Multiple sequence alignment - TraesCS2A01G395800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G395800 chr2A 100.000 4060 0 0 1 4060 649483043 649487102 0.000000e+00 7498.0
1 TraesCS2A01G395800 chr2A 93.415 896 43 8 1 896 649477462 649478341 0.000000e+00 1314.0
2 TraesCS2A01G395800 chr2A 97.015 134 4 0 3927 4060 4145783 4145650 4.080000e-55 226.0
3 TraesCS2A01G395800 chr2A 96.970 132 4 0 3929 4060 715888576 715888707 5.280000e-54 222.0
4 TraesCS2A01G395800 chr2A 86.096 187 23 1 106 292 745090401 745090584 8.900000e-47 198.0
5 TraesCS2A01G395800 chr2D 92.780 3504 126 53 425 3858 503435859 503439305 0.000000e+00 4951.0
6 TraesCS2A01G395800 chr2D 95.161 62 2 1 6 67 503435809 503435869 3.340000e-16 97.1
7 TraesCS2A01G395800 chr2B 93.129 2969 95 36 425 3353 591911973 591914872 0.000000e+00 4252.0
8 TraesCS2A01G395800 chr2B 91.797 512 22 5 3350 3858 591914899 591915393 0.000000e+00 695.0
9 TraesCS2A01G395800 chr2B 96.226 53 1 1 1 53 591895100 591895151 7.230000e-13 86.1
10 TraesCS2A01G395800 chr6B 85.406 1206 153 19 1325 2524 479396243 479397431 0.000000e+00 1230.0
11 TraesCS2A01G395800 chr6A 85.055 1191 154 15 1328 2512 480806544 480805372 0.000000e+00 1192.0
12 TraesCS2A01G395800 chr6A 87.879 198 19 4 97 294 264774696 264774888 1.140000e-55 228.0
13 TraesCS2A01G395800 chr6D 84.971 1191 155 15 1328 2512 341079425 341078253 0.000000e+00 1186.0
14 TraesCS2A01G395800 chr6D 89.005 191 16 3 103 293 274304368 274304553 8.780000e-57 231.0
15 TraesCS2A01G395800 chr6D 95.489 133 6 0 3928 4060 248316339 248316207 3.180000e-51 213.0
16 TraesCS2A01G395800 chr1A 79.487 1170 199 31 1335 2494 333498735 333499873 0.000000e+00 793.0
17 TraesCS2A01G395800 chr1A 95.489 133 6 0 3928 4060 497217151 497217283 3.180000e-51 213.0
18 TraesCS2A01G395800 chr1D 79.316 1170 201 31 1335 2494 269515939 269514801 0.000000e+00 782.0
19 TraesCS2A01G395800 chr4D 80.378 1004 160 30 1313 2299 497697174 497698157 0.000000e+00 728.0
20 TraesCS2A01G395800 chr4B 80.279 1004 161 31 1313 2299 639011492 639010509 0.000000e+00 723.0
21 TraesCS2A01G395800 chr4B 85.644 202 25 3 105 306 626391566 626391369 4.110000e-50 209.0
22 TraesCS2A01G395800 chr4A 94.040 151 7 2 3912 4060 47406147 47406297 1.140000e-55 228.0
23 TraesCS2A01G395800 chr4A 97.727 132 3 0 3929 4060 58911797 58911666 1.140000e-55 228.0
24 TraesCS2A01G395800 chr4A 96.992 133 4 0 3928 4060 715443387 715443519 1.470000e-54 224.0
25 TraesCS2A01G395800 chr4A 84.536 194 25 4 103 295 58873616 58873805 1.930000e-43 187.0
26 TraesCS2A01G395800 chr3A 97.727 132 3 0 3929 4060 739760795 739760664 1.140000e-55 228.0
