684 CAGGGAGAGAGGGAGAGAGAG 59.856 61.905 0.00 0.00 0.00 3.20
954 989 1.010793 AGGGAGAGAGGGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
955 990 1.421646 GGGAGAGAGGGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
956 991 2.408565 GGAGAGAGGGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
957 992 2.370189 GGAGAGAGGGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
958 993 3.309296 GAGAGAGGGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
959 994 3.312890 AGAGAGGGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
960 995 3.051803 AGAGAGGGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
961 996 3.312890 AGAGGGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
962 997 3.051803 AGAGGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
963 998 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
964 999 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
965 1000 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
966 1001 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
1225 1272 1.341852 GGTTCCCGCTTTGCCTTTTTA 59.658 47.619 0.00 0.00 0.00 1.52
1226 1273 2.609491 GGTTCCCGCTTTGCCTTTTTAG 60.609 50.000 0.00 0.00 0.00 1.85
1227 1274 2.279935 TCCCGCTTTGCCTTTTTAGA 57.720 45.000 0.00 0.00 0.00 2.10
1228 1275 1.883926 TCCCGCTTTGCCTTTTTAGAC 59.116 47.619 0.00 0.00 0.00 2.59
1236 1283 5.738783 GCTTTGCCTTTTTAGACATGTTCCA 60.739 40.000 0.00 0.00 0.00 3.53
1248 1295 2.025887 ACATGTTCCAACTCATCTCCCC 60.026 50.000 0.00 0.00 0.00 4.81
1269 1316 2.754658 GCTGCAGCCTGCCTCAAT 60.755 61.111 28.76 0.00 44.23 2.57
1273 1320 1.823041 GCAGCCTGCCTCAATCTCC 60.823 63.158 5.06 0.00 37.42 3.71
1279 1327 0.107312 CTGCCTCAATCTCCAGTGGG 60.107 60.000 9.92 0.00 0.00 4.61
1282 1330 1.225704 CTCAATCTCCAGTGGGCCC 59.774 63.158 17.59 17.59 0.00 5.80
1307 1355 2.571611 GCACGATCGCAACGCTTG 60.572 61.111 16.60 5.07 0.00 4.01
1309 1357 1.057822 CACGATCGCAACGCTTGAG 59.942 57.895 16.60 0.00 0.00 3.02
1310 1358 2.020559 CGATCGCAACGCTTGAGC 59.979 61.111 0.26 0.00 37.78 4.26
1353 1409 5.705441 AGCTGTCCGTTCTGAAATTTTGATA 59.295 36.000 0.00 0.00 0.00 2.15
1394 1450 9.343539 GTTAGGGAAAGCATTAGATGAGTAATT 57.656 33.333 0.00 0.00 0.00 1.40
1395 1451 7.814264 AGGGAAAGCATTAGATGAGTAATTG 57.186 36.000 0.00 0.00 0.00 2.32
1470 1527 7.792048 CGTTATAAAAAGCAAAAGAGGCAAAAC 59.208 33.333 0.00 0.00 0.00 2.43
1472 1529 5.956068 AAAAAGCAAAAGAGGCAAAACAA 57.044 30.435 0.00 0.00 0.00 2.83
1521 1588 4.729868 AGTTCTGTGTAGCCTTTTCCATT 58.270 39.130 0.00 0.00 0.00 3.16
1674 1748 3.961408 TGGTAGATTAGAAGCTCCTGTCC 59.039 47.826 0.00 0.00 0.00 4.02
1721 1795 6.574350 AGATTGTGGGTAGATTAGAAACTCG 58.426 40.000 0.00 0.00 0.00 4.18
