Multiple sequence alignment - TraesCS2A01G397100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G397100 chr2A 100.000 5993 0 0 1 5993 650658817 650652825 0.000000e+00 11068.0
1 TraesCS2A01G397100 chr2A 82.892 415 56 12 3055 3463 56820000 56819595 5.710000e-95 359.0
2 TraesCS2A01G397100 chr2A 85.882 170 21 3 3790 3958 80262282 80262449 1.720000e-40 178.0
3 TraesCS2A01G397100 chr2A 89.167 120 9 4 3637 3756 56810832 56810717 4.840000e-31 147.0
4 TraesCS2A01G397100 chr2A 78.505 214 42 3 3045 3258 338519971 338520180 2.910000e-28 137.0
5 TraesCS2A01G397100 chr2B 91.437 3013 103 53 119 3055 593678723 593675790 0.000000e+00 3991.0
6 TraesCS2A01G397100 chr2B 90.913 2234 104 34 3755 5945 593675800 593673623 0.000000e+00 2909.0
7 TraesCS2A01G397100 chr2B 82.245 597 80 15 3055 3646 406298558 406299133 5.400000e-135 492.0
8 TraesCS2A01G397100 chr2B 88.333 120 10 4 3637 3756 406299156 406299271 2.250000e-29 141.0
9 TraesCS2A01G397100 chr2B 90.625 96 5 1 5897 5992 593673616 593673525 2.270000e-24 124.0
10 TraesCS2A01G397100 chr2D 95.964 1561 51 8 1495 3052 506166199 506164648 0.000000e+00 2523.0
11 TraesCS2A01G397100 chr2D 86.014 1430 95 49 119 1488 506167699 506166315 0.000000e+00 1435.0
12 TraesCS2A01G397100 chr2D 94.765 745 36 3 4281 5025 506164173 506163432 0.000000e+00 1157.0
13 TraesCS2A01G397100 chr2D 88.048 912 55 19 5038 5945 506163387 506162526 0.000000e+00 1031.0
14 TraesCS2A01G397100 chr2D 89.881 504 22 12 3755 4247 506164655 506164170 6.600000e-174 621.0
15 TraesCS2A01G397100 chr1B 90.199 602 44 3 3063 3649 659699390 659699991 0.000000e+00 771.0
16 TraesCS2A01G397100 chr1B 81.623 604 62 20 3055 3649 105740234 105739671 7.080000e-124 455.0
17 TraesCS2A01G397100 chr1B 93.333 120 5 2 3637 3756 659700011 659700127 2.220000e-39 174.0
18 TraesCS2A01G397100 chr7A 82.862 601 79 12 3055 3649 18431376 18431958 8.900000e-143 518.0
19 TraesCS2A01G397100 chr7A 85.833 120 14 2 3637 3756 297108393 297108509 2.270000e-24 124.0
20 TraesCS2A01G397100 chr4B 93.064 346 24 0 3304 3649 41834187 41833842 1.930000e-139 507.0
21 TraesCS2A01G397100 chr4B 79.387 718 105 25 3056 3752 205187995 205188690 3.270000e-127 466.0
22 TraesCS2A01G397100 chr4B 92.500 120 6 2 3637 3756 41833822 41833706 1.030000e-37 169.0
23 TraesCS2A01G397100 chr4B 87.500 120 12 3 3637 3756 300527154 300527270 1.050000e-27 135.0
24 TraesCS2A01G397100 chr5B 81.833 600 83 13 3055 3649 221814740 221815318 1.170000e-131 481.0
25 TraesCS2A01G397100 chr5B 90.345 290 17 1 3055 3333 554213815 554213526 2.640000e-98 370.0
26 TraesCS2A01G397100 chr5B 92.462 199 15 0 3451 3649 554213495 554213297 9.830000e-73 285.0
27 TraesCS2A01G397100 chr5B 93.388 121 5 2 3637 3757 554213277 554213160 6.170000e-40 176.0
28 TraesCS2A01G397100 chr4A 90.323 124 9 3 3637 3760 43267059 43266939 6.220000e-35 159.0
29 TraesCS2A01G397100 chr4A 88.696 115 10 3 3637 3751 714993175 714993286 2.910000e-28 137.0
30 TraesCS2A01G397100 chr7D 86.301 73 10 0 3770 3842 562396248 562396176 4.980000e-11 80.5
31 TraesCS2A01G397100 chr3A 100.000 31 0 0 1453 1483 16667445 16667475 2.330000e-04 58.4
32 TraesCS2A01G397100 chr3A 100.000 31 0 0 1453 1483 80689296 80689266 2.330000e-04 58.4
33 TraesCS2A01G397100 chr3A 100.000 31 0 0 1453 1483 641863844 641863814 2.330000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G397100 chr2A 650652825 650658817 5992 True 11068.000000 11068 100.000000 1 5993 1 chr2A.!!$R3 5992
1 TraesCS2A01G397100 chr2B 593673525 593678723 5198 True 2341.333333 3991 90.991667 119 5992 3 chr2B.!!$R1 5873
2 TraesCS2A01G397100 chr2B 406298558 406299271 713 False 316.500000 492 85.289000 3055 3756 2 chr2B.!!$F1 701
3 TraesCS2A01G397100 chr2D 506162526 506167699 5173 True 1353.400000 2523 90.934400 119 5945 5 chr2D.!!$R1 5826
4 TraesCS2A01G397100 chr1B 659699390 659700127 737 False 472.500000 771 91.766000 3063 3756 2 chr1B.!!$F1 693
5 TraesCS2A01G397100 chr1B 105739671 105740234 563 True 455.000000 455 81.623000 3055 3649 1 chr1B.!!$R1 594
6 TraesCS2A01G397100 chr7A 18431376 18431958 582 False 518.000000 518 82.862000 3055 3649 1 chr7A.!!$F1 594
7 TraesCS2A01G397100 chr4B 205187995 205188690 695 False 466.000000 466 79.387000 3056 3752 1 chr4B.!!$F1 696
8 TraesCS2A01G397100 chr5B 221814740 221815318 578 False 481.000000 481 81.833000 3055 3649 1 chr5B.!!$F1 594
9 TraesCS2A01G397100 chr5B 554213160 554213815 655 True 277.000000 370 92.065000 3055 3757 3 chr5B.!!$R1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.108898 CCTCGCCAGTCTCTCTGTTG 60.109 60.000 0.00 0.0 42.19 3.33 F
628 678 0.179210 CCGCCACCGTGTATTTTTCG 60.179 55.000 0.00 0.0 0.00 3.46 F
769 822 0.541863 CCGGTGATGGAGCTAGGTTT 59.458 55.000 0.00 0.0 0.00 3.27 F
897 950 0.927537 CGTTGCGGAGAATTGCGATA 59.072 50.000 0.00 0.0 41.04 2.92 F
1485 1591 1.495951 CGCGGTGGTAAAGCTGTTC 59.504 57.895 0.00 0.0 0.00 3.18 F
2015 2235 1.756538 GGAGCCTCTTCTCTCCTCTTG 59.243 57.143 1.30 0.0 44.19 3.02 F
3198 3421 0.322816 TGCTCTCCATTCAACCCAGC 60.323 55.000 0.00 0.0 0.00 4.85 F
4530 4836 0.319900 GTTCTGCGCCTTCAGACTCA 60.320 55.000 4.18 0.0 42.27 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1439 1545 0.249398 CCCCTTCCCAGTTCACGTAG 59.751 60.000 0.00 0.0 0.00 3.51 R
1701 1921 3.325293 ACTACTGTGGCATCTGTTCAG 57.675 47.619 0.00 0.0 0.00 3.02 R
2481 2701 3.944055 AGAGTAGCATTCTTGACACGT 57.056 42.857 0.00 0.0 0.00 4.49 R
2648 2868 6.697892 GCGACTTTAATAGACAACTCTAGCAT 59.302 38.462 0.00 0.0 32.24 3.79 R
3189 3412 0.105246 AATGGTTTGGGCTGGGTTGA 60.105 50.000 0.00 0.0 0.00 3.18 R
3518 3777 0.038983 TTCAAAGACGCGATCGGACA 60.039 50.000 15.93 0.0 40.69 4.02 R
4980 5288 0.179205 GCAGCAGCTAACGCTTCAAG 60.179 55.000 0.00 0.0 46.47 3.02 R