27 TraesCS2A01G395800 chr3A 75.271 461 82 22 1886 2339 598410425 598410860 1.490000e-44 191.0
28 TraesCS2A01G395800 chr3D 89.071 183 17 2 103 285 16131527 16131706 1.470000e-54 224.0
29 TraesCS2A01G395800 chr3D 85.417 144 16 4 292 432 564006344 564006485 1.180000e-30 145.0
30 TraesCS2A01G395800 chr5D 90.798 163 12 3 98 259 551178165 551178325 8.840000e-52 215.0
31 TraesCS2A01G395800 chr5D 88.060 134 10 4 292 421 462454669 462454800 1.950000e-33 154.0
32 TraesCS2A01G395800 chr5D 85.496 131 18 1 292 422 246301961 246301832 7.080000e-28 135.0
33 TraesCS2A01G395800 chrUn 95.489 133 6 0 3928 4060 271930943 271930811 3.180000e-51 213.0
34 TraesCS2A01G395800 chr3B 84.896 192 25 3 106 297 149472073 149471886 1.490000e-44 191.0
35 TraesCS2A01G395800 chr1B 88.618 123 11 3 293 413 577610340 577610461 3.270000e-31 147.0
36 TraesCS2A01G395800 chr5B 87.500 128 11 3 292 417 581220987 581220863 4.230000e-30 143.0
37 TraesCS2A01G395800 chr5B 86.719 128 14 2 292 417 616904686 616904560 5.470000e-29 139.0
38 TraesCS2A01G395800 chr7D 86.131 137 11 5 292 422 64007171 64007305 1.520000e-29 141.0
39 TraesCS2A01G395800 chr5A 85.821 134 14 4 292 422 362159411 362159280 1.970000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G395800 chr2A 649483043 649487102 4059 False 7498.00 7498 100.0000 1 4060 1 chr2A.!!$F2 4059
1 TraesCS2A01G395800 chr2A 649477462 649478341 879 False 1314.00 1314 93.4150 1 896 1 chr2A.!!$F1 895
2 TraesCS2A01G395800 chr2D 503435809 503439305 3496 False 2524.05 4951 93.9705 6 3858 2 chr2D.!!$F1 3852
3 TraesCS2A01G395800 chr2B 591911973 591915393 3420 False 2473.50 4252 92.4630 425 3858 2 chr2B.!!$F2 3433
4 TraesCS2A01G395800 chr6B 479396243 479397431 1188 False 1230.00 1230 85.4060 1325 2524 1 chr6B.!!$F1 1199
5 TraesCS2A01G395800 chr6A 480805372 480806544 1172 True 1192.00 1192 85.0550 1328 2512 1 chr6A.!!$R1 1184
6 TraesCS2A01G395800 chr6D 341078253 341079425 1172 True 1186.00 1186 84.9710 1328 2512 1 chr6D.!!$R2 1184
7 TraesCS2A01G395800 chr1A 333498735 333499873 1138 False 793.00 793 79.4870 1335 2494 1 chr1A.!!$F1 1159
8 TraesCS2A01G395800 chr1D 269514801 269515939 1138 True 782.00 782 79.3160 1335 2494 1 chr1D.!!$R1 1159
9 TraesCS2A01G395800 chr4D 497697174 497698157 983 False 728.00 728 80.3780 1313 2299 1 chr4D.!!$F1 986
10 TraesCS2A01G395800 chr4B 639010509 639011492 983 True 723.00 723 80.2790 1313 2299 1 chr4B.!!$R2 986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 825 0.035056 CCCACTCAATCCCAGTCCAC 60.035 60.0 0.0 0.0 0.0 4.02 F