1793 1868 8.418662 GGTCCACTAAAATTCCTTTTGTTACTT 58.581 33.333 0.00 0.00 36.09 2.24
1806 1881 6.463897 CCTTTTGTTACTTACTGGGAGTGAGA 60.464 42.308 2.79 0.00 35.61 3.27
1912 1992 4.762765 ACCTATGTTGCGTCCATTTTTACA 59.237 37.500 0.00 0.00 0.00 2.41
1914 1994 5.799936 CCTATGTTGCGTCCATTTTTACAAG 59.200 40.000 0.00 0.00 0.00 3.16
1923 2003 5.977129 CGTCCATTTTTACAAGTCTTTGCTT 59.023 36.000 0.00 0.00 37.85 3.91
2522 2608 3.919197 GCGGACTGTCTTTGTACTTCTAC 59.081 47.826 7.85 0.00 0.00 2.59
2654 2740 7.007723 AGTTCCACATTGGTTAACTTCCATTA 58.992 34.615 5.42 0.00 39.03 1.90
2671 2757 6.603237 TCCATTATGTTCTAGAATGTTGCG 57.397 37.500 8.75 0.00 36.49 4.85
2881 3084 5.940470 AGTTTACTGGATGATTTGACCACTC 59.060 40.000 0.00 0.00 0.00 3.51
2898 3101 7.833786 TGACCACTCGTAATTGTAGTTCTAAT 58.166 34.615 0.00 0.00 0.00 1.73
2982 3185 8.911662 TCTTTGATTTCTTGCTTTTTATAACGC 58.088 29.630 0.00 0.00 0.00 4.84
2983 3186 8.810652 TTTGATTTCTTGCTTTTTATAACGCT 57.189 26.923 0.00 0.00 30.42 5.07
3013 3216 5.646606 TCAGTAAAGGTTTCTTTGCACAAC 58.353 37.500 9.01 0.00 44.50 3.32
3054 3257 5.350504 TCCTTTTTCTGCAACAATTTGGA 57.649 34.783 0.78 0.00 32.81 3.53
3055 3258 5.927819 TCCTTTTTCTGCAACAATTTGGAT 58.072 33.333 0.78 0.00 31.84 3.41
3056 3259 6.355747 TCCTTTTTCTGCAACAATTTGGATT 58.644 32.000 0.78 0.00 31.84 3.01
3057 3260 6.260493 TCCTTTTTCTGCAACAATTTGGATTG 59.740 34.615 0.78 0.00 46.47 2.67
3058 3261 6.260493 CCTTTTTCTGCAACAATTTGGATTGA 59.740 34.615 6.17 0.00 44.37 2.57
3059 3262 6.601741 TTTTCTGCAACAATTTGGATTGAC 57.398 33.333 6.17 0.00 44.37 3.18
3060 3263 5.534207 TTCTGCAACAATTTGGATTGACT 57.466 34.783 6.17 0.00 44.37 3.41
3061 3264 4.873817 TCTGCAACAATTTGGATTGACTG 58.126 39.130 6.17 4.52 44.37 3.51
3062 3265 4.583907 TCTGCAACAATTTGGATTGACTGA 59.416 37.500 6.17 2.11 44.37 3.41
3063 3266 4.619973 TGCAACAATTTGGATTGACTGAC 58.380 39.130 6.17 1.97 44.37 3.51
3064 3267 3.670055 GCAACAATTTGGATTGACTGACG 59.330 43.478 6.17 0.00 44.37 4.35
3065 3268 4.556501 GCAACAATTTGGATTGACTGACGA 60.557 41.667 6.17 0.00 44.37 4.20
3066 3269 5.702865 CAACAATTTGGATTGACTGACGAT 58.297 37.500 6.17 0.00 44.37 3.73
3067 3270 5.964958 ACAATTTGGATTGACTGACGATT 57.035 34.783 6.17 0.00 44.37 3.34
3068 3271 7.304735 CAACAATTTGGATTGACTGACGATTA 58.695 34.615 6.17 0.00 44.37 1.75
3069 3272 7.630242 ACAATTTGGATTGACTGACGATTAT 57.370 32.000 6.17 0.00 44.37 1.28
3070 3273 8.055279 ACAATTTGGATTGACTGACGATTATT 57.945 30.769 6.17 0.00 44.37 1.40
3071 3274 8.522830 ACAATTTGGATTGACTGACGATTATTT 58.477 29.630 6.17 0.00 44.37 1.40
3072 3275 9.357652 CAATTTGGATTGACTGACGATTATTTT 57.642 29.630 0.00 0.00 44.37 1.82
3073 3276 9.927668 AATTTGGATTGACTGACGATTATTTTT 57.072 25.926 0.00 0.00 0.00 1.94