5947 6294 0.035739 GCGGTTTCAGGTTCACCCTA 59.964 55.000 0.00 0.0 43.86 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.962089 CGCAGCAACAATATTGGGC 58.038 52.632 19.37 20.00 34.24 5.36
38 39 0.528249 CGCAGCAACAATATTGGGCC 60.528 55.000 22.92 0.00 34.46 5.80
39 40 0.536260 GCAGCAACAATATTGGGCCA 59.464 50.000 22.92 0.00 34.46 5.36
40 41 1.066286 GCAGCAACAATATTGGGCCAA 60.066 47.619 23.33 23.33 34.46 4.52
41 42 2.420408 GCAGCAACAATATTGGGCCAAT 60.420 45.455 32.59 32.59 37.80 3.16
42 43 3.460103 CAGCAACAATATTGGGCCAATC 58.540 45.455 33.85 18.05 35.54 2.67
43 44 2.435437 AGCAACAATATTGGGCCAATCC 59.565 45.455 33.85 14.50 35.54 3.01
44 45 2.170187 GCAACAATATTGGGCCAATCCA 59.830 45.455 33.85 19.13 35.54 3.41
45 46 3.742013 GCAACAATATTGGGCCAATCCAG 60.742 47.826 33.85 24.49 38.17 3.86
46 47 3.403228 ACAATATTGGGCCAATCCAGT 57.597 42.857 33.85 25.10 38.17 4.00
47 48 4.534647 ACAATATTGGGCCAATCCAGTA 57.465 40.909 33.85 17.60 38.17 2.74
48 49 4.473444 ACAATATTGGGCCAATCCAGTAG 58.527 43.478 33.85 20.04 38.17 2.57
49 50 2.656947 TATTGGGCCAATCCAGTAGC 57.343 50.000 33.85 0.00 38.17 3.58
50 51 0.630673 ATTGGGCCAATCCAGTAGCA 59.369 50.000 25.94 0.00 38.17 3.49
51 52 0.323360 TTGGGCCAATCCAGTAGCAC 60.323 55.000 16.66 0.00 38.17 4.40
52 53 1.453928 GGGCCAATCCAGTAGCACC 60.454 63.158 4.39 0.00 36.21 5.01
53 54 1.819632 GGCCAATCCAGTAGCACCG 60.820 63.158 0.00 0.00 34.01 4.94
54 55 2.472909 GCCAATCCAGTAGCACCGC 61.473 63.158 0.00 0.00 0.00 5.68
55 56 1.078497 CCAATCCAGTAGCACCGCA 60.078 57.895 0.00 0.00 0.00 5.69
56 57 1.369091 CCAATCCAGTAGCACCGCAC 61.369 60.000 0.00 0.00 0.00 5.34
57 58 0.391661 CAATCCAGTAGCACCGCACT 60.392 55.000 0.00 0.00 0.00 4.40
58 59 0.391661 AATCCAGTAGCACCGCACTG 60.392 55.000 9.93 9.93 37.40 3.66
59 60 1.544825 ATCCAGTAGCACCGCACTGT 61.545 55.000 13.59 0.00 36.62 3.55
60 61 0.896479 TCCAGTAGCACCGCACTGTA 60.896 55.000 13.59 1.04 36.62 2.74
61 62 0.458543 CCAGTAGCACCGCACTGTAG 60.459 60.000 13.59 0.00 36.62 2.74
62 63 0.526211 CAGTAGCACCGCACTGTAGA 59.474 55.000 9.13 0.00 35.05 2.59
63 64 0.526662 AGTAGCACCGCACTGTAGAC 59.473 55.000 0.00 0.00 0.00 2.59
64 65 0.797249 GTAGCACCGCACTGTAGACG 60.797 60.000 0.00 0.00 0.00 4.18
65 66 0.956902 TAGCACCGCACTGTAGACGA 60.957 55.000 0.00 0.00 0.00 4.20
66 67 1.801913 GCACCGCACTGTAGACGAG 60.802 63.158 0.00 0.00 0.00 4.18
67 68 1.873863 CACCGCACTGTAGACGAGA 59.126 57.895 0.00 0.00 0.00 4.04
68 69 0.179187 CACCGCACTGTAGACGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
69 70 1.226435 CCGCACTGTAGACGAGAGC 60.226 63.158 0.00 0.00 0.00 4.09
70 71 1.649390 CCGCACTGTAGACGAGAGCT 61.649 60.000 0.00 0.00 0.00 4.09
71 72 1.007580 CGCACTGTAGACGAGAGCTA 58.992 55.000 0.00 0.00 0.00 3.32
72 73 1.397343 CGCACTGTAGACGAGAGCTAA 59.603 52.381 0.00 0.00 0.00 3.09
73 74 2.032302 CGCACTGTAGACGAGAGCTAAT 59.968 50.000 0.00 0.00 0.00 1.73
74 75 3.247886 CGCACTGTAGACGAGAGCTAATA 59.752 47.826 0.00 0.00 0.00 0.98
75 76 4.529446 GCACTGTAGACGAGAGCTAATAC 58.471 47.826 0.00 0.00 0.00 1.89
76 77 4.035324 GCACTGTAGACGAGAGCTAATACA 59.965 45.833 0.00 0.00 0.00 2.29
77 78 5.503498 CACTGTAGACGAGAGCTAATACAC 58.497 45.833 0.00 0.00 0.00 2.90
78 79 4.270566 ACTGTAGACGAGAGCTAATACACG 59.729 45.833 0.00 0.00 0.00 4.49
79 80 4.436332 TGTAGACGAGAGCTAATACACGA 58.564 43.478 0.00 0.00 0.00 4.35
80 81 3.948196 AGACGAGAGCTAATACACGAC 57.052 47.619 0.00 0.00 0.00 4.34
81 82 3.268330 AGACGAGAGCTAATACACGACA 58.732 45.455 0.00 0.00 0.00 4.35
82 83 3.063725 AGACGAGAGCTAATACACGACAC 59.936 47.826 0.00 0.00 0.00 3.67
83 84 2.222976 ACGAGAGCTAATACACGACACG 60.223 50.000 0.00 0.00 0.00 4.49
84 85 2.110226 GAGAGCTAATACACGACACGC 58.890 52.381 0.00 0.00 0.00 5.34
85 86 1.471287 AGAGCTAATACACGACACGCA 59.529 47.619 0.00 0.00 0.00 5.24
86 87 2.094906 AGAGCTAATACACGACACGCAA 60.095 45.455 0.00 0.00 0.00 4.85
87 88 2.664568 GAGCTAATACACGACACGCAAA 59.335 45.455 0.00 0.00 0.00 3.68
88 89 2.666508 AGCTAATACACGACACGCAAAG 59.333 45.455 0.00 0.00 0.00 2.77
89 90 2.222729 GCTAATACACGACACGCAAAGG 60.223 50.000 0.00 0.00 0.00 3.11
90 91 0.515564 AATACACGACACGCAAAGGC 59.484 50.000 0.00 0.00 0.00 4.35
101 102 3.080647 GCAAAGGCGGTACATAGCT 57.919 52.632 0.00 0.00 0.00 3.32
102 103 0.657840 GCAAAGGCGGTACATAGCTG 59.342 55.000 0.00 0.00 0.00 4.24
103 104 2.012051 GCAAAGGCGGTACATAGCTGT 61.012 52.381 0.00 0.00 39.49 4.40
104 105 1.933853 CAAAGGCGGTACATAGCTGTC 59.066 52.381 0.00 0.00 36.79 3.51
105 106 1.191535 AAGGCGGTACATAGCTGTCA 58.808 50.000 0.00 0.00 36.79 3.58
106 107 0.460311 AGGCGGTACATAGCTGTCAC 59.540 55.000 0.00 0.00 36.79 3.67
107 108 0.870307 GGCGGTACATAGCTGTCACG 60.870 60.000 0.00 0.00 36.79 4.35
108 109 1.480219 GCGGTACATAGCTGTCACGC 61.480 60.000 0.00 4.05 46.18 5.34
109 110 1.200474 CGGTACATAGCTGTCACGCG 61.200 60.000 3.53 3.53 36.79 6.01
110 111 1.480219 GGTACATAGCTGTCACGCGC 61.480 60.000 5.73 0.00 36.79 6.86
111 112 0.525668 GTACATAGCTGTCACGCGCT 60.526 55.000 5.73 0.00 40.15 5.92
112 113 0.172578 TACATAGCTGTCACGCGCTT 59.827 50.000 5.73 0.00 37.68 4.68
113 114 0.172578 ACATAGCTGTCACGCGCTTA 59.827 50.000 5.73 0.00 37.68 3.09
114 115 1.202417 ACATAGCTGTCACGCGCTTAT 60.202 47.619 5.73 0.00 37.68 1.73
115 116 2.034179 ACATAGCTGTCACGCGCTTATA 59.966 45.455 5.73 0.00 37.68 0.98
116 117 2.855660 TAGCTGTCACGCGCTTATAA 57.144 45.000 5.73 0.00 37.68 0.98
117 118 1.278238 AGCTGTCACGCGCTTATAAC 58.722 50.000 5.73 0.00 31.17 1.89
185 186 0.914902 GGCTAGTTTCCTGGTCCCCT 60.915 60.000 0.00 0.00 0.00 4.79
186 187 0.542333 GCTAGTTTCCTGGTCCCCTC 59.458 60.000 0.00 0.00 0.00 4.30
187 188 0.824759 CTAGTTTCCTGGTCCCCTCG 59.175 60.000 0.00 0.00 0.00 4.63
188 189 1.262640 TAGTTTCCTGGTCCCCTCGC 61.263 60.000 0.00 0.00 0.00 5.03
190 191 4.649705 TTCCTGGTCCCCTCGCCA 62.650 66.667 0.00 0.00 0.00 5.69
193 194 3.775654 CTGGTCCCCTCGCCAGTC 61.776 72.222 2.66 0.00 45.28 3.51