1034 1059 0.034670 AGGAAGAGGCATTGTGAGGC 60.035 55.0 0.0 0.0 0.0 4.70 F
2760 2824 1.830279 AGGATTGCTGATGTGTGTGG 58.170 50.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2650 2700 2.108168 ACGCTTCTCCTACCATTGCTA 58.892 47.619 0.0 0.0 0.0 3.49 R
2872 2936 2.616458 CCCCTCCTTCCCCACCTTG 61.616 68.421 0.0 0.0 0.0 3.61 R
3922 4035 0.323957 AAACGGAGGGAGTACTTGGC 59.676 55.000 0.0 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 9.539825 CTCTAACACAAATATCAGTCTTGCTAT 57.460 33.333 0.00 0.00 0.00 2.97
167 168 5.163530 TGTTTAGCATTGTGCCAGATATTGG 60.164 40.000 0.00 0.94 46.52 3.16
285 286 6.818142 AGCCAAATATTAGCAACAAACCAATC 59.182 34.615 11.71 0.00 0.00 2.67
299 300 5.702670 ACAAACCAATCATGCTCTATATCCG 59.297 40.000 0.00 0.00 0.00 4.18
310 311 7.777440 TCATGCTCTATATCCGTGAGATCTTAT 59.223 37.037 0.00 0.00 36.33 1.73
363 364 9.938670 TTTCATTTTTCATTTTTCTCTTGCATG 57.061 25.926 0.00 0.00 0.00 4.06
397 398 6.419484 TGACTGAGACTTGGTTAAATCTCA 57.581 37.500 3.03 3.03 44.05 3.27
403 404 5.471257 AGACTTGGTTAAATCTCAGTCGAC 58.529 41.667 7.70 7.70 0.00 4.20
423 424 2.231529 CTGAGACCTAGTCATACCCCG 58.768 57.143 0.00 0.00 34.60 5.73
437 438 1.674322 CCCCGCAAATATAGCCGGG 60.674 63.158 16.05 16.05 42.58 5.73
468 469 1.590932 CCTCCCTGATCTGCAAATCG 58.409 55.000 0.00 0.00 0.00 3.34
475 476 1.077212 ATCTGCAAATCGCCAGCCT 60.077 52.632 0.00 0.00 41.33 4.58
518 519 1.267532 CGGACCGAAATCTGCAAATCG 60.268 52.381 8.64 0.00 35.19 3.34
547 548 5.127491 AGAACATCCCACGTTTCTGTAAAA 58.873 37.500 0.00 0.00 0.00 1.52
651 657 8.514330 TGGTAGGAAATAAATAAATGCGAACT 57.486 30.769 0.00 0.00 0.00 3.01
683 689 7.873739 AGCAGTAGTTGAAAAATAAATGTGC 57.126 32.000 0.00 0.00 0.00 4.57
812 825 0.035056 CCCACTCAATCCCAGTCCAC 60.035 60.000 0.00 0.00 0.00 4.02
976 1001 4.048470 GCCAGAACCCCACTCCCC 62.048 72.222 0.00 0.00 0.00 4.81
977 1002 3.717294 CCAGAACCCCACTCCCCG 61.717 72.222 0.00 0.00 0.00 5.73
978 1003 2.606519 CAGAACCCCACTCCCCGA 60.607 66.667 0.00 0.00 0.00 5.14
979 1004 1.995626 CAGAACCCCACTCCCCGAT 60.996 63.158 0.00 0.00 0.00 4.18
980 1005 0.689745 CAGAACCCCACTCCCCGATA 60.690 60.000 0.00 0.00 0.00 2.92
982 1007 1.691689 AACCCCACTCCCCGATACC 60.692 63.158 0.00 0.00 0.00 2.73
983 1008 2.041301 CCCCACTCCCCGATACCA 60.041 66.667 0.00 0.00 0.00 3.25
984 1009 2.140792 CCCCACTCCCCGATACCAG 61.141 68.421 0.00 0.00 0.00 4.00
985 1010 1.382695 CCCACTCCCCGATACCAGT 60.383 63.158 0.00 0.00 0.00 4.00
986 1011 1.400530 CCCACTCCCCGATACCAGTC 61.401 65.000 0.00 0.00 0.00 3.51
987 1012 1.734137 CACTCCCCGATACCAGTCG 59.266 63.158 0.00 0.00 41.13 4.18