3095 3298 7.887996 TTTTTCCTGCAGCTATTACAATTTG 57.112 32.000 8.66 0.00 0.00 2.32
3096 3299 5.581126 TTCCTGCAGCTATTACAATTTGG 57.419 39.130 8.66 0.00 0.00 3.28
3139 3342 1.160329 CCTGCAGCTATTACACGGCC 61.160 60.000 8.66 0.00 0.00 6.13
3140 3343 0.461870 CTGCAGCTATTACACGGCCA 60.462 55.000 2.24 0.00 0.00 5.36
3321 3524 7.984050 CCAGTGGATAGGTGCTATTATATTCAG 59.016 40.741 1.68 0.00 0.00 3.02
3439 3642 5.192927 AGTTGGTTTCTTGTCTGAATGTGA 58.807 37.500 0.00 0.00 0.00 3.58
3478 3681 1.782569 CGAGTTGCAGCACAAATGTTG 59.217 47.619 2.55 0.00 40.82 3.33
3518 3721 6.312918 TGCCGATGTATTGAGACTTAAAGTTC 59.687 38.462 0.00 0.00 0.00 3.01
3519 3722 6.508088 GCCGATGTATTGAGACTTAAAGTTCG 60.508 42.308 0.00 0.00 0.00 3.95
3520 3723 6.750501 CCGATGTATTGAGACTTAAAGTTCGA 59.249 38.462 0.00 0.00 0.00 3.71
3521 3724 7.253684 CCGATGTATTGAGACTTAAAGTTCGAC 60.254 40.741 0.00 0.00 0.00 4.20
3522 3725 7.485277 CGATGTATTGAGACTTAAAGTTCGACT 59.515 37.037 0.00 0.00 0.00 4.18
3523 3726 9.141400 GATGTATTGAGACTTAAAGTTCGACTT 57.859 33.333 0.00 0.00 40.80 3.01
3524 3727 8.516811 TGTATTGAGACTTAAAGTTCGACTTC 57.483 34.615 0.00 0.00 37.47 3.01
3558 3761 2.503895 ACCTGCTTCCTGAAATCCTG 57.496 50.000 0.00 0.00 0.00 3.86
3580 3783 6.878923 CCTGTAGTTATGTCTTGTTGGAATCA 59.121 38.462 0.00 0.00 0.00 2.57
3625 3828 5.538053 TGGAGTGGAATTCATTTTGCAGTAA 59.462 36.000 7.93 0.00 31.63 2.24
4058 4261 4.219070 GCTATTTGATGAATATGGCTGGCA 59.781 41.667 6.31 6.31 30.10 4.92
4365 4570 6.498304 CAGAGTGGCATTTGACCATATAAAC 58.502 40.000 0.00 0.00 39.95 2.01
4459 4664 8.882704 ATATTATATCATGGGGAGAGTTCCAT 57.117 34.615 0.00 0.00 45.98 3.41
4542 4760 2.031870 GGTTTGCCTTCACTCCAACTT 58.968 47.619 0.00 0.00 0.00 2.66
4545 4763 0.550914 TGCCTTCACTCCAACTTGGT 59.449 50.000 7.72 0.00 39.03 3.67
4546 4764 0.954452 GCCTTCACTCCAACTTGGTG 59.046 55.000 7.72 7.93 39.03 4.17
4547 4765 0.954452 CCTTCACTCCAACTTGGTGC 59.046 55.000 7.72 0.00 39.03 5.01
4548 4766 0.954452 CTTCACTCCAACTTGGTGCC 59.046 55.000 7.72 0.00 39.03 5.01
4549 4767 0.817634 TTCACTCCAACTTGGTGCCG 60.818 55.000 7.72 1.37 39.03 5.69
4550 4768 1.227823 CACTCCAACTTGGTGCCGA 60.228 57.895 7.72 0.00 39.03 5.54
4551 4769 0.817634 CACTCCAACTTGGTGCCGAA 60.818 55.000 7.72 0.00 39.03 4.30
4552 4770 0.818040 ACTCCAACTTGGTGCCGAAC 60.818 55.000 7.72 0.00 39.03 3.95
4615 4833 3.623203 GCCATAGGCCAGTATATGTGCAT 60.623 47.826 5.01 0.00 44.06 3.96
4616 4834 3.943381 CCATAGGCCAGTATATGTGCATG 59.057 47.826 5.01 0.00 0.00 4.06
4617 4835 4.566278 CCATAGGCCAGTATATGTGCATGT 60.566 45.833 5.01 0.00 0.00 3.21
4618 4836 5.338300 CCATAGGCCAGTATATGTGCATGTA 60.338 44.000 5.01 0.00 0.00 2.29
4619 4837 4.008074 AGGCCAGTATATGTGCATGTAC 57.992 45.455 5.01 7.03 36.16 2.90