194 195 4.316823 TGGTCCCCTCGCCAGTCT 62.317 66.667 0.00 0.00 0.00 3.24
196 197 2.363147 GTCCCCTCGCCAGTCTCT 60.363 66.667 0.00 0.00 0.00 3.10
198 199 2.043450 CCCCTCGCCAGTCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
202 203 0.108898 CCTCGCCAGTCTCTCTGTTG 60.109 60.000 0.00 0.00 42.19 3.33
203 204 0.600557 CTCGCCAGTCTCTCTGTTGT 59.399 55.000 0.00 0.00 42.19 3.32
206 207 1.539065 CGCCAGTCTCTCTGTTGTGTT 60.539 52.381 0.00 0.00 42.19 3.32
207 208 2.139118 GCCAGTCTCTCTGTTGTGTTC 58.861 52.381 0.00 0.00 42.19 3.18
208 209 2.760374 CCAGTCTCTCTGTTGTGTTCC 58.240 52.381 0.00 0.00 42.19 3.62
210 211 2.032620 AGTCTCTCTGTTGTGTTCCGT 58.967 47.619 0.00 0.00 0.00 4.69
211 212 2.431057 AGTCTCTCTGTTGTGTTCCGTT 59.569 45.455 0.00 0.00 0.00 4.44
212 213 3.118738 AGTCTCTCTGTTGTGTTCCGTTT 60.119 43.478 0.00 0.00 0.00 3.60
213 214 3.245519 GTCTCTCTGTTGTGTTCCGTTTC 59.754 47.826 0.00 0.00 0.00 2.78
214 215 2.544267 CTCTCTGTTGTGTTCCGTTTCC 59.456 50.000 0.00 0.00 0.00 3.13
303 305 4.925576 GCATCGCGTCGTCCGGAT 62.926 66.667 7.81 0.00 36.94 4.18
304 306 2.278596 CATCGCGTCGTCCGGATT 60.279 61.111 7.81 0.00 36.94 3.01
305 307 2.025727 ATCGCGTCGTCCGGATTC 59.974 61.111 7.81 0.00 36.94 2.52
306 308 2.478890 ATCGCGTCGTCCGGATTCT 61.479 57.895 7.81 0.00 36.94 2.40
370 383 2.366435 TCCCAATCCCGTCCCCTC 60.366 66.667 0.00 0.00 0.00 4.30
382 395 4.918201 CCCCTCTCCGCGGCAATC 62.918 72.222 23.51 0.00 0.00 2.67
383 396 3.854669 CCCTCTCCGCGGCAATCT 61.855 66.667 23.51 0.00 0.00 2.40
388 401 2.435938 TCCGCGGCAATCTGTTCC 60.436 61.111 23.51 0.00 0.00 3.62
394 407 0.806102 CGGCAATCTGTTCCGATCGT 60.806 55.000 15.09 0.00 45.53 3.73
400 413 1.299165 CTGTTCCGATCGTAGCCCG 60.299 63.158 15.09 0.00 38.13 6.13
449 468 2.415010 CATCTCCTCACGCCCTCG 59.585 66.667 0.00 0.00 42.43 4.63
466 485 0.901580 TCGTAAGCGACTTTCCCCCT 60.902 55.000 0.00 0.00 42.81 4.79
467 486 0.459759 CGTAAGCGACTTTCCCCCTC 60.460 60.000 0.00 0.00 41.33 4.30
469 488 0.252558 TAAGCGACTTTCCCCCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
470 489 1.554583 AAGCGACTTTCCCCCTCCTC 61.555 60.000 0.00 0.00 0.00 3.71
471 490 2.893398 CGACTTTCCCCCTCCTCG 59.107 66.667 0.00 0.00 0.00 4.63
472 491 1.681327 CGACTTTCCCCCTCCTCGA 60.681 63.158 0.00 0.00 0.00 4.04
484 507 1.660167 CTCCTCGATTGATTGCAGCA 58.340 50.000 0.00 0.00 0.00 4.41
485 508 1.598132 CTCCTCGATTGATTGCAGCAG 59.402 52.381 0.00 0.00 0.00 4.24
499 522 4.828925 GCAGAGCGACTCCTGGCC 62.829 72.222 0.00 0.00 0.00 5.36
578 617 3.380637 TCTGAGGTACGAGCATTAGAACC 59.619 47.826 0.00 0.00 0.00 3.62
623 673 1.340248 CTAGATCCGCCACCGTGTATT 59.660 52.381 0.00 0.00 0.00 1.89
627 677 1.158434 TCCGCCACCGTGTATTTTTC 58.842 50.000 0.00 0.00 0.00 2.29
628 678 0.179210 CCGCCACCGTGTATTTTTCG 60.179 55.000 0.00 0.00 0.00 3.46
710 763 2.229784 CAGGGCTTGCTCGAAAGAAAAT 59.770 45.455 0.96 0.00 41.32 1.82
724 777 7.201145 TCGAAAGAAAATCTAGCGCTACTTAT 58.799 34.615 14.45 4.69 37.03 1.73
725 778 8.347771 TCGAAAGAAAATCTAGCGCTACTTATA 58.652 33.333 14.45 0.00 37.03 0.98
769 822 0.541863 CCGGTGATGGAGCTAGGTTT 59.458 55.000 0.00 0.00 0.00 3.27
802 855 6.347402 GCTGTAAAGTTTCGAGCTTGTTGATA 60.347 38.462 0.00 0.00 0.00 2.15
820 873 9.487790 TTGTTGATAATCCTGAAATTTTGGTTC 57.512 29.630 9.89 5.69 0.00 3.62
832 885 2.961531 TTTGGTTCGGATCCTTTGGA 57.038 45.000 10.75 0.00 35.55 3.53
833 886 3.449746 TTTGGTTCGGATCCTTTGGAT 57.550 42.857 10.75 0.00 46.28 3.41
879 932 3.024547 TCCTTGTCATCCTAGTTCTCCG 58.975 50.000 0.00 0.00 0.00 4.63
883 936 2.094182 TGTCATCCTAGTTCTCCGTTGC 60.094 50.000 0.00 0.00 0.00 4.17
897 950 0.927537 CGTTGCGGAGAATTGCGATA 59.072 50.000 0.00 0.00 41.04 2.92
908 961 7.132213 CGGAGAATTGCGATATTGTACATTTT 58.868 34.615 0.00 0.00 41.04 1.82
916 969 7.068955 TGCGATATTGTACATTTTCTTATGCG 58.931 34.615 0.00 0.00 0.00 4.73
920 973 5.637006 TTGTACATTTTCTTATGCGGCTT 57.363 34.783 0.00 0.00 0.00 4.35
933 986 2.371306 TGCGGCTTAAATAGTTTCCCC 58.629 47.619 0.00 0.00 0.00 4.81
1045 1103 5.127031 GCCCTTGAAATTTCCTATGCAACTA 59.873 40.000 15.48 0.00 0.00 2.24
1046 1104 6.350949 GCCCTTGAAATTTCCTATGCAACTAA 60.351 38.462 15.48 0.00 0.00 2.24
1254 1338 9.166173 TGAATCTGGTTATGTTCATACTCTTTG 57.834 33.333 0.00 0.00 0.00 2.77
1324 1408 7.709182 TGACCATACTAACAATAAACTGATCCG 59.291 37.037 0.00 0.00 0.00 4.18
1338 1422 3.775316 ACTGATCCGGAGATAACTTTGGT 59.225 43.478 11.34 0.00 30.90 3.67
1339 1423 4.960469 ACTGATCCGGAGATAACTTTGGTA 59.040 41.667 11.34 0.00 30.90 3.25
1485 1591 1.495951 CGCGGTGGTAAAGCTGTTC 59.504 57.895 0.00 0.00 0.00 3.18
1544 1759 6.826668 TCATCCCTTCATGTATGTACGATTT 58.173 36.000 0.00 0.00 0.00 2.17
1749 1969 5.970317 TCTCTCGTATTTGGTGTAGTTCA 57.030 39.130 0.00 0.00 0.00 3.18
1928 2148 7.730084 AGCAGTGCTAGAATCTGAATTGTATA 58.270 34.615 18.11 0.00 36.99 1.47
2015 2235 1.756538 GGAGCCTCTTCTCTCCTCTTG 59.243 57.143 1.30 0.00 44.19 3.02
2143 2363 5.667626 TCTTCCATTAGACCTTAGGCTGAAT 59.332 40.000 0.00 0.00 0.00 2.57
2415 2635 4.451096 TGAAAAGTATTCCGACTGAGTTGC 59.549 41.667 0.00 0.00 0.00 4.17
2481 2701 5.551233 CTTCTTCAAGAGGGTGACATTGTA 58.449 41.667 0.00 0.00 0.00 2.41
2672 2892 9.731819 TTATGCTAGAGTTGTCTATTAAAGTCG 57.268 33.333 0.00 0.00 34.63 4.18
3037 3260 6.699575 ATTTATTGTTCCTGTCTGGCATAC 57.300 37.500 0.00 0.00 35.26 2.39
3046 3269 6.169557 TCCTGTCTGGCATACGTTTTATAT 57.830 37.500 0.00 0.00 35.26 0.86
3047 3270 6.220930 TCCTGTCTGGCATACGTTTTATATC 58.779 40.000 0.00 0.00 35.26 1.63
3048 3271 6.041637 TCCTGTCTGGCATACGTTTTATATCT 59.958 38.462 0.00 0.00 35.26 1.98
3049 3272 6.146184 CCTGTCTGGCATACGTTTTATATCTG 59.854 42.308 0.00 0.00 0.00 2.90
3050 3273 5.465390 TGTCTGGCATACGTTTTATATCTGC 59.535 40.000 0.00 0.00 0.00 4.26
3051 3274 5.465390 GTCTGGCATACGTTTTATATCTGCA 59.535 40.000 0.00 0.00 0.00 4.41