1005 1030 4.910585 CGGTCAGCATACCCCGCC 62.911 72.222 2.19 0.00 36.03 6.13
1007 1032 4.910585 GTCAGCATACCCCGCCCG 62.911 72.222 0.00 0.00 0.00 6.13
1034 1059 0.034670 AGGAAGAGGCATTGTGAGGC 60.035 55.000 0.00 0.00 0.00 4.70
1172 1203 3.155167 CCCCTCACCGCCCTCTAC 61.155 72.222 0.00 0.00 0.00 2.59
2585 2634 7.389803 AATGGCCCAATTGCTAATTAAAAAC 57.610 32.000 0.00 0.00 0.00 2.43
2592 2641 9.581099 CCCAATTGCTAATTAAAAACGAGTATT 57.419 29.630 0.00 0.00 0.00 1.89
2622 2672 9.751542 CACTAAACTATACAGTCCAAAGATAGG 57.248 37.037 0.00 0.00 32.29 2.57
2679 2735 1.853963 AGGAGAAGCGTATCCACTGT 58.146 50.000 15.79 0.00 37.63 3.55
2723 2779 3.117046 GACTACCTGAGCGAATGTTAGC 58.883 50.000 0.00 0.00 0.00 3.09
2728 2784 2.472861 CCTGAGCGAATGTTAGCATACG 59.527 50.000 0.00 0.00 34.39 3.06
2732 2795 3.040795 AGCGAATGTTAGCATACGTACG 58.959 45.455 15.01 15.01 34.39 3.67
2760 2824 1.830279 AGGATTGCTGATGTGTGTGG 58.170 50.000 0.00 0.00 0.00 4.17
2763 2827 2.557924 GGATTGCTGATGTGTGTGGAAA 59.442 45.455 0.00 0.00 0.00 3.13
2764 2828 3.568538 GATTGCTGATGTGTGTGGAAAC 58.431 45.455 0.00 0.00 0.00 2.78
2765 2829 2.049888 TGCTGATGTGTGTGGAAACA 57.950 45.000 0.00 0.00 38.70 2.83
2806 2870 3.734463 TGGCGAGTTTGTTTACTGATGA 58.266 40.909 0.00 0.00 0.00 2.92
2807 2871 4.323417 TGGCGAGTTTGTTTACTGATGAT 58.677 39.130 0.00 0.00 0.00 2.45
2808 2872 4.154015 TGGCGAGTTTGTTTACTGATGATG 59.846 41.667 0.00 0.00 0.00 3.07
2809 2873 4.091424 GCGAGTTTGTTTACTGATGATGC 58.909 43.478 0.00 0.00 0.00 3.91
2994 3058 4.232188 AGGAGAACACTGTAGGACGATA 57.768 45.455 0.00 0.00 0.00 2.92
3002 3066 9.128404 AGAACACTGTAGGACGATACAATATTA 57.872 33.333 0.00 0.00 35.32 0.98
3095 3162 0.379669 CGTACCTACTACCGTGCTGG 59.620 60.000 0.00 0.00 46.41 4.85
3112 3179 4.389576 GTGCTTTGCGCCTCACGG 62.390 66.667 4.18 0.00 43.93 4.94
3153 3224 3.127533 CTCGAAGCTTTGGCCGGG 61.128 66.667 13.87 2.12 39.73 5.73
3161 3232 3.256960 TTTGGCCGGGCTTCCTCT 61.257 61.111 29.87 0.00 0.00 3.69
3162 3233 3.567579 TTTGGCCGGGCTTCCTCTG 62.568 63.158 29.87 0.00 0.00 3.35
3166 3237 3.710722 CCGGGCTTCCTCTGCACT 61.711 66.667 0.00 0.00 0.00 4.40
3283 3364 1.455822 ACTGGGATTTGGACTTGGGA 58.544 50.000 0.00 0.00 0.00 4.37
3286 3367 2.827921 CTGGGATTTGGACTTGGGAAAG 59.172 50.000 0.00 0.00 0.00 2.62
3287 3368 1.550524 GGGATTTGGACTTGGGAAAGC 59.449 52.381 0.00 0.00 0.00 3.51
3288 3369 2.529632 GGATTTGGACTTGGGAAAGCT 58.470 47.619 0.00 0.00 0.00 3.74
3293 3374 1.063266 TGGACTTGGGAAAGCTTTGGT 60.063 47.619 18.30 7.19 0.00 3.67
3379 3490 3.520569 GGCTTGTGTTTGTGTGTGAAAT 58.479 40.909 0.00 0.00 0.00 2.17
3454 3567 4.760047 CGTGTCGGGCAAGAGGGG 62.760 72.222 0.00 0.00 0.00 4.79