4620 4838 3.390967 AGGCCAGTATATGTGCATGTACA 59.609 43.478 19.24 19.24 37.71 2.90
4621 4839 4.133820 GGCCAGTATATGTGCATGTACAA 58.866 43.478 20.75 10.44 37.71 2.41
4622 4840 4.024048 GGCCAGTATATGTGCATGTACAAC 60.024 45.833 20.75 14.06 37.71 3.32
4641 4859 4.036734 ACAACTGTACAAGTGCAGGAAATG 59.963 41.667 19.81 14.86 45.71 2.32
4692 4913 8.610035 GGTAAATACAAAAGGCTACATGACTAC 58.390 37.037 0.00 0.00 30.64 2.73
4721 4942 2.621998 GGACTATAACACCGAGCAGCTA 59.378 50.000 0.00 0.00 0.00 3.32
4829 5051 3.682718 GCATGTTGATAGCTAGTGGTGGT 60.683 47.826 0.00 0.00 0.00 4.16
4967 5189 8.668510 TCTATCATTCCAGCTGATTAAACTTC 57.331 34.615 17.39 0.00 35.12 3.01
5064 5286 3.916544 CCCCGCTCTCGCTATGCA 61.917 66.667 0.00 0.00 0.00 3.96
5134 5356 3.996150 AAAATCTGTGTGTTCTGGCTG 57.004 42.857 0.00 0.00 0.00 4.85
5152 5374 4.481112 GAATGCACAAGCCCGGCG 62.481 66.667 3.05 0.00 41.13 6.46
5219 5441 5.159925 TGTTGTGTTGTGTGACTTGAAATG 58.840 37.500 0.00 0.00 0.00 2.32
5382 5609 8.718102 TTTGACAACTAGGCTGATATAAGTTC 57.282 34.615 0.00 0.00 0.00 3.01
5499 5947 0.107263 TGTGTGTGTGTGTGGCTCAT 60.107 50.000 0.00 0.00 0.00 2.90
5572 6020 6.560253 TTAAAAGAATGGAGACTTGCAGTC 57.440 37.500 7.88 7.88 45.38 3.51
5607 6057 1.032014 TTGGTGTTTCTGCTGCTTCC 58.968 50.000 0.00 0.00 0.00 3.46
5623 6079 3.289834 CCTGCAGTGTGTGTGGCC 61.290 66.667 13.81 0.00 0.00 5.36
5654 6111 1.905215 CAGGTCTGGGACTGAATGTCT 59.095 52.381 0.00 0.00 44.74 3.41
5656 6113 3.100671 AGGTCTGGGACTGAATGTCTAC 58.899 50.000 0.00 0.00 44.74 2.59
5731 6188 8.560374 CCTTTGTTTTTGTTTAAAGAACACCAA 58.440 29.630 0.00 0.00 33.18 3.67
5806 6263 1.652124 CGAATGAGTGCAATTTGCTGC 59.348 47.619 21.19 13.98 45.31 5.25
5905 6363 2.572104 AGGGTTCAGAGAGCCGTTTAAT 59.428 45.455 0.00 0.00 42.00 1.40
5913 6376 5.408604 TCAGAGAGCCGTTTAATCTGAAAAC 59.591 40.000 0.92 0.00 42.43 2.43
5966 6429 2.048603 GCACACTCCAGGCCAATCC 61.049 63.158 5.01 0.00 0.00 3.01
5994 6457 4.192317 CCTAAAGTCAAGCCACTCATACC 58.808 47.826 0.00 0.00 0.00 2.73
6054 6526 8.644374 AGTATAGGGAGATATCTGAAGAACAC 57.356 38.462 10.74 0.00 0.00 3.32
6071 6543 5.050490 AGAACACACACACTGAAGTCATAC 58.950 41.667 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 129 4.363990 CACGACCAGGCGAGCAGT 62.364 66.667 0.00 0.00 34.83 4.40
132 141 2.717809 GAACGAAGCCGAGCACGAC 61.718 63.158 4.70 0.00 42.66 4.34
232 241 5.473504 AGAATCATTCAAGGTGCTTTACGTT 59.526 36.000 0.00 0.00 37.85 3.99
427 436 2.124193 CCTCCATGGCGGATGCAA 60.124 61.111 16.30 0.00 45.19 4.08
499 508 1.281656 CAAAAGACGTCGGTTGCCC 59.718 57.895 17.51 0.00 0.00 5.36
505 514 0.661020 ACAAAGCCAAAAGACGTCGG 59.339 50.000 10.46 6.37 0.00 4.79
588 597 5.636837 ACAAACGCGTTTTCTATATGCATT 58.363 33.333 33.05 6.31 0.00 3.56
