Multiple sequence alignment - TraesCS2A01G396000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G396000 chr2A 100.000 4972 0 0 1 4972 649501331 649506302 0.000000e+00 9182.0
1 TraesCS2A01G396000 chr2D 93.842 2907 126 18 1136 4025 503450944 503453814 0.000000e+00 4327.0
2 TraesCS2A01G396000 chr2D 86.759 506 21 19 590 1081 503450458 503450931 5.700000e-144 521.0
3 TraesCS2A01G396000 chr2D 90.610 213 12 7 4027 4238 503454018 503454223 4.900000e-70 276.0
4 TraesCS2A01G396000 chr2B 93.704 2589 108 29 1681 4248 592059145 592061699 0.000000e+00 3827.0
5 TraesCS2A01G396000 chr2B 88.546 1004 61 27 590 1570 592058132 592059104 0.000000e+00 1168.0
6 TraesCS2A01G396000 chr2B 94.467 723 38 2 4251 4972 143187349 143188070 0.000000e+00 1112.0
7 TraesCS2A01G396000 chr2B 93.627 659 40 2 4248 4905 784727013 784726356 0.000000e+00 983.0
8 TraesCS2A01G396000 chr2B 81.522 276 34 9 188 463 717047917 717048175 1.400000e-50 211.0
9 TraesCS2A01G396000 chr3D 96.832 726 22 1 4248 4972 582723296 582724021 0.000000e+00 1212.0
10 TraesCS2A01G396000 chr3D 96.517 402 13 1 4572 4972 93486997 93487398 0.000000e+00 664.0
11 TraesCS2A01G396000 chr3D 95.482 332 15 0 4248 4579 93486859 93486528 9.480000e-147 531.0
12 TraesCS2A01G396000 chr5D 97.734 662 14 1 4312 4972 114363857 114363196 0.000000e+00 1138.0
13 TraesCS2A01G396000 chr5D 80.403 347 40 15 146 491 381415448 381415129 6.430000e-59 239.0
14 TraesCS2A01G396000 chr5D 78.972 214 36 8 281 491 502588547 502588754 2.410000e-28 137.0
15 TraesCS2A01G396000 chr5D 83.077 65 10 1 496 559 63093723 63093787 1.930000e-04 58.4
16 TraesCS2A01G396000 chr4B 94.606 723 38 1 4251 4972 650679131 650679853 0.000000e+00 1118.0
17 TraesCS2A01G396000 chr7A 94.890 724 15 2 4250 4972 81790867 81791569 0.000000e+00 1112.0
18 TraesCS2A01G396000 chr7A 90.345 145 12 1 1 143 36458476 36458620 6.570000e-44 189.0
19 TraesCS2A01G396000 chr7A 87.162 148 17 2 1 146 714723815 714723668 3.080000e-37 167.0
20 TraesCS2A01G396000 chr7A 86.667 150 18 2 1 148 206953101 206952952 1.110000e-36 165.0
21 TraesCS2A01G396000 chr6A 94.207 725 22 5 4248 4972 224092663 224093367 0.000000e+00 1088.0
22 TraesCS2A01G396000 chr6A 88.667 150 15 2 1 148 191845243 191845094 1.100000e-41 182.0
23 TraesCS2A01G396000 chr6B 90.996 733 55 7 4251 4972 559330706 559331438 0.000000e+00 977.0
24 TraesCS2A01G396000 chr6B 86.905 84 10 1 252 335 674975354 674975272 5.300000e-15 93.5
25 TraesCS2A01G396000 chr3A 96.674 481 15 1 4493 4972 124549211 124549691 0.000000e+00 798.0
26 TraesCS2A01G396000 chr3B 85.000 220 29 3 244 463 31262312 31262097 2.330000e-53 220.0
27 TraesCS2A01G396000 chr3B 88.667 150 15 2 1 148 414098348 414098497 1.100000e-41 182.0
28 TraesCS2A01G396000 chr3B 86.755 151 18 2 1 149 73203312 73203462 3.080000e-37 167.0
29 TraesCS2A01G396000 chr4A 87.838 148 16 2 1 146 685823627 685823480 6.620000e-39 172.0
30 TraesCS2A01G396000 chr4D 87.333 150 17 2 1 148 421794645 421794794 2.380000e-38 171.0
31 TraesCS2A01G396000 chr6D 86.842 152 18 2 1 150 320063681 320063530 8.560000e-38 169.0
32 TraesCS2A01G396000 chr1B 86.667 135 17 1 288 422 647543067 647543200 1.120000e-31 148.0
33 TraesCS2A01G396000 chr5A 79.021 143 17 9 350 489 598011350 598011482 8.870000e-13 86.1
34 TraesCS2A01G396000 chr5B 100.000 30 0 0 1600 1629 699382311 699382282 6.950000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G396000 chr2A 649501331 649506302 4971 False 9182.0 9182 100.000000 1 4972 1 chr2A.!!$F1 4971
1 TraesCS2A01G396000 chr2D 503450458 503454223 3765 False 1708.0 4327 90.403667 590 4238 3 chr2D.!!$F1 3648
2 TraesCS2A01G396000 chr2B 592058132 592061699 3567 False 2497.5 3827 91.125000 590 4248 2 chr2B.!!$F3 3658
3 TraesCS2A01G396000 chr2B 143187349 143188070 721 False 1112.0 1112 94.467000 4251 4972 1 chr2B.!!$F1 721
4 TraesCS2A01G396000 chr2B 784726356 784727013 657 True 983.0 983 93.627000 4248 4905 1 chr2B.!!$R1 657
5 TraesCS2A01G396000 chr3D 582723296 582724021 725 False 1212.0 1212 96.832000 4248 4972 1 chr3D.!!$F2 724
6 TraesCS2A01G396000 chr5D 114363196 114363857 661 True 1138.0 1138 97.734000 4312 4972 1 chr5D.!!$R1 660
7 TraesCS2A01G396000 chr4B 650679131 650679853 722 False 1118.0 1118 94.606000 4251 4972 1 chr4B.!!$F1 721
8 TraesCS2A01G396000 chr7A 81790867 81791569 702 False 1112.0 1112 94.890000 4250 4972 1 chr7A.!!$F2 722
9 TraesCS2A01G396000 chr6A 224092663 224093367 704 False 1088.0 1088 94.207000 4248 4972 1 chr6A.!!$F1 724
10 TraesCS2A01G396000 chr6B 559330706 559331438 732 False 977.0 977 90.996000 4251 4972 1 chr6B.!!$F1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 567 0.036306 AAAACCGCGTCCCTCTGAAT 59.964 50.0 4.92 0.0 0.00 2.57 F
1008 1028 0.038744 CCCCCATATGGATGAGCACC 59.961 60.0 24.00 0.0 37.39 5.01 F
1753 1785 0.179936 AGAATAGCAGCAGCCTGGAC 59.820 55.0 0.00 0.0 43.56 4.02 F
2673 2719 0.385974 CTCAACTTCGCCAAAAGCCG 60.386 55.0 0.00 0.0 38.78 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1889 0.313043 TTGGAGAACTCGACGGTGAC 59.687 55.000 0.00 0.00 0.00 3.67 R
1878 1910 0.525668 CCTGGCTTGACGCGTAGTAG 60.526 60.000 13.97 11.16 40.44 2.57 R
2687 2733 1.349026 ACCCTCCTTGCATGGATATCG 59.651 52.381 20.72 9.74 35.30 2.92 R
4268 4520 1.021968 GACACACAACTTCCACCACC 58.978 55.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.922931 TCTATTTGATATTGGAGCTTATGCAA 57.077 30.769 3.16 0.00 44.01 4.08
26 27 9.353431 TCTATTTGATATTGGAGCTTATGCAAA 57.647 29.630 3.16 0.00 43.04 3.68
27 28 9.622004 CTATTTGATATTGGAGCTTATGCAAAG 57.378 33.333 3.16 0.00 43.04 2.77
28 29 7.643569 TTTGATATTGGAGCTTATGCAAAGA 57.356 32.000 11.34 0.00 43.04 2.52
29 30 7.828508 TTGATATTGGAGCTTATGCAAAGAT 57.171 32.000 11.34 6.08 43.04 2.40
30 31 7.828508 TGATATTGGAGCTTATGCAAAGATT 57.171 32.000 11.34 1.20 43.04 2.40
31 32 7.654568 TGATATTGGAGCTTATGCAAAGATTG 58.345 34.615 11.34 0.00 43.04 2.67
32 33 5.927281 ATTGGAGCTTATGCAAAGATTGT 57.073 34.783 11.34 0.00 43.04 2.71
33 34 5.726980 TTGGAGCTTATGCAAAGATTGTT 57.273 34.783 11.34 0.00 42.74 2.83
34 35 5.063180 TGGAGCTTATGCAAAGATTGTTG 57.937 39.130 11.34 0.00 42.74 3.33
35 36 4.082081 TGGAGCTTATGCAAAGATTGTTGG 60.082 41.667 11.34 0.00 42.74 3.77
36 37 4.082026 GGAGCTTATGCAAAGATTGTTGGT 60.082 41.667 11.34 0.00 42.74 3.67
37 38 5.473039 GAGCTTATGCAAAGATTGTTGGTT 58.527 37.500 11.34 0.00 42.74 3.67
38 39 6.350110 GGAGCTTATGCAAAGATTGTTGGTTA 60.350 38.462 11.34 0.00 42.74 2.85
39 40 6.991938 AGCTTATGCAAAGATTGTTGGTTAA 58.008 32.000 11.34 0.00 42.74 2.01
40 41 7.614494 AGCTTATGCAAAGATTGTTGGTTAAT 58.386 30.769 11.34 0.00 42.74 1.40
41 42 7.761249 AGCTTATGCAAAGATTGTTGGTTAATC 59.239 33.333 11.34 0.00 42.74 1.75
42 43 7.761249 GCTTATGCAAAGATTGTTGGTTAATCT 59.239 33.333 11.34 0.00 41.21 2.40
45 46 7.517614 TGCAAAGATTGTTGGTTAATCTACA 57.482 32.000 0.00 0.00 42.43 2.74
46 47 8.121305 TGCAAAGATTGTTGGTTAATCTACAT 57.879 30.769 3.82 0.00 42.43 2.29
47 48 9.237187 TGCAAAGATTGTTGGTTAATCTACATA 57.763 29.630 3.82 0.00 42.43 2.29
48 49 9.503427 GCAAAGATTGTTGGTTAATCTACATAC 57.497 33.333 3.82 2.39 42.43 2.39
52 53 9.959721 AGATTGTTGGTTAATCTACATACAACT 57.040 29.630 3.82 0.00 41.69 3.16
56 57 9.562408 TGTTGGTTAATCTACATACAACTTTGA 57.438 29.630 0.00 0.00 37.99 2.69
65 66 8.988064 TCTACATACAACTTTGATCTCTTCAC 57.012 34.615 0.00 0.00 32.84 3.18
66 67 8.585018 TCTACATACAACTTTGATCTCTTCACA 58.415 33.333 0.00 0.00 32.84 3.58
67 68 9.376075 CTACATACAACTTTGATCTCTTCACAT 57.624 33.333 0.00 0.00 32.84 3.21
68 69 8.627208 ACATACAACTTTGATCTCTTCACATT 57.373 30.769 0.00 0.00 32.84 2.71
69 70 9.071276 ACATACAACTTTGATCTCTTCACATTT 57.929 29.630 0.00 0.00 32.84 2.32
