Multiple sequence alignment - TraesCS2A01G397000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G397000 chr2A 100.000 5270 0 0 1 5270 650633928 650628659 0.000000e+00 9732
1 TraesCS2A01G397000 chr2A 91.413 361 29 2 128 487 425804673 425804314 1.320000e-135 494
2 TraesCS2A01G397000 chr2B 92.819 4540 205 66 489 4977 593662060 593657591 0.000000e+00 6466
3 TraesCS2A01G397000 chr2B 95.385 260 12 0 5011 5270 593656716 593656457 1.060000e-111 414
4 TraesCS2A01G397000 chr2B 97.600 125 3 0 5 129 593662181 593662057 1.150000e-51 215
5 TraesCS2A01G397000 chr2D 93.289 4247 191 47 489 4700 506151366 506147179 0.000000e+00 6178
6 TraesCS2A01G397000 chr2D 93.174 293 15 3 4983 5270 506145908 506145616 4.880000e-115 425
7 TraesCS2A01G397000 chr2D 96.899 129 2 2 1 129 506151489 506151363 1.150000e-51 215
8 TraesCS2A01G397000 chr2D 81.034 290 19 21 4702 4977 506147106 506146839 1.160000e-46 198
9 TraesCS2A01G397000 chr1B 97.541 366 9 0 126 491 648692613 648692978 1.250000e-175 627
10 TraesCS2A01G397000 chr4B 96.739 368 11 1 121 488 435130990 435130624 3.490000e-171 612
11 TraesCS2A01G397000 chr4B 89.807 363 34 2 128 487 345810357 345810719 3.720000e-126 462
12 TraesCS2A01G397000 chr5B 96.712 365 12 0 125 489 642132381 642132745 4.510000e-170 608
13 TraesCS2A01G397000 chr5B 86.170 94 13 0 1288 1381 136631204 136631111 9.340000e-18 102
14 TraesCS2A01G397000 chr6B 95.924 368 13 1 126 491 78694351 78694718 3.510000e-166 595
15 TraesCS2A01G397000 chr7B 95.664 369 16 0 126 494 177977526 177977158 1.260000e-165 593
16 TraesCS2A01G397000 chr3D 91.582 297 25 0 128 424 210530261 210530557 1.370000e-110 411
17 TraesCS2A01G397000 chr3D 84.956 113 15 2 1287 1397 604565904 604565792 4.310000e-21 113
18 TraesCS2A01G397000 chr3A 90.164 305 26 4 128 430 276109062 276108760 1.380000e-105 394
19 TraesCS2A01G397000 chr3A 84.956 113 15 2 1287 1397 734443575 734443463 4.310000e-21 113
20 TraesCS2A01G397000 chr5A 80.986 142 18 6 1245 1381 137282451 137282314 2.600000e-18 104
21 TraesCS2A01G397000 chr5D 80.714 140 19 5 1246 1381 123888245 123888110 9.340000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G397000 chr2A 650628659 650633928 5269 True 9732 9732 100.000 1 5270 1 chr2A.!!$R2 5269
1 TraesCS2A01G397000 chr2B 593656457 593662181 5724 True 2365 6466 95.268 5 5270 3 chr2B.!!$R1 5265
2 TraesCS2A01G397000 chr2D 506145616 506151489 5873 True 1754 6178 91.099 1 5270 4 chr2D.!!$R1 5269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 850 0.041833 ATCCCTCGGATCGGATGGAT 59.958 55.0 25.01 25.01 38.09 3.41 F
840 851 0.178932 TCCCTCGGATCGGATGGATT 60.179 55.0 19.13 0.00 34.82 3.01 F
1771 1799 0.871722 TCATTTCAAGCGGAACACGG 59.128 50.0 0.00 0.00 44.51 4.94 F
2143 2174 0.469144 TTTTTGGGTGAGGGCTGGTC 60.469 55.0 0.00 0.00 0.00 4.02 F
3188 3231 0.518636 GTGAGCGCAATTTCTCTGCA 59.481 50.0 11.47 0.00 39.91 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 2108 0.466922 CCCACTCCTTGGCATGGATC 60.467 60.0 21.04 0.00 45.37 3.36 R
2122 2153 0.609662 CCAGCCCTCACCCAAAAATG 59.390 55.0 0.00 0.00 0.00 2.32 R
3666 3717 0.101759 GGTTAGTGTATGCTCGCGGA 59.898 55.0 6.13 0.00 0.00 5.54 R
3669 3720 0.177141 TGGGGTTAGTGTATGCTCGC 59.823 55.0 0.00 0.00 0.00 5.03 R
4923 5072 0.387565 TGCCATGCTGCATGCTTATG 59.612 50.0 31.84 20.61 40.20 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 4.770874 CGGGGCACGTGGTAAGGG 62.771 72.222 18.88 0.00 37.93 3.95
132 133 4.338710 GGGCACGTGGTAAGGGCA 62.339 66.667 18.88 0.00 0.00 5.36
133 134 2.045340 GGCACGTGGTAAGGGCAT 60.045 61.111 18.88 0.00 0.00 4.40
134 135 2.112815 GGCACGTGGTAAGGGCATC 61.113 63.158 18.88 0.00 0.00 3.91
135 136 2.112815 GCACGTGGTAAGGGCATCC 61.113 63.158 18.88 0.00 0.00 3.51
136 137 1.298340 CACGTGGTAAGGGCATCCA 59.702 57.895 7.95 0.00 34.83 3.41
137 138 1.024579 CACGTGGTAAGGGCATCCAC 61.025 60.000 7.95 0.29 45.46 4.02
141 142 2.142356 TGGTAAGGGCATCCACAATG 57.858 50.000 0.00 0.00 38.50 2.82
142 143 1.341877 TGGTAAGGGCATCCACAATGG 60.342 52.381 0.00 0.00 39.43 3.16
143 144 1.341976 GGTAAGGGCATCCACAATGGT 60.342 52.381 0.00 0.00 39.03 3.55
144 145 2.456577 GTAAGGGCATCCACAATGGTT 58.543 47.619 0.00 0.00 39.03 3.67
145 146 1.269012 AAGGGCATCCACAATGGTTG 58.731 50.000 2.13 2.13 39.60 3.77
146 147 0.615544 AGGGCATCCACAATGGTTGG 60.616 55.000 7.79 0.00 37.62 3.77
147 148 0.614415 GGGCATCCACAATGGTTGGA 60.614 55.000 7.79 0.00 37.62 3.53
148 149 0.819582 GGCATCCACAATGGTTGGAG 59.180 55.000 7.79 0.00 37.62 3.86
149 150 0.819582 GCATCCACAATGGTTGGAGG 59.180 55.000 7.79 0.87 37.62 4.30
150 151 0.819582 CATCCACAATGGTTGGAGGC 59.180 55.000 0.00 0.00 39.03 4.70
151 152 0.409092 ATCCACAATGGTTGGAGGCA 59.591 50.000 0.00 0.00 39.03 4.75
152 153 0.251297 TCCACAATGGTTGGAGGCAG 60.251 55.000 0.00 0.00 39.03 4.85
153 154 1.588082 CACAATGGTTGGAGGCAGC 59.412 57.895 0.00 0.00 34.12 5.25
154 155 1.153524 ACAATGGTTGGAGGCAGCA 59.846 52.632 0.00 0.00 34.12 4.41
155 156 0.251922 ACAATGGTTGGAGGCAGCAT 60.252 50.000 0.00 0.00 33.74 3.79
156 157 0.899720 CAATGGTTGGAGGCAGCATT 59.100 50.000 0.00 0.00 41.87 3.56
157 158 0.899720 AATGGTTGGAGGCAGCATTG 59.100 50.000 0.00 0.00 40.12 2.82
167 168 2.791170 GCAGCATTGCCTCTAAGCT 58.209 52.632 4.70 0.00 44.74 3.74
169 170 1.022735 CAGCATTGCCTCTAAGCTGG 58.977 55.000 4.70 0.00 46.55 4.85
170 171 0.106819 AGCATTGCCTCTAAGCTGGG 60.107 55.000 4.70 0.00 33.67 4.45
171 172 1.105759 GCATTGCCTCTAAGCTGGGG 61.106 60.000 0.00 0.00 0.00 4.96
172 173 0.257039 CATTGCCTCTAAGCTGGGGT 59.743 55.000 0.00 0.00 0.00 4.95
173 174 0.548510 ATTGCCTCTAAGCTGGGGTC 59.451 55.000 0.00 0.00 0.00 4.46
174 175 1.562672 TTGCCTCTAAGCTGGGGTCC 61.563 60.000 0.00 0.00 0.00 4.46
175 176 1.995626 GCCTCTAAGCTGGGGTCCA 60.996 63.158 0.00 0.00 0.00 4.02
176 177 1.908483 CCTCTAAGCTGGGGTCCAC 59.092 63.158 0.00 0.00 0.00 4.02
177 178 0.909610 CCTCTAAGCTGGGGTCCACA 60.910 60.000 0.00 0.00 0.00 4.17
178 179 1.207791 CTCTAAGCTGGGGTCCACAT 58.792 55.000 0.00 0.00 0.00 3.21
179 180 1.561542 CTCTAAGCTGGGGTCCACATT 59.438 52.381 0.00 0.00 0.00 2.71
180 181 1.281867 TCTAAGCTGGGGTCCACATTG 59.718 52.381 0.00 0.00 0.00 2.82
181 182 0.323360 TAAGCTGGGGTCCACATTGC 60.323 55.000 0.00 0.00 0.00 3.56
182 183 2.036256 GCTGGGGTCCACATTGCT 59.964 61.111 0.00 0.00 0.00 3.91
183 184 2.345760 GCTGGGGTCCACATTGCTG 61.346 63.158 0.00 0.00 0.00 4.41
184 185 2.283101 TGGGGTCCACATTGCTGC 60.283 61.111 0.00 0.00 0.00 5.25
185 186 3.070576 GGGGTCCACATTGCTGCC 61.071 66.667 0.00 0.00 0.00 4.85
186 187 2.036256 GGGTCCACATTGCTGCCT 59.964 61.111 0.00 0.00 0.00 4.75
187 188 2.048603 GGGTCCACATTGCTGCCTC 61.049 63.158 0.00 0.00 0.00 4.70
188 189 1.001641 GGTCCACATTGCTGCCTCT 60.002 57.895 0.00 0.00 0.00 3.69
189 190 0.253044 GGTCCACATTGCTGCCTCTA 59.747 55.000 0.00 0.00 0.00 2.43
190 191 1.340017 GGTCCACATTGCTGCCTCTAA 60.340 52.381 0.00 0.00 0.00 2.10
191 192 2.012673 GTCCACATTGCTGCCTCTAAG 58.987 52.381 0.00 0.00 0.00 2.18
192 193 1.065199 TCCACATTGCTGCCTCTAAGG 60.065 52.381 0.00 0.00 38.80 2.69
193 194 1.340405 CCACATTGCTGCCTCTAAGGT 60.340 52.381 0.00 0.00 37.80 3.50
194 195 2.440409 CACATTGCTGCCTCTAAGGTT 58.560 47.619 0.00 0.00 37.80 3.50
195 196 3.609853 CACATTGCTGCCTCTAAGGTTA 58.390 45.455 0.00 0.00 37.80 2.85
196 197 3.624861 CACATTGCTGCCTCTAAGGTTAG 59.375 47.826 0.00 0.00 37.80 2.34
197 198 3.264450 ACATTGCTGCCTCTAAGGTTAGT 59.736 43.478 0.00 0.00 37.80 2.24
198 199 3.611766 TTGCTGCCTCTAAGGTTAGTC 57.388 47.619 0.00 0.00 37.80 2.59
199 200 2.536066 TGCTGCCTCTAAGGTTAGTCA 58.464 47.619 0.00 0.00 37.80 3.41
200 201 2.903784 TGCTGCCTCTAAGGTTAGTCAA 59.096 45.455 0.00 0.00 37.80 3.18
201 202 3.326588 TGCTGCCTCTAAGGTTAGTCAAA 59.673 43.478 0.00 0.00 37.80 2.69
202 203 4.202419 TGCTGCCTCTAAGGTTAGTCAAAA 60.202 41.667 0.00 0.00 37.80 2.44
203 204 4.760204 GCTGCCTCTAAGGTTAGTCAAAAA 59.240 41.667 0.00 0.00 37.80 1.94
204 205 5.416013 GCTGCCTCTAAGGTTAGTCAAAAAT 59.584 40.000 0.00 0.00 37.80 1.82
205 206 6.623767 GCTGCCTCTAAGGTTAGTCAAAAATG 60.624 42.308 0.00 0.00 37.80 2.32
206 207 5.183140 TGCCTCTAAGGTTAGTCAAAAATGC 59.817 40.000 0.00 0.00 37.80 3.56
207 208 5.416013 GCCTCTAAGGTTAGTCAAAAATGCT 59.584 40.000 0.00 0.00 37.80 3.79
208 209 6.623767 GCCTCTAAGGTTAGTCAAAAATGCTG 60.624 42.308 0.00 0.00 37.80 4.41