874 883 1.950748 GCACTAGGAGGGAGGGAGGA 61.951 65.000 0.00 0.00 0.00 3.71
934 969 1.010793 TCTCTCTCTCCCTCTCTCCCT 59.989 57.143 0.00 0.00 0.00 4.20
935 970 1.421646 CTCTCTCTCTCCCTCTCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
936 971 2.370189 CTCTCTCTCTCTCCCTCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
937 972 3.309296 TCTCTCTCTCTCTCCCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
938 973 3.051803 TCTCTCTCTCTCTCTCCCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
939 974 3.309296 TCTCTCTCTCTCTCTCCCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
940 975 3.051803 TCTCTCTCTCTCTCTCTCCCTCT 60.052 52.174 0.00 0.00 0.00 3.69
941 976 3.309296 TCTCTCTCTCTCTCTCTCCCTC 58.691 54.545 0.00 0.00 0.00 4.30
942 977 3.051803 TCTCTCTCTCTCTCTCTCTCCCT 60.052 52.174 0.00 0.00 0.00 4.20
943 978 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
944 979 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
945 980 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
946 981 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
947 982 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
948 983 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
949 984 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
950 985 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
951 986 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
952 987 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
953 988 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
954 989 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
955 990 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
956 991 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
957 992 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
958 993 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
959 994 3.551863 CGCTCTCTCTCTCTCTCTCTCTC 60.552 56.522 0.00 0.00 0.00 3.20
960 995 2.363680 CGCTCTCTCTCTCTCTCTCTCT 59.636 54.545 0.00 0.00 0.00 3.10
961 996 2.362397 TCGCTCTCTCTCTCTCTCTCTC 59.638 54.545 0.00 0.00 0.00 3.20
962 997 2.388735 TCGCTCTCTCTCTCTCTCTCT 58.611 52.381 0.00 0.00 0.00 3.10
963 998 2.866762 GTTCGCTCTCTCTCTCTCTCTC 59.133 54.545 0.00 0.00 0.00 3.20
964 999 2.738643 CGTTCGCTCTCTCTCTCTCTCT 60.739 54.545 0.00 0.00 0.00 3.10
965 1000 1.593006 CGTTCGCTCTCTCTCTCTCTC 59.407 57.143 0.00 0.00 0.00 3.20
966 1001 1.651987 CGTTCGCTCTCTCTCTCTCT 58.348 55.000 0.00 0.00 0.00 3.10
1225 1272 3.054802 GGGAGATGAGTTGGAACATGTCT 60.055 47.826 0.00 0.00 39.30 3.41
1226 1273 3.274288 GGGAGATGAGTTGGAACATGTC 58.726 50.000 0.00 0.00 39.30 3.06
1227 1274 2.025887 GGGGAGATGAGTTGGAACATGT 60.026 50.000 0.00 0.00 39.30 3.21
1228 1275 2.240667 AGGGGAGATGAGTTGGAACATG 59.759 50.000 0.00 0.00 39.30 3.21