3706 3819 0.322456 TGGCCATGAAAAGGAGGTCG 60.322 55.000 0.00 0.00 0.00 4.79
3813 3926 5.277974 CGAGTATTTTATGCCATTCCTGTGG 60.278 44.000 0.00 0.00 42.35 4.17
3827 3940 6.467775 CCATTCCTGTGGTAATGATTCCCTAT 60.468 42.308 0.00 0.00 35.53 2.57
3855 3968 6.997239 AGTCTACAGTGTCAATCGTATACA 57.003 37.500 0.00 0.00 0.00 2.29
3856 3969 7.017498 AGTCTACAGTGTCAATCGTATACAG 57.983 40.000 0.00 0.00 0.00 2.74
3857 3970 6.598457 AGTCTACAGTGTCAATCGTATACAGT 59.402 38.462 0.00 0.00 0.00 3.55
3858 3971 6.687531 GTCTACAGTGTCAATCGTATACAGTG 59.312 42.308 0.00 7.73 45.72 3.66
3859 3972 4.174009 ACAGTGTCAATCGTATACAGTGC 58.826 43.478 3.32 0.00 44.67 4.40
3860 3973 4.082190 ACAGTGTCAATCGTATACAGTGCT 60.082 41.667 3.32 0.00 44.67 4.40
3861 3974 5.124936 ACAGTGTCAATCGTATACAGTGCTA 59.875 40.000 3.32 0.00 44.67 3.49
3862 3975 5.455849 CAGTGTCAATCGTATACAGTGCTAC 59.544 44.000 3.32 3.46 37.64 3.58
3863 3976 5.357314 AGTGTCAATCGTATACAGTGCTACT 59.643 40.000 3.32 5.27 0.00 2.57
3864 3977 6.541278 AGTGTCAATCGTATACAGTGCTACTA 59.459 38.462 3.32 0.00 0.00 1.82
3865 3978 6.632035 GTGTCAATCGTATACAGTGCTACTAC 59.368 42.308 3.32 0.00 0.00 2.73
3866 3979 6.541278 TGTCAATCGTATACAGTGCTACTACT 59.459 38.462 3.32 0.00 0.00 2.57
3867 3980 7.066645 TGTCAATCGTATACAGTGCTACTACTT 59.933 37.037 3.32 0.00 0.00 2.24
3868 3981 7.376336 GTCAATCGTATACAGTGCTACTACTTG 59.624 40.741 3.32 0.00 0.00 3.16
3869 3982 6.939132 ATCGTATACAGTGCTACTACTTGT 57.061 37.500 3.32 0.00 0.00 3.16
3870 3983 6.748333 TCGTATACAGTGCTACTACTTGTT 57.252 37.500 3.32 0.00 0.00 2.83
3871 3984 7.149569 TCGTATACAGTGCTACTACTTGTTT 57.850 36.000 3.32 0.00 0.00 2.83
3872 3985 8.267620 TCGTATACAGTGCTACTACTTGTTTA 57.732 34.615 3.32 0.00 0.00 2.01
3873 3986 8.393366 TCGTATACAGTGCTACTACTTGTTTAG 58.607 37.037 3.32 0.00 0.00 1.85
3874 3987 7.642978 CGTATACAGTGCTACTACTTGTTTAGG 59.357 40.741 3.32 0.00 0.00 2.69
3875 3988 5.148651 ACAGTGCTACTACTTGTTTAGGG 57.851 43.478 0.00 0.00 0.00 3.53
3876 3989 4.591924 ACAGTGCTACTACTTGTTTAGGGT 59.408 41.667 0.00 0.00 0.00 4.34
3877 3990 5.169295 CAGTGCTACTACTTGTTTAGGGTC 58.831 45.833 0.00 0.00 0.00 4.46
3878 3991 5.047235 CAGTGCTACTACTTGTTTAGGGTCT 60.047 44.000 0.00 0.00 0.00 3.85
3879 3992 5.047235 AGTGCTACTACTTGTTTAGGGTCTG 60.047 44.000 0.00 0.00 0.00 3.51
3880 3993 4.836736 TGCTACTACTTGTTTAGGGTCTGT 59.163 41.667 0.00 0.00 0.00 3.41
3881 3994 5.306160 TGCTACTACTTGTTTAGGGTCTGTT 59.694 40.000 0.00 0.00 0.00 3.16
3882 3995 6.183361 TGCTACTACTTGTTTAGGGTCTGTTT 60.183 38.462 0.00 0.00 0.00 2.83
3883 3996 6.147328 GCTACTACTTGTTTAGGGTCTGTTTG 59.853 42.308 0.00 0.00 0.00 2.93