3052 3275 5.696270 TCTGGCATACGTTTTATATCTGCAG 59.304 40.000 7.63 7.63 0.00 4.41
3053 3276 5.606505 TGGCATACGTTTTATATCTGCAGA 58.393 37.500 20.79 20.79 0.00 4.26
3139 3362 1.952621 TCCAAACCAAACCAACCCAA 58.047 45.000 0.00 0.00 0.00 4.12
3189 3412 3.635373 CCAAACTATGCATGCTCTCCATT 59.365 43.478 20.33 4.42 29.71 3.16
3198 3421 0.322816 TGCTCTCCATTCAACCCAGC 60.323 55.000 0.00 0.00 0.00 4.85
3214 3437 1.419387 CCAGCCCAAACCATTTCCAAA 59.581 47.619 0.00 0.00 0.00 3.28
3215 3438 2.158696 CCAGCCCAAACCATTTCCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
3267 3492 3.356290 GACAAATCCATAACAGGGCACT 58.644 45.455 0.00 0.00 0.00 4.40
3358 3596 2.962421 GCACTAGTAGCTTGGATCCTCT 59.038 50.000 14.23 9.84 0.00 3.69
3411 3649 2.300152 CCCAAAGAGACTAGCACACAGA 59.700 50.000 0.00 0.00 0.00 3.41
3416 3654 0.605589 AGACTAGCACACAGACAGGC 59.394 55.000 0.00 0.00 0.00 4.85
3434 3672 1.261619 GGCTGATCGATTTTGTAGCCG 59.738 52.381 16.95 0.00 40.96 5.52
3496 3747 2.109538 CTGTCTTGCAGTGCGTGTGG 62.110 60.000 11.20 0.00 40.27 4.17
3497 3748 3.279116 TCTTGCAGTGCGTGTGGC 61.279 61.111 11.20 0.00 43.96 5.01
3498 3749 4.332637 CTTGCAGTGCGTGTGGCC 62.333 66.667 11.20 0.00 42.61 5.36
3518 3777 3.379445 GTGGGCAGCAGCAGCAAT 61.379 61.111 12.41 0.00 45.49 3.56
3534 3793 0.999406 CAATGTCCGATCGCGTCTTT 59.001 50.000 10.32 4.00 35.23 2.52
3560 3821 4.021925 GCTGGAGGTGGAAGCGGT 62.022 66.667 0.00 0.00 40.95 5.68
3629 3890 6.872920 TGCACTTGTTTTGGACTAAGAAATT 58.127 32.000 0.00 0.00 0.00 1.82
3688 3980 7.002879 CCATCTCAATCCAATAGAGACCAAAT 58.997 38.462 0.00 0.00 40.83 2.32
3690 3982 7.443302 TCTCAATCCAATAGAGACCAAATCT 57.557 36.000 0.00 0.00 41.91 2.40
3691 3983 8.553085 TCTCAATCCAATAGAGACCAAATCTA 57.447 34.615 0.00 0.00 38.00 1.98
3782 4074 4.444876 GCAGATCTATTTAGGCCCTGTTCA 60.445 45.833 0.00 0.00 0.00 3.18
3786 4078 5.450818 TCTATTTAGGCCCTGTTCACAAT 57.549 39.130 0.00 0.00 0.00 2.71
4095 4398 3.556423 GGAAACTTTCCTCTAGCCGTTCA 60.556 47.826 12.69 0.00 46.57 3.18
4270 4573 7.277981 GTCACTATGACCAACTCGATGTATTTT 59.722 37.037 0.00 0.00 41.37 1.82
4277 4580 9.438228 TGACCAACTCGATGTATTTTATGTTTA 57.562 29.630 0.00 0.00 0.00 2.01
4450 4756 1.210967 TCACTGGTTCAGGAAAACGGT 59.789 47.619 0.00 0.00 45.37 4.83
4467 4773 1.694856 GTTGGATGGTAAGGGCCCA 59.305 57.895 27.56 1.75 36.16 5.36
4530 4836 0.319900 GTTCTGCGCCTTCAGACTCA 60.320 55.000 4.18 0.00 42.27 3.41
4581 4887 0.747283 CTTCAGGAGCCAGCACATCC 60.747 60.000 0.00 0.00 0.00 3.51
4742 5050 7.312899 CAAGTTAAACCTTTCAAGTTCAGTGT 58.687 34.615 0.00 0.00 0.00 3.55
4745 5053 9.841295 AGTTAAACCTTTCAAGTTCAGTGTATA 57.159 29.630 0.00 0.00 0.00 1.47
4747 5055 6.780706 AACCTTTCAAGTTCAGTGTATACG 57.219 37.500 0.00 0.00 0.00 3.06
4748 5056 5.235516 ACCTTTCAAGTTCAGTGTATACGG 58.764 41.667 0.00 0.00 0.00 4.02
4767 5075 1.672881 GGAGACAAATTCCGGATGCTG 59.327 52.381 4.15 5.23 0.00 4.41
4980 5288 3.591023 GTTCACAGGAAAGAGCTACTCC 58.409 50.000 0.00 0.00 34.13 3.85
4989 5297 1.551452 AGAGCTACTCCTTGAAGCGT 58.449 50.000 0.00 0.00 41.19 5.07
5012 5320 2.735823 GCTGCTGCTGGTATTTATTGC 58.264 47.619 8.53 0.00 36.03 3.56
5025 5333 6.072175 TGGTATTTATTGCCAGTGACAACTTC 60.072 38.462 0.00 0.00 32.98 3.01
5027 5335 2.363306 ATTGCCAGTGACAACTTCCA 57.637 45.000 0.00 0.00 32.98 3.53
5028 5336 2.136298 TTGCCAGTGACAACTTCCAA 57.864 45.000 0.00 0.00 32.98 3.53
5029 5337 1.679139 TGCCAGTGACAACTTCCAAG 58.321 50.000 0.00 0.00 32.98 3.61
5030 5338 0.312102 GCCAGTGACAACTTCCAAGC 59.688 55.000 0.00 0.00 32.98 4.01
5031 5339 1.679139 CCAGTGACAACTTCCAAGCA 58.321 50.000 0.00 0.00 32.98 3.91
5032 5340 2.023673 CCAGTGACAACTTCCAAGCAA 58.976 47.619 0.00 0.00 32.98 3.91
5035 5343 3.567164 CAGTGACAACTTCCAAGCAAGAT 59.433 43.478 0.00 0.00 32.98 2.40
5036 5344 3.567164 AGTGACAACTTCCAAGCAAGATG 59.433 43.478 0.00 0.00 30.14 2.90
5114 5455 2.396590 ACCGCGTGTGATAGGAAAAT 57.603 45.000 4.92 0.00 0.00 1.82
5152 5493 5.929697 TTAGCTCGATGGCAATCTATTTG 57.070 39.130 0.00 0.00 38.43 2.32
5161 5502 5.818136 TGGCAATCTATTTGTCAAGTAGC 57.182 39.130 9.64 0.66 46.60 3.58
5217 5558 5.046950 AGTCTTGGTATTCTGTTCCAGTCTC 60.047 44.000 0.00 0.00 32.61 3.36
5304 5645 7.386025 CGATGATGATGTGACATAAACTATGGT 59.614 37.037 0.00 0.00 40.47 3.55
5336 5677 1.664321 GCAGGCAGGCCAGATTCTTG 61.664 60.000 13.63 1.04 38.92 3.02
5450 5793 2.746362 ACAGAGTGCAGCTGATTAAAGC 59.254 45.455 20.43 0.00 43.88 3.51
5465 5808 5.588648 TGATTAAAGCAGGCCAACAGTATAC 59.411 40.000 5.01 0.00 0.00 1.47
5490 5833 0.312416 TTGTTTGGCGATGAAACGGG 59.688 50.000 0.00 0.00 36.30 5.28
5511 5854 1.679680 TGTCGTCGTTCTGGACTTCTT 59.320 47.619 0.00 0.00 34.75 2.52
5534 5877 0.924090 CTTCGGCGTCAGTAGATTGC 59.076 55.000 6.85 0.00 0.00 3.56
5552 5895 2.830104 TGCGATTGATCCACTGATGAG 58.170 47.619 0.00 0.00 0.00 2.90
5553 5896 2.431782 TGCGATTGATCCACTGATGAGA 59.568 45.455 0.00 0.00 0.00 3.27
5554 5897 3.070590 TGCGATTGATCCACTGATGAGAT 59.929 43.478 0.00 0.00 0.00 2.75
5555 5898 3.432592 GCGATTGATCCACTGATGAGATG 59.567 47.826 0.00 0.00 0.00 2.90
5556 5899 4.798593 GCGATTGATCCACTGATGAGATGA 60.799 45.833 0.00 0.00 0.00 2.92
5634 5977 5.230182 TCACTGACTGATTGTGACATGTAC 58.770 41.667 0.00 0.00 36.03 2.90
5637 5980 6.309009 CACTGACTGATTGTGACATGTACTAC 59.691 42.308 0.00 0.00 33.95 2.73
5638 5981 6.015434 ACTGACTGATTGTGACATGTACTACA 60.015 38.462 0.00 1.88 0.00 2.74
5639 5982 6.156519 TGACTGATTGTGACATGTACTACAC 58.843 40.000 0.00 3.13 0.00 2.90
5640 5983 5.161358 ACTGATTGTGACATGTACTACACG 58.839 41.667 0.00 0.00 36.25 4.49
5645 5990 6.665474 TTGTGACATGTACTACACGTTTTT 57.335 33.333 0.00 0.00 36.25 1.94
5648 5993 6.535865 TGTGACATGTACTACACGTTTTTCTT 59.464 34.615 0.00 0.00 36.25 2.52
5659 6004 4.201685 ACACGTTTTTCTTCTTGTCTGTCG 60.202 41.667 0.00 0.00 0.00 4.35
5665 6010 3.667497 TCTTCTTGTCTGTCGCTGAAT 57.333 42.857 0.00 0.00 0.00 2.57