79 80 8.158169 TGATCTCTTCACATTTATTACATGCC 57.842 34.615 0.00 0.00 0.00 4.40
80 81 7.774625 TGATCTCTTCACATTTATTACATGCCA 59.225 33.333 0.00 0.00 0.00 4.92
81 82 7.320443 TCTCTTCACATTTATTACATGCCAC 57.680 36.000 0.00 0.00 0.00 5.01
82 83 6.883756 TCTCTTCACATTTATTACATGCCACA 59.116 34.615 0.00 0.00 0.00 4.17
83 84 7.557358 TCTCTTCACATTTATTACATGCCACAT 59.443 33.333 0.00 0.00 0.00 3.21
84 85 8.065473 TCTTCACATTTATTACATGCCACATT 57.935 30.769 0.00 0.00 0.00 2.71
85 86 9.183368 TCTTCACATTTATTACATGCCACATTA 57.817 29.630 0.00 0.00 0.00 1.90
86 87 9.970395 CTTCACATTTATTACATGCCACATTAT 57.030 29.630 0.00 0.00 0.00 1.28
87 88 9.964303 TTCACATTTATTACATGCCACATTATC 57.036 29.630 0.00 0.00 0.00 1.75
88 89 9.129532 TCACATTTATTACATGCCACATTATCA 57.870 29.630 0.00 0.00 0.00 2.15
89 90 9.184062 CACATTTATTACATGCCACATTATCAC 57.816 33.333 0.00 0.00 0.00 3.06
90 91 9.135189 ACATTTATTACATGCCACATTATCACT 57.865 29.630 0.00 0.00 0.00 3.41
94 95 9.791801 TTATTACATGCCACATTATCACTATGT 57.208 29.630 0.00 0.00 36.70 2.29
95 96 7.728847 TTACATGCCACATTATCACTATGTC 57.271 36.000 0.00 0.00 34.11 3.06
96 97 5.933617 ACATGCCACATTATCACTATGTCT 58.066 37.500 0.00 0.00 34.11 3.41
97 98 6.359804 ACATGCCACATTATCACTATGTCTT 58.640 36.000 0.00 0.00 34.11 3.01
98 99 7.508687 ACATGCCACATTATCACTATGTCTTA 58.491 34.615 0.00 0.00 34.11 2.10
99 100 7.658982 ACATGCCACATTATCACTATGTCTTAG 59.341 37.037 0.00 0.00 34.11 2.18
100 101 6.524734 TGCCACATTATCACTATGTCTTAGG 58.475 40.000 0.00 0.00 34.11 2.69
101 102 6.099701 TGCCACATTATCACTATGTCTTAGGT 59.900 38.462 0.00 0.00 34.11 3.08
102 103 6.425114 GCCACATTATCACTATGTCTTAGGTG 59.575 42.308 0.00 0.00 34.11 4.00
103 104 7.686859 GCCACATTATCACTATGTCTTAGGTGA 60.687 40.741 0.00 0.00 34.11 4.02
104 105 7.653713 CCACATTATCACTATGTCTTAGGTGAC 59.346 40.741 0.00 0.00 34.11 3.67
117 118 8.684386 TGTCTTAGGTGACAAATTTATCAACA 57.316 30.769 16.46 6.33 43.08 3.33
118 119 8.564574 TGTCTTAGGTGACAAATTTATCAACAC 58.435 33.333 16.46 6.52 43.08 3.32
119 120 7.744715 GTCTTAGGTGACAAATTTATCAACACG 59.255 37.037 16.46 4.65 34.82 4.49
120 121 7.442969 TCTTAGGTGACAAATTTATCAACACGT 59.557 33.333 16.46 12.52 34.82 4.49
121 122 8.604640 TTAGGTGACAAATTTATCAACACGTA 57.395 30.769 16.46 11.75 34.82 3.57
122 123 7.681939 AGGTGACAAATTTATCAACACGTAT 57.318 32.000 16.46 0.00 34.82 3.06
123 124 7.748847 AGGTGACAAATTTATCAACACGTATC 58.251 34.615 16.46 0.00 34.82 2.24
124 125 7.606456 AGGTGACAAATTTATCAACACGTATCT 59.394 33.333 16.46 0.00 34.82 1.98
125 126 8.234546 GGTGACAAATTTATCAACACGTATCTT 58.765 33.333 9.63 0.00 32.50 2.40
142 143 9.586150 CACGTATCTTACAATTATTGAAGATGC 57.414 33.333 25.15 23.57 37.70 3.91
143 144 9.547753 ACGTATCTTACAATTATTGAAGATGCT 57.452 29.630 25.15 17.26 37.53 3.79
150 151 9.679661 TTACAATTATTGAAGATGCTCTTACCA 57.320 29.630 12.28 0.00 36.73 3.25
151 152 8.218338 ACAATTATTGAAGATGCTCTTACCAG 57.782 34.615 12.28 0.00 36.73 4.00
152 153 6.874288 ATTATTGAAGATGCTCTTACCAGC 57.126 37.500 0.00 0.00 36.73 4.85
153 154 3.988976 TTGAAGATGCTCTTACCAGCT 57.011 42.857 0.00 0.00 36.73 4.24
154 155 3.257469 TGAAGATGCTCTTACCAGCTG 57.743 47.619 6.78 6.78 36.73 4.24
155 156 2.093288 TGAAGATGCTCTTACCAGCTGG 60.093 50.000 31.60 31.60 36.73 4.85
156 157 0.179936 AGATGCTCTTACCAGCTGGC 59.820 55.000 33.06 17.61 40.39 4.85
157 158 0.817229 GATGCTCTTACCAGCTGGCC 60.817 60.000 33.06 13.95 40.39 5.36
158 159 2.512515 GCTCTTACCAGCTGGCCG 60.513 66.667 33.06 20.14 39.32 6.13
159 160 2.512515 CTCTTACCAGCTGGCCGC 60.513 66.667 33.06 11.02 39.32 6.53
160 161 3.315142 CTCTTACCAGCTGGCCGCA 62.315 63.158 33.06 12.71 42.61 5.69
161 162 3.127533 CTTACCAGCTGGCCGCAC 61.128 66.667 33.06 1.95 42.61 5.34
162 163 3.899981 CTTACCAGCTGGCCGCACA 62.900 63.158 33.06 9.16 42.61 4.57
163 164 3.266686 TTACCAGCTGGCCGCACAT 62.267 57.895 33.06 13.90 42.61 3.21
164 165 3.974835 TACCAGCTGGCCGCACATG 62.975 63.158 33.06 5.94 42.61 3.21
176 177 4.989588 CACATGCGTGCATAGCTG 57.010 55.556 16.27 13.70 36.06 4.24
187 188 4.899239 ATAGCTGCGGCCGTGCTC 62.899 66.667 37.15 19.91 39.73 4.26
280 281 3.767301 ACGCATCGTCATGTCACG 58.233 55.556 0.69 0.69 41.36 4.35
281 282 2.317689 CGCATCGTCATGTCACGC 59.682 61.111 2.23 0.00 39.74 5.34
282 283 2.703409 GCATCGTCATGTCACGCC 59.297 61.111 2.23 0.00 39.74 5.68
283 284 2.997869 CATCGTCATGTCACGCCG 59.002 61.111 2.23 0.00 39.74 6.46
284 285 2.885644 ATCGTCATGTCACGCCGC 60.886 61.111 2.23 0.00 39.74 6.53
285 286 3.641159 ATCGTCATGTCACGCCGCA 62.641 57.895 2.23 0.00 39.74 5.69
286 287 4.134187 CGTCATGTCACGCCGCAC 62.134 66.667 0.00 0.00 31.96 5.34
287 288 2.738521 GTCATGTCACGCCGCACT 60.739 61.111 0.00 0.00 0.00 4.40
288 289 2.432456 TCATGTCACGCCGCACTC 60.432 61.111 0.00 0.00 0.00 3.51
289 290 3.842126 CATGTCACGCCGCACTCG 61.842 66.667 0.00 0.00 0.00 4.18
349 350 3.838271 CGCCTCGCCTTGCTCCTA 61.838 66.667 0.00 0.00 0.00 2.94
350 351 2.202946 GCCTCGCCTTGCTCCTAC 60.203 66.667 0.00 0.00 0.00 3.18
351 352 2.105128 CCTCGCCTTGCTCCTACG 59.895 66.667 0.00 0.00 0.00 3.51
352 353 2.583593 CTCGCCTTGCTCCTACGC 60.584 66.667 0.00 0.00 0.00 4.42
353 354 4.143333 TCGCCTTGCTCCTACGCC 62.143 66.667 0.00 0.00 0.00 5.68
355 356 4.096003 GCCTTGCTCCTACGCCCA 62.096 66.667 0.00 0.00 0.00 5.36
356 357 2.125106 CCTTGCTCCTACGCCCAC 60.125 66.667 0.00 0.00 0.00 4.61
370 371 4.657824 CCACGTTCGGTCGGTGCT 62.658 66.667 0.00 0.00 34.94 4.40
371 372 3.103911 CACGTTCGGTCGGTGCTC 61.104 66.667 0.00 0.00 34.94 4.26
372 373 4.353437 ACGTTCGGTCGGTGCTCC 62.353 66.667 0.00 0.00 34.94 4.70
373 374 4.052229 CGTTCGGTCGGTGCTCCT 62.052 66.667 2.85 0.00 0.00 3.69
374 375 2.432628 GTTCGGTCGGTGCTCCTG 60.433 66.667 2.85 0.00 0.00 3.86
375 376 4.373116 TTCGGTCGGTGCTCCTGC 62.373 66.667 2.85 0.00 40.20 4.85
384 385 2.031012 TGCTCCTGCAGACGTTGG 59.969 61.111 17.39 0.00 45.31 3.77
385 386 3.426568 GCTCCTGCAGACGTTGGC 61.427 66.667 17.39 6.07 39.41 4.52
386 387 2.743928 CTCCTGCAGACGTTGGCC 60.744 66.667 17.39 0.00 0.00 5.36
387 388 3.241530 TCCTGCAGACGTTGGCCT 61.242 61.111 17.39 0.00 0.00 5.19
388 389 2.743928 CCTGCAGACGTTGGCCTC 60.744 66.667 17.39 0.00 0.00 4.70
389 390 3.114616 CTGCAGACGTTGGCCTCG 61.115 66.667 8.42 16.71 0.00 4.63
403 404 2.829003 CTCGCCTCTCCGCACCTA 60.829 66.667 0.00 0.00 0.00 3.08
404 405 2.829003 TCGCCTCTCCGCACCTAG 60.829 66.667 0.00 0.00 0.00 3.02
405 406 4.577246 CGCCTCTCCGCACCTAGC 62.577 72.222 0.00 0.00 40.87 3.42
406 407 4.228567 GCCTCTCCGCACCTAGCC 62.229 72.222 0.00 0.00 41.38 3.93
407 408 3.905678 CCTCTCCGCACCTAGCCG 61.906 72.222 0.00 0.00 41.38 5.52
408 409 4.577246 CTCTCCGCACCTAGCCGC 62.577 72.222 0.00 0.00 41.38 6.53
410 411 4.880537 CTCCGCACCTAGCCGCTG 62.881 72.222 2.16 0.00 41.38 5.18
417 418 4.940593 CCTAGCCGCTGCGAGCTC 62.941 72.222 30.92 15.51 44.33 4.09
418 419 4.940593 CTAGCCGCTGCGAGCTCC 62.941 72.222 30.92 12.89 44.33 4.70
429 430 2.765807 GAGCTCCCCTGCCTGCTA 60.766 66.667 0.87 0.00 35.76 3.49
430 431 3.086600 AGCTCCCCTGCCTGCTAC 61.087 66.667 0.00 0.00 33.64 3.58
431 432 3.402681 GCTCCCCTGCCTGCTACA 61.403 66.667 0.00 0.00 0.00 2.74
432 433 2.750657 GCTCCCCTGCCTGCTACAT 61.751 63.158 0.00 0.00 0.00 2.29
433 434 1.147824 CTCCCCTGCCTGCTACATG 59.852 63.158 0.00 0.00 0.00 3.21
434 435 1.616327 TCCCCTGCCTGCTACATGT 60.616 57.895 2.69 2.69 0.00 3.21
435 436 1.207488 TCCCCTGCCTGCTACATGTT 61.207 55.000 2.30 0.00 0.00 2.71
436 437 0.323725 CCCCTGCCTGCTACATGTTT 60.324 55.000 2.30 0.00 0.00 2.83
437 438 0.813184 CCCTGCCTGCTACATGTTTG 59.187 55.000 2.30 0.00 0.00 2.93
438 439 1.614051 CCCTGCCTGCTACATGTTTGA 60.614 52.381 2.30 0.00 0.00 2.69
439 440 2.372264 CCTGCCTGCTACATGTTTGAT 58.628 47.619 2.30 0.00 0.00 2.57