3884 3997 5.374071 ACTACTTGTTTAGGGTCTGTTTGG 58.626 41.667 0.00 0.00 0.00 3.28
3885 3998 4.245251 ACTTGTTTAGGGTCTGTTTGGT 57.755 40.909 0.00 0.00 0.00 3.67
3886 3999 4.606210 ACTTGTTTAGGGTCTGTTTGGTT 58.394 39.130 0.00 0.00 0.00 3.67
3887 4000 5.020795 ACTTGTTTAGGGTCTGTTTGGTTT 58.979 37.500 0.00 0.00 0.00 3.27
3888 4001 5.482526 ACTTGTTTAGGGTCTGTTTGGTTTT 59.517 36.000 0.00 0.00 0.00 2.43
3889 4002 5.585820 TGTTTAGGGTCTGTTTGGTTTTC 57.414 39.130 0.00 0.00 0.00 2.29
3890 4003 5.017490 TGTTTAGGGTCTGTTTGGTTTTCA 58.983 37.500 0.00 0.00 0.00 2.69
3891 4004 5.105675 TGTTTAGGGTCTGTTTGGTTTTCAC 60.106 40.000 0.00 0.00 0.00 3.18
3892 4005 3.382083 AGGGTCTGTTTGGTTTTCACT 57.618 42.857 0.00 0.00 0.00 3.41
3893 4006 3.288092 AGGGTCTGTTTGGTTTTCACTC 58.712 45.455 0.00 0.00 0.00 3.51
3894 4007 3.020984 GGGTCTGTTTGGTTTTCACTCA 58.979 45.455 0.00 0.00 0.00 3.41
3895 4008 3.181490 GGGTCTGTTTGGTTTTCACTCAC 60.181 47.826 0.00 0.00 0.00 3.51
3896 4009 3.181490 GGTCTGTTTGGTTTTCACTCACC 60.181 47.826 0.00 0.00 0.00 4.02
3897 4010 3.020984 TCTGTTTGGTTTTCACTCACCC 58.979 45.455 0.00 0.00 31.24 4.61
3898 4011 3.023832 CTGTTTGGTTTTCACTCACCCT 58.976 45.455 0.00 0.00 31.24 4.34
3899 4012 4.080243 TCTGTTTGGTTTTCACTCACCCTA 60.080 41.667 0.00 0.00 31.24 3.53
3900 4013 3.949113 TGTTTGGTTTTCACTCACCCTAC 59.051 43.478 0.00 0.00 31.24 3.18
3901 4014 2.943036 TGGTTTTCACTCACCCTACC 57.057 50.000 0.00 0.00 31.24 3.18
3902 4015 2.128535 TGGTTTTCACTCACCCTACCA 58.871 47.619 0.00 0.00 31.24 3.25
3903 4016 2.510382 TGGTTTTCACTCACCCTACCAA 59.490 45.455 0.00 0.00 31.71 3.67
3904 4017 3.053544 TGGTTTTCACTCACCCTACCAAA 60.054 43.478 0.00 0.00 31.71 3.28
3905 4018 3.955551 GGTTTTCACTCACCCTACCAAAA 59.044 43.478 0.00 0.00 0.00 2.44
3906 4019 4.202080 GGTTTTCACTCACCCTACCAAAAC 60.202 45.833 0.00 0.00 33.46 2.43
3907 4020 2.536761 TCACTCACCCTACCAAAACG 57.463 50.000 0.00 0.00 0.00 3.60
3908 4021 1.764134 TCACTCACCCTACCAAAACGT 59.236 47.619 0.00 0.00 0.00 3.99
3909 4022 2.171027 TCACTCACCCTACCAAAACGTT 59.829 45.455 0.00 0.00 0.00 3.99
3910 4023 2.289547 CACTCACCCTACCAAAACGTTG 59.710 50.000 0.00 0.00 34.25 4.10
3911 4024 2.092807 ACTCACCCTACCAAAACGTTGT 60.093 45.455 0.00 0.00 32.40 3.32
3912 4025 2.946990 CTCACCCTACCAAAACGTTGTT 59.053 45.455 0.00 0.00 32.40 2.83
3913 4026 3.354467 TCACCCTACCAAAACGTTGTTT 58.646 40.909 0.00 0.00 32.40 2.83
3914 4027 3.128938 TCACCCTACCAAAACGTTGTTTG 59.871 43.478 0.00 3.37 38.07 2.93
3923 4036 3.797348 AAACGTTGTTTGGTTTGTTGC 57.203 38.095 0.00 0.00 35.21 4.17
3924 4037 1.715993 ACGTTGTTTGGTTTGTTGCC 58.284 45.000 0.00 0.00 0.00 4.52