209 210 6.254281 TCTAAGGTTAGTCAAAAATGCTGC 57.746 37.500 0.00 0.00 32.61 5.25
210 211 4.935352 AAGGTTAGTCAAAAATGCTGCA 57.065 36.364 4.13 4.13 0.00 4.41
211 212 4.935352 AGGTTAGTCAAAAATGCTGCAA 57.065 36.364 6.36 0.00 0.00 4.08
212 213 5.473066 AGGTTAGTCAAAAATGCTGCAAT 57.527 34.783 6.36 0.00 0.00 3.56
213 214 5.232463 AGGTTAGTCAAAAATGCTGCAATG 58.768 37.500 6.36 4.12 0.00 2.82
214 215 4.990426 GGTTAGTCAAAAATGCTGCAATGT 59.010 37.500 6.36 0.00 0.00 2.71
215 216 6.015519 AGGTTAGTCAAAAATGCTGCAATGTA 60.016 34.615 6.36 0.00 0.00 2.29
216 217 6.813152 GGTTAGTCAAAAATGCTGCAATGTAT 59.187 34.615 6.36 0.00 0.00 2.29
217 218 7.201461 GGTTAGTCAAAAATGCTGCAATGTATG 60.201 37.037 6.36 3.01 0.00 2.39
218 219 5.172934 AGTCAAAAATGCTGCAATGTATGG 58.827 37.500 6.36 0.00 0.00 2.74
219 220 3.933955 TCAAAAATGCTGCAATGTATGGC 59.066 39.130 6.36 0.00 0.00 4.40
220 221 3.613494 AAAATGCTGCAATGTATGGCA 57.387 38.095 6.36 0.00 38.52 4.92
221 222 3.830744 AAATGCTGCAATGTATGGCAT 57.169 38.095 6.36 4.88 44.09 4.40
223 224 3.830744 ATGCTGCAATGTATGGCATTT 57.169 38.095 6.36 0.00 44.82 2.32
224 225 2.894902 TGCTGCAATGTATGGCATTTG 58.105 42.857 4.78 5.60 44.82 2.32
225 226 2.496470 TGCTGCAATGTATGGCATTTGA 59.504 40.909 4.78 0.00 44.82 2.69
226 227 3.120792 GCTGCAATGTATGGCATTTGAG 58.879 45.455 4.78 5.58 44.82 3.02
227 228 3.429822 GCTGCAATGTATGGCATTTGAGT 60.430 43.478 4.78 0.00 44.82 3.41
228 229 4.109766 CTGCAATGTATGGCATTTGAGTG 58.890 43.478 4.78 0.69 44.82 3.51
229 230 2.861935 GCAATGTATGGCATTTGAGTGC 59.138 45.455 4.78 7.49 44.82 4.40
230 231 3.676598 GCAATGTATGGCATTTGAGTGCA 60.677 43.478 4.78 0.00 44.82 4.57
231 232 4.109766 CAATGTATGGCATTTGAGTGCAG 58.890 43.478 4.78 0.00 44.82 4.41
232 233 1.473677 TGTATGGCATTTGAGTGCAGC 59.526 47.619 4.78 0.00 46.81 5.25
233 234 1.105457 TATGGCATTTGAGTGCAGCC 58.895 50.000 4.78 4.02 46.81 4.85
234 235 2.180017 GGCATTTGAGTGCAGCCG 59.820 61.111 1.06 0.00 46.81 5.52
235 236 2.505557 GCATTTGAGTGCAGCCGC 60.506 61.111 0.00 0.00 44.43 6.53
236 237 2.986306 GCATTTGAGTGCAGCCGCT 61.986 57.895 0.00 0.00 44.43 5.52
237 238 1.647545 GCATTTGAGTGCAGCCGCTA 61.648 55.000 0.00 0.00 44.43 4.26
238 239 1.019673 CATTTGAGTGCAGCCGCTAT 58.980 50.000 0.00 0.00 39.64 2.97
239 240 2.212652 CATTTGAGTGCAGCCGCTATA 58.787 47.619 0.00 0.00 39.64 1.31
240 241 1.939974 TTTGAGTGCAGCCGCTATAG 58.060 50.000 0.00 0.00 39.64 1.31
241 242 0.530650 TTGAGTGCAGCCGCTATAGC 60.531 55.000 15.09 15.09 39.64 2.97
255 256 4.744136 GCTATAGCGGTCCCATAAAAAC 57.256 45.455 9.40 0.00 0.00 2.43
256 257 4.131596 GCTATAGCGGTCCCATAAAAACA 58.868 43.478 9.40 0.00 0.00 2.83
257 258 4.577283 GCTATAGCGGTCCCATAAAAACAA 59.423 41.667 9.40 0.00 0.00 2.83
258 259 5.240844 GCTATAGCGGTCCCATAAAAACAAT 59.759 40.000 9.40 0.00 0.00 2.71
259 260 6.428771 GCTATAGCGGTCCCATAAAAACAATA 59.571 38.462 9.40 0.00 0.00 1.90
260 261 7.040961 GCTATAGCGGTCCCATAAAAACAATAA 60.041 37.037 9.40 0.00 0.00 1.40
261 262 5.319140 AGCGGTCCCATAAAAACAATAAC 57.681 39.130 0.00 0.00 0.00 1.89
262 263 4.158949 AGCGGTCCCATAAAAACAATAACC 59.841 41.667 0.00 0.00 0.00 2.85
263 264 4.082136 GCGGTCCCATAAAAACAATAACCA 60.082 41.667 0.00 0.00 0.00 3.67
264 265 5.567025 GCGGTCCCATAAAAACAATAACCAA 60.567 40.000 0.00 0.00 0.00 3.67
265 266 6.096695 CGGTCCCATAAAAACAATAACCAAG 58.903 40.000 0.00 0.00 0.00 3.61
266 267 6.294843 CGGTCCCATAAAAACAATAACCAAGT 60.295 38.462 0.00 0.00 0.00 3.16
267 268 7.446769 GGTCCCATAAAAACAATAACCAAGTT 58.553 34.615 0.00 0.00 0.00 2.66
268 269 7.386573 GGTCCCATAAAAACAATAACCAAGTTG 59.613 37.037 0.00 0.00 0.00 3.16
269 270 8.145122 GTCCCATAAAAACAATAACCAAGTTGA 58.855 33.333 3.87 0.00 0.00 3.18
270 271 8.875168 TCCCATAAAAACAATAACCAAGTTGAT 58.125 29.630 3.87 0.00 0.00 2.57
280 281 9.685276 ACAATAACCAAGTTGATATCTGAATCA 57.315 29.630 3.87 0.00 34.07 2.57
281 282 9.941664 CAATAACCAAGTTGATATCTGAATCAC 57.058 33.333 3.87 0.00 35.63 3.06
282 283 9.911788 AATAACCAAGTTGATATCTGAATCACT 57.088 29.630 3.87 0.00 35.63 3.41
283 284 9.911788 ATAACCAAGTTGATATCTGAATCACTT 57.088 29.630 3.87 0.79 35.63 3.16
284 285 8.641498 AACCAAGTTGATATCTGAATCACTTT 57.359 30.769 3.87 0.36 35.63 2.66
285 286 8.641498 ACCAAGTTGATATCTGAATCACTTTT 57.359 30.769 3.87 0.00 35.63 2.27
286 287 8.734386 ACCAAGTTGATATCTGAATCACTTTTC 58.266 33.333 3.87 0.00 35.63 2.29
287 288 8.733458 CCAAGTTGATATCTGAATCACTTTTCA 58.267 33.333 3.87 0.00 35.63 2.69
295 296 5.368256 CTGAATCACTTTTCAGTTGGGAG 57.632 43.478 6.12 0.00 44.90 4.30
296 297 5.047566 TGAATCACTTTTCAGTTGGGAGA 57.952 39.130 0.00 0.00 32.07 3.71
297 298 4.821805 TGAATCACTTTTCAGTTGGGAGAC 59.178 41.667 0.00 0.00 32.07 3.36
298 299 4.713792 ATCACTTTTCAGTTGGGAGACT 57.286 40.909 0.00 0.00 0.00 3.24
299 300 4.073293 TCACTTTTCAGTTGGGAGACTC 57.927 45.455 0.00 0.00 0.00 3.36
300 301 3.454447 TCACTTTTCAGTTGGGAGACTCA 59.546 43.478 4.53 0.00 0.00 3.41
301 302 4.080582 TCACTTTTCAGTTGGGAGACTCAA 60.081 41.667 4.53 0.00 0.00 3.02
302 303 4.035675 CACTTTTCAGTTGGGAGACTCAAC 59.964 45.833 4.53 6.41 43.31 3.18
303 304 3.924114 TTTCAGTTGGGAGACTCAACA 57.076 42.857 15.29 0.00 44.84 3.33
304 305 3.924114 TTCAGTTGGGAGACTCAACAA 57.076 42.857 15.29 6.28 44.84 2.83
305 306 3.924114 TCAGTTGGGAGACTCAACAAA 57.076 42.857 15.29 1.99 44.84 2.83
306 307 3.808728 TCAGTTGGGAGACTCAACAAAG 58.191 45.455 15.29 8.89 44.84 2.77
307 308 3.199946 TCAGTTGGGAGACTCAACAAAGT 59.800 43.478 15.29 2.76 44.84 2.66
308 309 3.313526 CAGTTGGGAGACTCAACAAAGTG 59.686 47.826 15.29 9.49 44.84 3.16
309 310 2.618709 GTTGGGAGACTCAACAAAGTGG 59.381 50.000 11.87 0.00 42.72 4.00
310 311 2.123589 TGGGAGACTCAACAAAGTGGA 58.876 47.619 4.53 0.00 0.00 4.02
311 312 2.711009 TGGGAGACTCAACAAAGTGGAT 59.289 45.455 4.53 0.00 0.00 3.41
312 313 3.077359 GGGAGACTCAACAAAGTGGATG 58.923 50.000 4.53 0.00 0.00 3.51
313 314 3.244561 GGGAGACTCAACAAAGTGGATGA 60.245 47.826 4.53 0.00 0.00 2.92
314 315 3.748568 GGAGACTCAACAAAGTGGATGAC 59.251 47.826 4.53 0.00 0.00 3.06
315 316 4.380531 GAGACTCAACAAAGTGGATGACA 58.619 43.478 0.00 0.00 0.00 3.58
316 317 4.978099 AGACTCAACAAAGTGGATGACAT 58.022 39.130 0.00 0.00 0.00 3.06
317 318 4.758674 AGACTCAACAAAGTGGATGACATG 59.241 41.667 0.00 0.00 0.00 3.21
318 319 4.464008 ACTCAACAAAGTGGATGACATGT 58.536 39.130 0.00 0.00 0.00 3.21
319 320 5.620206 ACTCAACAAAGTGGATGACATGTA 58.380 37.500 0.00 0.00 0.00 2.29
320 321 6.061441 ACTCAACAAAGTGGATGACATGTAA 58.939 36.000 0.00 0.00 0.00 2.41
321 322 6.205464 ACTCAACAAAGTGGATGACATGTAAG 59.795 38.462 0.00 0.00 0.00 2.34
322 323 5.473162 TCAACAAAGTGGATGACATGTAAGG 59.527 40.000 0.00 0.00 0.00 2.69
323 324 5.241403 ACAAAGTGGATGACATGTAAGGA 57.759 39.130 0.00 0.00 0.00 3.36
324 325 5.003804 ACAAAGTGGATGACATGTAAGGAC 58.996 41.667 0.00 0.00 0.00 3.85
325 326 4.908601 AAGTGGATGACATGTAAGGACA 57.091 40.909 0.00 0.00 40.72 4.02
327 328 6.560003 AAGTGGATGACATGTAAGGACATA 57.440 37.500 0.00 0.00 44.82 2.29
328 329 6.753913 AGTGGATGACATGTAAGGACATAT 57.246 37.500 0.00 0.00 44.82 1.78
329 330 6.528321 AGTGGATGACATGTAAGGACATATG 58.472 40.000 0.00 0.00 44.82 1.78
330 331 6.327365 AGTGGATGACATGTAAGGACATATGA 59.673 38.462 10.38 0.00 44.82 2.15
331 332 6.648310 GTGGATGACATGTAAGGACATATGAG 59.352 42.308 10.38 0.00 44.82 2.90
332 333 6.327365 TGGATGACATGTAAGGACATATGAGT 59.673 38.462 10.38 0.00 44.82 3.41
333 334 7.508977 TGGATGACATGTAAGGACATATGAGTA 59.491 37.037 10.38 0.00 44.82 2.59
334 335 8.535335 GGATGACATGTAAGGACATATGAGTAT 58.465 37.037 10.38 0.00 44.82 2.12
335 336 9.935241 GATGACATGTAAGGACATATGAGTATT 57.065 33.333 10.38 1.49 44.82 1.89
359 360 7.784633 TTTAATTGAAACAAAAGCTTGGAGG 57.215 32.000 0.00 0.00 36.82 4.30
360 361 2.888834 TGAAACAAAAGCTTGGAGGC 57.111 45.000 0.00 0.00 36.82 4.70
361 362 2.106566 TGAAACAAAAGCTTGGAGGCA 58.893 42.857 0.00 0.00 36.82 4.75
362 363 2.101249 TGAAACAAAAGCTTGGAGGCAG 59.899 45.455 0.00 0.00 36.82 4.85
363 364 0.390492 AACAAAAGCTTGGAGGCAGC 59.610 50.000 0.00 0.00 36.82 5.25
364 365 1.291272 CAAAAGCTTGGAGGCAGCC 59.709 57.895 1.84 1.84 38.09 4.85
365 366 1.154688 AAAAGCTTGGAGGCAGCCT 59.845 52.632 16.12 16.12 38.09 4.58
375 376 2.524569 GAGGCAGCCTCTTAGCTTAG 57.475 55.000 31.54 0.00 46.41 2.18
376 377 2.035632 GAGGCAGCCTCTTAGCTTAGA 58.964 52.381 31.54 1.92 46.41 2.10