440 441 3.544684 CCTGCCTGCTACATGTTTGATA 58.455 45.455 2.30 0.00 0.00 2.15
441 442 3.947196 CCTGCCTGCTACATGTTTGATAA 59.053 43.478 2.30 0.00 0.00 1.75
442 443 4.398988 CCTGCCTGCTACATGTTTGATAAA 59.601 41.667 2.30 0.00 0.00 1.40
443 444 5.105797 CCTGCCTGCTACATGTTTGATAAAA 60.106 40.000 2.30 0.00 0.00 1.52
444 445 6.406177 CCTGCCTGCTACATGTTTGATAAAAT 60.406 38.462 2.30 0.00 0.00 1.82
445 446 6.331845 TGCCTGCTACATGTTTGATAAAATG 58.668 36.000 2.30 0.00 0.00 2.32
446 447 5.232838 GCCTGCTACATGTTTGATAAAATGC 59.767 40.000 2.30 0.00 0.00 3.56
447 448 6.567050 CCTGCTACATGTTTGATAAAATGCT 58.433 36.000 2.30 0.00 0.00 3.79
448 449 7.681782 GCCTGCTACATGTTTGATAAAATGCTA 60.682 37.037 2.30 0.00 0.00 3.49
449 450 7.859377 CCTGCTACATGTTTGATAAAATGCTAG 59.141 37.037 2.30 0.00 0.00 3.42
450 451 8.504812 TGCTACATGTTTGATAAAATGCTAGA 57.495 30.769 2.30 0.00 0.00 2.43
451 452 8.955388 TGCTACATGTTTGATAAAATGCTAGAA 58.045 29.630 2.30 0.00 0.00 2.10
452 453 9.226345 GCTACATGTTTGATAAAATGCTAGAAC 57.774 33.333 2.30 0.00 0.00 3.01
453 454 9.425893 CTACATGTTTGATAAAATGCTAGAACG 57.574 33.333 2.30 0.00 0.00 3.95
454 455 7.250569 ACATGTTTGATAAAATGCTAGAACGG 58.749 34.615 0.00 0.00 0.00 4.44
455 456 7.120579 ACATGTTTGATAAAATGCTAGAACGGA 59.879 33.333 0.00 0.00 0.00 4.69
456 457 6.837992 TGTTTGATAAAATGCTAGAACGGAC 58.162 36.000 0.00 0.00 0.00 4.79
457 458 6.428465 TGTTTGATAAAATGCTAGAACGGACA 59.572 34.615 0.00 0.00 0.00 4.02
458 459 7.120579 TGTTTGATAAAATGCTAGAACGGACAT 59.879 33.333 0.00 0.00 0.00 3.06
459 460 6.603237 TGATAAAATGCTAGAACGGACATG 57.397 37.500 0.00 0.00 0.00 3.21
460 461 6.112734 TGATAAAATGCTAGAACGGACATGT 58.887 36.000 0.00 0.00 0.00 3.21
461 462 4.946784 AAAATGCTAGAACGGACATGTC 57.053 40.909 17.91 17.91 0.00 3.06
462 463 3.610040 AATGCTAGAACGGACATGTCA 57.390 42.857 26.47 4.37 0.00 3.58
463 464 3.610040 ATGCTAGAACGGACATGTCAA 57.390 42.857 26.47 4.45 0.00 3.18
464 465 3.394674 TGCTAGAACGGACATGTCAAA 57.605 42.857 26.47 4.79 0.00 2.69
465 466 3.734463 TGCTAGAACGGACATGTCAAAA 58.266 40.909 26.47 5.45 0.00 2.44
466 467 4.323417 TGCTAGAACGGACATGTCAAAAT 58.677 39.130 26.47 9.97 0.00 1.82
467 468 4.154015 TGCTAGAACGGACATGTCAAAATG 59.846 41.667 26.47 12.73 0.00 2.32
468 469 4.437390 GCTAGAACGGACATGTCAAAATGG 60.437 45.833 26.47 11.26 31.46 3.16
469 470 2.819608 AGAACGGACATGTCAAAATGGG 59.180 45.455 26.47 9.02 31.46 4.00
470 471 2.286365 ACGGACATGTCAAAATGGGT 57.714 45.000 26.47 9.59 31.46 4.51
471 472 2.593026 ACGGACATGTCAAAATGGGTT 58.407 42.857 26.47 0.00 31.46 4.11
472 473 2.962421 ACGGACATGTCAAAATGGGTTT 59.038 40.909 26.47 0.00 31.46 3.27
473 474 4.145807 ACGGACATGTCAAAATGGGTTTA 58.854 39.130 26.47 0.00 31.46 2.01
474 475 4.585162 ACGGACATGTCAAAATGGGTTTAA 59.415 37.500 26.47 0.00 31.46 1.52
475 476 4.920927 CGGACATGTCAAAATGGGTTTAAC 59.079 41.667 26.47 3.79 31.46 2.01
476 477 5.278758 CGGACATGTCAAAATGGGTTTAACT 60.279 40.000 26.47 0.00 31.46 2.24
477 478 6.072397 CGGACATGTCAAAATGGGTTTAACTA 60.072 38.462 26.47 0.00 31.46 2.24
478 479 7.088272 GGACATGTCAAAATGGGTTTAACTAC 58.912 38.462 26.47 0.00 31.46 2.73
479 480 6.988522 ACATGTCAAAATGGGTTTAACTACC 58.011 36.000 0.00 0.00 37.47 3.18
480 481 5.692613 TGTCAAAATGGGTTTAACTACCG 57.307 39.130 0.00 0.00 39.18 4.02
481 482 5.131784 TGTCAAAATGGGTTTAACTACCGT 58.868 37.500 0.00 0.00 39.18 4.83
482 483 5.593502 TGTCAAAATGGGTTTAACTACCGTT 59.406 36.000 0.00 0.00 39.18 4.44
483 484 5.916320 GTCAAAATGGGTTTAACTACCGTTG 59.084 40.000 0.00 0.00 39.18 4.10
484 485 5.009811 TCAAAATGGGTTTAACTACCGTTGG 59.990 40.000 0.00 0.00 39.18 3.77
485 486 2.565046 TGGGTTTAACTACCGTTGGG 57.435 50.000 0.00 0.00 39.18 4.12
486 487 1.167851 GGGTTTAACTACCGTTGGGC 58.832 55.000 0.00 0.00 39.18 5.36
487 488 1.545204 GGGTTTAACTACCGTTGGGCA 60.545 52.381 0.00 0.00 39.18 5.36
488 489 1.536766 GGTTTAACTACCGTTGGGCAC 59.463 52.381 0.00 0.00 36.48 5.01
489 490 2.220313 GTTTAACTACCGTTGGGCACA 58.780 47.619 0.00 0.00 36.48 4.57
490 491 1.881591 TTAACTACCGTTGGGCACAC 58.118 50.000 0.00 0.00 36.48 3.82
491 492 0.319727 TAACTACCGTTGGGCACACG 60.320 55.000 0.00 0.00 36.48 4.49
496 497 4.287580 CGTTGGGCACACGGATAA 57.712 55.556 0.00 0.00 0.00 1.75
497 498 2.545875 CGTTGGGCACACGGATAAA 58.454 52.632 0.00 0.00 0.00 1.40
498 499 0.875728 CGTTGGGCACACGGATAAAA 59.124 50.000 0.00 0.00 0.00 1.52
499 500 1.135803 CGTTGGGCACACGGATAAAAG 60.136 52.381 0.00 0.00 0.00 2.27
500 501 0.885196 TTGGGCACACGGATAAAAGC 59.115 50.000 0.00 0.00 0.00 3.51
501 502 1.302383 TGGGCACACGGATAAAAGCG 61.302 55.000 0.00 0.00 0.00 4.68
502 503 1.427819 GGCACACGGATAAAAGCGG 59.572 57.895 0.00 0.00 0.00 5.52
503 504 1.022451 GGCACACGGATAAAAGCGGA 61.022 55.000 0.00 0.00 0.00 5.54
504 505 0.096454 GCACACGGATAAAAGCGGAC 59.904 55.000 0.00 0.00 0.00 4.79
505 506 1.434555 CACACGGATAAAAGCGGACA 58.565 50.000 0.00 0.00 0.00 4.02
506 507 1.801771 CACACGGATAAAAGCGGACAA 59.198 47.619 0.00 0.00 0.00 3.18
507 508 2.224549 CACACGGATAAAAGCGGACAAA 59.775 45.455 0.00 0.00 0.00 2.83
508 509 2.224784 ACACGGATAAAAGCGGACAAAC 59.775 45.455 0.00 0.00 0.00 2.93
509 510 2.224549 CACGGATAAAAGCGGACAAACA 59.775 45.455 0.00 0.00 0.00 2.83
510 511 2.224784 ACGGATAAAAGCGGACAAACAC 59.775 45.455 0.00 0.00 0.00 3.32
511 512 2.723618 CGGATAAAAGCGGACAAACACG 60.724 50.000 0.00 0.00 0.00 4.49
512 513 2.224784 GGATAAAAGCGGACAAACACGT 59.775 45.455 0.00 0.00 0.00 4.49
513 514 3.476181 GATAAAAGCGGACAAACACGTC 58.524 45.455 0.00 0.00 35.03 4.34
518 519 4.364409 GGACAAACACGTCCGCGC 62.364 66.667 0.00 0.00 45.77 6.86
519 520 4.696172 GACAAACACGTCCGCGCG 62.696 66.667 25.67 25.67 42.83 6.86
529 530 4.380781 TCCGCGCGGTCAATCCAA 62.381 61.111 44.16 23.32 36.47 3.53
530 531 3.427425 CCGCGCGGTCAATCCAAA 61.427 61.111 39.71 0.00 35.57 3.28
531 532 2.202298 CGCGCGGTCAATCCAAAC 60.202 61.111 24.84 0.00 35.57 2.93
532 533 2.202298 GCGCGGTCAATCCAAACG 60.202 61.111 8.83 0.00 35.57 3.60
533 534 2.478746 CGCGGTCAATCCAAACGG 59.521 61.111 0.00 0.00 35.57 4.44
534 535 2.030401 CGCGGTCAATCCAAACGGA 61.030 57.895 0.00 0.00 36.85 4.69
535 536 1.500396 GCGGTCAATCCAAACGGAC 59.500 57.895 0.00 0.00 34.62 4.79
536 537 1.785321 CGGTCAATCCAAACGGACG 59.215 57.895 0.00 0.00 34.62 4.79
537 538 0.668096 CGGTCAATCCAAACGGACGA 60.668 55.000 0.00 0.00 34.62 4.20
538 539 1.515081 GGTCAATCCAAACGGACGAA 58.485 50.000 0.00 0.00 34.62 3.85
539 540 1.874872 GGTCAATCCAAACGGACGAAA 59.125 47.619 0.00 0.00 34.62 3.46
540 541 2.291190 GGTCAATCCAAACGGACGAAAA 59.709 45.455 0.00 0.00 34.62 2.29
541 542 3.243134 GGTCAATCCAAACGGACGAAAAA 60.243 43.478 0.00 0.00 34.62 1.94
542 543 3.727227 GTCAATCCAAACGGACGAAAAAC 59.273 43.478 0.00 0.00 34.62 2.43
543 544 3.377485 TCAATCCAAACGGACGAAAAACA 59.623 39.130 0.00 0.00 34.62 2.83
544 545 3.619233 ATCCAAACGGACGAAAAACAG 57.381 42.857 0.00 0.00 34.62 3.16
545 546 2.630158 TCCAAACGGACGAAAAACAGA 58.370 42.857 0.00 0.00 0.00 3.41
546 547 2.352342 TCCAAACGGACGAAAAACAGAC 59.648 45.455 0.00 0.00 0.00 3.51
547 548 2.096174 CCAAACGGACGAAAAACAGACA 59.904 45.455 0.00 0.00 0.00 3.41
548 549 3.426426 CCAAACGGACGAAAAACAGACAA 60.426 43.478 0.00 0.00 0.00 3.18
549 550 4.159857 CAAACGGACGAAAAACAGACAAA 58.840 39.130 0.00 0.00 0.00 2.83
550 551 4.422546 AACGGACGAAAAACAGACAAAA 57.577 36.364 0.00 0.00 0.00 2.44
551 552 3.750512 ACGGACGAAAAACAGACAAAAC 58.249 40.909 0.00 0.00 0.00 2.43
552 553 3.103007 CGGACGAAAAACAGACAAAACC 58.897 45.455 0.00 0.00 0.00 3.27
553 554 3.103007 GGACGAAAAACAGACAAAACCG 58.897 45.455 0.00 0.00 0.00 4.44
554 555 2.521996 ACGAAAAACAGACAAAACCGC 58.478 42.857 0.00 0.00 0.00 5.68
555 556 1.511147 CGAAAAACAGACAAAACCGCG 59.489 47.619 0.00 0.00 0.00 6.46