5668 6013 4.212004 TCTTCTTGTCTGTCGCTGAATTTG 59.788 41.667 0.00 0.00 0.00 2.32
5699 6044 3.845781 ACTGAAGAAACAAGAGCTCCA 57.154 42.857 10.93 0.00 0.00 3.86
5709 6054 4.686191 ACAAGAGCTCCAATATCTCCAG 57.314 45.455 10.93 0.00 0.00 3.86
5710 6055 3.390639 ACAAGAGCTCCAATATCTCCAGG 59.609 47.826 10.93 0.00 0.00 4.45
5711 6056 3.627041 AGAGCTCCAATATCTCCAGGA 57.373 47.619 10.93 0.00 0.00 3.86
5712 6057 3.238597 AGAGCTCCAATATCTCCAGGAC 58.761 50.000 10.93 0.00 0.00 3.85
5713 6058 3.116784 AGAGCTCCAATATCTCCAGGACT 60.117 47.826 10.93 0.00 0.00 3.85
5714 6059 3.238597 AGCTCCAATATCTCCAGGACTC 58.761 50.000 0.00 0.00 0.00 3.36
5715 6060 2.301583 GCTCCAATATCTCCAGGACTCC 59.698 54.545 0.00 0.00 0.00 3.85
5716 6061 3.581101 CTCCAATATCTCCAGGACTCCA 58.419 50.000 0.00 0.00 0.00 3.86
5737 6082 0.912486 CTACTTGGCCTAGCTGGGTT 59.088 55.000 18.47 0.12 36.00 4.11
5743 6088 1.153269 GCCTAGCTGGGTTGCTCTC 60.153 63.158 18.47 0.00 42.97 3.20
5768 6113 0.251121 TGAAAGCTCCGGATGGCAAA 60.251 50.000 17.13 0.00 34.14 3.68
5779 6124 4.278170 TCCGGATGGCAAATGAAATGATAC 59.722 41.667 0.00 0.00 34.14 2.24
5810 6156 1.377994 CAGGGTCTTTGCTCAGCCT 59.622 57.895 0.00 0.00 41.37 4.58
5818 6164 3.557903 TTGCTCAGCCTCAGCACCC 62.558 63.158 0.00 0.00 46.65 4.61
5819 6165 4.025858 GCTCAGCCTCAGCACCCA 62.026 66.667 0.00 0.00 43.56 4.51
5820 6166 2.996395 CTCAGCCTCAGCACCCAT 59.004 61.111 0.00 0.00 43.56 4.00
5841 6187 0.250209 ATCCATCATCACGCTGCCTC 60.250 55.000 0.00 0.00 0.00 4.70
5860 6206 0.808755 CGGTCCTGCCATTTTGTACC 59.191 55.000 0.00 0.00 36.97 3.34
5870 6216 3.365969 GCCATTTTGTACCACAGCTACAC 60.366 47.826 0.00 0.00 0.00 2.90
5871 6217 4.072131 CCATTTTGTACCACAGCTACACT 58.928 43.478 0.00 0.00 0.00 3.55
5872 6218 5.242434 CCATTTTGTACCACAGCTACACTA 58.758 41.667 0.00 0.00 0.00 2.74
5873 6219 5.351465 CCATTTTGTACCACAGCTACACTAG 59.649 44.000 0.00 0.00 0.00 2.57
5945 6292 3.759865 ATGCATGGTCCATGGATCC 57.240 52.632 28.11 21.33 47.00 3.36
5947 6294 0.854908 TGCATGGTCCATGGATCCAT 59.145 50.000 28.96 28.96 41.64 3.41
5948 6295 2.064215 TGCATGGTCCATGGATCCATA 58.936 47.619 31.57 21.88 41.64 2.74
5949 6296 2.040679 TGCATGGTCCATGGATCCATAG 59.959 50.000 31.57 26.84 41.64 2.23
5950 6297 2.619849 GCATGGTCCATGGATCCATAGG 60.620 54.545 31.57 26.15 41.64 2.57
5967 6365 2.613506 GGGTGAACCTGAAACCGCG 61.614 63.158 0.00 0.00 34.62 6.46
5992 6390 2.872245 TGCTTGTGAAAGAAGGAACTCG 59.128 45.455 0.00 0.00 33.84 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.865639 GTTGCTGCGCGTGAGTTTTT 60.866 50.000 8.43 0.00 0.00 1.94
9 10 1.298339 GTTGCTGCGCGTGAGTTTT 60.298 52.632 8.43 0.00 0.00 2.43
10 11 1.987704 TTGTTGCTGCGCGTGAGTTT 61.988 50.000 8.43 0.00 0.00 2.66
11 12 1.785041 ATTGTTGCTGCGCGTGAGTT 61.785 50.000 8.43 0.00 0.00 3.01
12 13 0.948623 TATTGTTGCTGCGCGTGAGT 60.949 50.000 8.43 0.00 0.00 3.41
13 14 0.374758 ATATTGTTGCTGCGCGTGAG 59.625 50.000 8.43 5.34 0.00 3.51
14 15 0.801872 AATATTGTTGCTGCGCGTGA 59.198 45.000 8.43 0.00 0.00 4.35
15 16 0.909174 CAATATTGTTGCTGCGCGTG 59.091 50.000 8.43 1.88 0.00 5.34
16 17 0.179166 CCAATATTGTTGCTGCGCGT 60.179 50.000 14.25 0.00 0.00 6.01
17 18 0.866906 CCCAATATTGTTGCTGCGCG 60.867 55.000 14.25 0.00 0.00 6.86
18 19 1.147557 GCCCAATATTGTTGCTGCGC 61.148 55.000 14.25 0.00 0.00 6.09
19 20 0.528249 GGCCCAATATTGTTGCTGCG 60.528 55.000 20.24 3.71 0.00 5.18
20 21 0.536260 TGGCCCAATATTGTTGCTGC 59.464 50.000 20.24 12.23 0.00 5.25
21 22 3.460103 GATTGGCCCAATATTGTTGCTG 58.540 45.455 9.43 4.89 33.90 4.41
22 23 2.435437 GGATTGGCCCAATATTGTTGCT 59.565 45.455 9.43 7.00 33.90 3.91
23 24 2.170187 TGGATTGGCCCAATATTGTTGC 59.830 45.455 9.43 14.87 33.90 4.17
24 25 3.451902 ACTGGATTGGCCCAATATTGTTG 59.548 43.478 9.43 6.32 33.90 3.33
25 26 3.723325 ACTGGATTGGCCCAATATTGTT 58.277 40.909 9.43 0.00 33.90 2.83
26 27 3.403228 ACTGGATTGGCCCAATATTGT 57.597 42.857 9.43 5.49 33.90 2.71
27 28 3.256631 GCTACTGGATTGGCCCAATATTG 59.743 47.826 9.43 8.58 33.90 1.90
28 29 3.117169 TGCTACTGGATTGGCCCAATATT 60.117 43.478 9.43 0.00 33.90 1.28
29 30 2.446666 TGCTACTGGATTGGCCCAATAT 59.553 45.455 9.43 0.00 33.90 1.28
30 31 1.849692 TGCTACTGGATTGGCCCAATA 59.150 47.619 9.43 0.00 33.90 1.90
31 32 0.630673 TGCTACTGGATTGGCCCAAT 59.369 50.000 9.17 9.17 36.72 3.16
32 33 0.323360 GTGCTACTGGATTGGCCCAA 60.323 55.000 0.00 0.00 35.47 4.12
33 34 1.302949 GTGCTACTGGATTGGCCCA 59.697 57.895 0.00 0.00 34.97 5.36
34 35 1.453928 GGTGCTACTGGATTGGCCC 60.454 63.158 0.00 0.00 34.97 5.80
35 36 1.819632 CGGTGCTACTGGATTGGCC 60.820 63.158 0.00 0.00 37.10 5.36
36 37 2.472909 GCGGTGCTACTGGATTGGC 61.473 63.158 0.00 0.00 0.00 4.52
37 38 1.078497 TGCGGTGCTACTGGATTGG 60.078 57.895 0.00 0.00 0.00 3.16
38 39 0.391661 AGTGCGGTGCTACTGGATTG 60.392 55.000 0.00 0.00 0.00 2.67
39 40 0.391661 CAGTGCGGTGCTACTGGATT 60.392 55.000 11.16 0.00 40.38 3.01
40 41 1.219124 CAGTGCGGTGCTACTGGAT 59.781 57.895 11.16 0.00 40.38 3.41
41 42 0.896479 TACAGTGCGGTGCTACTGGA 60.896 55.000 18.54 11.74 46.52 3.86
42 43 0.458543 CTACAGTGCGGTGCTACTGG 60.459 60.000 18.54 5.45 46.52 4.00
44 45 0.526662 GTCTACAGTGCGGTGCTACT 59.473 55.000 0.00 0.00 0.00 2.57
45 46 0.797249 CGTCTACAGTGCGGTGCTAC 60.797 60.000 0.00 0.00 0.00 3.58
46 47 0.956902 TCGTCTACAGTGCGGTGCTA 60.957 55.000 0.00 0.00 0.00 3.49
47 48 2.201436 CTCGTCTACAGTGCGGTGCT 62.201 60.000 0.00 0.00 0.00 4.40
48 49 1.801913 CTCGTCTACAGTGCGGTGC 60.802 63.158 0.00 0.00 0.00 5.01
49 50 0.179187 CTCTCGTCTACAGTGCGGTG 60.179 60.000 0.00 0.00 0.00 4.94
50 51 1.924320 GCTCTCGTCTACAGTGCGGT 61.924 60.000 0.00 0.00 0.00 5.68
51 52 1.226435 GCTCTCGTCTACAGTGCGG 60.226 63.158 0.00 0.00 0.00 5.69
52 53 1.007580 TAGCTCTCGTCTACAGTGCG 58.992 55.000 0.00 0.00 35.86 5.34
53 54 3.701532 ATTAGCTCTCGTCTACAGTGC 57.298 47.619 0.00 0.00 0.00 4.40