377 378 2.035832 GAGGCAGCCTCTTAGCTTAGAG 59.964 54.545 31.54 20.47 46.41 2.43
384 385 2.671596 CTCTTAGCTTAGAGGCGATGC 58.328 52.381 19.82 0.00 38.38 3.91
385 386 2.295909 CTCTTAGCTTAGAGGCGATGCT 59.704 50.000 19.82 0.00 38.38 3.79
386 387 3.487372 TCTTAGCTTAGAGGCGATGCTA 58.513 45.455 0.00 0.00 37.29 3.49
387 388 3.889538 TCTTAGCTTAGAGGCGATGCTAA 59.110 43.478 0.00 13.01 41.86 3.09
388 389 2.810439 AGCTTAGAGGCGATGCTAAG 57.190 50.000 11.79 11.79 43.95 2.18
389 390 1.342819 AGCTTAGAGGCGATGCTAAGG 59.657 52.381 15.61 3.83 42.29 2.69
390 391 1.341531 GCTTAGAGGCGATGCTAAGGA 59.658 52.381 15.61 0.00 42.29 3.36
391 392 2.028567 GCTTAGAGGCGATGCTAAGGAT 60.029 50.000 15.61 0.00 42.29 3.24
392 393 3.556004 GCTTAGAGGCGATGCTAAGGATT 60.556 47.826 15.61 0.00 42.29 3.01
393 394 4.636249 CTTAGAGGCGATGCTAAGGATTT 58.364 43.478 0.00 0.00 39.75 2.17
394 395 3.567478 AGAGGCGATGCTAAGGATTTT 57.433 42.857 0.00 0.00 0.00 1.82
395 396 3.891049 AGAGGCGATGCTAAGGATTTTT 58.109 40.909 0.00 0.00 0.00 1.94
415 416 3.658757 TTGTTAAAGGCAACCTCATGC 57.341 42.857 0.00 0.00 45.67 4.06
427 428 5.284079 GCAACCTCATGCAATGTATAAAGG 58.716 41.667 9.34 9.34 46.80 3.11
428 429 5.284079 CAACCTCATGCAATGTATAAAGGC 58.716 41.667 10.40 0.00 46.80 4.35
429 430 4.535781 ACCTCATGCAATGTATAAAGGCA 58.464 39.130 10.40 0.00 46.80 4.75
430 431 4.581824 ACCTCATGCAATGTATAAAGGCAG 59.418 41.667 10.40 0.00 46.80 4.85
431 432 4.543692 CTCATGCAATGTATAAAGGCAGC 58.456 43.478 0.00 0.00 46.80 5.25
432 433 3.318839 TCATGCAATGTATAAAGGCAGCC 59.681 43.478 1.84 1.84 46.80 4.85
433 434 3.017048 TGCAATGTATAAAGGCAGCCT 57.983 42.857 8.70 8.70 33.87 4.58
434 435 2.951642 TGCAATGTATAAAGGCAGCCTC 59.048 45.455 16.53 1.59 30.89 4.70
435 436 3.217626 GCAATGTATAAAGGCAGCCTCT 58.782 45.455 16.53 2.36 30.89 3.69
436 437 4.141505 TGCAATGTATAAAGGCAGCCTCTA 60.142 41.667 16.53 5.42 30.89 2.43
437 438 4.821805 GCAATGTATAAAGGCAGCCTCTAA 59.178 41.667 16.53 3.30 30.89 2.10
438 439 5.299279 GCAATGTATAAAGGCAGCCTCTAAA 59.701 40.000 16.53 2.62 30.89 1.85
439 440 6.514048 GCAATGTATAAAGGCAGCCTCTAAAG 60.514 42.308 16.53 0.19 30.89 1.85
440 441 5.036117 TGTATAAAGGCAGCCTCTAAAGG 57.964 43.478 16.53 0.00 46.44 3.11
452 453 2.990066 TCTAAAGGCTTAGAGGCAGC 57.010 50.000 0.00 0.00 44.19 5.25
453 454 2.472029 TCTAAAGGCTTAGAGGCAGCT 58.528 47.619 0.00 0.00 44.19 4.24
454 455 3.643237 TCTAAAGGCTTAGAGGCAGCTA 58.357 45.455 0.00 0.00 44.19 3.32
455 456 4.227197 TCTAAAGGCTTAGAGGCAGCTAT 58.773 43.478 0.00 0.00 44.19 2.97
456 457 5.394738 TCTAAAGGCTTAGAGGCAGCTATA 58.605 41.667 0.00 0.00 44.19 1.31
457 458 4.615588 AAAGGCTTAGAGGCAGCTATAG 57.384 45.455 0.00 0.00 44.19 1.31
458 459 3.534357 AGGCTTAGAGGCAGCTATAGA 57.466 47.619 3.21 0.00 44.19 1.98
459 460 3.430453 AGGCTTAGAGGCAGCTATAGAG 58.570 50.000 3.21 0.00 44.19 2.43
460 461 2.495669 GGCTTAGAGGCAGCTATAGAGG 59.504 54.545 3.21 0.00 40.97 3.69
461 462 2.094234 GCTTAGAGGCAGCTATAGAGGC 60.094 54.545 3.21 7.47 34.15 4.70
462 463 2.980246 TAGAGGCAGCTATAGAGGCA 57.020 50.000 17.42 0.00 0.00 4.75
463 464 2.094100 AGAGGCAGCTATAGAGGCAA 57.906 50.000 17.42 0.00 0.00 4.52
464 465 1.691434 AGAGGCAGCTATAGAGGCAAC 59.309 52.381 17.42 12.13 0.00 4.17
465 466 1.414181 GAGGCAGCTATAGAGGCAACA 59.586 52.381 17.42 0.00 41.41 3.33
466 467 1.839994 AGGCAGCTATAGAGGCAACAA 59.160 47.619 17.42 0.00 41.41 2.83
467 468 2.239654 AGGCAGCTATAGAGGCAACAAA 59.760 45.455 17.42 0.00 41.41 2.83
468 469 3.016736 GGCAGCTATAGAGGCAACAAAA 58.983 45.455 15.28 0.00 41.41 2.44
469 470 3.065925 GGCAGCTATAGAGGCAACAAAAG 59.934 47.826 15.28 0.00 41.41 2.27
470 471 3.691609 GCAGCTATAGAGGCAACAAAAGT 59.308 43.478 3.21 0.00 41.41 2.66
471 472 4.437930 GCAGCTATAGAGGCAACAAAAGTG 60.438 45.833 3.21 0.00 41.41 3.16
472 473 3.691609 AGCTATAGAGGCAACAAAAGTGC 59.308 43.478 3.21 0.00 41.45 4.40
473 474 3.440173 GCTATAGAGGCAACAAAAGTGCA 59.560 43.478 3.21 0.00 44.07 4.57
474 475 3.923017 ATAGAGGCAACAAAAGTGCAC 57.077 42.857 9.40 9.40 44.07 4.57
475 476 1.473258 AGAGGCAACAAAAGTGCACA 58.527 45.000 21.04 0.00 44.07 4.57
476 477 2.034124 AGAGGCAACAAAAGTGCACAT 58.966 42.857 21.04 3.48 44.07 3.21
477 478 2.431782 AGAGGCAACAAAAGTGCACATT 59.568 40.909 21.04 11.14 44.07 2.71
478 479 2.540931 GAGGCAACAAAAGTGCACATTG 59.459 45.455 25.12 25.12 44.07 2.82
479 480 2.093553 AGGCAACAAAAGTGCACATTGT 60.094 40.909 26.15 26.15 44.07 2.71
480 481 2.030701 GGCAACAAAAGTGCACATTGTG 59.969 45.455 29.87 24.58 44.07 3.33
481 482 2.030701 GCAACAAAAGTGCACATTGTGG 59.969 45.455 29.87 28.15 41.80 4.17
482 483 3.519579 CAACAAAAGTGCACATTGTGGA 58.480 40.909 29.87 12.94 37.36 4.02
483 484 4.121317 CAACAAAAGTGCACATTGTGGAT 58.879 39.130 29.87 18.12 36.11 3.41
484 485 3.719924 ACAAAAGTGCACATTGTGGATG 58.280 40.909 29.12 17.26 36.11 3.51
485 486 2.443887 AAAGTGCACATTGTGGATGC 57.556 45.000 21.04 4.99 39.47 3.91
486 487 1.624336 AAGTGCACATTGTGGATGCT 58.376 45.000 21.04 7.21 39.47 3.79
487 488 1.171308 AGTGCACATTGTGGATGCTC 58.829 50.000 21.04 3.95 39.47 4.26
488 489 1.171308 GTGCACATTGTGGATGCTCT 58.829 50.000 18.05 0.00 39.47 4.09
489 490 2.026915 AGTGCACATTGTGGATGCTCTA 60.027 45.455 21.04 0.00 40.39 2.43
496 497 0.175760 TGTGGATGCTCTAAGTCGGC 59.824 55.000 0.00 0.00 0.00 5.54
543 544 3.134127 CCGCCCAGGCTGTAAAGC 61.134 66.667 14.43 9.60 39.32 3.51
627 638 4.078516 ACTAACCAGCGCCGGGAC 62.079 66.667 21.34 0.00 0.00 4.46
712 723 1.003545 CCAAAGATAATCGCGTGCCAG 60.004 52.381 5.77 0.00 0.00 4.85
722 733 3.604667 CGTGCCAGGCCAAAGCAA 61.605 61.111 15.00 0.00 42.56 3.91
723 734 2.820973 GTGCCAGGCCAAAGCAAA 59.179 55.556 15.00 0.00 42.56 3.68
750 761 2.307309 CGAAAGCGACGACAGGCAA 61.307 57.895 0.00 0.00 40.82 4.52
789 800 0.853419 GTAATCACGAGCCGCTAAGC 59.147 55.000 0.00 0.00 0.00 3.09
837 848 4.120244 ATCCCTCGGATCGGATGG 57.880 61.111 15.70 15.70 38.09 3.51
839 850 0.041833 ATCCCTCGGATCGGATGGAT 59.958 55.000 25.01 25.01 38.09 3.41
840 851 0.178932 TCCCTCGGATCGGATGGATT 60.179 55.000 19.13 0.00 34.82 3.01
842 853 1.899814 CCCTCGGATCGGATGGATTAA 59.100 52.381 16.54 0.00 34.82 1.40
844 855 3.244422 CCCTCGGATCGGATGGATTAAAA 60.244 47.826 16.54 0.00 34.82 1.52
845 856 4.565652 CCCTCGGATCGGATGGATTAAAAT 60.566 45.833 16.54 0.00 34.82 1.82
846 857 4.631813 CCTCGGATCGGATGGATTAAAATC 59.368 45.833 3.13 0.00 34.82 2.17
847 858 5.222079 TCGGATCGGATGGATTAAAATCA 57.778 39.130 0.00 0.00 37.15 2.57
848 859 5.237815 TCGGATCGGATGGATTAAAATCAG 58.762 41.667 0.00 0.00 37.15 2.90
850 861 5.349817 CGGATCGGATGGATTAAAATCAGAG 59.650 44.000 0.00 0.00 37.15 3.35
851 862 5.645497 GGATCGGATGGATTAAAATCAGAGG 59.355 44.000 0.00 0.00 37.15 3.69
852 863 4.973168 TCGGATGGATTAAAATCAGAGGG 58.027 43.478 5.15 0.00 37.15 4.30
853 864 4.658435 TCGGATGGATTAAAATCAGAGGGA 59.342 41.667 5.15 0.00 37.15 4.20
854 865 4.999950 CGGATGGATTAAAATCAGAGGGAG 59.000 45.833 5.15 0.00 37.15 4.30
855 866 5.320277 GGATGGATTAAAATCAGAGGGAGG 58.680 45.833 5.15 0.00 37.15 4.30
1089 1113 1.399089 GAAGACGACGAGGAAGAGGAG 59.601 57.143 0.00 0.00 0.00 3.69
1428 1452 1.079266 CAGGTCAGCTCTCTGCCAC 60.079 63.158 0.00 0.00 44.23 5.01
1466 1493 6.312426 TGGTTTGTTTCTTTGTTGCAGTATTG 59.688 34.615 0.00 0.00 0.00 1.90
1562 1589 2.276680 GATCGAAACAAGCCGCGC 60.277 61.111 0.00 0.00 0.00 6.86
1658 1685 6.035112 GGTGATCAGACATTTTAGACTTCGAC 59.965 42.308 0.00 0.00 0.00 4.20
1717 1744 8.286191 ACCAGGAATTTTCAATCAGATACTTC 57.714 34.615 0.00 0.00 0.00 3.01
1729 1756 3.004419 TCAGATACTTCCGCACGATAAGG 59.996 47.826 0.00 0.00 0.00 2.69
1737 1765 5.924825 ACTTCCGCACGATAAGGATATTTAC 59.075 40.000 0.00 0.00 33.57 2.01
1740 1768 7.400599 TCCGCACGATAAGGATATTTACTAT 57.599 36.000 0.00 0.00 0.00 2.12
1741 1769 7.833786 TCCGCACGATAAGGATATTTACTATT 58.166 34.615 0.00 0.00 0.00 1.73
1742 1770 8.308931 TCCGCACGATAAGGATATTTACTATTT 58.691 33.333 0.00 0.00 0.00 1.40
1743 1771 9.577110 CCGCACGATAAGGATATTTACTATTTA 57.423 33.333 0.00 0.00 0.00 1.40
1769 1797 3.626028 ACTTCATTTCAAGCGGAACAC 57.374 42.857 0.00 0.00 34.56 3.32
1771 1799 0.871722 TCATTTCAAGCGGAACACGG 59.128 50.000 0.00 0.00 44.51 4.94
1786 1814 4.913345 GGAACACGGTTATTTACTTTGTGC 59.087 41.667 0.00 0.00 31.84 4.57
1791 1819 6.474102 ACACGGTTATTTACTTTGTGCAAAAG 59.526 34.615 15.42 15.42 31.84 2.27