1236 1283 1.799933 CAGCCTAGGGGAGATGAGTT 58.200 55.000 11.72 0.00 33.58 3.01
1273 1320 4.722700 CCGAACCAGGGCCCACTG 62.723 72.222 27.56 15.06 38.21 3.66
1282 1330 3.554692 GCGATCGTGCCGAACCAG 61.555 66.667 17.81 0.00 39.99 4.00
1303 1351 0.244721 AGCCCAAAATTCGCTCAAGC 59.755 50.000 0.00 0.00 37.78 4.01
1307 1355 1.472480 TGCTAAGCCCAAAATTCGCTC 59.528 47.619 0.00 0.00 30.92 5.03
1309 1357 2.362169 TTGCTAAGCCCAAAATTCGC 57.638 45.000 0.00 0.00 0.00 4.70
1332 1388 6.869315 TGTATCAAAATTTCAGAACGGACA 57.131 33.333 0.00 0.00 0.00 4.02
1336 1392 7.326789 AGCACATTGTATCAAAATTTCAGAACG 59.673 33.333 0.00 0.00 0.00 3.95
1353 1409 3.780294 TCCCTAACCAGATAGCACATTGT 59.220 43.478 0.00 0.00 0.00 2.71
1470 1527 4.794762 CGTGGATTGATAACACTGCAATTG 59.205 41.667 0.00 0.00 32.80 2.32
1472 1529 4.260985 TCGTGGATTGATAACACTGCAAT 58.739 39.130 0.00 0.00 35.14 3.56
1505 1563 4.546570 GTTGTCAATGGAAAAGGCTACAC 58.453 43.478 0.00 0.00 0.00 2.90
1541 1612 7.678947 ACATTGTATCAAAGTCTTCAAGAGG 57.321 36.000 0.00 0.00 0.00 3.69
1652 1724 3.961408 GGACAGGAGCTTCTAATCTACCA 59.039 47.826 0.00 0.00 0.00 3.25
1743 1818 6.397977 AGGGGCATTTTTACGCCTAGTTCT 62.398 45.833 0.00 0.00 46.46 3.01
1747 1822 1.676006 CAGGGGCATTTTTACGCCTAG 59.324 52.381 0.00 0.00 46.59 3.02
1751 1826 0.172578 GACCAGGGGCATTTTTACGC 59.827 55.000 0.00 0.00 0.00 4.42
1793 1868 2.158370 TGAACCTGTCTCACTCCCAGTA 60.158 50.000 0.00 0.00 0.00 2.74
1869 1949 4.946157 AGGTTAGCTTCACAATCATCCAAG 59.054 41.667 0.00 0.00 0.00 3.61
2375 2461 0.387239 GGCAACAGCGGTGTCATTTC 60.387 55.000 22.12 8.22 35.08 2.17
2522 2608 3.349927 TCAGCACCTGAATTTCCATCAG 58.650 45.455 0.00 0.00 43.15 2.90
2654 2740 5.932303 ACAACTACGCAACATTCTAGAACAT 59.068 36.000 7.48 0.00 0.00 2.71
2671 2757 8.649973 AGTCAAGCTAGCATATTAACAACTAC 57.350 34.615 18.83 0.00 0.00 2.73
2825 2911 6.171213 GCCTTAACTTACACCATCTACTTGT 58.829 40.000 0.00 0.00 0.00 3.16
2982 3185 6.944234 AAGAAACCTTTACTGAAAGACCAG 57.056 37.500 0.00 0.00 44.23 4.00
2983 3186 6.405397 GCAAAGAAACCTTTACTGAAAGACCA 60.405 38.462 0.00 0.00 44.23 4.02
3013 3216 3.066342 AGGAAAGAGCAATGCAATGATCG 59.934 43.478 13.96 0.00 40.55 3.69
3071 3274 6.873076 CCAAATTGTAATAGCTGCAGGAAAAA 59.127 34.615 17.12 0.00 0.00 1.94
3072 3275 6.210385 TCCAAATTGTAATAGCTGCAGGAAAA 59.790 34.615 17.12 0.00 0.00 2.29
3073 3276 5.714333 TCCAAATTGTAATAGCTGCAGGAAA 59.286 36.000 17.12 0.00 0.00 3.13
3074 3277 5.260424 TCCAAATTGTAATAGCTGCAGGAA 58.740 37.500 17.12 0.00 0.00 3.36
3075 3278 4.854173 TCCAAATTGTAATAGCTGCAGGA 58.146 39.130 17.12 0.00 0.00 3.86
3076 3279 5.779529 ATCCAAATTGTAATAGCTGCAGG 57.220 39.130 17.12 0.00 0.00 4.85
3077 3280 6.694411 GTCAATCCAAATTGTAATAGCTGCAG 59.306 38.462 10.11 10.11 42.46 4.41