54 55 5.503498 GTGTATTAGCTCTCGTCTACAGTG 58.497 45.833 0.00 0.00 0.00 3.66
55 56 4.270566 CGTGTATTAGCTCTCGTCTACAGT 59.729 45.833 0.00 0.00 0.00 3.55
56 57 4.507021 TCGTGTATTAGCTCTCGTCTACAG 59.493 45.833 0.00 0.00 0.00 2.74
57 58 4.269603 GTCGTGTATTAGCTCTCGTCTACA 59.730 45.833 0.00 0.00 0.00 2.74
58 59 4.269603 TGTCGTGTATTAGCTCTCGTCTAC 59.730 45.833 0.00 0.00 0.00 2.59
59 60 4.269603 GTGTCGTGTATTAGCTCTCGTCTA 59.730 45.833 0.00 0.00 0.00 2.59
60 61 3.063725 GTGTCGTGTATTAGCTCTCGTCT 59.936 47.826 0.00 0.00 0.00 4.18
61 62 3.352652 GTGTCGTGTATTAGCTCTCGTC 58.647 50.000 0.00 0.00 0.00 4.20
62 63 2.222976 CGTGTCGTGTATTAGCTCTCGT 60.223 50.000 0.00 0.00 0.00 4.18
63 64 2.364128 CGTGTCGTGTATTAGCTCTCG 58.636 52.381 0.00 0.00 0.00 4.04
64 65 2.110226 GCGTGTCGTGTATTAGCTCTC 58.890 52.381 0.00 0.00 0.00 3.20
65 66 1.471287 TGCGTGTCGTGTATTAGCTCT 59.529 47.619 0.00 0.00 0.00 4.09
66 67 1.904144 TGCGTGTCGTGTATTAGCTC 58.096 50.000 0.00 0.00 0.00 4.09
67 68 2.357327 TTGCGTGTCGTGTATTAGCT 57.643 45.000 0.00 0.00 0.00 3.32
68 69 2.222729 CCTTTGCGTGTCGTGTATTAGC 60.223 50.000 0.00 0.00 0.00 3.09
69 70 2.222729 GCCTTTGCGTGTCGTGTATTAG 60.223 50.000 0.00 0.00 0.00 1.73
70 71 1.727880 GCCTTTGCGTGTCGTGTATTA 59.272 47.619 0.00 0.00 0.00 0.98
71 72 0.515564 GCCTTTGCGTGTCGTGTATT 59.484 50.000 0.00 0.00 0.00 1.89
72 73 2.159181 GCCTTTGCGTGTCGTGTAT 58.841 52.632 0.00 0.00 0.00 2.29
73 74 3.632700 GCCTTTGCGTGTCGTGTA 58.367 55.556 0.00 0.00 0.00 2.90
83 84 0.657840 CAGCTATGTACCGCCTTTGC 59.342 55.000 0.00 0.00 0.00 3.68
84 85 1.933853 GACAGCTATGTACCGCCTTTG 59.066 52.381 0.00 0.00 40.68 2.77
85 86 1.553248 TGACAGCTATGTACCGCCTTT 59.447 47.619 0.00 0.00 40.68 3.11
86 87 1.134788 GTGACAGCTATGTACCGCCTT 60.135 52.381 0.00 0.00 40.68 4.35
87 88 0.460311 GTGACAGCTATGTACCGCCT 59.540 55.000 0.00 0.00 40.68 5.52
88 89 0.870307 CGTGACAGCTATGTACCGCC 60.870 60.000 0.00 0.00 40.68 6.13
89 90 1.480219 GCGTGACAGCTATGTACCGC 61.480 60.000 7.93 7.93 45.39 5.68
90 91 1.200474 CGCGTGACAGCTATGTACCG 61.200 60.000 0.00 0.00 40.68 4.02
91 92 1.480219 GCGCGTGACAGCTATGTACC 61.480 60.000 8.43 0.00 40.68 3.34
92 93 0.525668 AGCGCGTGACAGCTATGTAC 60.526 55.000 8.43 0.00 42.60 2.90
93 94 0.172578 AAGCGCGTGACAGCTATGTA 59.827 50.000 8.43 0.00 43.78 2.29
94 95 0.172578 TAAGCGCGTGACAGCTATGT 59.827 50.000 8.43 0.00 43.78 2.29
95 96 1.491670 ATAAGCGCGTGACAGCTATG 58.508 50.000 8.43 0.00 43.78 2.23
96 97 3.050619 GTTATAAGCGCGTGACAGCTAT 58.949 45.455 8.43 0.00 43.78 2.97
97 98 2.456989 GTTATAAGCGCGTGACAGCTA 58.543 47.619 8.43 0.00 43.78 3.32
98 99 1.278238 GTTATAAGCGCGTGACAGCT 58.722 50.000 8.43 0.00 46.97 4.24
99 100 0.044161 CGTTATAAGCGCGTGACAGC 60.044 55.000 8.43 0.00 0.00 4.40
100 101 0.044161 GCGTTATAAGCGCGTGACAG 60.044 55.000 8.43 0.00 45.36 3.51
101 102 1.992947 GCGTTATAAGCGCGTGACA 59.007 52.632 8.43 0.00 45.36 3.58
102 103 4.845896 GCGTTATAAGCGCGTGAC 57.154 55.556 8.43 0.68 45.36 3.67
108 109 2.308039 GCTCGGGGCGTTATAAGCG 61.308 63.158 0.00 0.00 35.00 4.68
109 110 1.959738 GGCTCGGGGCGTTATAAGC 60.960 63.158 0.00 0.00 42.94 3.09
110 111 1.301479 GGGCTCGGGGCGTTATAAG 60.301 63.158 1.37 0.00 42.94 1.73
111 112 2.035237 CTGGGCTCGGGGCGTTATAA 62.035 60.000 1.37 0.00 42.94 0.98
112 113 2.444329 TGGGCTCGGGGCGTTATA 60.444 61.111 1.37 0.00 42.94 0.98
113 114 3.861797 CTGGGCTCGGGGCGTTAT 61.862 66.667 1.37 0.00 42.94 1.89
164 165 1.221021 GGACCAGGAAACTAGCCCG 59.779 63.158 0.00 0.00 40.21 6.13
190 191 2.032620 ACGGAACACAACAGAGAGACT 58.967 47.619 0.00 0.00 0.00 3.24
191 192 2.510768 ACGGAACACAACAGAGAGAC 57.489 50.000 0.00 0.00 0.00 3.36
192 193 3.454375 GAAACGGAACACAACAGAGAGA 58.546 45.455 0.00 0.00 0.00 3.10
193 194 2.544267 GGAAACGGAACACAACAGAGAG 59.456 50.000 0.00 0.00 0.00 3.20
194 195 2.557317 GGAAACGGAACACAACAGAGA 58.443 47.619 0.00 0.00 0.00 3.10
207 208 2.918230 CCTTCGGGGATCGGAAACGG 62.918 65.000 0.00 0.00 46.90 4.44
210 211 2.587889 GCCTTCGGGGATCGGAAA 59.412 61.111 0.00 0.00 39.77 3.13
211 212 3.845259 CGCCTTCGGGGATCGGAA 61.845 66.667 0.00 0.00 37.91 4.30
212 213 4.826404 TCGCCTTCGGGGATCGGA 62.826 66.667 0.00 0.00 39.75 4.55
213 214 4.286320 CTCGCCTTCGGGGATCGG 62.286 72.222 0.00 0.00 43.58 4.18
214 215 4.951963 GCTCGCCTTCGGGGATCG 62.952 72.222 0.00 0.00 43.58 3.69
266 268 2.949705 GATTGCGAGGGGGAGAAGGC 62.950 65.000 0.00 0.00 0.00 4.35
300 302 3.166489 CCGCGGAGGAATATAGAATCC 57.834 52.381 24.07 0.00 45.00 3.01
370 383 2.464459 GGAACAGATTGCCGCGGAG 61.464 63.158 33.48 12.83 0.00 4.63
378 391 2.128035 GGCTACGATCGGAACAGATTG 58.872 52.381 20.98 0.00 37.88 2.67
382 395 4.732106 GGGCTACGATCGGAACAG 57.268 61.111 20.98 11.46 0.00 3.16
400 413 1.576356 GGATGGATGAGACGCAGAAC 58.424 55.000 0.00 0.00 0.00 3.01
449 468 0.107800 GGAGGGGGAAAGTCGCTTAC 60.108 60.000 0.00 0.00 0.00 2.34
466 485 1.207811 TCTGCTGCAATCAATCGAGGA 59.792 47.619 3.02 0.00 0.00 3.71
467 486 1.598132 CTCTGCTGCAATCAATCGAGG 59.402 52.381 3.02 0.00 0.00 4.63
469 488 1.012086 GCTCTGCTGCAATCAATCGA 58.988 50.000 3.02 0.00 0.00 3.59
470 489 0.315951 CGCTCTGCTGCAATCAATCG 60.316 55.000 3.02 0.00 0.00 3.34
471 490 1.012086 TCGCTCTGCTGCAATCAATC 58.988 50.000 3.02 0.00 0.00 2.67
472 491 0.731417 GTCGCTCTGCTGCAATCAAT 59.269 50.000 3.02 0.00 0.00 2.57
623 673 2.173143 AGTTCCAACACTACCCCGAAAA 59.827 45.455 0.00 0.00 0.00 2.29
627 677 0.321298 CCAGTTCCAACACTACCCCG 60.321 60.000 0.00 0.00 0.00 5.73
628 678 1.061546 TCCAGTTCCAACACTACCCC 58.938 55.000 0.00 0.00 0.00 4.95
729 782 9.100554 CACCGGTACAGTTATTTATTCATTACA 57.899 33.333 6.87 0.00 0.00 2.41
730 783 9.316730 TCACCGGTACAGTTATTTATTCATTAC 57.683 33.333 6.87 0.00 0.00 1.89
732 785 8.836413 CATCACCGGTACAGTTATTTATTCATT 58.164 33.333 6.87 0.00 0.00 2.57
769 822 3.617706 TCGAAACTTTACAGCGAAACACA 59.382 39.130 0.00 0.00 0.00 3.72