556 557 2.521996 GAAAAACAGACAAAACCGCGT 58.478 42.857 4.92 0.00 0.00 6.01
557 558 2.182904 AAAACAGACAAAACCGCGTC 57.817 45.000 4.92 0.00 0.00 5.19
558 559 0.379316 AAACAGACAAAACCGCGTCC 59.621 50.000 4.92 0.00 32.33 4.79
559 560 1.441732 AACAGACAAAACCGCGTCCC 61.442 55.000 4.92 0.00 32.33 4.46
560 561 1.597027 CAGACAAAACCGCGTCCCT 60.597 57.895 4.92 0.00 32.33 4.20
561 562 1.301479 AGACAAAACCGCGTCCCTC 60.301 57.895 4.92 0.00 32.33 4.30
562 563 1.301479 GACAAAACCGCGTCCCTCT 60.301 57.895 4.92 0.00 0.00 3.69
563 564 1.566018 GACAAAACCGCGTCCCTCTG 61.566 60.000 4.92 0.00 0.00 3.35
564 565 1.301401 CAAAACCGCGTCCCTCTGA 60.301 57.895 4.92 0.00 0.00 3.27
565 566 0.882927 CAAAACCGCGTCCCTCTGAA 60.883 55.000 4.92 0.00 0.00 3.02
566 567 0.036306 AAAACCGCGTCCCTCTGAAT 59.964 50.000 4.92 0.00 0.00 2.57
567 568 0.391263 AAACCGCGTCCCTCTGAATC 60.391 55.000 4.92 0.00 0.00 2.52
568 569 1.258445 AACCGCGTCCCTCTGAATCT 61.258 55.000 4.92 0.00 0.00 2.40
569 570 1.227089 CCGCGTCCCTCTGAATCTG 60.227 63.158 4.92 0.00 0.00 2.90
570 571 1.513158 CGCGTCCCTCTGAATCTGT 59.487 57.895 0.00 0.00 0.00 3.41
571 572 0.803768 CGCGTCCCTCTGAATCTGTG 60.804 60.000 0.00 0.00 0.00 3.66
572 573 1.086634 GCGTCCCTCTGAATCTGTGC 61.087 60.000 0.00 0.00 0.00 4.57
573 574 0.534412 CGTCCCTCTGAATCTGTGCT 59.466 55.000 0.00 0.00 0.00 4.40
574 575 1.066573 CGTCCCTCTGAATCTGTGCTT 60.067 52.381 0.00 0.00 0.00 3.91
575 576 2.613977 CGTCCCTCTGAATCTGTGCTTT 60.614 50.000 0.00 0.00 0.00 3.51
576 577 2.746362 GTCCCTCTGAATCTGTGCTTTG 59.254 50.000 0.00 0.00 0.00 2.77
577 578 2.089980 CCCTCTGAATCTGTGCTTTGG 58.910 52.381 0.00 0.00 0.00 3.28
578 579 2.290514 CCCTCTGAATCTGTGCTTTGGA 60.291 50.000 0.00 0.00 0.00 3.53
579 580 3.008330 CCTCTGAATCTGTGCTTTGGAG 58.992 50.000 0.00 0.00 0.00 3.86
580 581 3.558746 CCTCTGAATCTGTGCTTTGGAGT 60.559 47.826 0.00 0.00 0.00 3.85
581 582 4.070716 CTCTGAATCTGTGCTTTGGAGTT 58.929 43.478 0.00 0.00 0.00 3.01
582 583 3.817084 TCTGAATCTGTGCTTTGGAGTTG 59.183 43.478 0.00 0.00 0.00 3.16
583 584 3.554934 TGAATCTGTGCTTTGGAGTTGT 58.445 40.909 0.00 0.00 0.00 3.32
584 585 3.953612 TGAATCTGTGCTTTGGAGTTGTT 59.046 39.130 0.00 0.00 0.00 2.83
585 586 4.036734 TGAATCTGTGCTTTGGAGTTGTTC 59.963 41.667 0.00 0.00 0.00 3.18
586 587 3.281727 TCTGTGCTTTGGAGTTGTTCT 57.718 42.857 0.00 0.00 0.00 3.01
587 588 3.620488 TCTGTGCTTTGGAGTTGTTCTT 58.380 40.909 0.00 0.00 0.00 2.52
588 589 3.378112 TCTGTGCTTTGGAGTTGTTCTTG 59.622 43.478 0.00 0.00 0.00 3.02
592 593 4.574828 GTGCTTTGGAGTTGTTCTTGTAGA 59.425 41.667 0.00 0.00 0.00 2.59
630 631 0.585357 GATCGCATGGCAGACATCAC 59.415 55.000 0.00 0.00 37.84 3.06
646 647 1.302511 CACCAAGTTGACCGAGGGG 60.303 63.158 3.87 0.00 40.11 4.79
652 653 2.683933 TTGACCGAGGGGAGAGCC 60.684 66.667 0.00 0.00 36.97 4.70
778 789 7.553881 AATGGTTGACAGTAATATACACAGC 57.446 36.000 0.00 0.00 0.00 4.40
780 791 4.814771 GGTTGACAGTAATATACACAGCCC 59.185 45.833 0.00 0.00 30.56 5.19
796 808 2.101249 CAGCCCCGCAAATGATTACAAT 59.899 45.455 0.00 0.00 0.00 2.71
797 809 3.317711 CAGCCCCGCAAATGATTACAATA 59.682 43.478 0.00 0.00 0.00 1.90
798 810 3.317993 AGCCCCGCAAATGATTACAATAC 59.682 43.478 0.00 0.00 0.00 1.89
799 811 3.851838 GCCCCGCAAATGATTACAATACG 60.852 47.826 0.00 0.00 0.00 3.06
812 824 8.913487 TGATTACAATACGTATCCTCTCTACA 57.087 34.615 8.86 1.11 0.00 2.74
856 872 3.491639 GCATACGGTGATAAATACGTGCA 59.508 43.478 0.00 0.00 40.12 4.57
857 873 4.376008 GCATACGGTGATAAATACGTGCAG 60.376 45.833 0.00 0.00 40.12 4.41
858 874 1.931172 ACGGTGATAAATACGTGCAGC 59.069 47.619 0.00 0.00 38.24 5.25
859 875 2.201732 CGGTGATAAATACGTGCAGCT 58.798 47.619 0.00 0.00 0.00 4.24
993 1013 9.676129 TCCATTCTAATTATATATCTCTCCCCC 57.324 37.037 0.00 0.00 0.00 5.40
994 1014 9.452517 CCATTCTAATTATATATCTCTCCCCCA 57.547 37.037 0.00 0.00 0.00 4.96
1002 1022 8.979195 TTATATATCTCTCCCCCATATGGATG 57.021 38.462 24.00 13.19 37.39 3.51
1003 1023 3.880295 ATCTCTCCCCCATATGGATGA 57.120 47.619 24.00 16.59 37.39 2.92
1004 1024 3.196415 TCTCTCCCCCATATGGATGAG 57.804 52.381 24.00 24.03 37.39 2.90
1005 1025 1.558756 CTCTCCCCCATATGGATGAGC 59.441 57.143 24.00 0.00 37.39 4.26
1006 1026 1.132430 TCTCCCCCATATGGATGAGCA 60.132 52.381 24.00 13.53 37.39 4.26
1007 1027 1.004044 CTCCCCCATATGGATGAGCAC 59.996 57.143 24.00 0.00 37.39 4.40
1008 1028 0.038744 CCCCCATATGGATGAGCACC 59.961 60.000 24.00 0.00 37.39 5.01
1038 1058 1.006102 ACGGCACACACTCTACTGC 60.006 57.895 0.00 0.00 0.00 4.40
1039 1059 1.006220 CGGCACACACTCTACTGCA 60.006 57.895 0.00 0.00 0.00 4.41
1040 1060 1.010935 CGGCACACACTCTACTGCAG 61.011 60.000 13.48 13.48 0.00 4.41
1071 1091 3.426859 CCGCGAGCATCTATCTACTTTTG 59.573 47.826 8.23 0.00 0.00 2.44
1090 1110 1.272092 TGGGAAGGCATTTCTGTCCTG 60.272 52.381 0.00 0.00 36.03 3.86
1095 1115 2.551270 AGGCATTTCTGTCCTGGAGTA 58.449 47.619 0.00 0.00 30.67 2.59
1120 1140 1.310216 GGTGACCAAATACGGTGGCC 61.310 60.000 0.00 0.00 40.22 5.36
1145 1165 2.046314 CGCGGGGGATTGTGAAGT 60.046 61.111 0.00 0.00 0.00 3.01
1188 1208 1.856265 GCAAAGGGAGGAAGTGCGTG 61.856 60.000 0.00 0.00 0.00 5.34
1263 1283 2.978010 GTGTTCGTGGGGTGGCTG 60.978 66.667 0.00 0.00 0.00 4.85
1351 1371 0.320946 CGGCTTCGGGAAACAAGGTA 60.321 55.000 0.00 0.00 0.00 3.08
1352 1372 1.450025 GGCTTCGGGAAACAAGGTAG 58.550 55.000 0.00 0.00 0.00 3.18
1362 1383 5.622180 GGGAAACAAGGTAGTCTTTCTTCT 58.378 41.667 0.00 0.00 32.41 2.85
1407 1433 3.062042 GTTGTCGGTTTTCACGAGGTAT 58.938 45.455 0.00 0.00 41.50 2.73
1488 1514 0.532862 CGTGTTCCCAGTGCTGTTCT 60.533 55.000 0.00 0.00 0.00 3.01
1492 1518 2.024414 GTTCCCAGTGCTGTTCTTGTT 58.976 47.619 0.00 0.00 0.00 2.83
1511 1537 0.582482 TCGTTGTTGCGTGCGTTTAT 59.418 45.000 0.00 0.00 0.00 1.40
1604 1630 2.485426 TCCGACCACGAAGTTGTACTAG 59.515 50.000 0.00 0.00 41.61 2.57
1609 1635 3.319972 ACCACGAAGTTGTACTAGAGCAA 59.680 43.478 0.00 0.00 41.61 3.91
1624 1650 7.715265 ACTAGAGCAACGTCAATTAATATGG 57.285 36.000 0.00 0.00 0.00 2.74
1631 1657 6.146510 GCAACGTCAATTAATATGGATCGGTA 59.853 38.462 0.00 0.00 0.00 4.02
1645 1671 9.868160 ATATGGATCGGTATAGTATCTCATCAA 57.132 33.333 0.00 0.00 0.00 2.57
1646 1672 7.631717 TGGATCGGTATAGTATCTCATCAAG 57.368 40.000 0.00 0.00 0.00 3.02
1647 1673 7.175797 TGGATCGGTATAGTATCTCATCAAGT 58.824 38.462 0.00 0.00 0.00 3.16
1753 1785 0.179936 AGAATAGCAGCAGCCTGGAC 59.820 55.000 0.00 0.00 43.56 4.02
1814 1846 1.873591 GGCATAGAACTGGCCGTATTG 59.126 52.381 0.00 0.00 38.04 1.90
1829 1861 2.615447 CGTATTGCTCATGTTCATGGCT 59.385 45.455 18.91 8.95 0.00 4.75
1878 1910 1.009389 CACCGTCGAGTTCTCCAAGC 61.009 60.000 0.00 0.00 0.00 4.01
1879 1911 1.179814 ACCGTCGAGTTCTCCAAGCT 61.180 55.000 0.00 0.00 0.00 3.74
1880 1912 0.809385 CCGTCGAGTTCTCCAAGCTA 59.191 55.000 0.00 0.00 0.00 3.32
1899 1931 4.752879 TACGCGTCAAGCCAGGCC 62.753 66.667 18.63 0.00 44.76 5.19
1923 1955 0.756903 ACTGTAAGGAACCACACGCT 59.243 50.000 0.00 0.00 39.30 5.07
1962 1998 7.222611 ACACAAAATTGTTACTGCAATTCTGAC 59.777 33.333 10.57 0.00 45.17 3.51
1994 2035 2.707039 GTGCAAACTGACGTGCGT 59.293 55.556 0.00 0.00 43.93 5.24
1995 2036 1.651132 GTGCAAACTGACGTGCGTG 60.651 57.895 0.67 0.00 43.93 5.34
1996 2037 2.722188 GCAAACTGACGTGCGTGC 60.722 61.111 0.67 0.00 0.00 5.34
1997 2038 2.423517 CAAACTGACGTGCGTGCG 60.424 61.111 0.67 0.00 37.94 5.34
1999 2040 3.150410 AAACTGACGTGCGTGCGTG 62.150 57.895 10.76 1.37 45.79 5.34
2151 2192 4.477975 CTCGTCGGCCTCACGTCC 62.478 72.222 20.04 0.00 38.45 4.79
2244 2285 2.270352 ACGTCTTTTTCTGGGCATCA 57.730 45.000 0.00 0.00 0.00 3.07
2269 2310 3.052566 TGATCAGATCCACCTGGTACTCT 60.053 47.826 8.00 0.00 34.99 3.24
2284 2325 1.356124 ACTCTCCTCAGGTGCACAAT 58.644 50.000 20.43 3.17 0.00 2.71