1877 1907 3.126000 GCTCCTGAGTAGTTGATGCAAAC 59.874 47.826 0.00 0.00 0.00 2.93
1891 1921 6.895607 TGATGCAAACATGCTGATTTAATG 57.104 33.333 0.00 0.00 36.35 1.90
1922 1952 7.809806 GTGTTTTGCTATTCTCTTGTTATGCTT 59.190 33.333 0.00 0.00 0.00 3.91
1961 1991 2.370849 ACAGGGTACGAACAGTGGAATT 59.629 45.455 0.00 0.00 0.00 2.17
2035 2066 3.228188 AGTGGTGCCTTTTGAATCAGA 57.772 42.857 0.00 0.00 0.00 3.27
2044 2075 5.218139 GCCTTTTGAATCAGAAGTTCTGTG 58.782 41.667 27.83 9.04 44.58 3.66
2055 2086 8.723942 ATCAGAAGTTCTGTGAATTATGGTAC 57.276 34.615 27.83 0.00 44.58 3.34
2107 2138 3.821033 CCAAGGAGTGGGAAACTGTTTAG 59.179 47.826 5.64 0.00 44.64 1.85
2122 2153 6.819397 ACTGTTTAGCCCAGAAGTTTATTC 57.181 37.500 0.00 0.00 34.04 1.75
2128 2159 9.489084 GTTTAGCCCAGAAGTTTATTCATTTTT 57.511 29.630 0.00 0.00 0.00 1.94
2141 2172 0.609662 CATTTTTGGGTGAGGGCTGG 59.390 55.000 0.00 0.00 0.00 4.85
2143 2174 0.469144 TTTTTGGGTGAGGGCTGGTC 60.469 55.000 0.00 0.00 0.00 4.02
2291 2322 6.510317 GCTGAGCTCTTTATTGGATTTCGTAC 60.510 42.308 16.19 0.00 0.00 3.67
2294 2325 4.879545 GCTCTTTATTGGATTTCGTACCCA 59.120 41.667 0.00 0.00 0.00 4.51
2334 2365 5.592688 TGACCTTGAAGTTGGGACTTTTTAG 59.407 40.000 0.00 0.00 45.88 1.85
2338 2369 4.862371 TGAAGTTGGGACTTTTTAGGTGT 58.138 39.130 0.00 0.00 45.88 4.16
2608 2650 6.489022 TGCTTCCTAGTCCCTTAAAAAGAAAC 59.511 38.462 0.00 0.00 0.00 2.78
2657 2699 3.887621 ACGTTTGCCTCAAGCTAGATA 57.112 42.857 0.00 0.00 44.23 1.98
2711 2753 9.651718 CTTAAACTCGATGCTCCAAATTATTAC 57.348 33.333 0.00 0.00 0.00 1.89
2829 2871 1.066143 AGAGGAAATAGTGTGCCCACG 60.066 52.381 0.00 0.00 46.56 4.94
2890 2932 2.092375 GGACTTAAGGTATGGCCAGCTT 60.092 50.000 13.05 12.27 40.61 3.74
2891 2933 3.621558 GACTTAAGGTATGGCCAGCTTT 58.378 45.455 13.05 11.91 40.61 3.51
2936 2978 1.589414 ATACCAGCTTCAAGCCCTCT 58.411 50.000 5.53 0.00 43.77 3.69
3021 3063 2.037121 TGGTCAAGAAATCTGCGTCAGA 59.963 45.455 11.12 11.12 44.99 3.27
3036 3078 3.424962 GCGTCAGAGACCAATTAAACAGC 60.425 47.826 0.00 0.00 0.00 4.40
3066 3108 4.819105 TCCGGATGAAGTTGACTTACAT 57.181 40.909 0.00 3.12 36.11 2.29
3105 3147 1.004440 GGTGCTGAGAACTTCCGCT 60.004 57.895 0.00 0.00 37.00 5.52
3111 3153 1.986378 CTGAGAACTTCCGCTGTAACG 59.014 52.381 0.00 0.00 0.00 3.18
3126 3168 5.515626 CGCTGTAACGCTAACTCTCTTTTAT 59.484 40.000 0.00 0.00 0.00 1.40
3166 3209 7.663905 AGATACCTAAGACTAGCAGACAGTATG 59.336 40.741 0.00 0.00 46.00 2.39
3177 3220 4.190350 CAGTATGCTGTGAGCGCA 57.810 55.556 11.47 0.00 46.26 6.09
3188 3231 0.518636 GTGAGCGCAATTTCTCTGCA 59.481 50.000 11.47 0.00 39.91 4.41
3191 3234 2.034432 TGAGCGCAATTTCTCTGCAAAA 59.966 40.909 11.47 0.00 39.91 2.44
3217 3260 7.094205 ACCAACATGTTTAGAGCCTTAAAGATG 60.094 37.037 8.77 18.35 43.98 2.90
3222 3265 8.680903 CATGTTTAGAGCCTTAAAGATGAACAT 58.319 33.333 16.43 0.00 42.42 2.71
3233 3276 7.394359 CCTTAAAGATGAACATTCAGGAAGGAA 59.606 37.037 12.77 0.00 41.08 3.36
3256 3299 6.500684 ACCATACACATTAAGTTTGAGCAG 57.499 37.500 0.00 0.00 0.00 4.24
3269 3312 4.214971 AGTTTGAGCAGTAGCATGAAACTG 59.785 41.667 18.58 18.58 45.49 3.16
3277 3320 5.798934 GCAGTAGCATGAAACTGAAAATGAG 59.201 40.000 24.22 3.68 44.79 2.90
3278 3321 6.348786 GCAGTAGCATGAAACTGAAAATGAGA 60.349 38.462 24.22 0.00 44.79 3.27
3279 3322 7.242079 CAGTAGCATGAAACTGAAAATGAGAG 58.758 38.462 18.24 0.00 44.79 3.20
3280 3323 7.118825 CAGTAGCATGAAACTGAAAATGAGAGA 59.881 37.037 18.24 0.00 44.79 3.10
3281 3324 7.828223 AGTAGCATGAAACTGAAAATGAGAGAT 59.172 33.333 0.00 0.00 0.00 2.75
3282 3325 9.102757 GTAGCATGAAACTGAAAATGAGAGATA 57.897 33.333 0.00 0.00 0.00 1.98
3284 3327 9.842775 AGCATGAAACTGAAAATGAGAGATATA 57.157 29.630 0.00 0.00 0.00 0.86
3303 3354 1.935799 ATTTGTGGGCAATGGCTACA 58.064 45.000 21.03 21.03 46.33 2.74
3306 3357 1.935799 TGTGGGCAATGGCTACATTT 58.064 45.000 21.03 0.00 44.69 2.32
3308 3359 3.023119 TGTGGGCAATGGCTACATTTAG 58.977 45.455 21.03 0.00 44.69 1.85
3312 3363 5.534654 GTGGGCAATGGCTACATTTAGATAA 59.465 40.000 17.76 0.00 44.69 1.75
3316 3367 7.255942 GGGCAATGGCTACATTTAGATAAACAT 60.256 37.037 6.78 0.00 44.69 2.71
3317 3368 8.143835 GGCAATGGCTACATTTAGATAAACATT 58.856 33.333 0.00 0.00 44.69 2.71
3344 3395 7.605410 TTAACCATTTTTCTCGTACATCCTC 57.395 36.000 0.00 0.00 0.00 3.71
3478 3529 2.362397 TCTCCTTGCTTCTATGCTACCG 59.638 50.000 0.00 0.00 0.00 4.02
3586 3637 4.485163 GAAACATCGCTATGGTTTTTGCT 58.515 39.130 2.67 0.00 43.20 3.91
3669 3720 4.377370 TGTGACCAAGCACATCCG 57.623 55.556 0.00 0.00 43.35 4.18
3783 3834 2.921754 GACTTTGATCGTAAGGACCGTG 59.078 50.000 10.92 0.00 38.47 4.94
3799 3850 0.614979 CGTGAGGGAAAGGGAGGAGA 60.615 60.000 0.00 0.00 0.00 3.71
3865 3916 0.679505 TGACCAAGACGAACCTCAGG 59.320 55.000 0.00 0.00 0.00 3.86
3902 3953 3.095738 CGAAACCGTTCACTTGTTCAAC 58.904 45.455 0.00 0.00 32.89 3.18
3945 3996 5.355350 CCCGATGATTGATAAGGCTATTTCC 59.645 44.000 0.00 0.00 0.00 3.13
3952 4003 5.353394 TGATAAGGCTATTTCCGAACAGT 57.647 39.130 0.00 0.00 0.00 3.55
3963 4014 4.720649 TTCCGAACAGTTCCTATCTGAG 57.279 45.455 7.76 0.00 36.81 3.35
3984 4035 3.010420 GGCTCAACAAGTCCTCCATAAC 58.990 50.000 0.00 0.00 0.00 1.89
4068 4119 1.499049 GAGTTCCTCCACGTCACAAC 58.501 55.000 0.00 0.00 0.00 3.32
4328 4381 8.189119 TGGTAATGGAGTTATTTTTGCTTCTT 57.811 30.769 0.00 0.00 0.00 2.52
4497 4550 6.802608 TGTGGTTCCTATATAAGTGAACGAG 58.197 40.000 0.00 0.00 36.78 4.18
4681 4734 6.882656 TGGCTTTATAAATGCATTTGCCTTA 58.117 32.000 33.08 20.93 41.18 2.69
4734 4863 4.455533 CAGTGCAGCTGTGGAAACTTATTA 59.544 41.667 16.64 0.00 40.27 0.98
4769 4900 1.507141 GATGCATTCCCCCGTTAGCG 61.507 60.000 0.00 0.00 37.95 4.26
4782 4913 1.859080 CGTTAGCGGGAACAAGATAGC 59.141 52.381 0.00 0.00 0.00 2.97
4783 4914 2.737359 CGTTAGCGGGAACAAGATAGCA 60.737 50.000 0.00 0.00 0.00 3.49
4784 4915 2.866762 GTTAGCGGGAACAAGATAGCAG 59.133 50.000 0.00 0.00 0.00 4.24
4785 4916 0.462759 AGCGGGAACAAGATAGCAGC 60.463 55.000 0.00 0.00 0.00 5.25
4786 4917 0.744414 GCGGGAACAAGATAGCAGCA 60.744 55.000 0.00 0.00 0.00 4.41
4787 4918 1.737838 CGGGAACAAGATAGCAGCAA 58.262 50.000 0.00 0.00 0.00 3.91
4788 4919 2.292267 CGGGAACAAGATAGCAGCAAT 58.708 47.619 0.00 0.00 0.00 3.56
4826 4974 2.186903 CTGTACCGCGCCCAATCT 59.813 61.111 0.00 0.00 0.00 2.40
4837 4985 1.139654 CGCCCAATCTTCTCATCCAGA 59.860 52.381 0.00 0.00 0.00 3.86
4839 4987 3.746751 CGCCCAATCTTCTCATCCAGATT 60.747 47.826 0.00 0.00 39.83 2.40
4880 5029 2.700371 TCCTCTTGAAGCAGTCAGACAA 59.300 45.455 2.66 0.00 37.61 3.18
4902 5051 3.981211 TGACCTTGTCAAACGGTACTAC 58.019 45.455 0.00 0.00 39.78 2.73
4905 5054 2.030007 CCTTGTCAAACGGTACTACGGA 60.030 50.000 1.00 0.00 38.39 4.69
4906 5055 3.367703 CCTTGTCAAACGGTACTACGGAT 60.368 47.826 1.00 0.00 38.39 4.18
4907 5056 4.142403 CCTTGTCAAACGGTACTACGGATA 60.142 45.833 1.00 0.00 38.39 2.59
4908 5057 4.355543 TGTCAAACGGTACTACGGATAC 57.644 45.455 1.00 0.00 38.39 2.24
4934 5083 2.495809 CAGGCACCATAAGCATGCA 58.504 52.632 21.98 0.00 41.27 3.96
4935 5084 0.384309 CAGGCACCATAAGCATGCAG 59.616 55.000 21.98 6.47 41.27 4.41
4936 5085 1.066918 GGCACCATAAGCATGCAGC 59.933 57.895 21.98 11.12 41.27 5.25
4964 5114 4.515404 GCCCAGCGTACGAGAATT 57.485 55.556 21.65 0.00 0.00 2.17
4977 5127 6.093404 CGTACGAGAATTGGATATATGCAGT 58.907 40.000 10.44 1.58 0.00 4.40
4978 5128 6.251589 CGTACGAGAATTGGATATATGCAGTC 59.748 42.308 10.44 8.96 0.00 3.51
4980 5130 5.247110 ACGAGAATTGGATATATGCAGTCCT 59.753 40.000 7.03 0.00 33.15 3.85
4988 6070 6.427441 TGGATATATGCAGTCCTACCTAGAG 58.573 44.000 2.31 0.00 33.15 2.43
4992 6074 1.281287 TGCAGTCCTACCTAGAGACGT 59.719 52.381 0.00 0.00 35.65 4.34
4999 6081 2.625737 CTACCTAGAGACGTTCCACGA 58.374 52.381 2.75 0.00 46.05 4.35
5002 6084 2.422832 ACCTAGAGACGTTCCACGATTC 59.577 50.000 2.75 0.56 46.05 2.52
5003 6085 2.422479 CCTAGAGACGTTCCACGATTCA 59.578 50.000 2.75 0.00 46.05 2.57
5004 6086 2.638556 AGAGACGTTCCACGATTCAG 57.361 50.000 2.75 0.00 46.05 3.02
5005 6087 0.992802 GAGACGTTCCACGATTCAGC 59.007 55.000 2.75 0.00 46.05 4.26
5006 6088 0.317160 AGACGTTCCACGATTCAGCA 59.683 50.000 2.75 0.00 46.05 4.41
5009 6100 2.535984 GACGTTCCACGATTCAGCATAG 59.464 50.000 2.75 0.00 46.05 2.23
5027 6118 4.554036 GATGGCCGTGCTCCCTCC 62.554 72.222 0.00 0.00 0.00 4.30
5068 6159 3.547567 ACAGCAGTGATCTTGCTCC 57.452 52.632 18.47 0.00 36.69 4.70