3925 4038 1.000955 ACGTTGTTTGGTTTGTTGCCA 59.999 42.857 0.00 0.00 0.00 4.92
3926 4039 2.069273 CGTTGTTTGGTTTGTTGCCAA 58.931 42.857 0.00 0.00 43.51 4.52
3927 4040 2.093467 CGTTGTTTGGTTTGTTGCCAAG 59.907 45.455 0.00 0.00 45.47 3.61
3928 4041 3.070748 GTTGTTTGGTTTGTTGCCAAGT 58.929 40.909 0.00 0.00 45.47 3.16
3929 4042 4.246458 GTTGTTTGGTTTGTTGCCAAGTA 58.754 39.130 0.00 0.00 45.47 2.24
3930 4043 3.851098 TGTTTGGTTTGTTGCCAAGTAC 58.149 40.909 0.00 0.00 45.47 2.73
3931 4044 3.511934 TGTTTGGTTTGTTGCCAAGTACT 59.488 39.130 0.00 0.00 45.47 2.73
3932 4045 4.109766 GTTTGGTTTGTTGCCAAGTACTC 58.890 43.478 0.00 0.00 45.47 2.59
3933 4046 2.303175 TGGTTTGTTGCCAAGTACTCC 58.697 47.619 0.00 0.00 32.29 3.85
3934 4047 1.611977 GGTTTGTTGCCAAGTACTCCC 59.388 52.381 0.00 0.00 0.00 4.30
3935 4048 2.583143 GTTTGTTGCCAAGTACTCCCT 58.417 47.619 0.00 0.00 0.00 4.20
3936 4049 2.552743 GTTTGTTGCCAAGTACTCCCTC 59.447 50.000 0.00 0.00 0.00 4.30
3937 4050 0.690762 TGTTGCCAAGTACTCCCTCC 59.309 55.000 0.00 0.00 0.00 4.30
3938 4051 0.391263 GTTGCCAAGTACTCCCTCCG 60.391 60.000 0.00 0.00 0.00 4.63
3939 4052 0.834687 TTGCCAAGTACTCCCTCCGT 60.835 55.000 0.00 0.00 0.00 4.69
3940 4053 0.834687 TGCCAAGTACTCCCTCCGTT 60.835 55.000 0.00 0.00 0.00 4.44
3941 4054 0.323957 GCCAAGTACTCCCTCCGTTT 59.676 55.000 0.00 0.00 0.00 3.60
3942 4055 1.271217 GCCAAGTACTCCCTCCGTTTT 60.271 52.381 0.00 0.00 0.00 2.43
3943 4056 2.812983 GCCAAGTACTCCCTCCGTTTTT 60.813 50.000 0.00 0.00 0.00 1.94
3944 4057 3.557686 GCCAAGTACTCCCTCCGTTTTTA 60.558 47.826 0.00 0.00 0.00 1.52
3945 4058 4.840271 CCAAGTACTCCCTCCGTTTTTAT 58.160 43.478 0.00 0.00 0.00 1.40
3946 4059 5.250982 CCAAGTACTCCCTCCGTTTTTATT 58.749 41.667 0.00 0.00 0.00 1.40
3947 4060 5.708697 CCAAGTACTCCCTCCGTTTTTATTT 59.291 40.000 0.00 0.00 0.00 1.40
3948 4061 6.880529 CCAAGTACTCCCTCCGTTTTTATTTA 59.119 38.462 0.00 0.00 0.00 1.40
3949 4062 7.065443 CCAAGTACTCCCTCCGTTTTTATTTAG 59.935 40.741 0.00 0.00 0.00 1.85
3950 4063 7.250032 AGTACTCCCTCCGTTTTTATTTAGT 57.750 36.000 0.00 0.00 0.00 2.24
3951 4064 7.101700 AGTACTCCCTCCGTTTTTATTTAGTG 58.898 38.462 0.00 0.00 0.00 2.74
3952 4065 5.872963 ACTCCCTCCGTTTTTATTTAGTGT 58.127 37.500 0.00 0.00 0.00 3.55
3953 4066 5.704053 ACTCCCTCCGTTTTTATTTAGTGTG 59.296 40.000 0.00 0.00 0.00 3.82
3954 4067 4.456566 TCCCTCCGTTTTTATTTAGTGTGC 59.543 41.667 0.00 0.00 0.00 4.57
3955 4068 4.216687 CCCTCCGTTTTTATTTAGTGTGCA 59.783 41.667 0.00 0.00 0.00 4.57
3956 4069 5.105917 CCCTCCGTTTTTATTTAGTGTGCAT 60.106 40.000 0.00 0.00 0.00 3.96
3957 4070 6.094325 CCCTCCGTTTTTATTTAGTGTGCATA 59.906 38.462 0.00 0.00 0.00 3.14