2302 2343 6.128090 TGCACAATCATCTTCAAGATTCAGAC 60.128 38.462 0.00 0.00 31.32 3.51
2533 2579 3.118454 CACATGGGCGTCACCGTC 61.118 66.667 0.00 0.00 40.62 4.79
2673 2719 0.385974 CTCAACTTCGCCAAAAGCCG 60.386 55.000 0.00 0.00 38.78 5.52
2721 2767 0.037975 GAGGGTTACGAGGCAACGAA 60.038 55.000 10.66 0.00 46.39 3.85
2727 2773 2.740447 GTTACGAGGCAACGAAAGGAAT 59.260 45.455 10.66 0.00 46.39 3.01
2728 2774 1.156736 ACGAGGCAACGAAAGGAATG 58.843 50.000 10.66 0.00 46.39 2.67
2729 2775 1.156736 CGAGGCAACGAAAGGAATGT 58.843 50.000 0.00 0.00 46.39 2.71
2730 2776 2.289195 ACGAGGCAACGAAAGGAATGTA 60.289 45.455 10.66 0.00 46.39 2.29
2731 2777 2.739913 CGAGGCAACGAAAGGAATGTAA 59.260 45.455 0.00 0.00 46.39 2.41
3215 3264 2.124996 AGCCCCAGCCTTGACCTA 59.875 61.111 0.00 0.00 41.25 3.08
3229 3278 1.152819 ACCTACGCATCGAGGCCTA 60.153 57.895 17.46 8.54 36.17 3.93
3233 3282 0.532640 TACGCATCGAGGCCTACGTA 60.533 55.000 17.46 12.56 35.15 3.57
3758 3807 3.328382 AAGCTCTACGGTGCACATTTA 57.672 42.857 20.43 5.18 34.76 1.40
3784 3835 4.217754 TCAGACGTACATTTGGTTTTGC 57.782 40.909 0.00 0.00 0.00 3.68
3857 3909 1.519455 GCTGGGGATTCACGACGAG 60.519 63.158 0.00 0.00 0.00 4.18
4025 4077 4.022413 AGAGGCTTTGGTTCTACTTTCC 57.978 45.455 0.00 0.00 0.00 3.13
4046 4195 3.374988 CCAGTTCGTACATCACCGTAGTA 59.625 47.826 0.00 0.00 0.00 1.82
4057 4206 5.184479 ACATCACCGTAGTATGTTGTGTAGT 59.816 40.000 0.00 0.00 29.68 2.73
4058 4207 5.050644 TCACCGTAGTATGTTGTGTAGTG 57.949 43.478 0.00 0.00 0.00 2.74
4086 4336 4.674475 TCTGTTTTCTTTTTGCGGGTAAC 58.326 39.130 0.00 0.00 0.00 2.50
4132 4382 8.311836 TCTCGTTTCTAAGACTATCACCATTTT 58.688 33.333 0.00 0.00 0.00 1.82
4140 4390 7.856145 AAGACTATCACCATTTTTCTAGCTG 57.144 36.000 0.00 0.00 0.00 4.24
4173 4423 7.094377 TGCTTTCACCCTGCTTTAAGTTAATAG 60.094 37.037 0.00 0.00 0.00 1.73
4194 4446 5.169836 AGGAAACAAACGATTGAACTGAC 57.830 39.130 12.79 0.00 38.94 3.51
4198 4450 4.536364 ACAAACGATTGAACTGACACAG 57.464 40.909 12.79 0.00 38.94 3.66
4201 4453 2.755650 ACGATTGAACTGACACAGGAC 58.244 47.619 0.00 0.00 35.51 3.85
4224 4476 6.424683 ACGACGAAGAAATCCTTTTACAAAC 58.575 36.000 0.00 0.00 34.68 2.93
4230 4482 9.463443 CGAAGAAATCCTTTTACAAACTTGATT 57.537 29.630 0.00 0.00 34.68 2.57
4285 4537 1.106944 GGGGTGGTGGAAGTTGTGTG 61.107 60.000 0.00 0.00 0.00 3.82
4579 4874 4.689062 GGATCCATGGATTCCCTCTAGTA 58.311 47.826 27.93 0.00 34.60 1.82
4626 4921 2.553685 GGGTCAAACGGTCCTAACCAAT 60.554 50.000 0.00 0.00 46.86 3.16
4669 4965 2.706190 GCTAATGGTACTGGGATGAGGT 59.294 50.000 0.00 0.00 0.00 3.85
4809 5113 9.082313 TCTCAGTAAAGAGTGCATATCATATGA 57.918 33.333 9.00 8.10 36.97 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.922931 TTGCATAAGCTCCAATATCAAATAGA 57.077 30.769 0.00 0.00 42.74 1.98
1 2 9.622004 CTTTGCATAAGCTCCAATATCAAATAG 57.378 33.333 0.00 0.00 42.74 1.73
2 3 9.353431 TCTTTGCATAAGCTCCAATATCAAATA 57.647 29.630 0.00 0.00 42.74 1.40
3 4 8.241497 TCTTTGCATAAGCTCCAATATCAAAT 57.759 30.769 0.00 0.00 42.74 2.32
4 5 7.643569 TCTTTGCATAAGCTCCAATATCAAA 57.356 32.000 0.00 0.00 42.74 2.69
5 6 7.828508 ATCTTTGCATAAGCTCCAATATCAA 57.171 32.000 0.00 0.00 42.74 2.57
6 7 7.286087 ACAATCTTTGCATAAGCTCCAATATCA 59.714 33.333 0.00 0.00 42.74 2.15
7 8 7.655490 ACAATCTTTGCATAAGCTCCAATATC 58.345 34.615 0.00 0.00 42.74 1.63
8 9 7.592885 ACAATCTTTGCATAAGCTCCAATAT 57.407 32.000 0.00 0.00 42.74 1.28
9 10 7.259882 CAACAATCTTTGCATAAGCTCCAATA 58.740 34.615 0.00 0.00 42.74 1.90
10 11 5.927281 ACAATCTTTGCATAAGCTCCAAT 57.073 34.783 0.00 0.00 42.74 3.16
11 12 5.472148 CAACAATCTTTGCATAAGCTCCAA 58.528 37.500 0.00 0.00 42.74 3.53
12 13 4.082081 CCAACAATCTTTGCATAAGCTCCA 60.082 41.667 0.00 0.00 42.74 3.86
13 14 4.082026 ACCAACAATCTTTGCATAAGCTCC 60.082 41.667 0.00 0.00 42.74 4.70
14 15 5.064441 ACCAACAATCTTTGCATAAGCTC 57.936 39.130 0.00 0.00 42.74 4.09
15 16 5.473066 AACCAACAATCTTTGCATAAGCT 57.527 34.783 0.00 0.00 42.74 3.74
16 17 7.761249 AGATTAACCAACAATCTTTGCATAAGC 59.239 33.333 0.00 0.00 39.20 3.09
19 20 9.237187 TGTAGATTAACCAACAATCTTTGCATA 57.763 29.630 3.16 0.00 41.72 3.14
20 21 8.121305 TGTAGATTAACCAACAATCTTTGCAT 57.879 30.769 3.16 0.00 41.72 3.96
21 22 7.517614 TGTAGATTAACCAACAATCTTTGCA 57.482 32.000 3.16 0.00 41.72 4.08
22 23 9.503427 GTATGTAGATTAACCAACAATCTTTGC 57.497 33.333 3.16 0.00 41.72 3.68
26 27 9.959721 AGTTGTATGTAGATTAACCAACAATCT 57.040 29.630 0.00 3.35 43.46 2.40
30 31 9.562408 TCAAAGTTGTATGTAGATTAACCAACA 57.438 29.630 0.00 0.00 0.00 3.33
39 40 9.593134 GTGAAGAGATCAAAGTTGTATGTAGAT 57.407 33.333 0.00 0.00 40.50 1.98
40 41 8.585018 TGTGAAGAGATCAAAGTTGTATGTAGA 58.415 33.333 0.00 0.00 40.50 2.59
41 42 8.763049 TGTGAAGAGATCAAAGTTGTATGTAG 57.237 34.615 0.00 0.00 40.50 2.74
42 43 9.725019 AATGTGAAGAGATCAAAGTTGTATGTA 57.275 29.630 0.00 0.00 40.50 2.29
43 44 8.627208 AATGTGAAGAGATCAAAGTTGTATGT 57.373 30.769 0.00 0.00 40.50 2.29
53 54 8.623903 GGCATGTAATAAATGTGAAGAGATCAA 58.376 33.333 0.00 0.00 40.50 2.57
54 55 7.774625 TGGCATGTAATAAATGTGAAGAGATCA 59.225 33.333 0.00 0.00 35.05 2.92
55 56 8.072567 GTGGCATGTAATAAATGTGAAGAGATC 58.927 37.037 0.00 0.00 0.00 2.75
56 57 7.557358 TGTGGCATGTAATAAATGTGAAGAGAT 59.443 33.333 0.00 0.00 0.00 2.75
57 58 6.883756 TGTGGCATGTAATAAATGTGAAGAGA 59.116 34.615 0.00 0.00 0.00 3.10
58 59 7.087409 TGTGGCATGTAATAAATGTGAAGAG 57.913 36.000 0.00 0.00 0.00 2.85
59 60 7.643569 ATGTGGCATGTAATAAATGTGAAGA 57.356 32.000 0.00 0.00 0.00 2.87
60 61 9.970395 ATAATGTGGCATGTAATAAATGTGAAG 57.030 29.630 0.00 0.00 0.00 3.02
61 62 9.964303 GATAATGTGGCATGTAATAAATGTGAA 57.036 29.630 0.00 0.00 0.00 3.18
62 63 9.129532 TGATAATGTGGCATGTAATAAATGTGA 57.870 29.630 0.00 0.00 0.00 3.58
63 64 9.184062 GTGATAATGTGGCATGTAATAAATGTG 57.816 33.333 0.00 0.00 0.00 3.21
64 65 9.135189 AGTGATAATGTGGCATGTAATAAATGT 57.865 29.630 0.00 0.00 0.00 2.71
68 69 9.791801 ACATAGTGATAATGTGGCATGTAATAA 57.208 29.630 0.00 0.00 36.24 1.40
69 70 9.435688 GACATAGTGATAATGTGGCATGTAATA 57.564 33.333 0.00 0.00 37.69 0.98
70 71 8.159447 AGACATAGTGATAATGTGGCATGTAAT 58.841 33.333 0.00 0.00 37.69 1.89
71 72 7.508687 AGACATAGTGATAATGTGGCATGTAA 58.491 34.615 0.00 0.00 37.69 2.41
72 73 7.066307 AGACATAGTGATAATGTGGCATGTA 57.934 36.000 0.00 0.00 37.69 2.29
73 74 5.933617 AGACATAGTGATAATGTGGCATGT 58.066 37.500 0.00 0.00 37.69 3.21
74 75 6.872628 AAGACATAGTGATAATGTGGCATG 57.127 37.500 0.00 0.00 37.69 4.06
75 76 7.164122 CCTAAGACATAGTGATAATGTGGCAT 58.836 38.462 0.00 0.00 37.69 4.40
76 77 6.099701 ACCTAAGACATAGTGATAATGTGGCA 59.900 38.462 0.00 0.00 37.69 4.92
77 78 6.425114 CACCTAAGACATAGTGATAATGTGGC 59.575 42.308 0.00 0.00 37.69 5.01
78 79 7.653713 GTCACCTAAGACATAGTGATAATGTGG 59.346 40.741 0.00 0.00 37.69 4.17
79 80 8.197439 TGTCACCTAAGACATAGTGATAATGTG 58.803 37.037 0.00 0.00 43.18 3.21
80 81 8.306313 TGTCACCTAAGACATAGTGATAATGT 57.694 34.615 0.00 0.00 43.18 2.71
81 82 9.599866 TTTGTCACCTAAGACATAGTGATAATG 57.400 33.333 0.00 0.00 46.90 1.90
91 92 9.295825 TGTTGATAAATTTGTCACCTAAGACAT 57.704 29.630 16.24 0.00 46.90 3.06
92 93 8.564574 GTGTTGATAAATTTGTCACCTAAGACA 58.435 33.333 16.24 13.55 46.12 3.41
93 94 7.744715 CGTGTTGATAAATTTGTCACCTAAGAC 59.255 37.037 16.24 11.42 38.99 3.01
94 95 7.442969 ACGTGTTGATAAATTTGTCACCTAAGA 59.557 33.333 16.24 0.00 0.00 2.10
95 96 7.581476 ACGTGTTGATAAATTTGTCACCTAAG 58.419 34.615 16.24 10.47 0.00 2.18
96 97 7.499321 ACGTGTTGATAAATTTGTCACCTAA 57.501 32.000 16.24 0.48 0.00 2.69
97 98 8.780846 ATACGTGTTGATAAATTTGTCACCTA 57.219 30.769 16.24 0.83 0.00 3.08
98 99 7.606456 AGATACGTGTTGATAAATTTGTCACCT 59.394 33.333 16.24 0.00 0.00 4.00
99 100 7.748847 AGATACGTGTTGATAAATTTGTCACC 58.251 34.615 16.24 10.83 0.00 4.02
116 117 9.586150 GCATCTTCAATAATTGTAAGATACGTG 57.414 33.333 0.00 3.43 36.40 4.49