5073 6164 2.157738 GCAGTGATCTTGCTCCTGTTT 58.842 47.619 13.39 0.00 0.00 2.83
5074 6165 2.161211 GCAGTGATCTTGCTCCTGTTTC 59.839 50.000 13.39 0.00 0.00 2.78
5076 6167 1.129437 GTGATCTTGCTCCTGTTTCGC 59.871 52.381 0.00 0.00 0.00 4.70
5259 6350 1.064463 AGGACCATTGCGGATGTCATT 60.064 47.619 0.00 0.00 38.63 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 0.615544 CCAACCATTGTGGATGCCCT 60.616 55.000 2.45 0.00 40.96 5.19
128 129 0.614415 TCCAACCATTGTGGATGCCC 60.614 55.000 2.45 0.00 40.96 5.36
129 130 0.819582 CTCCAACCATTGTGGATGCC 59.180 55.000 2.45 0.00 40.96 4.40
130 131 0.819582 CCTCCAACCATTGTGGATGC 59.180 55.000 2.45 0.00 40.96 3.91
131 132 0.819582 GCCTCCAACCATTGTGGATG 59.180 55.000 2.45 0.96 40.96 3.51
132 133 0.409092 TGCCTCCAACCATTGTGGAT 59.591 50.000 2.45 0.00 40.96 3.41
133 134 0.251297 CTGCCTCCAACCATTGTGGA 60.251 55.000 2.45 0.00 40.96 4.02
134 135 1.880819 GCTGCCTCCAACCATTGTGG 61.881 60.000 0.00 0.00 45.02 4.17
135 136 1.180456 TGCTGCCTCCAACCATTGTG 61.180 55.000 0.00 0.00 0.00 3.33
136 137 0.251922 ATGCTGCCTCCAACCATTGT 60.252 50.000 0.00 0.00 0.00 2.71
137 138 0.899720 AATGCTGCCTCCAACCATTG 59.100 50.000 0.00 0.00 0.00 2.82
138 139 0.899720 CAATGCTGCCTCCAACCATT 59.100 50.000 0.00 0.00 0.00 3.16
139 140 1.610554 GCAATGCTGCCTCCAACCAT 61.611 55.000 0.00 0.00 43.26 3.55
140 141 2.277591 GCAATGCTGCCTCCAACCA 61.278 57.895 0.00 0.00 43.26 3.67
141 142 2.575461 GCAATGCTGCCTCCAACC 59.425 61.111 0.00 0.00 43.26 3.77
149 150 2.947656 CCAGCTTAGAGGCAATGCTGC 61.948 57.143 4.82 0.00 46.64 5.25
151 152 0.106819 CCCAGCTTAGAGGCAATGCT 60.107 55.000 4.82 0.00 34.17 3.79
152 153 1.105759 CCCCAGCTTAGAGGCAATGC 61.106 60.000 0.00 0.00 34.17 3.56
153 154 0.257039 ACCCCAGCTTAGAGGCAATG 59.743 55.000 0.00 0.00 34.17 2.82
154 155 0.548510 GACCCCAGCTTAGAGGCAAT 59.451 55.000 0.00 0.00 34.17 3.56
155 156 1.562672 GGACCCCAGCTTAGAGGCAA 61.563 60.000 0.00 0.00 34.17 4.52
156 157 1.995626 GGACCCCAGCTTAGAGGCA 60.996 63.158 0.00 0.00 34.17 4.75
157 158 1.995626 TGGACCCCAGCTTAGAGGC 60.996 63.158 0.00 0.00 0.00 4.70
158 159 0.909610 TGTGGACCCCAGCTTAGAGG 60.910 60.000 0.00 0.00 32.34 3.69
159 160 1.207791 ATGTGGACCCCAGCTTAGAG 58.792 55.000 0.00 0.00 32.34 2.43
160 161 1.281867 CAATGTGGACCCCAGCTTAGA 59.718 52.381 0.00 0.00 32.34 2.10
161 162 1.755179 CAATGTGGACCCCAGCTTAG 58.245 55.000 0.00 0.00 32.34 2.18
162 163 0.323360 GCAATGTGGACCCCAGCTTA 60.323 55.000 0.00 0.00 32.34 3.09
163 164 1.607467 GCAATGTGGACCCCAGCTT 60.607 57.895 0.00 0.00 32.34 3.74
164 165 2.036256 GCAATGTGGACCCCAGCT 59.964 61.111 0.00 0.00 32.34 4.24
165 166 2.036256 AGCAATGTGGACCCCAGC 59.964 61.111 0.00 0.00 32.34 4.85
166 167 2.345760 GCAGCAATGTGGACCCCAG 61.346 63.158 0.00 0.00 32.34 4.45
167 168 2.283101 GCAGCAATGTGGACCCCA 60.283 61.111 0.00 0.00 0.00 4.96
168 169 3.070576 GGCAGCAATGTGGACCCC 61.071 66.667 0.00 0.00 0.00 4.95
169 170 2.036256 AGGCAGCAATGTGGACCC 59.964 61.111 0.00 0.00 0.00 4.46
170 171 0.253044 TAGAGGCAGCAATGTGGACC 59.747 55.000 0.00 0.00 0.00 4.46
171 172 2.012673 CTTAGAGGCAGCAATGTGGAC 58.987 52.381 0.00 0.00 0.00 4.02
172 173 1.065199 CCTTAGAGGCAGCAATGTGGA 60.065 52.381 0.00 0.00 0.00 4.02
173 174 1.340405 ACCTTAGAGGCAGCAATGTGG 60.340 52.381 0.00 0.00 39.63 4.17
174 175 2.119801 ACCTTAGAGGCAGCAATGTG 57.880 50.000 0.00 0.00 39.63 3.21
175 176 2.887151 AACCTTAGAGGCAGCAATGT 57.113 45.000 0.00 0.00 39.63 2.71
176 177 3.873952 GACTAACCTTAGAGGCAGCAATG 59.126 47.826 0.00 0.00 39.63 2.82
177 178 3.519510 TGACTAACCTTAGAGGCAGCAAT 59.480 43.478 0.00 0.00 39.63 3.56
178 179 2.903784 TGACTAACCTTAGAGGCAGCAA 59.096 45.455 0.00 0.00 39.63 3.91
179 180 2.536066 TGACTAACCTTAGAGGCAGCA 58.464 47.619 0.00 0.00 39.63 4.41
180 181 3.611766 TTGACTAACCTTAGAGGCAGC 57.388 47.619 0.00 0.00 39.63 5.25
181 182 6.623767 GCATTTTTGACTAACCTTAGAGGCAG 60.624 42.308 0.00 0.00 39.63 4.85
182 183 5.183140 GCATTTTTGACTAACCTTAGAGGCA 59.817 40.000 0.00 0.00 39.63 4.75
183 184 5.416013 AGCATTTTTGACTAACCTTAGAGGC 59.584 40.000 0.00 0.00 39.63 4.70
184 185 6.623767 GCAGCATTTTTGACTAACCTTAGAGG 60.624 42.308 0.00 0.00 42.49 3.69
185 186 6.072508 TGCAGCATTTTTGACTAACCTTAGAG 60.073 38.462 0.00 0.00 34.84 2.43
186 187 5.767665 TGCAGCATTTTTGACTAACCTTAGA 59.232 36.000 0.00 0.00 34.84 2.10
187 188 6.012658 TGCAGCATTTTTGACTAACCTTAG 57.987 37.500 0.00 0.00 36.82 2.18
188 189 6.398234 TTGCAGCATTTTTGACTAACCTTA 57.602 33.333 0.00 0.00 0.00 2.69
189 190 4.935352 TGCAGCATTTTTGACTAACCTT 57.065 36.364 0.00 0.00 0.00 3.50
190 191 4.935352 TTGCAGCATTTTTGACTAACCT 57.065 36.364 0.00 0.00 0.00 3.50
191 192 4.990426 ACATTGCAGCATTTTTGACTAACC 59.010 37.500 0.00 0.00 0.00 2.85
192 193 7.201461 CCATACATTGCAGCATTTTTGACTAAC 60.201 37.037 0.00 0.00 0.00 2.34
193 194 6.812656 CCATACATTGCAGCATTTTTGACTAA 59.187 34.615 0.00 0.00 0.00 2.24
194 195 6.331845 CCATACATTGCAGCATTTTTGACTA 58.668 36.000 0.00 0.00 0.00 2.59
195 196 5.172934 CCATACATTGCAGCATTTTTGACT 58.827 37.500 0.00 0.00 0.00 3.41
196 197 4.201744 GCCATACATTGCAGCATTTTTGAC 60.202 41.667 0.00 0.00 0.00 3.18
197 198 3.933955 GCCATACATTGCAGCATTTTTGA 59.066 39.130 0.00 0.00 0.00 2.69
198 199 3.685272 TGCCATACATTGCAGCATTTTTG 59.315 39.130 0.00 0.00 32.77 2.44
199 200 3.940319 TGCCATACATTGCAGCATTTTT 58.060 36.364 0.00 0.00 32.77 1.94
200 201 3.613494 TGCCATACATTGCAGCATTTT 57.387 38.095 0.00 0.00 32.77 1.82
201 202 3.830744 ATGCCATACATTGCAGCATTT 57.169 38.095 0.00 0.00 41.19 2.32
211 212 2.100252 GCTGCACTCAAATGCCATACAT 59.900 45.455 0.00 0.00 45.50 2.29
212 213 1.473677 GCTGCACTCAAATGCCATACA 59.526 47.619 0.00 0.00 45.50 2.29
213 214 1.202336 GGCTGCACTCAAATGCCATAC 60.202 52.381 6.04 0.00 45.50 2.39
214 215 1.105457 GGCTGCACTCAAATGCCATA 58.895 50.000 6.04 0.00 45.50 2.74
215 216 1.895238 GGCTGCACTCAAATGCCAT 59.105 52.632 6.04 0.00 45.50 4.40
216 217 2.628696 CGGCTGCACTCAAATGCCA 61.629 57.895 11.00 0.00 45.50 4.92
217 218 2.180017 CGGCTGCACTCAAATGCC 59.820 61.111 0.50 0.91 45.50 4.40
218 219 1.647545 TAGCGGCTGCACTCAAATGC 61.648 55.000 21.93 0.00 46.23 3.56
219 220 1.019673 ATAGCGGCTGCACTCAAATG 58.980 50.000 21.93 0.00 46.23 2.32
220 221 2.487934 CTATAGCGGCTGCACTCAAAT 58.512 47.619 21.93 5.60 46.23 2.32
221 222 1.939974 CTATAGCGGCTGCACTCAAA 58.060 50.000 21.93 0.00 46.23 2.69
222 223 0.530650 GCTATAGCGGCTGCACTCAA 60.531 55.000 21.93 0.00 46.23 3.02
223 224 1.068083 GCTATAGCGGCTGCACTCA 59.932 57.895 21.93 1.56 46.23 3.41
224 225 3.943967 GCTATAGCGGCTGCACTC 58.056 61.111 21.93 0.00 46.23 3.51
234 235 4.131596 TGTTTTTATGGGACCGCTATAGC 58.868 43.478 15.09 15.09 37.78 2.97
235 236 6.877611 ATTGTTTTTATGGGACCGCTATAG 57.122 37.500 0.00 0.00 0.00 1.31
236 237 7.229106 GGTTATTGTTTTTATGGGACCGCTATA 59.771 37.037 0.00 0.00 0.00 1.31
237 238 6.040054 GGTTATTGTTTTTATGGGACCGCTAT 59.960 38.462 0.00 0.00 0.00 2.97
238 239 5.357596 GGTTATTGTTTTTATGGGACCGCTA 59.642 40.000 0.00 0.00 0.00 4.26
239 240 4.158949 GGTTATTGTTTTTATGGGACCGCT 59.841 41.667 0.00 0.00 0.00 5.52
240 241 4.082136 TGGTTATTGTTTTTATGGGACCGC 60.082 41.667 0.00 0.00 0.00 5.68
241 242 5.646577 TGGTTATTGTTTTTATGGGACCG 57.353 39.130 0.00 0.00 0.00 4.79
242 243 6.999950 ACTTGGTTATTGTTTTTATGGGACC 58.000 36.000 0.00 0.00 0.00 4.46
243 244 8.145122 TCAACTTGGTTATTGTTTTTATGGGAC 58.855 33.333 0.00 0.00 0.00 4.46
244 245 8.251383 TCAACTTGGTTATTGTTTTTATGGGA 57.749 30.769 0.00 0.00 0.00 4.37
254 255 9.685276 TGATTCAGATATCAACTTGGTTATTGT 57.315 29.630 5.32 0.00 31.82 2.71
255 256 9.941664 GTGATTCAGATATCAACTTGGTTATTG 57.058 33.333 5.32 0.00 36.37 1.90
256 257 9.911788 AGTGATTCAGATATCAACTTGGTTATT 57.088 29.630 5.32 0.00 36.37 1.40
257 258 9.911788 AAGTGATTCAGATATCAACTTGGTTAT 57.088 29.630 5.32 0.00 36.37 1.89
258 259 9.739276 AAAGTGATTCAGATATCAACTTGGTTA 57.261 29.630 5.32 0.00 36.37 2.85
259 260 8.641498 AAAGTGATTCAGATATCAACTTGGTT 57.359 30.769 5.32 0.00 36.37 3.67
260 261 8.641498 AAAAGTGATTCAGATATCAACTTGGT 57.359 30.769 5.32 0.00 36.37 3.67
261 262 8.733458 TGAAAAGTGATTCAGATATCAACTTGG 58.267 33.333 5.32 0.00 36.37 3.61
274 275 4.821805 GTCTCCCAACTGAAAAGTGATTCA 59.178 41.667 0.00 0.00 37.70 2.57
275 276 5.066593 AGTCTCCCAACTGAAAAGTGATTC 58.933 41.667 0.00 0.00 0.00 2.52
276 277 5.053978 AGTCTCCCAACTGAAAAGTGATT 57.946 39.130 0.00 0.00 0.00 2.57