802 855 5.105351 GGATCCGAACCAAAATTTCAGGATT 60.105 40.000 14.58 6.81 36.93 3.01
879 932 3.242739 ACAATATCGCAATTCTCCGCAAC 60.243 43.478 0.00 0.00 0.00 4.17
883 936 5.845985 ATGTACAATATCGCAATTCTCCG 57.154 39.130 0.00 0.00 0.00 4.63
892 945 6.519761 CCGCATAAGAAAATGTACAATATCGC 59.480 38.462 0.00 0.00 0.00 4.58
897 950 5.835113 AGCCGCATAAGAAAATGTACAAT 57.165 34.783 0.00 0.00 0.00 2.71
908 961 5.529800 GGGAAACTATTTAAGCCGCATAAGA 59.470 40.000 0.00 0.00 0.00 2.10
916 969 6.602278 AGTATGAGGGGAAACTATTTAAGCC 58.398 40.000 0.00 0.00 0.00 4.35
920 973 5.601313 AGCGAGTATGAGGGGAAACTATTTA 59.399 40.000 0.00 0.00 0.00 1.40
958 1011 4.771054 TCTACTTCTCTTGGACCTGTTACC 59.229 45.833 0.00 0.00 0.00 2.85
959 1012 5.979288 TCTACTTCTCTTGGACCTGTTAC 57.021 43.478 0.00 0.00 0.00 2.50
1149 1230 4.728534 GCACCAAGCATACAAATACGAAA 58.271 39.130 0.00 0.00 44.79 3.46
1281 1365 4.569943 TGGTCAGACTAGCAATGACTTTC 58.430 43.478 17.26 6.50 42.36 2.62
1282 1366 4.623932 TGGTCAGACTAGCAATGACTTT 57.376 40.909 17.26 0.00 42.36 2.66
1426 1532 7.417116 CCCAGTTCACGTAGGTGTATTACTAAT 60.417 40.741 14.78 0.00 44.68 1.73
1427 1533 6.127647 CCCAGTTCACGTAGGTGTATTACTAA 60.128 42.308 14.78 0.00 44.68 2.24
1428 1534 5.357878 CCCAGTTCACGTAGGTGTATTACTA 59.642 44.000 14.78 0.00 44.68 1.82
1429 1535 4.159135 CCCAGTTCACGTAGGTGTATTACT 59.841 45.833 14.78 11.02 44.68 2.24
1430 1536 4.158394 TCCCAGTTCACGTAGGTGTATTAC 59.842 45.833 14.78 9.26 44.68 1.89
1431 1537 4.343231 TCCCAGTTCACGTAGGTGTATTA 58.657 43.478 14.78 0.00 44.68 0.98
1432 1538 3.167485 TCCCAGTTCACGTAGGTGTATT 58.833 45.455 14.78 0.12 44.68 1.89
1433 1539 2.811410 TCCCAGTTCACGTAGGTGTAT 58.189 47.619 14.78 0.56 44.68 2.29
1439 1545 0.249398 CCCCTTCCCAGTTCACGTAG 59.751 60.000 0.00 0.00 0.00 3.51
1701 1921 3.325293 ACTACTGTGGCATCTGTTCAG 57.675 47.619 0.00 0.00 0.00 3.02
1749 1969 7.660030 AAATTTGGGTTAGCTAAGCATATGT 57.340 32.000 30.78 15.97 35.51 2.29
2143 2363 5.720202 AGTCAACAATATGAAGCTACGACA 58.280 37.500 0.00 0.00 0.00 4.35
2481 2701 3.944055 AGAGTAGCATTCTTGACACGT 57.056 42.857 0.00 0.00 0.00 4.49
2648 2868 6.697892 GCGACTTTAATAGACAACTCTAGCAT 59.302 38.462 0.00 0.00 32.24 3.79
3037 3260 7.307989 CCCAGGTTTATCTGCAGATATAAAACG 60.308 40.741 31.73 22.57 39.28 3.60
3046 3269 4.721776 ACTATTCCCAGGTTTATCTGCAGA 59.278 41.667 20.79 20.79 33.64 4.26
3047 3270 5.041191 ACTATTCCCAGGTTTATCTGCAG 57.959 43.478 7.63 7.63 33.64 4.41
3048 3271 5.450818 AACTATTCCCAGGTTTATCTGCA 57.549 39.130 0.00 0.00 33.64 4.41
3049 3272 5.885912 TCAAACTATTCCCAGGTTTATCTGC 59.114 40.000 0.00 0.00 32.80 4.26
3050 3273 6.884295 TGTCAAACTATTCCCAGGTTTATCTG 59.116 38.462 0.00 0.00 32.80 2.90
3051 3274 7.027874 TGTCAAACTATTCCCAGGTTTATCT 57.972 36.000 0.00 0.00 32.80 1.98
3052 3275 7.013369 GGATGTCAAACTATTCCCAGGTTTATC 59.987 40.741 0.00 0.00 32.80 1.75
3053 3276 6.833933 GGATGTCAAACTATTCCCAGGTTTAT 59.166 38.462 0.00 0.00 32.80 1.40
3176 3399 0.743097 GGGTTGAATGGAGAGCATGC 59.257 55.000 10.51 10.51 0.00 4.06
3189 3412 0.105246 AATGGTTTGGGCTGGGTTGA 60.105 50.000 0.00 0.00 0.00 3.18
3214 3437 5.543405 TGAATCTGTGGGTTCAATCCAAATT 59.457 36.000 0.00 0.00 35.86 1.82
3215 3438 5.085920 TGAATCTGTGGGTTCAATCCAAAT 58.914 37.500 0.00 0.00 35.86 2.32
3257 3482 1.637553 AGATTCATGGAGTGCCCTGTT 59.362 47.619 0.00 0.00 35.38 3.16
3267 3492 4.160439 ACGAGCTTTGACTAGATTCATGGA 59.840 41.667 0.00 0.00 0.00 3.41
3358 3596 2.810274 ACTCGTACGTGTTTGCTCTCTA 59.190 45.455 16.65 0.00 0.00 2.43
3411 3649 2.939103 GCTACAAAATCGATCAGCCTGT 59.061 45.455 0.00 0.96 0.00 4.00
3416 3654 1.933181 TGCGGCTACAAAATCGATCAG 59.067 47.619 0.00 0.00 0.00 2.90
3500 3751 4.898765 TTGCTGCTGCTGCCCACA 62.899 61.111 25.44 7.07 40.48 4.17
3501 3752 3.379445 ATTGCTGCTGCTGCCCAC 61.379 61.111 25.44 3.03 40.48 4.61
3502 3753 3.378602 CATTGCTGCTGCTGCCCA 61.379 61.111 25.44 14.47 40.48 5.36
3503 3754 3.352338 GACATTGCTGCTGCTGCCC 62.352 63.158 25.44 4.84 40.48 5.36
3518 3777 0.038983 TTCAAAGACGCGATCGGACA 60.039 50.000 15.93 0.00 40.69 4.02
3534 3793 0.178992 CCACCTCCAGCCAAACTTCA 60.179 55.000 0.00 0.00 0.00 3.02
3560 3821 1.226974 GATTAGTCTGAGCCGCGCA 60.227 57.895 8.75 0.00 0.00 6.09
3629 3890 3.399952 TTAGGTTTGGGTTGGGTTCAA 57.600 42.857 0.00 0.00 0.00 2.69
3700 3992 6.827762 AGTTTTTGGATTGGCTTTTGATTTGA 59.172 30.769 0.00 0.00 0.00 2.69
3782 4074 8.877864 TCCTTTGTTTTCTATACATCCATTGT 57.122 30.769 0.00 0.00 42.62 2.71
3786 4078 8.698973 TTGTTCCTTTGTTTTCTATACATCCA 57.301 30.769 0.00 0.00 0.00 3.41
4090 4393 0.389817 TCGGTCTGCAGGAATGAACG 60.390 55.000 15.13 9.07 41.62 3.95
4095 4398 1.741770 GCGTTCGGTCTGCAGGAAT 60.742 57.895 15.13 0.00 0.00 3.01
4237 4540 5.163652 CGAGTTGGTCATAGTGACTGATGTA 60.164 44.000 9.66 0.00 46.19 2.29
4277 4580 7.665559 TCCAACAATACTTTGAAGCAGACTAAT 59.334 33.333 0.00 0.00 36.64 1.73
4450 4756 0.787084 TTTGGGCCCTTACCATCCAA 59.213 50.000 25.70 1.57 37.93 3.53
4530 4836 3.557228 TGCTGATTTGCCCTTTTGTTT 57.443 38.095 0.00 0.00 0.00 2.83
4581 4887 1.781025 TTCCTGTTTTCTGGCGCGTG 61.781 55.000 8.43 0.00 38.56 5.34
4676 4982 8.939929 CAGTAGAGAAAAAGAGCATATGAACAA 58.060 33.333 6.97 0.00 0.00 2.83
4747 5055 1.672881 CAGCATCCGGAATTTGTCTCC 59.327 52.381 9.01 0.00 0.00 3.71
4748 5056 2.632377 TCAGCATCCGGAATTTGTCTC 58.368 47.619 9.01 0.00 0.00 3.36
4804 5112 9.696917 CAGAACTGGTTAGCTTTAAATGAAAAT 57.303 29.630 0.00 0.00 0.00 1.82
4807 5115 7.817418 ACAGAACTGGTTAGCTTTAAATGAA 57.183 32.000 6.76 0.00 34.19 2.57
4808 5116 8.946085 CATACAGAACTGGTTAGCTTTAAATGA 58.054 33.333 6.76 0.00 34.19 2.57
4809 5117 8.946085 TCATACAGAACTGGTTAGCTTTAAATG 58.054 33.333 6.76 0.00 34.19 2.32
4810 5118 8.947115 GTCATACAGAACTGGTTAGCTTTAAAT 58.053 33.333 6.76 0.00 34.19 1.40
4812 5120 7.446769 TGTCATACAGAACTGGTTAGCTTTAA 58.553 34.615 6.76 0.00 34.19 1.52