117 118 9.547753 AGCATCTTCAATAATTGTAAGATACGT 57.452 29.630 0.00 0.00 36.40 3.57
134 135 5.806129 GCCAGCTGGTAAGAGCATCTTCA 62.806 52.174 32.81 0.00 45.10 3.02
135 136 3.319951 GCCAGCTGGTAAGAGCATCTTC 61.320 54.545 32.81 8.48 45.10 2.87
136 137 1.407989 GCCAGCTGGTAAGAGCATCTT 60.408 52.381 32.81 0.00 46.96 2.40
137 138 0.179936 GCCAGCTGGTAAGAGCATCT 59.820 55.000 32.81 0.00 42.97 2.90
138 139 0.817229 GGCCAGCTGGTAAGAGCATC 60.817 60.000 32.81 13.25 41.83 3.91
139 140 1.225704 GGCCAGCTGGTAAGAGCAT 59.774 57.895 32.81 0.00 41.83 3.79
140 141 2.671070 GGCCAGCTGGTAAGAGCA 59.329 61.111 32.81 0.00 41.83 4.26
141 142 2.512515 CGGCCAGCTGGTAAGAGC 60.513 66.667 32.81 17.47 39.46 4.09
142 143 2.512515 GCGGCCAGCTGGTAAGAG 60.513 66.667 32.81 19.71 44.04 2.85
170 171 4.899239 GAGCACGGCCGCAGCTAT 62.899 66.667 36.13 21.67 39.02 2.97
263 264 2.444624 GCGTGACATGACGATGCGT 61.445 57.895 10.81 0.00 45.10 5.24
264 265 2.317689 GCGTGACATGACGATGCG 59.682 61.111 10.81 4.46 42.10 4.73
265 266 2.703409 GGCGTGACATGACGATGC 59.297 61.111 10.81 7.08 42.10 3.91
266 267 2.997869 CGGCGTGACATGACGATG 59.002 61.111 18.32 0.00 38.01 3.84
267 268 2.885644 GCGGCGTGACATGACGAT 60.886 61.111 26.87 0.00 38.01 3.73
268 269 4.350441 TGCGGCGTGACATGACGA 62.350 61.111 26.87 8.89 38.01 4.20
269 270 4.134187 GTGCGGCGTGACATGACG 62.134 66.667 18.81 18.81 39.01 4.35
270 271 2.730672 GAGTGCGGCGTGACATGAC 61.731 63.158 9.37 0.00 0.00 3.06
271 272 2.432456 GAGTGCGGCGTGACATGA 60.432 61.111 9.37 0.00 0.00 3.07
272 273 3.842126 CGAGTGCGGCGTGACATG 61.842 66.667 9.37 0.00 0.00 3.21
309 310 3.744719 TCGAGCTCGAACCCCACG 61.745 66.667 35.16 7.91 46.30 4.94
332 333 3.838271 TAGGAGCAAGGCGAGGCG 61.838 66.667 0.00 0.00 34.54 5.52
333 334 2.202946 GTAGGAGCAAGGCGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
334 335 2.105128 CGTAGGAGCAAGGCGAGG 59.895 66.667 0.00 0.00 0.00 4.63
335 336 2.583593 GCGTAGGAGCAAGGCGAG 60.584 66.667 0.00 0.00 37.05 5.03
336 337 4.143333 GGCGTAGGAGCAAGGCGA 62.143 66.667 0.00 0.00 39.27 5.54
338 339 4.096003 TGGGCGTAGGAGCAAGGC 62.096 66.667 0.00 0.00 39.27 4.35
339 340 2.125106 GTGGGCGTAGGAGCAAGG 60.125 66.667 0.00 0.00 39.27 3.61
340 341 2.509336 CGTGGGCGTAGGAGCAAG 60.509 66.667 0.00 0.00 39.27 4.01
353 354 4.657824 AGCACCGACCGAACGTGG 62.658 66.667 0.00 0.00 0.00 4.94
354 355 3.103911 GAGCACCGACCGAACGTG 61.104 66.667 0.00 0.00 0.00 4.49
355 356 4.353437 GGAGCACCGACCGAACGT 62.353 66.667 0.00 0.00 0.00 3.99
356 357 4.052229 AGGAGCACCGACCGAACG 62.052 66.667 0.00 0.00 41.83 3.95
357 358 2.432628 CAGGAGCACCGACCGAAC 60.433 66.667 0.00 0.00 41.83 3.95
358 359 4.373116 GCAGGAGCACCGACCGAA 62.373 66.667 0.00 0.00 41.58 4.30
368 369 3.426568 GCCAACGTCTGCAGGAGC 61.427 66.667 15.13 4.42 42.57 4.70
369 370 2.743928 GGCCAACGTCTGCAGGAG 60.744 66.667 15.13 10.77 0.00 3.69
370 371 3.240134 GAGGCCAACGTCTGCAGGA 62.240 63.158 15.13 0.00 0.00 3.86
371 372 2.743928 GAGGCCAACGTCTGCAGG 60.744 66.667 15.13 0.36 0.00 4.85
372 373 3.114616 CGAGGCCAACGTCTGCAG 61.115 66.667 7.63 7.63 0.00 4.41
386 387 2.829003 TAGGTGCGGAGAGGCGAG 60.829 66.667 0.00 0.00 35.06 5.03
387 388 2.829003 CTAGGTGCGGAGAGGCGA 60.829 66.667 0.00 0.00 35.06 5.54
388 389 4.577246 GCTAGGTGCGGAGAGGCG 62.577 72.222 0.00 0.00 35.06 5.52
389 390 4.228567 GGCTAGGTGCGGAGAGGC 62.229 72.222 0.00 0.00 44.05 4.70
390 391 3.905678 CGGCTAGGTGCGGAGAGG 61.906 72.222 0.00 0.00 43.58 3.69
391 392 4.577246 GCGGCTAGGTGCGGAGAG 62.577 72.222 0.00 0.00 43.58 3.20
393 394 4.880537 CAGCGGCTAGGTGCGGAG 62.881 72.222 0.26 0.00 43.58 4.63
412 413 2.765807 TAGCAGGCAGGGGAGCTC 60.766 66.667 4.71 4.71 38.47 4.09
413 414 3.086600 GTAGCAGGCAGGGGAGCT 61.087 66.667 0.00 0.00 40.92 4.09
414 415 2.750657 ATGTAGCAGGCAGGGGAGC 61.751 63.158 0.00 0.00 0.00 4.70
415 416 1.147824 CATGTAGCAGGCAGGGGAG 59.852 63.158 0.00 0.00 0.00 4.30
416 417 1.207488 AACATGTAGCAGGCAGGGGA 61.207 55.000 0.00 0.00 0.00 4.81
417 418 0.323725 AAACATGTAGCAGGCAGGGG 60.324 55.000 0.00 0.00 0.00 4.79
418 419 0.813184 CAAACATGTAGCAGGCAGGG 59.187 55.000 0.00 0.00 0.00 4.45
419 420 1.825090 TCAAACATGTAGCAGGCAGG 58.175 50.000 0.00 0.00 0.00 4.85
420 421 5.565592 TTTATCAAACATGTAGCAGGCAG 57.434 39.130 0.00 0.00 0.00 4.85
421 422 5.973899 TTTTATCAAACATGTAGCAGGCA 57.026 34.783 0.00 0.00 0.00 4.75
422 423 5.232838 GCATTTTATCAAACATGTAGCAGGC 59.767 40.000 0.00 0.00 0.00 4.85
423 424 6.567050 AGCATTTTATCAAACATGTAGCAGG 58.433 36.000 0.00 0.00 0.00 4.85
424 425 8.615211 TCTAGCATTTTATCAAACATGTAGCAG 58.385 33.333 0.00 0.00 0.00 4.24
425 426 8.504812 TCTAGCATTTTATCAAACATGTAGCA 57.495 30.769 0.00 0.00 0.00 3.49
426 427 9.226345 GTTCTAGCATTTTATCAAACATGTAGC 57.774 33.333 0.00 0.00 0.00 3.58
427 428 9.425893 CGTTCTAGCATTTTATCAAACATGTAG 57.574 33.333 0.00 0.00 0.00 2.74
428 429 8.394877 CCGTTCTAGCATTTTATCAAACATGTA 58.605 33.333 0.00 0.00 0.00 2.29
429 430 7.120579 TCCGTTCTAGCATTTTATCAAACATGT 59.879 33.333 0.00 0.00 0.00 3.21
430 431 7.429340 GTCCGTTCTAGCATTTTATCAAACATG 59.571 37.037 0.00 0.00 0.00 3.21
431 432 7.120579 TGTCCGTTCTAGCATTTTATCAAACAT 59.879 33.333 0.00 0.00 0.00 2.71
432 433 6.428465 TGTCCGTTCTAGCATTTTATCAAACA 59.572 34.615 0.00 0.00 0.00 2.83
433 434 6.837992 TGTCCGTTCTAGCATTTTATCAAAC 58.162 36.000 0.00 0.00 0.00 2.93
434 435 7.120579 ACATGTCCGTTCTAGCATTTTATCAAA 59.879 33.333 0.00 0.00 0.00 2.69
435 436 6.597672 ACATGTCCGTTCTAGCATTTTATCAA 59.402 34.615 0.00 0.00 0.00 2.57
436 437 6.112734 ACATGTCCGTTCTAGCATTTTATCA 58.887 36.000 0.00 0.00 0.00 2.15
437 438 6.257849 TGACATGTCCGTTCTAGCATTTTATC 59.742 38.462 22.85 0.00 0.00 1.75
438 439 6.112734 TGACATGTCCGTTCTAGCATTTTAT 58.887 36.000 22.85 0.00 0.00 1.40
439 440 5.483811 TGACATGTCCGTTCTAGCATTTTA 58.516 37.500 22.85 0.00 0.00 1.52
440 441 4.323417 TGACATGTCCGTTCTAGCATTTT 58.677 39.130 22.85 0.00 0.00 1.82
441 442 3.937814 TGACATGTCCGTTCTAGCATTT 58.062 40.909 22.85 0.00 0.00 2.32
442 443 3.610040 TGACATGTCCGTTCTAGCATT 57.390 42.857 22.85 0.00 0.00 3.56
443 444 3.610040 TTGACATGTCCGTTCTAGCAT 57.390 42.857 22.85 0.00 0.00 3.79
444 445 3.394674 TTTGACATGTCCGTTCTAGCA 57.605 42.857 22.85 0.00 0.00 3.49
445 446 4.437390 CCATTTTGACATGTCCGTTCTAGC 60.437 45.833 22.85 0.00 0.00 3.42
446 447 4.094887 CCCATTTTGACATGTCCGTTCTAG 59.905 45.833 22.85 6.59 0.00 2.43
447 448 4.006989 CCCATTTTGACATGTCCGTTCTA 58.993 43.478 22.85 0.00 0.00 2.10
448 449 2.819608 CCCATTTTGACATGTCCGTTCT 59.180 45.455 22.85 1.55 0.00 3.01
449 450 2.556622 ACCCATTTTGACATGTCCGTTC 59.443 45.455 22.85 0.00 0.00 3.95
450 451 2.593026 ACCCATTTTGACATGTCCGTT 58.407 42.857 22.85 2.80 0.00 4.44
451 452 2.286365 ACCCATTTTGACATGTCCGT 57.714 45.000 22.85 3.65 0.00 4.69
452 453 3.658757 AAACCCATTTTGACATGTCCG 57.341 42.857 22.85 6.39 0.00 4.79
453 454 6.096673 AGTTAAACCCATTTTGACATGTCC 57.903 37.500 22.85 5.91 36.39 4.02
454 455 7.088272 GGTAGTTAAACCCATTTTGACATGTC 58.912 38.462 19.27 19.27 36.39 3.06
455 456 6.294286 CGGTAGTTAAACCCATTTTGACATGT 60.294 38.462 0.00 0.00 36.39 3.21
456 457 6.090129 CGGTAGTTAAACCCATTTTGACATG 58.910 40.000 0.00 0.00 36.39 3.21
457 458 5.771165 ACGGTAGTTAAACCCATTTTGACAT 59.229 36.000 0.00 0.00 36.39 3.06
458 459 5.131784 ACGGTAGTTAAACCCATTTTGACA 58.868 37.500 0.00 0.00 36.39 3.58
459 460 5.694231 ACGGTAGTTAAACCCATTTTGAC 57.306 39.130 0.00 0.00 36.03 3.18
460 461 5.009811 CCAACGGTAGTTAAACCCATTTTGA 59.990 40.000 0.00 0.00 38.79 2.69
461 462 5.224135 CCAACGGTAGTTAAACCCATTTTG 58.776 41.667 0.00 0.00 38.79 2.44
462 463 4.281435 CCCAACGGTAGTTAAACCCATTTT 59.719 41.667 0.00 0.00 38.79 1.82
463 464 3.827876 CCCAACGGTAGTTAAACCCATTT 59.172 43.478 0.00 0.00 38.79 2.32