277 278 4.103153 TGAGTCTCCCAACTGAAAAGTGAT 59.897 41.667 0.00 0.00 0.00 3.06
278 279 3.454447 TGAGTCTCCCAACTGAAAAGTGA 59.546 43.478 0.00 0.00 0.00 3.41
279 280 3.808728 TGAGTCTCCCAACTGAAAAGTG 58.191 45.455 0.00 0.00 0.00 3.16
280 281 4.200092 GTTGAGTCTCCCAACTGAAAAGT 58.800 43.478 0.00 0.00 40.37 2.66
281 282 4.199310 TGTTGAGTCTCCCAACTGAAAAG 58.801 43.478 0.00 0.00 43.05 2.27
282 283 4.229304 TGTTGAGTCTCCCAACTGAAAA 57.771 40.909 0.00 0.00 43.05 2.29
283 284 3.924114 TGTTGAGTCTCCCAACTGAAA 57.076 42.857 0.00 0.00 43.05 2.69
284 285 3.924114 TTGTTGAGTCTCCCAACTGAA 57.076 42.857 0.00 0.00 43.05 3.02
285 286 3.199946 ACTTTGTTGAGTCTCCCAACTGA 59.800 43.478 0.00 0.00 43.05 3.41
286 287 3.313526 CACTTTGTTGAGTCTCCCAACTG 59.686 47.826 0.00 0.19 43.05 3.16
287 288 3.545703 CACTTTGTTGAGTCTCCCAACT 58.454 45.455 0.00 0.00 43.05 3.16
288 289 2.618709 CCACTTTGTTGAGTCTCCCAAC 59.381 50.000 0.00 0.00 42.96 3.77
289 290 2.507886 TCCACTTTGTTGAGTCTCCCAA 59.492 45.455 0.00 0.00 0.00 4.12
290 291 2.123589 TCCACTTTGTTGAGTCTCCCA 58.876 47.619 0.00 0.00 0.00 4.37
291 292 2.930826 TCCACTTTGTTGAGTCTCCC 57.069 50.000 0.00 0.00 0.00 4.30
292 293 3.748568 GTCATCCACTTTGTTGAGTCTCC 59.251 47.826 0.00 0.00 0.00 3.71
293 294 4.380531 TGTCATCCACTTTGTTGAGTCTC 58.619 43.478 0.00 0.00 0.00 3.36
294 295 4.422073 TGTCATCCACTTTGTTGAGTCT 57.578 40.909 0.00 0.00 0.00 3.24
295 296 4.516698 ACATGTCATCCACTTTGTTGAGTC 59.483 41.667 0.00 0.00 0.00 3.36
296 297 4.464008 ACATGTCATCCACTTTGTTGAGT 58.536 39.130 0.00 0.00 0.00 3.41
297 298 6.348786 CCTTACATGTCATCCACTTTGTTGAG 60.349 42.308 0.00 0.00 0.00 3.02
298 299 5.473162 CCTTACATGTCATCCACTTTGTTGA 59.527 40.000 0.00 0.00 0.00 3.18
299 300 5.473162 TCCTTACATGTCATCCACTTTGTTG 59.527 40.000 0.00 0.00 0.00 3.33
300 301 5.473504 GTCCTTACATGTCATCCACTTTGTT 59.526 40.000 0.00 0.00 0.00 2.83
301 302 5.003804 GTCCTTACATGTCATCCACTTTGT 58.996 41.667 0.00 0.00 0.00 2.83
302 303 5.003160 TGTCCTTACATGTCATCCACTTTG 58.997 41.667 0.00 0.00 0.00 2.77
303 304 5.241403 TGTCCTTACATGTCATCCACTTT 57.759 39.130 0.00 0.00 0.00 2.66
304 305 4.908601 TGTCCTTACATGTCATCCACTT 57.091 40.909 0.00 0.00 0.00 3.16
305 306 6.327365 TCATATGTCCTTACATGTCATCCACT 59.673 38.462 0.00 0.00 45.99 4.00
306 307 6.524734 TCATATGTCCTTACATGTCATCCAC 58.475 40.000 0.00 0.00 45.99 4.02
307 308 6.327365 ACTCATATGTCCTTACATGTCATCCA 59.673 38.462 0.00 0.00 45.99 3.41
308 309 6.763355 ACTCATATGTCCTTACATGTCATCC 58.237 40.000 0.00 0.00 45.99 3.51
309 310 9.935241 AATACTCATATGTCCTTACATGTCATC 57.065 33.333 0.00 0.00 45.99 2.92
333 334 8.839343 CCTCCAAGCTTTTGTTTCAATTAAAAT 58.161 29.630 0.00 0.00 0.00 1.82
334 335 7.201688 GCCTCCAAGCTTTTGTTTCAATTAAAA 60.202 33.333 0.00 0.00 0.00 1.52
335 336 6.259829 GCCTCCAAGCTTTTGTTTCAATTAAA 59.740 34.615 0.00 0.00 0.00 1.52
336 337 5.757808 GCCTCCAAGCTTTTGTTTCAATTAA 59.242 36.000 0.00 0.00 0.00 1.40
337 338 5.163364 TGCCTCCAAGCTTTTGTTTCAATTA 60.163 36.000 0.00 0.00 0.00 1.40
338 339 4.129380 GCCTCCAAGCTTTTGTTTCAATT 58.871 39.130 0.00 0.00 0.00 2.32
339 340 3.134442 TGCCTCCAAGCTTTTGTTTCAAT 59.866 39.130 0.00 0.00 0.00 2.57
340 341 2.499289 TGCCTCCAAGCTTTTGTTTCAA 59.501 40.909 0.00 0.00 0.00 2.69
341 342 2.101249 CTGCCTCCAAGCTTTTGTTTCA 59.899 45.455 0.00 0.00 0.00 2.69
342 343 2.747436 CTGCCTCCAAGCTTTTGTTTC 58.253 47.619 0.00 0.00 0.00 2.78
343 344 1.202568 GCTGCCTCCAAGCTTTTGTTT 60.203 47.619 0.00 0.00 0.00 2.83
344 345 0.390492 GCTGCCTCCAAGCTTTTGTT 59.610 50.000 0.00 0.00 0.00 2.83
345 346 1.466851 GGCTGCCTCCAAGCTTTTGT 61.467 55.000 12.43 0.00 0.00 2.83
346 347 1.183676 AGGCTGCCTCCAAGCTTTTG 61.184 55.000 17.22 0.00 0.00 2.44
347 348 0.897401 GAGGCTGCCTCCAAGCTTTT 60.897 55.000 33.62 3.20 44.36 2.27
348 349 1.303970 GAGGCTGCCTCCAAGCTTT 60.304 57.895 33.62 4.02 44.36 3.51
349 350 2.354343 GAGGCTGCCTCCAAGCTT 59.646 61.111 33.62 4.83 44.36 3.74
357 358 2.038659 CTCTAAGCTAAGAGGCTGCCT 58.961 52.381 23.64 23.64 42.24 4.75
358 359 2.524569 CTCTAAGCTAAGAGGCTGCC 57.475 55.000 11.65 11.65 42.24 4.85
364 365 2.295909 AGCATCGCCTCTAAGCTAAGAG 59.704 50.000 0.00 0.00 42.30 2.85
365 366 2.311463 AGCATCGCCTCTAAGCTAAGA 58.689 47.619 0.00 0.00 33.06 2.10
366 367 2.810439 AGCATCGCCTCTAAGCTAAG 57.190 50.000 0.00 0.00 33.06 2.18
367 368 3.005897 CCTTAGCATCGCCTCTAAGCTAA 59.994 47.826 0.00 0.00 43.25 3.09
368 369 2.558795 CCTTAGCATCGCCTCTAAGCTA 59.441 50.000 10.12 0.00 40.04 3.32
369 370 1.342819 CCTTAGCATCGCCTCTAAGCT 59.657 52.381 10.12 0.00 40.04 3.74
370 371 1.341531 TCCTTAGCATCGCCTCTAAGC 59.658 52.381 10.12 0.00 40.04 3.09
371 372 3.951775 ATCCTTAGCATCGCCTCTAAG 57.048 47.619 9.15 9.15 40.68 2.18
372 373 4.689612 AAATCCTTAGCATCGCCTCTAA 57.310 40.909 0.00 0.00 0.00 2.10
373 374 4.689612 AAAATCCTTAGCATCGCCTCTA 57.310 40.909 0.00 0.00 0.00 2.43
374 375 3.567478 AAAATCCTTAGCATCGCCTCT 57.433 42.857 0.00 0.00 0.00 3.69
392 393 4.813697 GCATGAGGTTGCCTTTAACAAAAA 59.186 37.500 0.00 0.00 36.60 1.94
393 394 4.141846 TGCATGAGGTTGCCTTTAACAAAA 60.142 37.500 0.00 0.00 42.06 2.44
394 395 3.386078 TGCATGAGGTTGCCTTTAACAAA 59.614 39.130 0.00 0.00 42.06 2.83
395 396 2.961741 TGCATGAGGTTGCCTTTAACAA 59.038 40.909 0.00 0.00 42.06 2.83
396 397 2.591923 TGCATGAGGTTGCCTTTAACA 58.408 42.857 0.00 0.00 42.06 2.41
397 398 3.658757 TTGCATGAGGTTGCCTTTAAC 57.341 42.857 0.00 0.00 42.06 2.01
398 399 3.577848 ACATTGCATGAGGTTGCCTTTAA 59.422 39.130 0.00 0.00 42.06 1.52
399 400 3.164268 ACATTGCATGAGGTTGCCTTTA 58.836 40.909 0.00 0.00 42.06 1.85
400 401 1.972795 ACATTGCATGAGGTTGCCTTT 59.027 42.857 0.00 0.00 42.06 3.11
401 402 1.636148 ACATTGCATGAGGTTGCCTT 58.364 45.000 0.00 0.00 42.06 4.35
402 403 2.512692 TACATTGCATGAGGTTGCCT 57.487 45.000 0.00 0.00 42.06 4.75
403 404 4.916983 TTATACATTGCATGAGGTTGCC 57.083 40.909 0.00 0.00 42.06 4.52
404 405 5.284079 CCTTTATACATTGCATGAGGTTGC 58.716 41.667 0.00 0.00 43.07 4.17
405 406 5.163530 TGCCTTTATACATTGCATGAGGTTG 60.164 40.000 0.00 0.00 0.00 3.77
406 407 4.955450 TGCCTTTATACATTGCATGAGGTT 59.045 37.500 0.00 0.00 0.00 3.50
407 408 4.535781 TGCCTTTATACATTGCATGAGGT 58.464 39.130 0.00 0.00 0.00 3.85
408 409 4.558095 GCTGCCTTTATACATTGCATGAGG 60.558 45.833 0.00 0.00 0.00 3.86
409 410 4.543692 GCTGCCTTTATACATTGCATGAG 58.456 43.478 0.00 0.00 0.00 2.90
410 411 3.318839 GGCTGCCTTTATACATTGCATGA 59.681 43.478 12.43 0.00 0.00 3.07
411 412 3.319972 AGGCTGCCTTTATACATTGCATG 59.680 43.478 17.22 0.00 0.00 4.06
412 413 3.569491 AGGCTGCCTTTATACATTGCAT 58.431 40.909 17.22 0.00 0.00 3.96
413 414 2.951642 GAGGCTGCCTTTATACATTGCA 59.048 45.455 24.26 0.00 31.76 4.08
414 415 3.217626 AGAGGCTGCCTTTATACATTGC 58.782 45.455 24.26 5.59 31.76 3.56
415 416 6.016777 CCTTTAGAGGCTGCCTTTATACATTG 60.017 42.308 24.26 4.90 35.94 2.82
416 417 6.064717 CCTTTAGAGGCTGCCTTTATACATT 58.935 40.000 24.26 0.00 35.94 2.71
417 418 5.625150 CCTTTAGAGGCTGCCTTTATACAT 58.375 41.667 24.26 0.00 35.94 2.29
418 419 5.036117 CCTTTAGAGGCTGCCTTTATACA 57.964 43.478 24.26 3.74 35.94 2.29
433 434 2.472029 AGCTGCCTCTAAGCCTTTAGA 58.528 47.619 0.00 0.00 42.25 2.10
434 435 2.998316 AGCTGCCTCTAAGCCTTTAG 57.002 50.000 0.00 0.00 41.82 1.85
435 436 5.394738 TCTATAGCTGCCTCTAAGCCTTTA 58.605 41.667 0.00 0.00 41.82 1.85
436 437 4.227197 TCTATAGCTGCCTCTAAGCCTTT 58.773 43.478 0.00 0.00 41.82 3.11
437 438 3.831911 CTCTATAGCTGCCTCTAAGCCTT 59.168 47.826 0.00 0.00 41.82 4.35
438 439 3.430453 CTCTATAGCTGCCTCTAAGCCT 58.570 50.000 0.00 0.00 41.82 4.58
439 440 2.495669 CCTCTATAGCTGCCTCTAAGCC 59.504 54.545 0.00 0.00 41.82 4.35
440 441 2.094234 GCCTCTATAGCTGCCTCTAAGC 60.094 54.545 0.00 0.00 41.15 3.09
441 442 3.161067 TGCCTCTATAGCTGCCTCTAAG 58.839 50.000 0.00 0.00 0.00 2.18
442 443 3.244887 TGCCTCTATAGCTGCCTCTAA 57.755 47.619 0.00 0.00 0.00 2.10
443 444 2.894126 GTTGCCTCTATAGCTGCCTCTA 59.106 50.000 0.00 0.00 0.00 2.43
444 445 1.691434 GTTGCCTCTATAGCTGCCTCT 59.309 52.381 0.00 0.00 0.00 3.69
445 446 1.414181 TGTTGCCTCTATAGCTGCCTC 59.586 52.381 0.00 5.08 0.00 4.70
446 447 1.500474 TGTTGCCTCTATAGCTGCCT 58.500 50.000 0.00 0.00 0.00 4.75
447 448 2.332063 TTGTTGCCTCTATAGCTGCC 57.668 50.000 0.00 0.00 0.00 4.85
448 449 3.691609 ACTTTTGTTGCCTCTATAGCTGC 59.308 43.478 0.00 0.63 0.00 5.25