3078 3281 6.377996 AGTCAATCCAAATTGTAATAGCTGCA 59.622 34.615 1.02 0.00 42.46 4.41
3079 3282 6.799512 AGTCAATCCAAATTGTAATAGCTGC 58.200 36.000 0.00 0.00 42.46 5.25
3080 3283 9.722056 GTAAGTCAATCCAAATTGTAATAGCTG 57.278 33.333 0.00 0.00 42.46 4.24
3081 3284 9.461312 TGTAAGTCAATCCAAATTGTAATAGCT 57.539 29.630 0.00 0.00 42.46 3.32
3114 3317 4.096382 CCGTGTAATAGCTGCAGGAAAAAT 59.904 41.667 17.12 0.00 0.00 1.82
3139 3342 3.067461 AGCTAGCGAGAGATAAAGGTGTG 59.933 47.826 9.55 0.00 0.00 3.82
3140 3343 3.292460 AGCTAGCGAGAGATAAAGGTGT 58.708 45.455 9.55 0.00 0.00 4.16
3439 3642 6.494893 ACTCGCATATGTAAACATGTTGTT 57.505 33.333 12.82 0.00 43.41 2.83
3478 3681 1.196808 TCGGCAGATGCTTCGTTTTTC 59.803 47.619 4.59 0.00 41.70 2.29
3518 3721 5.570589 AGGTTTTATTAGTCGTTCGAAGTCG 59.429 40.000 0.00 0.00 41.45 4.18
3519 3722 6.669268 GCAGGTTTTATTAGTCGTTCGAAGTC 60.669 42.308 0.00 0.00 0.00 3.01
3520 3723 5.119743 GCAGGTTTTATTAGTCGTTCGAAGT 59.880 40.000 0.00 0.00 0.00 3.01
3521 3724 5.347907 AGCAGGTTTTATTAGTCGTTCGAAG 59.652 40.000 0.00 0.00 0.00 3.79
3522 3725 5.232463 AGCAGGTTTTATTAGTCGTTCGAA 58.768 37.500 0.00 0.00 0.00 3.71
3523 3726 4.813027 AGCAGGTTTTATTAGTCGTTCGA 58.187 39.130 0.00 0.00 0.00 3.71
3524 3727 5.445540 GGAAGCAGGTTTTATTAGTCGTTCG 60.446 44.000 0.00 0.00 0.00 3.95
3580 3783 9.247861 ACTCCATCAAATCTAAAGTAGCAAAAT 57.752 29.630 0.00 0.00 0.00 1.82
3871 4074 7.768120 TGTCAAAATGGTAAACAGAAAGCAATT 59.232 29.630 0.00 0.00 0.00 2.32
3963 4166 2.578021 AGGTAATGAGGGCAAGACACAT 59.422 45.455 0.00 0.00 0.00 3.21
4044 4247 2.290832 TGTCAGTTGCCAGCCATATTCA 60.291 45.455 0.00 0.00 0.00 2.57
4058 4261 4.610945 GCATTGTAAAAGCACTGTCAGTT 58.389 39.130 1.67 0.00 40.84 3.16
4365 4570 2.896685 CTGCCTACTCCTCTATGGGAAG 59.103 54.545 0.00 0.00 34.66 3.46
4459 4664 7.822334 CACTTACTCAACAACAGTGGGATAATA 59.178 37.037 0.00 0.00 32.74 0.98
4510 4715 3.801114 AGGCAAACCACAGAAAAGAAC 57.199 42.857 0.00 0.00 39.06 3.01
4542 4760 4.680237 CTCGGCAGTTCGGCACCA 62.680 66.667 0.00 0.00 41.26 4.17
4545 4763 2.089887 TAACACTCGGCAGTTCGGCA 62.090 55.000 0.00 0.00 41.26 5.69
4546 4764 1.352156 CTAACACTCGGCAGTTCGGC 61.352 60.000 0.00 0.00 0.00 5.54
4547 4765 0.242825 TCTAACACTCGGCAGTTCGG 59.757 55.000 0.00 0.00 0.00 4.30
4548 4766 2.060326 TTCTAACACTCGGCAGTTCG 57.940 50.000 0.00 0.00 0.00 3.95
4549 4767 6.478588 CATATTTTCTAACACTCGGCAGTTC 58.521 40.000 0.00 0.00 0.00 3.01
4550 4768 5.163754 GCATATTTTCTAACACTCGGCAGTT 60.164 40.000 0.00 0.00 0.00 3.16
4551 4769 4.332819 GCATATTTTCTAACACTCGGCAGT 59.667 41.667 0.00 0.00 0.00 4.40
4552 4770 4.332543 TGCATATTTTCTAACACTCGGCAG 59.667 41.667 0.00 0.00 0.00 4.85