4813 5121 6.999950 TGTCATACAGAACTGGTTAGCTTTA 58.000 36.000 6.76 0.00 34.19 1.85
4815 5123 5.483685 TGTCATACAGAACTGGTTAGCTT 57.516 39.130 6.76 0.00 34.19 3.74
4816 5124 5.683876 ATGTCATACAGAACTGGTTAGCT 57.316 39.130 6.76 0.00 34.19 3.32
4817 5125 6.595716 AGAAATGTCATACAGAACTGGTTAGC 59.404 38.462 6.76 0.00 34.19 3.09
4818 5126 7.604164 ACAGAAATGTCATACAGAACTGGTTAG 59.396 37.037 6.76 0.00 33.19 2.34
4819 5127 7.450074 ACAGAAATGTCATACAGAACTGGTTA 58.550 34.615 6.76 0.00 33.19 2.85
4820 5128 6.299141 ACAGAAATGTCATACAGAACTGGTT 58.701 36.000 6.76 0.00 33.19 3.67
4821 5129 5.869579 ACAGAAATGTCATACAGAACTGGT 58.130 37.500 6.76 0.00 33.19 4.00
4825 5133 9.424319 TCTTCTTACAGAAATGTCATACAGAAC 57.576 33.333 0.00 0.00 33.19 3.01
4865 5173 9.764363 TGAATAGAAATCAGCAACTACGATTAT 57.236 29.630 0.00 0.00 0.00 1.28
4876 5184 5.345702 GCAGCAATTGAATAGAAATCAGCA 58.654 37.500 10.34 0.00 0.00 4.41
4923 5231 0.898320 CTTCCTTCTTCGGAGGCTCA 59.102 55.000 17.69 0.00 33.89 4.26
4980 5288 0.179205 GCAGCAGCTAACGCTTCAAG 60.179 55.000 0.00 0.00 46.47 3.02
5012 5320 1.679139 TGCTTGGAAGTTGTCACTGG 58.321 50.000 0.00 0.00 31.60 4.00
5016 5324 2.886523 CCATCTTGCTTGGAAGTTGTCA 59.113 45.455 10.48 0.00 36.26 3.58
5025 5333 1.098050 GCTACCACCATCTTGCTTGG 58.902 55.000 0.00 0.00 40.26 3.61
5027 5335 1.352352 ACAGCTACCACCATCTTGCTT 59.648 47.619 0.00 0.00 0.00 3.91
5028 5336 0.987294 ACAGCTACCACCATCTTGCT 59.013 50.000 0.00 0.00 0.00 3.91
5029 5337 2.093447 ACTACAGCTACCACCATCTTGC 60.093 50.000 0.00 0.00 0.00 4.01
5030 5338 3.195610 TCACTACAGCTACCACCATCTTG 59.804 47.826 0.00 0.00 0.00 3.02
5031 5339 3.441101 TCACTACAGCTACCACCATCTT 58.559 45.455 0.00 0.00 0.00 2.40
5032 5340 3.101643 TCACTACAGCTACCACCATCT 57.898 47.619 0.00 0.00 0.00 2.90
5035 5343 2.561419 GAGTTCACTACAGCTACCACCA 59.439 50.000 0.00 0.00 0.00 4.17
5036 5344 2.826725 AGAGTTCACTACAGCTACCACC 59.173 50.000 0.00 0.00 0.00 4.61
5114 5455 4.624024 CGAGCTAAACCGTTTATCACTTCA 59.376 41.667 4.19 0.00 0.00 3.02
5152 5493 6.486253 TGAGAAATGATTGTGCTACTTGAC 57.514 37.500 0.00 0.00 0.00 3.18
5161 5502 6.203145 TGGCAAATTGTTGAGAAATGATTGTG 59.797 34.615 0.00 0.00 36.83 3.33
5217 5558 4.567558 GTCTGAGAGCAATTGATGAGACTG 59.432 45.833 10.34 0.00 29.63 3.51
5304 5645 3.324930 CCTGCCTGCCACTGAGGA 61.325 66.667 0.00 0.00 41.22 3.71
5336 5677 4.335874 ACATTGATTGCTCAAGCTCATCTC 59.664 41.667 3.32 0.00 44.32 2.75
5403 5746 4.393155 CAGCACGCTGCCAGGGTA 62.393 66.667 14.55 0.00 46.52 3.69
5450 5793 1.599071 CATGCGTATACTGTTGGCCTG 59.401 52.381 3.32 0.00 0.00 4.85
5490 5833 1.001597 AGAAGTCCAGAACGACGACAC 60.002 52.381 0.00 0.00 37.85 3.67
5511 5854 1.080772 CTACTGACGCCGAAGCACA 60.081 57.895 0.00 0.00 39.83 4.57
5534 5877 4.879598 TCATCTCATCAGTGGATCAATCG 58.120 43.478 0.00 0.00 0.00 3.34
5552 5895 7.752686 GCAGGTCAAAAGATAGTTTTCTTCATC 59.247 37.037 0.00 0.00 34.89 2.92
5553 5896 7.573843 CGCAGGTCAAAAGATAGTTTTCTTCAT 60.574 37.037 0.00 0.00 34.89 2.57
5554 5897 6.293407 CGCAGGTCAAAAGATAGTTTTCTTCA 60.293 38.462 0.00 0.00 34.89 3.02
5555 5898 6.073222 TCGCAGGTCAAAAGATAGTTTTCTTC 60.073 38.462 0.00 0.00 34.89 2.87
5556 5899 5.763204 TCGCAGGTCAAAAGATAGTTTTCTT 59.237 36.000 0.00 0.00 37.56 2.52
5634 5977 6.345920 ACAGACAAGAAGAAAAACGTGTAG 57.654 37.500 0.00 0.00 0.00 2.74
5637 5980 4.263800 CGACAGACAAGAAGAAAAACGTG 58.736 43.478 0.00 0.00 0.00 4.49
5638 5981 3.242316 GCGACAGACAAGAAGAAAAACGT 60.242 43.478 0.00 0.00 0.00 3.99
5639 5982 3.001330 AGCGACAGACAAGAAGAAAAACG 59.999 43.478 0.00 0.00 0.00 3.60
5640 5983 4.034048 TCAGCGACAGACAAGAAGAAAAAC 59.966 41.667 0.00 0.00 0.00 2.43
5645 5990 3.667497 ATTCAGCGACAGACAAGAAGA 57.333 42.857 0.00 0.00 0.00 2.87
5648 5993 2.224079 GCAAATTCAGCGACAGACAAGA 59.776 45.455 0.00 0.00 0.00 3.02
5659 6004 2.997485 AAAGACTCGGCAAATTCAGC 57.003 45.000 0.00 0.00 0.00 4.26
5665 6010 4.330944 TCTTCAGTAAAGACTCGGCAAA 57.669 40.909 0.00 0.00 39.12 3.68
5668 6013 4.056050 TGTTTCTTCAGTAAAGACTCGGC 58.944 43.478 0.00 0.00 43.75 5.54
5699 6044 5.782925 AGTAGTTGGAGTCCTGGAGATATT 58.217 41.667 11.33 0.00 0.00 1.28
5715 6060 1.407437 CCCAGCTAGGCCAAGTAGTTG 60.407 57.143 5.01 6.44 35.39 3.16
5716 6061 0.912486 CCCAGCTAGGCCAAGTAGTT 59.088 55.000 5.01 0.00 35.39 2.24
5737 6082 2.418746 GGAGCTTTCAATACCGAGAGCA 60.419 50.000 6.28 0.00 43.69 4.26
5743 6088 1.867233 CATCCGGAGCTTTCAATACCG 59.133 52.381 11.34 0.00 42.67 4.02
5768 6113 2.628178 TCTCGGCGGAGTATCATTTCAT 59.372 45.455 19.51 0.00 41.26 2.57
5779 6124 3.610669 CCCTGGATCTCGGCGGAG 61.611 72.222 14.80 14.80 41.89 4.63
5810 6156 1.215140 TGATGGATGATGGGTGCTGA 58.785 50.000 0.00 0.00 0.00 4.26
5818 6164 1.197036 GCAGCGTGATGATGGATGATG 59.803 52.381 0.00 0.00 33.55 3.07
5819 6165 1.520494 GCAGCGTGATGATGGATGAT 58.480 50.000 0.00 0.00 33.55 2.45
5820 6166 0.533531 GGCAGCGTGATGATGGATGA 60.534 55.000 0.00 0.00 33.55 2.92
5841 6187 0.808755 GGTACAAAATGGCAGGACCG 59.191 55.000 0.00 0.00 43.94 4.79
5860 6206 2.675317 GCAAGGGACTAGTGTAGCTGTG 60.675 54.545 0.00 0.00 38.49 3.66
5870 6216 3.634910 GTCTAGGAAGAGCAAGGGACTAG 59.365 52.174 0.00 0.00 31.31 2.57
5871 6217 3.633418 GTCTAGGAAGAGCAAGGGACTA 58.367 50.000 0.00 0.00 31.31 2.59
5872 6218 2.462723 GTCTAGGAAGAGCAAGGGACT 58.537 52.381 0.00 0.00 32.81 3.85
5873 6219 2.971660 GTCTAGGAAGAGCAAGGGAC 57.028 55.000 0.00 0.00 30.45 4.46
5945 6292 2.356135 CGGTTTCAGGTTCACCCTATG 58.644 52.381 0.00 0.00 43.86 2.23
5947 6294 0.035739 GCGGTTTCAGGTTCACCCTA 59.964 55.000 0.00 0.00 43.86 3.53
5949 6296 2.613506 CGCGGTTTCAGGTTCACCC 61.614 63.158 0.00 0.00 36.42 4.61
5950 6297 2.943653 CGCGGTTTCAGGTTCACC 59.056 61.111 0.00 0.00 0.00 4.02
5967 6365 0.600057 CCTTCTTTCACAAGCAGGGC 59.400 55.000 0.00 0.00 39.21 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.