449 450 4.437930 GCACTTTTGTTGCCTCTATAGCTG 60.438 45.833 0.00 0.00 0.00 4.24
450 451 3.691609 GCACTTTTGTTGCCTCTATAGCT 59.308 43.478 0.00 0.00 0.00 3.32
451 452 3.440173 TGCACTTTTGTTGCCTCTATAGC 59.560 43.478 0.00 0.00 0.00 2.97
452 453 4.455533 TGTGCACTTTTGTTGCCTCTATAG 59.544 41.667 19.41 0.00 0.00 1.31
453 454 4.393834 TGTGCACTTTTGTTGCCTCTATA 58.606 39.130 19.41 0.00 0.00 1.31
454 455 3.221771 TGTGCACTTTTGTTGCCTCTAT 58.778 40.909 19.41 0.00 0.00 1.98
455 456 2.649190 TGTGCACTTTTGTTGCCTCTA 58.351 42.857 19.41 0.00 0.00 2.43
456 457 1.473258 TGTGCACTTTTGTTGCCTCT 58.527 45.000 19.41 0.00 0.00 3.69
457 458 2.514205 ATGTGCACTTTTGTTGCCTC 57.486 45.000 19.41 0.00 0.00 4.70
458 459 2.093553 ACAATGTGCACTTTTGTTGCCT 60.094 40.909 24.09 9.08 0.00 4.75
459 460 2.030701 CACAATGTGCACTTTTGTTGCC 59.969 45.455 26.01 0.00 0.00 4.52
460 461 2.030701 CCACAATGTGCACTTTTGTTGC 59.969 45.455 26.01 0.00 31.34 4.17
461 462 3.519579 TCCACAATGTGCACTTTTGTTG 58.480 40.909 26.01 23.36 31.34 3.33
462 463 3.883830 TCCACAATGTGCACTTTTGTT 57.116 38.095 26.01 14.64 31.34 2.83
463 464 3.719924 CATCCACAATGTGCACTTTTGT 58.280 40.909 24.09 24.09 31.34 2.83
464 465 2.477375 GCATCCACAATGTGCACTTTTG 59.523 45.455 23.09 23.09 38.68 2.44
465 466 2.366266 AGCATCCACAATGTGCACTTTT 59.634 40.909 19.41 9.05 41.19 2.27
466 467 1.965643 AGCATCCACAATGTGCACTTT 59.034 42.857 19.41 15.43 41.19 2.66
467 468 1.542915 GAGCATCCACAATGTGCACTT 59.457 47.619 19.41 9.21 41.19 3.16
468 469 1.171308 GAGCATCCACAATGTGCACT 58.829 50.000 19.41 1.75 41.19 4.40
469 470 1.171308 AGAGCATCCACAATGTGCAC 58.829 50.000 10.75 10.75 41.19 4.57
470 471 2.785540 TAGAGCATCCACAATGTGCA 57.214 45.000 8.05 0.00 41.19 4.57
471 472 3.012518 ACTTAGAGCATCCACAATGTGC 58.987 45.455 8.05 0.00 37.71 4.57
472 473 3.308053 CGACTTAGAGCATCCACAATGTG 59.692 47.826 6.37 6.37 37.71 3.21
473 474 3.525537 CGACTTAGAGCATCCACAATGT 58.474 45.455 0.00 0.00 37.71 2.71
474 475 2.868583 CCGACTTAGAGCATCCACAATG 59.131 50.000 0.00 0.00 38.50 2.82
475 476 2.743183 GCCGACTTAGAGCATCCACAAT 60.743 50.000 0.00 0.00 33.66 2.71
476 477 1.405526 GCCGACTTAGAGCATCCACAA 60.406 52.381 0.00 0.00 33.66 3.33
477 478 0.175760 GCCGACTTAGAGCATCCACA 59.824 55.000 0.00 0.00 33.66 4.17
478 479 0.530870 GGCCGACTTAGAGCATCCAC 60.531 60.000 0.00 0.00 33.66 4.02
479 480 0.687757 AGGCCGACTTAGAGCATCCA 60.688 55.000 0.00 0.00 33.66 3.41
480 481 0.032815 GAGGCCGACTTAGAGCATCC 59.967 60.000 0.00 0.00 33.66 3.51
481 482 1.036707 AGAGGCCGACTTAGAGCATC 58.963 55.000 0.00 0.00 37.58 3.91
482 483 0.749649 CAGAGGCCGACTTAGAGCAT 59.250 55.000 0.00 0.00 0.00 3.79
483 484 1.949847 GCAGAGGCCGACTTAGAGCA 61.950 60.000 0.00 0.00 0.00 4.26
484 485 1.227118 GCAGAGGCCGACTTAGAGC 60.227 63.158 0.00 0.00 0.00 4.09
485 486 1.064946 CGCAGAGGCCGACTTAGAG 59.935 63.158 0.00 0.00 36.38 2.43
486 487 2.415608 CCGCAGAGGCCGACTTAGA 61.416 63.158 0.00 0.00 36.38 2.10
487 488 2.105128 CCGCAGAGGCCGACTTAG 59.895 66.667 0.00 0.00 36.38 2.18
496 497 2.509336 CAGTTACGGCCGCAGAGG 60.509 66.667 28.58 8.90 44.97 3.69
624 635 4.216411 TGGTGGAGCATTAGTTAAGTCC 57.784 45.455 0.00 0.00 0.00 3.85
627 638 6.998074 TGGATTATGGTGGAGCATTAGTTAAG 59.002 38.462 0.00 0.00 0.00 1.85
712 723 1.792367 GATCGTGTTTTTGCTTTGGCC 59.208 47.619 0.00 0.00 37.74 5.36
831 842 4.973168 TCCCTCTGATTTTAATCCATCCG 58.027 43.478 0.32 0.00 34.50 4.18
832 843 5.073691 TCCTCCCTCTGATTTTAATCCATCC 59.926 44.000 0.32 0.00 34.50 3.51
834 845 5.674035 AGTCCTCCCTCTGATTTTAATCCAT 59.326 40.000 0.32 0.00 34.50 3.41
835 846 5.039645 AGTCCTCCCTCTGATTTTAATCCA 58.960 41.667 0.32 0.00 34.50 3.41
836 847 5.638530 AGTCCTCCCTCTGATTTTAATCC 57.361 43.478 0.32 0.00 34.50 3.01
840 851 9.901172 GTTTTTATAGTCCTCCCTCTGATTTTA 57.099 33.333 0.00 0.00 0.00 1.52
842 853 8.049721 CAGTTTTTATAGTCCTCCCTCTGATTT 58.950 37.037 0.00 0.00 0.00 2.17
844 855 6.100424 CCAGTTTTTATAGTCCTCCCTCTGAT 59.900 42.308 0.00 0.00 0.00 2.90
845 856 5.425539 CCAGTTTTTATAGTCCTCCCTCTGA 59.574 44.000 0.00 0.00 0.00 3.27
846 857 5.396884 CCCAGTTTTTATAGTCCTCCCTCTG 60.397 48.000 0.00 0.00 0.00 3.35
847 858 4.722279 CCCAGTTTTTATAGTCCTCCCTCT 59.278 45.833 0.00 0.00 0.00 3.69
848 859 4.686396 GCCCAGTTTTTATAGTCCTCCCTC 60.686 50.000 0.00 0.00 0.00 4.30
850 861 3.053917 TGCCCAGTTTTTATAGTCCTCCC 60.054 47.826 0.00 0.00 0.00 4.30
851 862 4.200092 CTGCCCAGTTTTTATAGTCCTCC 58.800 47.826 0.00 0.00 0.00 4.30
852 863 3.628032 GCTGCCCAGTTTTTATAGTCCTC 59.372 47.826 0.00 0.00 0.00 3.71
853 864 3.010138 TGCTGCCCAGTTTTTATAGTCCT 59.990 43.478 0.00 0.00 0.00 3.85
854 865 3.352648 TGCTGCCCAGTTTTTATAGTCC 58.647 45.455 0.00 0.00 0.00 3.85
855 866 5.161358 GTTTGCTGCCCAGTTTTTATAGTC 58.839 41.667 0.00 0.00 0.00 2.59
941 954 3.010226 CGGAAGGGGAGGAGGAGGA 62.010 68.421 0.00 0.00 0.00 3.71
942 955 2.444895 CGGAAGGGGAGGAGGAGG 60.445 72.222 0.00 0.00 0.00 4.30
943 956 3.157949 GCGGAAGGGGAGGAGGAG 61.158 72.222 0.00 0.00 0.00 3.69
1020 1035 2.731374 GAGATCCCGAGCCCGAAG 59.269 66.667 0.00 0.00 38.22 3.79
1089 1113 0.677414 ACTCGTCCTCCTCGAACTCC 60.677 60.000 0.00 0.00 36.89 3.85
1278 1302 1.063183 CAATCTCCATCCCCTCCTCC 58.937 60.000 0.00 0.00 0.00 4.30
1428 1452 1.420138 ACAAACCAGGTACAGAGTGGG 59.580 52.381 0.00 0.00 35.48 4.61
1466 1493 3.863142 AGGAAATTCAGCAGCACAATC 57.137 42.857 0.00 0.00 0.00 2.67
1518 1545 9.701098 ACAAATTCACGAAAACTATACTACTCA 57.299 29.630 0.00 0.00 0.00 3.41
1519 1546 9.953825 CACAAATTCACGAAAACTATACTACTC 57.046 33.333 0.00 0.00 0.00 2.59
1520 1547 9.701098 TCACAAATTCACGAAAACTATACTACT 57.299 29.630 0.00 0.00 0.00 2.57
1643 1670 6.018262 TCCTTGTTGTGTCGAAGTCTAAAATG 60.018 38.462 0.00 0.00 0.00 2.32
1706 1733 4.321304 CCTTATCGTGCGGAAGTATCTGAT 60.321 45.833 0.00 0.00 33.44 2.90
1708 1735 3.004419 TCCTTATCGTGCGGAAGTATCTG 59.996 47.826 0.00 0.00 34.87 2.90
1717 1744 8.475331 AAATAGTAAATATCCTTATCGTGCGG 57.525 34.615 0.00 0.00 0.00 5.69
1740 1768 7.380536 TCCGCTTGAAATGAAGTAGTACTAAA 58.619 34.615 3.61 0.00 0.00 1.85
1741 1769 6.927416 TCCGCTTGAAATGAAGTAGTACTAA 58.073 36.000 3.61 0.00 0.00 2.24
1742 1770 6.519679 TCCGCTTGAAATGAAGTAGTACTA 57.480 37.500 2.50 0.00 0.00 1.82
1743 1771 5.401531 TCCGCTTGAAATGAAGTAGTACT 57.598 39.130 0.00 0.00 0.00 2.73
1744 1772 5.407387 TGTTCCGCTTGAAATGAAGTAGTAC 59.593 40.000 0.00 0.00 33.94 2.73
1745 1773 5.407387 GTGTTCCGCTTGAAATGAAGTAGTA 59.593 40.000 0.00 0.00 33.94 1.82
1746 1774 4.213482 GTGTTCCGCTTGAAATGAAGTAGT 59.787 41.667 0.00 0.00 33.94 2.73
1747 1775 4.666655 CGTGTTCCGCTTGAAATGAAGTAG 60.667 45.833 0.00 0.00 33.94 2.57
1769 1797 5.980715 ACCTTTTGCACAAAGTAAATAACCG 59.019 36.000 15.52 4.83 31.75 4.44
1806 1834 8.299570 CCTAGAGTTTCATGTGCTGTTAAATTT 58.700 33.333 0.00 0.00 0.00 1.82
1816 1844 3.858238 GTCGTACCTAGAGTTTCATGTGC 59.142 47.826 0.00 0.00 0.00 4.57
1877 1907 5.244785 ACACAGCTCATTAAATCAGCATG 57.755 39.130 6.47 0.00 35.46 4.06
1891 1921 5.049129 ACAAGAGAATAGCAAAACACAGCTC 60.049 40.000 0.00 0.00 42.05 4.09
1922 1952 4.586421 CCCTGTATCTTCTCTGAGTGCATA 59.414 45.833 4.32 0.00 0.00 3.14
1936 1966 2.758979 CCACTGTTCGTACCCTGTATCT 59.241 50.000 0.00 0.00 0.00 1.98
1979 2010 9.667107 TTTAGATCCACTTGTTGACCTAATTAG 57.333 33.333 5.43 5.43 0.00 1.73
1988 2019 8.160765 TGTCCTATTTTTAGATCCACTTGTTGA 58.839 33.333 0.00 0.00 0.00 3.18
2071 2102 1.134220 TCCTTGGCATGGATCGTAACC 60.134 52.381 17.45 0.00 0.00 2.85
2076 2107 0.816825 CCACTCCTTGGCATGGATCG 60.817 60.000 21.04 13.51 39.07 3.69
2077 2108 0.466922 CCCACTCCTTGGCATGGATC 60.467 60.000 21.04 0.00 45.37 3.36
2096 2127 5.515797 AAACTTCTGGGCTAAACAGTTTC 57.484 39.130 0.48 0.00 37.25 2.78
2097 2128 7.286775 TGAATAAACTTCTGGGCTAAACAGTTT 59.713 33.333 3.49 3.49 37.95 2.66
2107 2138 5.643348 CCCAAAAATGAATAAACTTCTGGGC 59.357 40.000 0.00 0.00 33.82 5.36
2122 2153 0.609662 CCAGCCCTCACCCAAAAATG 59.390 55.000 0.00 0.00 0.00 2.32
2128 2159 1.306141 CTAGACCAGCCCTCACCCA 60.306 63.158 0.00 0.00 0.00 4.51
2141 2172 0.820871 CCAGGAGCAGACCACTAGAC 59.179 60.000 0.00 0.00 0.00 2.59
2143 2174 1.519719 GCCAGGAGCAGACCACTAG 59.480 63.158 0.00 0.00 42.97 2.57
2163 2194 5.277202 CGTATCTTCAGAATCATGGCAACTG 60.277 44.000 0.00 0.00 37.61 3.16
2291 2322 4.380867 GGTCAAGCACATAACAAATCTGGG 60.381 45.833 0.00 0.00 0.00 4.45