464 465 3.423749 CCCAACGGTAGTTAAACCCATT 58.576 45.455 0.00 0.00 38.79 3.16
465 466 2.880990 GCCCAACGGTAGTTAAACCCAT 60.881 50.000 0.00 0.00 38.79 4.00
466 467 1.545204 GCCCAACGGTAGTTAAACCCA 60.545 52.381 0.00 0.00 38.79 4.51
467 468 1.167851 GCCCAACGGTAGTTAAACCC 58.832 55.000 0.00 0.00 38.79 4.11
468 469 1.536766 GTGCCCAACGGTAGTTAAACC 59.463 52.381 0.00 0.00 38.79 3.27
469 470 2.031769 GTGTGCCCAACGGTAGTTAAAC 60.032 50.000 0.00 0.00 38.79 2.01
470 471 2.220313 GTGTGCCCAACGGTAGTTAAA 58.780 47.619 0.00 0.00 38.79 1.52
471 472 1.873069 CGTGTGCCCAACGGTAGTTAA 60.873 52.381 0.00 0.00 38.79 2.01
472 473 0.319727 CGTGTGCCCAACGGTAGTTA 60.320 55.000 0.00 0.00 38.79 2.24
473 474 1.595929 CGTGTGCCCAACGGTAGTT 60.596 57.895 0.00 0.00 42.15 2.24
474 475 2.029964 CGTGTGCCCAACGGTAGT 59.970 61.111 0.00 0.00 37.39 2.73
479 480 0.875728 TTTTATCCGTGTGCCCAACG 59.124 50.000 0.00 0.00 40.70 4.10
480 481 1.402325 GCTTTTATCCGTGTGCCCAAC 60.402 52.381 0.00 0.00 0.00 3.77
481 482 0.885196 GCTTTTATCCGTGTGCCCAA 59.115 50.000 0.00 0.00 0.00 4.12
482 483 1.302383 CGCTTTTATCCGTGTGCCCA 61.302 55.000 0.00 0.00 0.00 5.36
483 484 1.427819 CGCTTTTATCCGTGTGCCC 59.572 57.895 0.00 0.00 0.00 5.36
484 485 1.022451 TCCGCTTTTATCCGTGTGCC 61.022 55.000 0.00 0.00 0.00 5.01
485 486 0.096454 GTCCGCTTTTATCCGTGTGC 59.904 55.000 0.00 0.00 0.00 4.57
486 487 1.434555 TGTCCGCTTTTATCCGTGTG 58.565 50.000 0.00 0.00 0.00 3.82
487 488 2.172851 TTGTCCGCTTTTATCCGTGT 57.827 45.000 0.00 0.00 0.00 4.49
488 489 2.224549 TGTTTGTCCGCTTTTATCCGTG 59.775 45.455 0.00 0.00 0.00 4.94
489 490 2.224784 GTGTTTGTCCGCTTTTATCCGT 59.775 45.455 0.00 0.00 0.00 4.69
490 491 2.723618 CGTGTTTGTCCGCTTTTATCCG 60.724 50.000 0.00 0.00 0.00 4.18
491 492 2.224784 ACGTGTTTGTCCGCTTTTATCC 59.775 45.455 0.00 0.00 0.00 2.59
492 493 3.476181 GACGTGTTTGTCCGCTTTTATC 58.524 45.455 0.00 0.00 32.61 1.75
493 494 3.531262 GACGTGTTTGTCCGCTTTTAT 57.469 42.857 0.00 0.00 32.61 1.40
495 496 3.909957 GACGTGTTTGTCCGCTTTT 57.090 47.368 0.00 0.00 32.61 2.27
502 503 4.696172 CGCGCGGACGTGTTTGTC 62.696 66.667 24.84 0.00 44.66 3.18
513 514 3.427425 TTTGGATTGACCGCGCGG 61.427 61.111 44.88 44.88 42.61 6.46
514 515 2.202298 GTTTGGATTGACCGCGCG 60.202 61.111 25.67 25.67 42.61 6.86
515 516 2.202298 CGTTTGGATTGACCGCGC 60.202 61.111 0.00 0.00 42.61 6.86
516 517 2.030401 TCCGTTTGGATTGACCGCG 61.030 57.895 0.00 0.00 40.17 6.46
517 518 3.975246 TCCGTTTGGATTGACCGC 58.025 55.556 0.00 0.00 40.17 5.68
525 526 2.352342 GTCTGTTTTTCGTCCGTTTGGA 59.648 45.455 0.00 0.00 43.88 3.53
526 527 2.096174 TGTCTGTTTTTCGTCCGTTTGG 59.904 45.455 0.00 0.00 0.00 3.28
527 528 3.392769 TGTCTGTTTTTCGTCCGTTTG 57.607 42.857 0.00 0.00 0.00 2.93
528 529 4.422546 TTTGTCTGTTTTTCGTCCGTTT 57.577 36.364 0.00 0.00 0.00 3.60
529 530 4.160594 GTTTTGTCTGTTTTTCGTCCGTT 58.839 39.130 0.00 0.00 0.00 4.44
530 531 3.426560 GGTTTTGTCTGTTTTTCGTCCGT 60.427 43.478 0.00 0.00 0.00 4.69
531 532 3.103007 GGTTTTGTCTGTTTTTCGTCCG 58.897 45.455 0.00 0.00 0.00 4.79
532 533 3.103007 CGGTTTTGTCTGTTTTTCGTCC 58.897 45.455 0.00 0.00 0.00 4.79
533 534 2.528688 GCGGTTTTGTCTGTTTTTCGTC 59.471 45.455 0.00 0.00 0.00 4.20
534 535 2.521996 GCGGTTTTGTCTGTTTTTCGT 58.478 42.857 0.00 0.00 0.00 3.85
535 536 1.511147 CGCGGTTTTGTCTGTTTTTCG 59.489 47.619 0.00 0.00 0.00 3.46
536 537 2.521996 ACGCGGTTTTGTCTGTTTTTC 58.478 42.857 12.47 0.00 0.00 2.29
537 538 2.521996 GACGCGGTTTTGTCTGTTTTT 58.478 42.857 12.47 0.00 32.37 1.94
538 539 1.202211 GGACGCGGTTTTGTCTGTTTT 60.202 47.619 12.47 0.00 35.45 2.43
539 540 0.379316 GGACGCGGTTTTGTCTGTTT 59.621 50.000 12.47 0.00 35.45 2.83
540 541 1.441732 GGGACGCGGTTTTGTCTGTT 61.442 55.000 12.47 0.00 35.45 3.16
541 542 1.890510 GGGACGCGGTTTTGTCTGT 60.891 57.895 12.47 0.00 35.45 3.41
542 543 1.566018 GAGGGACGCGGTTTTGTCTG 61.566 60.000 12.47 0.00 35.45 3.51
543 544 1.301479 GAGGGACGCGGTTTTGTCT 60.301 57.895 12.47 0.00 35.45 3.41
544 545 1.301479 AGAGGGACGCGGTTTTGTC 60.301 57.895 12.47 0.00 0.00 3.18
545 546 1.597027 CAGAGGGACGCGGTTTTGT 60.597 57.895 12.47 0.00 0.00 2.83
546 547 0.882927 TTCAGAGGGACGCGGTTTTG 60.883 55.000 12.47 0.86 0.00 2.44
547 548 0.036306 ATTCAGAGGGACGCGGTTTT 59.964 50.000 12.47 0.00 0.00 2.43
548 549 0.391263 GATTCAGAGGGACGCGGTTT 60.391 55.000 12.47 0.00 0.00 3.27
549 550 1.218316 GATTCAGAGGGACGCGGTT 59.782 57.895 12.47 0.00 0.00 4.44
550 551 1.682684 AGATTCAGAGGGACGCGGT 60.683 57.895 12.47 0.00 0.00 5.68
551 552 1.227089 CAGATTCAGAGGGACGCGG 60.227 63.158 12.47 0.00 0.00 6.46
552 553 0.803768 CACAGATTCAGAGGGACGCG 60.804 60.000 3.53 3.53 0.00 6.01
553 554 1.086634 GCACAGATTCAGAGGGACGC 61.087 60.000 0.00 0.00 0.00 5.19
554 555 0.534412 AGCACAGATTCAGAGGGACG 59.466 55.000 0.00 0.00 0.00 4.79
555 556 2.746362 CAAAGCACAGATTCAGAGGGAC 59.254 50.000 0.00 0.00 0.00 4.46
556 557 2.290514 CCAAAGCACAGATTCAGAGGGA 60.291 50.000 0.00 0.00 0.00 4.20
557 558 2.089980 CCAAAGCACAGATTCAGAGGG 58.910 52.381 0.00 0.00 0.00 4.30
558 559 3.008330 CTCCAAAGCACAGATTCAGAGG 58.992 50.000 0.00 0.00 0.00 3.69
559 560 3.672808 ACTCCAAAGCACAGATTCAGAG 58.327 45.455 0.00 0.00 0.00 3.35
560 561 3.777106 ACTCCAAAGCACAGATTCAGA 57.223 42.857 0.00 0.00 0.00 3.27
561 562 3.567164 ACAACTCCAAAGCACAGATTCAG 59.433 43.478 0.00 0.00 0.00 3.02
562 563 3.554934 ACAACTCCAAAGCACAGATTCA 58.445 40.909 0.00 0.00 0.00 2.57
563 564 4.276926 AGAACAACTCCAAAGCACAGATTC 59.723 41.667 0.00 0.00 0.00 2.52
564 565 4.210331 AGAACAACTCCAAAGCACAGATT 58.790 39.130 0.00 0.00 0.00 2.40
565 566 3.825328 AGAACAACTCCAAAGCACAGAT 58.175 40.909 0.00 0.00 0.00 2.90
566 567 3.281727 AGAACAACTCCAAAGCACAGA 57.718 42.857 0.00 0.00 0.00 3.41
567 568 3.129287 ACAAGAACAACTCCAAAGCACAG 59.871 43.478 0.00 0.00 0.00 3.66
568 569 3.088532 ACAAGAACAACTCCAAAGCACA 58.911 40.909 0.00 0.00 0.00 4.57
569 570 3.782889 ACAAGAACAACTCCAAAGCAC 57.217 42.857 0.00 0.00 0.00 4.40
570 571 4.574828 GTCTACAAGAACAACTCCAAAGCA 59.425 41.667 0.00 0.00 0.00 3.91
571 572 4.318831 CGTCTACAAGAACAACTCCAAAGC 60.319 45.833 0.00 0.00 0.00 3.51
572 573 4.211374 CCGTCTACAAGAACAACTCCAAAG 59.789 45.833 0.00 0.00 0.00 2.77
573 574 4.124238 CCGTCTACAAGAACAACTCCAAA 58.876 43.478 0.00 0.00 0.00 3.28
574 575 3.724374 CCGTCTACAAGAACAACTCCAA 58.276 45.455 0.00 0.00 0.00 3.53
575 576 2.547218 GCCGTCTACAAGAACAACTCCA 60.547 50.000 0.00 0.00 0.00 3.86
576 577 2.067013 GCCGTCTACAAGAACAACTCC 58.933 52.381 0.00 0.00 0.00 3.85
577 578 2.067013 GGCCGTCTACAAGAACAACTC 58.933 52.381 0.00 0.00 0.00 3.01
578 579 1.414919 TGGCCGTCTACAAGAACAACT 59.585 47.619 0.00 0.00 0.00 3.16
579 580 1.529865 GTGGCCGTCTACAAGAACAAC 59.470 52.381 0.00 0.00 0.00 3.32
580 581 1.139256 TGTGGCCGTCTACAAGAACAA 59.861 47.619 0.00 0.00 0.00 2.83
581 582 0.753867 TGTGGCCGTCTACAAGAACA 59.246 50.000 0.00 0.00 0.00 3.18
582 583 1.145803 GTGTGGCCGTCTACAAGAAC 58.854 55.000 0.00 0.00 0.00 3.01
583 584 0.319211 CGTGTGGCCGTCTACAAGAA 60.319 55.000 0.00 0.00 0.00 2.52
584 585 1.287815 CGTGTGGCCGTCTACAAGA 59.712 57.895 0.00 0.00 0.00 3.02
585 586 2.380410 GCGTGTGGCCGTCTACAAG 61.380 63.158 0.00 0.00 34.80 3.16
586 587 2.356553 GCGTGTGGCCGTCTACAA 60.357 61.111 0.00 0.00 34.80 2.41
587 588 4.710695 CGCGTGTGGCCGTCTACA 62.711 66.667 0.00 0.00 38.94 2.74
588 589 4.712425 ACGCGTGTGGCCGTCTAC 62.712 66.667 12.93 0.00 38.94 2.59
618 619 1.142667 TCAACTTGGTGATGTCTGCCA 59.857 47.619 0.00 0.00 0.00 4.92
630 631 1.192146 TCTCCCCTCGGTCAACTTGG 61.192 60.000 0.00 0.00 0.00 3.61
646 647 3.213402 CGTCCCCTCTCGGCTCTC 61.213 72.222 0.00 0.00 0.00 3.20
652 653 3.450115 GTGTCCCGTCCCCTCTCG 61.450 72.222 0.00 0.00 0.00 4.04