4617 4835 4.409718 TTCCTGCACTTGTACAGTTGTA 57.590 40.909 0.00 0.00 30.92 2.41
4618 4836 3.275617 TTCCTGCACTTGTACAGTTGT 57.724 42.857 0.00 0.00 30.92 3.32
4619 4837 4.036734 ACATTTCCTGCACTTGTACAGTTG 59.963 41.667 0.00 0.00 30.92 3.16
4620 4838 4.036734 CACATTTCCTGCACTTGTACAGTT 59.963 41.667 0.00 0.00 30.92 3.16
4621 4839 3.565482 CACATTTCCTGCACTTGTACAGT 59.435 43.478 0.00 0.00 35.35 3.55
4622 4840 3.610114 GCACATTTCCTGCACTTGTACAG 60.610 47.826 0.00 0.00 34.56 2.74
4641 4859 5.394115 CCATTGTATAAGGGGTTTTCTGCAC 60.394 44.000 0.00 0.00 34.16 4.57
4692 4913 8.221965 TGCTCGGTGTTATAGTCCTATATATG 57.778 38.462 0.00 0.00 0.00 1.78
4701 4922 2.873133 AGCTGCTCGGTGTTATAGTC 57.127 50.000 0.00 0.00 0.00 2.59
4721 4942 8.414629 AATCCATAAGAGTTTCTTTTTCTGCT 57.585 30.769 0.00 0.00 37.89 4.24
4829 5051 3.882888 GGAACCACACTGAAATGTCTGAA 59.117 43.478 0.00 0.00 0.00 3.02
4967 5189 5.540911 AGTTTGTTATCTGCACAAAATGGG 58.459 37.500 1.43 0.00 43.89 4.00
5064 5286 9.139734 AGATGCTACAATACAAATGGAATGATT 57.860 29.630 0.00 0.00 0.00 2.57
5134 5356 4.133796 GCCGGGCTTGTGCATTCC 62.134 66.667 12.87 0.00 41.91 3.01
5219 5441 6.803154 ACTGGAAATAGAACACTTGTAAGC 57.197 37.500 0.00 0.00 0.00 3.09
5228 5450 9.491675 TCGTAATTTACAACTGGAAATAGAACA 57.508 29.630 7.31 0.00 0.00 3.18
5316 5543 7.878644 GGTTCTGTGAGGACTTTATTTTCTACT 59.121 37.037 0.00 0.00 0.00 2.57
5317 5544 7.148623 CGGTTCTGTGAGGACTTTATTTTCTAC 60.149 40.741 0.00 0.00 0.00 2.59
5318 5545 6.872020 CGGTTCTGTGAGGACTTTATTTTCTA 59.128 38.462 0.00 0.00 0.00 2.10
5499 5947 2.030027 ACATTCAGTCCCAGACCTGA 57.970 50.000 0.00 0.00 32.18 3.86
5544 5992 5.392487 GCAAGTCTCCATTCTTTTAAGCCTC 60.392 44.000 0.00 0.00 0.00 4.70
5572 6020 4.326826 ACACCAATATTCAGTCCACACAG 58.673 43.478 0.00 0.00 0.00 3.66
5573 6021 4.365514 ACACCAATATTCAGTCCACACA 57.634 40.909 0.00 0.00 0.00 3.72
5607 6057 3.653009 CGGCCACACACACTGCAG 61.653 66.667 13.48 13.48 0.00 4.41
5623 6079 3.699894 AGACCTGCTGAGTGCCCG 61.700 66.667 0.00 0.00 42.00 6.13
5654 6111 0.037697 ATCTCCACTTTGCACGCGTA 60.038 50.000 13.44 0.00 0.00 4.42
5656 6113 1.133253 CATCTCCACTTTGCACGCG 59.867 57.895 3.53 3.53 0.00 6.01
5731 6188 0.966920 CCCACTCGAGTAACCTGTGT 59.033 55.000 19.57 0.00 0.00 3.72
5779 6236 1.291184 TTGCACTCATTCGAGGCACG 61.291 55.000 0.00 0.00 44.17 5.34
5913 6376 2.105128 CGGCGCACTCTAAGGGAG 59.895 66.667 10.83 0.00 46.87 4.30
5953 6416 1.750399 CCGTTGGATTGGCCTGGAG 60.750 63.158 3.32 0.00 37.63 3.86
5966 6429 0.521735 GGCTTGACTTTAGGCCGTTG 59.478 55.000 0.00 0.00 35.08 4.10
5994 6457 1.572085 CTGCACTTTCCAGGCACTCG 61.572 60.000 0.00 0.00 34.60 4.18
6054 6526 4.876125 AGACAGTATGACTTCAGTGTGTG 58.124 43.478 0.00 0.00 38.06 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.