2294 2325 5.769662 TCAAGGTCAAGCACATAACAAATCT 59.230 36.000 0.00 0.00 0.00 2.40
2338 2369 4.100084 CATGCCGGCCAGGTCAGA 62.100 66.667 26.77 1.65 43.70 3.27
2544 2576 8.440059 TGACAACGTTAAATAAATACTGAGCTG 58.560 33.333 0.00 0.00 0.00 4.24
2545 2577 8.542497 TGACAACGTTAAATAAATACTGAGCT 57.458 30.769 0.00 0.00 0.00 4.09
2553 2585 7.696453 GCAGCAGTATGACAACGTTAAATAAAT 59.304 33.333 0.00 0.00 39.69 1.40
2554 2586 7.018826 GCAGCAGTATGACAACGTTAAATAAA 58.981 34.615 0.00 0.00 39.69 1.40
2556 2588 5.064198 GGCAGCAGTATGACAACGTTAAATA 59.936 40.000 0.00 0.00 39.69 1.40
2558 2590 3.187637 GGCAGCAGTATGACAACGTTAAA 59.812 43.478 0.00 0.00 39.69 1.52
2559 2591 2.739913 GGCAGCAGTATGACAACGTTAA 59.260 45.455 0.00 0.00 39.69 2.01
2657 2699 9.764363 TCTTATGATATTTAGTTGACGCTTCAT 57.236 29.630 0.00 0.00 0.00 2.57
2829 2871 5.465532 TCCTCTGCATCATCAAGAGTATC 57.534 43.478 0.00 0.00 0.00 2.24
3021 3063 0.802494 CGCCGCTGTTTAATTGGTCT 59.198 50.000 0.00 0.00 0.00 3.85
3066 3108 0.407528 TTATCAACCCAGCCAGGCAA 59.592 50.000 15.80 0.00 35.39 4.52
3105 3147 9.263538 TGAAAATAAAAGAGAGTTAGCGTTACA 57.736 29.630 0.00 0.00 0.00 2.41
3126 3168 9.490379 GTCTTAGGTATCTCTTGAAGTTGAAAA 57.510 33.333 0.00 0.00 0.00 2.29
3132 3174 7.120051 TGCTAGTCTTAGGTATCTCTTGAAGT 58.880 38.462 0.00 0.00 0.00 3.01
3166 3209 0.801251 AGAGAAATTGCGCTCACAGC 59.199 50.000 9.73 0.00 38.02 4.40
3176 3219 5.524646 ACATGTTGGTTTTGCAGAGAAATTG 59.475 36.000 0.00 0.00 0.00 2.32
3177 3220 5.673514 ACATGTTGGTTTTGCAGAGAAATT 58.326 33.333 0.00 0.00 0.00 1.82
3188 3231 5.869649 AAGGCTCTAAACATGTTGGTTTT 57.130 34.783 12.82 0.00 41.07 2.43
3191 3234 6.303839 TCTTTAAGGCTCTAAACATGTTGGT 58.696 36.000 12.82 0.00 0.00 3.67
3217 3260 5.123979 GTGTATGGTTCCTTCCTGAATGTTC 59.876 44.000 0.00 0.00 0.00 3.18
3222 3265 4.927267 ATGTGTATGGTTCCTTCCTGAA 57.073 40.909 0.00 0.00 0.00 3.02
3233 3276 6.003950 ACTGCTCAAACTTAATGTGTATGGT 58.996 36.000 0.00 0.00 0.00 3.55
3256 3299 7.369803 TCTCTCATTTTCAGTTTCATGCTAC 57.630 36.000 0.00 0.00 0.00 3.58
3269 3312 8.169977 TGCCCACAAATATATCTCTCATTTTC 57.830 34.615 0.00 0.00 0.00 2.29
3277 3320 4.768968 AGCCATTGCCCACAAATATATCTC 59.231 41.667 0.00 0.00 39.77 2.75
3278 3321 4.744237 AGCCATTGCCCACAAATATATCT 58.256 39.130 0.00 0.00 39.77 1.98
3279 3322 5.476599 TGTAGCCATTGCCCACAAATATATC 59.523 40.000 0.00 0.00 39.77 1.63
3280 3323 5.392995 TGTAGCCATTGCCCACAAATATAT 58.607 37.500 0.00 0.00 39.77 0.86
3281 3324 4.797743 TGTAGCCATTGCCCACAAATATA 58.202 39.130 0.00 0.00 39.77 0.86
3282 3325 3.641046 TGTAGCCATTGCCCACAAATAT 58.359 40.909 0.00 0.00 39.77 1.28
3284 3327 1.935799 TGTAGCCATTGCCCACAAAT 58.064 45.000 0.00 0.00 39.77 2.32
3285 3328 1.935799 ATGTAGCCATTGCCCACAAA 58.064 45.000 0.00 0.00 39.77 2.83
3290 3341 6.040391 TGTTTATCTAAATGTAGCCATTGCCC 59.960 38.462 0.00 0.00 40.42 5.36
3317 3368 9.675464 AGGATGTACGAGAAAAATGGTTAAATA 57.325 29.630 0.00 0.00 0.00 1.40
3318 3369 8.575649 AGGATGTACGAGAAAAATGGTTAAAT 57.424 30.769 0.00 0.00 0.00 1.40
3319 3370 7.881232 AGAGGATGTACGAGAAAAATGGTTAAA 59.119 33.333 0.00 0.00 0.00 1.52
3320 3371 7.391620 AGAGGATGTACGAGAAAAATGGTTAA 58.608 34.615 0.00 0.00 0.00 2.01
3321 3372 6.942976 AGAGGATGTACGAGAAAAATGGTTA 58.057 36.000 0.00 0.00 0.00 2.85
3334 3385 1.380524 AGGTCACGAGAGGATGTACG 58.619 55.000 0.00 0.00 0.00 3.67
3342 3393 1.003331 GAGCACGATAGGTCACGAGAG 60.003 57.143 0.00 0.00 43.77 3.20
3344 3395 1.018148 AGAGCACGATAGGTCACGAG 58.982 55.000 0.00 0.00 43.77 4.18
3478 3529 1.815003 AGTAATGCTGCTTCAACTGGC 59.185 47.619 0.00 0.00 0.00 4.85
3586 3637 5.009631 CCAATAACCTGAGTCATGTTTGGA 58.990 41.667 19.55 5.71 28.34 3.53
3666 3717 0.101759 GGTTAGTGTATGCTCGCGGA 59.898 55.000 6.13 0.00 0.00 5.54
3669 3720 0.177141 TGGGGTTAGTGTATGCTCGC 59.823 55.000 0.00 0.00 0.00 5.03
3783 3834 1.199615 CTGTCTCCTCCCTTTCCCTC 58.800 60.000 0.00 0.00 0.00 4.30
3799 3850 1.030488 GTCATGGATGCTGCAGCTGT 61.030 55.000 36.61 25.89 42.66 4.40
3834 3885 2.423538 GTCTTGGTCATTTGGGGAATCG 59.576 50.000 0.00 0.00 0.00 3.34
3881 3932 3.095738 GTTGAACAAGTGAACGGTTTCG 58.904 45.455 0.00 0.00 43.02 3.46
3902 3953 1.028905 GTGATCGACCCTCTCCTGAG 58.971 60.000 0.00 0.00 39.92 3.35
3963 4014 3.010420 GTTATGGAGGACTTGTTGAGCC 58.990 50.000 0.00 0.00 0.00 4.70
3984 4035 7.862372 TCTTGTTCTTCGAAATCATTTTTGGAG 59.138 33.333 0.00 0.00 34.28 3.86
4068 4119 0.591659 TCACTCGGCTATTCGGATCG 59.408 55.000 0.00 0.00 0.00 3.69
4182 4233 3.057734 GGACCTACTCAACTGAAACACG 58.942 50.000 0.00 0.00 0.00 4.49
4497 4550 4.226113 AGTCGAAGTTCACTGTGACTAC 57.774 45.455 10.56 7.25 38.60 2.73
4581 4634 4.418013 TTGCTGATAACGTTCCACAATG 57.582 40.909 2.82 0.00 0.00 2.82
4591 4644 4.818534 ATACTGCCATTTGCTGATAACG 57.181 40.909 0.00 0.00 41.11 3.18
4681 4734 0.761187 ATGGCAGATGCATCCGTACT 59.239 50.000 23.06 0.84 44.36 2.73
4734 4863 8.416329 GGGAATGCATCTGTCTTACAAAATAAT 58.584 33.333 0.00 0.00 0.00 1.28
4742 4873 2.576615 GGGGGAATGCATCTGTCTTAC 58.423 52.381 0.00 0.00 0.00 2.34
4769 4900 4.261363 GCTAATTGCTGCTATCTTGTTCCC 60.261 45.833 0.00 0.00 38.95 3.97
4771 4902 5.490139 TGCTAATTGCTGCTATCTTGTTC 57.510 39.130 0.00 0.00 43.37 3.18
4773 4904 4.885907 ACATGCTAATTGCTGCTATCTTGT 59.114 37.500 0.00 0.00 43.37 3.16
4774 4905 5.238868 AGACATGCTAATTGCTGCTATCTTG 59.761 40.000 0.00 0.00 43.37 3.02
4776 4907 4.755629 CAGACATGCTAATTGCTGCTATCT 59.244 41.667 0.00 0.00 43.37 1.98
4777 4908 4.753610 TCAGACATGCTAATTGCTGCTATC 59.246 41.667 0.00 0.00 43.37 2.08
4778 4909 4.514441 GTCAGACATGCTAATTGCTGCTAT 59.486 41.667 0.00 0.00 43.37 2.97
4779 4910 3.873361 GTCAGACATGCTAATTGCTGCTA 59.127 43.478 0.00 0.00 43.37 3.49
4780 4911 2.681848 GTCAGACATGCTAATTGCTGCT 59.318 45.455 0.00 0.00 43.37 4.24
4781 4912 2.421073 TGTCAGACATGCTAATTGCTGC 59.579 45.455 0.00 0.00 43.37 5.25
4782 4913 3.487042 GCTGTCAGACATGCTAATTGCTG 60.487 47.826 2.97 0.00 43.37 4.41
4783 4914 2.681848 GCTGTCAGACATGCTAATTGCT 59.318 45.455 2.97 0.00 43.37 3.91
4784 4915 2.681848 AGCTGTCAGACATGCTAATTGC 59.318 45.455 19.88 11.06 43.25 3.56
4785 4916 3.001026 CGAGCTGTCAGACATGCTAATTG 59.999 47.826 20.79 11.55 34.43 2.32
4786 4917 3.193263 CGAGCTGTCAGACATGCTAATT 58.807 45.455 20.79 6.05 34.43 1.40
4787 4918 2.819115 CGAGCTGTCAGACATGCTAAT 58.181 47.619 20.79 6.32 34.43 1.73
4788 4919 1.737029 GCGAGCTGTCAGACATGCTAA 60.737 52.381 20.79 0.00 34.43 3.09
4815 4956 1.502163 GGATGAGAAGATTGGGCGCG 61.502 60.000 0.00 0.00 0.00 6.86
4826 4974 3.845992 TCCCAACTGAATCTGGATGAGAA 59.154 43.478 0.00 0.00 34.35 2.87
4837 4985 4.990526 AGATTGAACTGTCCCAACTGAAT 58.009 39.130 0.00 0.00 0.00 2.57
4839 4987 3.244561 GGAGATTGAACTGTCCCAACTGA 60.245 47.826 0.00 0.00 0.00 3.41
4880 5029 3.764237 AGTACCGTTTGACAAGGTCAT 57.236 42.857 2.53 0.00 42.40 3.06
4886 5035 3.940209 ATCCGTAGTACCGTTTGACAA 57.060 42.857 0.00 0.00 0.00 3.18
4902 5051 2.313172 GCCTGCTGCATCGTATCCG 61.313 63.158 1.31 0.00 40.77 4.18
4923 5072 0.387565 TGCCATGCTGCATGCTTATG 59.612 50.000 31.84 20.61 40.20 1.90
4953 5103 6.093404 ACTGCATATATCCAATTCTCGTACG 58.907 40.000 9.53 9.53 0.00 3.67
4961 5111 6.959606 AGGTAGGACTGCATATATCCAATT 57.040 37.500 8.62 0.00 34.73 2.32
4964 5114 6.217693 TCTCTAGGTAGGACTGCATATATCCA 59.782 42.308 8.62 0.00 34.73 3.41
4977 5127 2.996631 GTGGAACGTCTCTAGGTAGGA 58.003 52.381 0.00 0.00 0.00 2.94
4992 6074 3.494924 CCATCCTATGCTGAATCGTGGAA 60.495 47.826 0.00 0.00 0.00 3.53
4999 6081 0.767375 ACGGCCATCCTATGCTGAAT 59.233 50.000 2.24 0.00 37.31 2.57
5002 6084 2.256591 GCACGGCCATCCTATGCTG 61.257 63.158 2.24 0.00 38.43 4.41
5003 6085 2.111878 GCACGGCCATCCTATGCT 59.888 61.111 2.24 0.00 38.43 3.79
5004 6086 1.963338 GAGCACGGCCATCCTATGC 60.963 63.158 2.24 2.06 40.47 3.14
5005 6087 1.302033 GGAGCACGGCCATCCTATG 60.302 63.158 2.24 0.00 0.00 2.23
5006 6088 2.520536 GGGAGCACGGCCATCCTAT 61.521 63.158 2.24 0.00 33.40 2.57
5009 6100 4.554036 GAGGGAGCACGGCCATCC 62.554 72.222 2.24 3.96 30.30 3.51
5040 6131 3.529252 CACTGCTGTGAAGAGGGAG 57.471 57.895 18.08 0.00 46.55 4.30
5062 6153 0.960364 GATGGGCGAAACAGGAGCAA 60.960 55.000 0.00 0.00 0.00 3.91
5068 6159 1.815421 CCGGAGATGGGCGAAACAG 60.815 63.158 0.00 0.00 0.00 3.16
5076 6167 4.996434 GGCGATGCCGGAGATGGG 62.996 72.222 5.05 0.00 39.62 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.