745 756 3.407698 ACTGTCAACCATTTATCGTGCA 58.592 40.909 0.00 0.00 0.00 4.57
778 789 3.314080 ACGTATTGTAATCATTTGCGGGG 59.686 43.478 0.00 0.00 0.00 5.73
780 791 6.147164 AGGATACGTATTGTAATCATTTGCGG 59.853 38.462 9.92 0.00 46.39 5.69
796 808 4.457466 TGTGCATGTAGAGAGGATACGTA 58.543 43.478 0.00 0.00 46.39 3.57
797 809 3.288092 TGTGCATGTAGAGAGGATACGT 58.712 45.455 0.00 0.00 46.39 3.57
798 810 3.990318 TGTGCATGTAGAGAGGATACG 57.010 47.619 0.00 0.00 46.39 3.06
799 811 4.450419 GCAATGTGCATGTAGAGAGGATAC 59.550 45.833 0.00 0.00 44.26 2.24
856 872 5.104374 CCGTGCATTATTTTTGATTCAGCT 58.896 37.500 0.00 0.00 0.00 4.24
857 873 4.259930 GCCGTGCATTATTTTTGATTCAGC 60.260 41.667 0.00 0.00 0.00 4.26
858 874 4.027458 CGCCGTGCATTATTTTTGATTCAG 60.027 41.667 0.00 0.00 0.00 3.02
859 875 3.856521 CGCCGTGCATTATTTTTGATTCA 59.143 39.130 0.00 0.00 0.00 2.57
985 1005 1.558756 GCTCATCCATATGGGGGAGAG 59.441 57.143 31.25 25.64 37.96 3.20
992 1012 1.943046 GCTCGGTGCTCATCCATATGG 60.943 57.143 16.25 16.25 38.95 2.74
993 1013 1.270465 TGCTCGGTGCTCATCCATATG 60.270 52.381 3.53 0.00 43.37 1.78
994 1014 1.051008 TGCTCGGTGCTCATCCATAT 58.949 50.000 3.53 0.00 43.37 1.78
995 1015 0.104855 GTGCTCGGTGCTCATCCATA 59.895 55.000 3.53 0.00 43.37 2.74
996 1016 1.153289 GTGCTCGGTGCTCATCCAT 60.153 57.895 3.53 0.00 43.37 3.41
997 1017 2.265739 GTGCTCGGTGCTCATCCA 59.734 61.111 3.53 0.00 43.37 3.41
998 1018 2.512515 GGTGCTCGGTGCTCATCC 60.513 66.667 3.53 0.00 43.37 3.51
999 1019 2.887568 CGGTGCTCGGTGCTCATC 60.888 66.667 3.53 0.00 43.37 2.92
1000 1020 3.362399 CTCGGTGCTCGGTGCTCAT 62.362 63.158 3.53 0.00 43.37 2.90
1001 1021 4.056125 CTCGGTGCTCGGTGCTCA 62.056 66.667 3.53 0.00 43.37 4.26
1023 1043 1.294659 GGCTGCAGTAGAGTGTGTGC 61.295 60.000 16.64 0.00 36.42 4.57
1071 1091 1.467920 CAGGACAGAAATGCCTTCCC 58.532 55.000 0.00 0.00 34.21 3.97
1090 1110 1.580059 TTGGTCACCCCAGATACTCC 58.420 55.000 0.00 0.00 46.31 3.85
1095 1115 1.211949 CCGTATTTGGTCACCCCAGAT 59.788 52.381 0.00 0.00 46.31 2.90
1123 1143 4.778143 ACAATCCCCCGCGCTCAC 62.778 66.667 5.56 0.00 0.00 3.51
1127 1147 3.508840 CTTCACAATCCCCCGCGC 61.509 66.667 0.00 0.00 0.00 6.86
1145 1165 3.542648 AGAGTACGATCGTCCATCTCAA 58.457 45.455 26.48 0.63 0.00 3.02
1241 1261 4.955774 ACCCCACGAACACGACGC 62.956 66.667 0.00 0.00 0.00 5.19
1263 1283 2.038690 CAGCATGGCCCACATCATC 58.961 57.895 0.00 0.00 37.84 2.92
1351 1371 3.305744 GCGTGAGAGGAAGAAGAAAGACT 60.306 47.826 0.00 0.00 0.00 3.24
1352 1372 2.990514 GCGTGAGAGGAAGAAGAAAGAC 59.009 50.000 0.00 0.00 0.00 3.01
1362 1383 1.945819 GCAATTCCAGCGTGAGAGGAA 60.946 52.381 0.00 0.00 46.11 3.36
1488 1514 1.581402 CGCACGCAACAACGAACAA 60.581 52.632 0.00 0.00 36.70 2.83
1492 1518 0.582482 ATAAACGCACGCAACAACGA 59.418 45.000 0.00 0.00 36.70 3.85
1582 1608 1.682854 AGTACAACTTCGTGGTCGGAA 59.317 47.619 0.00 0.00 37.69 4.30
1583 1609 1.321474 AGTACAACTTCGTGGTCGGA 58.679 50.000 0.00 0.00 37.69 4.55
1589 1615 3.361053 CGTTGCTCTAGTACAACTTCGTG 59.639 47.826 20.53 7.88 43.14 4.35
1604 1630 6.299604 CGATCCATATTAATTGACGTTGCTC 58.700 40.000 0.00 0.00 0.00 4.26
1609 1635 8.746530 ACTATACCGATCCATATTAATTGACGT 58.253 33.333 0.00 0.00 0.00 4.34
1624 1650 8.832521 CCTACTTGATGAGATACTATACCGATC 58.167 40.741 0.00 0.00 0.00 3.69
1645 1671 6.293298 CGTAGTACATGCGAAATACTCCTACT 60.293 42.308 0.38 0.00 39.69 2.57
1646 1672 5.850128 CGTAGTACATGCGAAATACTCCTAC 59.150 44.000 0.38 0.00 39.69 3.18
1647 1673 5.528690 ACGTAGTACATGCGAAATACTCCTA 59.471 40.000 9.97 0.00 41.94 2.94
1809 1841 3.881688 AGAGCCATGAACATGAGCAATAC 59.118 43.478 20.85 13.20 41.20 1.89
1811 1843 2.950309 GAGAGCCATGAACATGAGCAAT 59.050 45.455 20.85 13.29 41.20 3.56
1812 1844 2.362736 GAGAGCCATGAACATGAGCAA 58.637 47.619 20.85 0.00 41.20 3.91
1814 1846 1.134159 AGGAGAGCCATGAACATGAGC 60.134 52.381 15.21 15.21 41.20 4.26
1829 1861 3.678252 CGTAGTAGAACCAGACGAGGAGA 60.678 52.174 0.00 0.00 35.59 3.71
1857 1889 0.313043 TTGGAGAACTCGACGGTGAC 59.687 55.000 0.00 0.00 0.00 3.67
1878 1910 0.525668 CCTGGCTTGACGCGTAGTAG 60.526 60.000 13.97 11.16 40.44 2.57
1879 1911 1.509463 CCTGGCTTGACGCGTAGTA 59.491 57.895 13.97 0.00 40.44 1.82
1880 1912 2.261671 CCTGGCTTGACGCGTAGT 59.738 61.111 13.97 0.00 40.44 2.73
1899 1931 3.247648 CGTGTGGTTCCTTACAGTTTCTG 59.752 47.826 0.00 0.00 37.52 3.02
1962 1998 1.654137 GCACGCACTTGTTTCACCG 60.654 57.895 0.00 0.00 0.00 4.94
2000 2041 3.451828 CAATTGCACGCACGCACG 61.452 61.111 0.00 0.00 42.87 5.34
2001 2042 3.098958 CCAATTGCACGCACGCAC 61.099 61.111 0.00 0.00 42.87 5.34
2151 2192 0.527817 GGTACTTGATGCCGGACTCG 60.528 60.000 5.05 0.00 0.00 4.18
2155 2196 0.908910 ACATGGTACTTGATGCCGGA 59.091 50.000 5.05 0.00 35.35 5.14
2244 2285 2.555664 ACCAGGTGGATCTGATCAGTT 58.444 47.619 21.92 14.27 36.93 3.16
2269 2310 1.911357 AGATGATTGTGCACCTGAGGA 59.089 47.619 15.69 0.00 0.00 3.71
2284 2325 7.180322 AGCTTAGTCTGAATCTTGAAGATGA 57.820 36.000 8.68 0.00 34.65 2.92
2302 2343 5.086104 TGCCAAGTTAGTCCTAAGCTTAG 57.914 43.478 24.11 24.11 0.00 2.18
2533 2579 1.153549 GGGCAGGACGTAGCAGAAG 60.154 63.158 9.00 0.00 0.00 2.85
2673 2719 2.471743 GGATATCGACGTTGCTTACAGC 59.528 50.000 0.00 0.00 42.82 4.40
2687 2733 1.349026 ACCCTCCTTGCATGGATATCG 59.651 52.381 20.72 9.74 35.30 2.92
2721 2767 6.701400 GCAACAAAGTTGTCATTACATTCCTT 59.299 34.615 11.09 0.00 41.31 3.36
2727 2773 4.400884 ACCTGCAACAAAGTTGTCATTACA 59.599 37.500 11.09 0.00 41.31 2.41
2728 2774 4.932146 ACCTGCAACAAAGTTGTCATTAC 58.068 39.130 11.09 0.00 41.31 1.89
2729 2775 5.590530 AACCTGCAACAAAGTTGTCATTA 57.409 34.783 11.09 0.00 41.31 1.90
2730 2776 4.470334 AACCTGCAACAAAGTTGTCATT 57.530 36.364 11.09 1.35 41.31 2.57
2731 2777 4.081752 TCAAACCTGCAACAAAGTTGTCAT 60.082 37.500 11.09 0.00 41.31 3.06
3001 3050 3.006756 ATCACCAGCGAGTCGTGGG 62.007 63.158 26.83 23.27 38.25 4.61
3152 3201 1.524482 GAGGAGGTCCAGCATGTCC 59.476 63.158 0.00 0.00 38.89 4.02
3199 3248 2.272471 GTAGGTCAAGGCTGGGGC 59.728 66.667 0.00 0.00 37.82 5.80
3215 3264 1.378882 TTACGTAGGCCTCGATGCGT 61.379 55.000 25.01 21.44 36.52 5.24
3229 3278 2.097918 CGCTCTCGCTCGTTACGT 59.902 61.111 4.24 0.00 0.00 3.57
3233 3282 4.484258 GGCTCGCTCTCGCTCGTT 62.484 66.667 0.00 0.00 35.26 3.85
3758 3807 7.254286 GCAAAACCAAATGTACGTCTGAAAATT 60.254 33.333 0.00 0.00 0.00 1.82
3857 3909 2.340328 GGCCATCACCCCAACGTTC 61.340 63.158 0.00 0.00 0.00 3.95
4025 4077 3.482722 ACTACGGTGATGTACGAACTG 57.517 47.619 0.00 0.00 0.00 3.16
4065 4214 4.502645 CAGTTACCCGCAAAAAGAAAACAG 59.497 41.667 0.00 0.00 0.00 3.16
4067 4216 4.426416 ACAGTTACCCGCAAAAAGAAAAC 58.574 39.130 0.00 0.00 0.00 2.43
4070 4219 3.444388 ACAACAGTTACCCGCAAAAAGAA 59.556 39.130 0.00 0.00 0.00 2.52
4072 4221 3.112580 CACAACAGTTACCCGCAAAAAG 58.887 45.455 0.00 0.00 0.00 2.27
4074 4223 2.093106 ACACAACAGTTACCCGCAAAA 58.907 42.857 0.00 0.00 0.00 2.44
4086 4336 7.481642 ACGAGAGAATAATAGGTACACAACAG 58.518 38.462 0.00 0.00 0.00 3.16
4132 4382 4.216257 GTGAAAGCATGTTTCCAGCTAGAA 59.784 41.667 14.25 0.00 37.70 2.10
4140 4390 2.730550 CAGGGTGAAAGCATGTTTCC 57.269 50.000 14.25 4.70 41.79 3.13
4173 4423 4.733405 GTGTCAGTTCAATCGTTTGTTTCC 59.267 41.667 6.14 0.00 34.32 3.13
4194 4446 1.993370 GGATTTCTTCGTCGTCCTGTG 59.007 52.381 0.00 0.00 0.00 3.66
4198 4450 4.687483 TGTAAAAGGATTTCTTCGTCGTCC 59.313 41.667 0.00 0.00 37.28 4.79
4201 4453 6.656003 AGTTTGTAAAAGGATTTCTTCGTCG 58.344 36.000 0.00 0.00 37.28 5.12
4268 4520 1.021968 GACACACAACTTCCACCACC 58.978 55.000 0.00 0.00 0.00 4.61
4285 4537 1.483004 GCCTCCTTCACTCTTAGGGAC 59.517 57.143 0.00 0.00 32.20 4.46
4809 5113 3.016736 CCCGAAAACTATGCATCCACTT 58.983 45.455 0.19 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.