3958 4071 7.201785 CCCTCCGTTTTTATTTAGTGTGCATAT 60.202 37.037 0.00 0.00 0.00 1.78
3959 4072 8.188139 CCTCCGTTTTTATTTAGTGTGCATATT 58.812 33.333 0.00 0.00 0.00 1.28
3962 4075 9.445786 CCGTTTTTATTTAGTGTGCATATTAGG 57.554 33.333 0.00 0.00 0.00 2.69
3963 4076 9.997482 CGTTTTTATTTAGTGTGCATATTAGGT 57.003 29.630 0.00 0.00 0.00 3.08
3969 4082 7.987750 TTTAGTGTGCATATTAGGTTTGACA 57.012 32.000 0.00 0.00 0.00 3.58
3970 4083 7.609760 TTAGTGTGCATATTAGGTTTGACAG 57.390 36.000 0.00 0.00 0.00 3.51
3971 4084 5.804639 AGTGTGCATATTAGGTTTGACAGA 58.195 37.500 0.00 0.00 0.00 3.41
3972 4085 6.237901 AGTGTGCATATTAGGTTTGACAGAA 58.762 36.000 0.00 0.00 0.00 3.02
3973 4086 6.372659 AGTGTGCATATTAGGTTTGACAGAAG 59.627 38.462 0.00 0.00 0.00 2.85
3974 4087 6.149474 GTGTGCATATTAGGTTTGACAGAAGT 59.851 38.462 0.00 0.00 0.00 3.01
3975 4088 6.371548 TGTGCATATTAGGTTTGACAGAAGTC 59.628 38.462 0.00 0.00 45.19 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 8.097078 GCTCATAGCATTGATTGAGACTTAAT 57.903 34.615 14.23 0.00 41.89 1.40
100 101 5.232838 GCACAAAACCAATTATGCTCATAGC 59.767 40.000 0.00 0.00 42.82 2.97
174 175 9.582648 AAGACAACTTGGTAACCAATTAGTAAT 57.417 29.630 0.00 0.00 43.07 1.89
175 176 8.842280 CAAGACAACTTGGTAACCAATTAGTAA 58.158 33.333 0.00 0.00 46.67 2.24
176 177 8.385898 CAAGACAACTTGGTAACCAATTAGTA 57.614 34.615 0.00 0.00 46.67 1.82
177 178 7.272037 CAAGACAACTTGGTAACCAATTAGT 57.728 36.000 0.00 0.00 46.67 2.24
285 286 5.833406 AGATCTCACGGATATAGAGCATG 57.167 43.478 0.00 0.00 34.33 4.06
355 356 9.317936 CTCAGTCAAGTAATATAACATGCAAGA 57.682 33.333 0.00 0.00 0.00 3.02
356 357 9.317936 TCTCAGTCAAGTAATATAACATGCAAG 57.682 33.333 0.00 0.00 0.00 4.01
363 364 9.654663 AACCAAGTCTCAGTCAAGTAATATAAC 57.345 33.333 0.00 0.00 0.00 1.89
368 369 9.220767 GATTTAACCAAGTCTCAGTCAAGTAAT 57.779 33.333 0.00 0.00 0.00 1.89
397 398 3.637911 ATGACTAGGTCTCAGTCGACT 57.362 47.619 13.58 13.58 44.44 4.18
403 404 2.231529 CGGGGTATGACTAGGTCTCAG 58.768 57.143 0.00 0.00 33.15 3.35
412 413 3.307480 GGCTATATTTGCGGGGTATGACT 60.307 47.826 0.00 0.00 0.00 3.41
413 414 3.007635 GGCTATATTTGCGGGGTATGAC 58.992 50.000 0.00 0.00 0.00 3.06
423 424 0.811281 GATGCCCCGGCTATATTTGC 59.189 55.000 7.35 0.00 42.51 3.68
468 469 3.950395 AGTTGATTAGATTTCAGGCTGGC 59.050 43.478 15.73 2.14 0.00 4.85
475 476 5.465390 CGCCGGAATAGTTGATTAGATTTCA 59.535 40.000 5.05 0.00 0.00 2.69
518 519 4.455877 AGAAACGTGGGATGTTCTTCAATC 59.544 41.667 0.00 0.00 0.00 2.67
529 530 5.223449 TCTCTTTTACAGAAACGTGGGAT 57.777 39.130 0.00 0.00 0.00 3.85
683 689 1.553248 TGTCCCGTCCCTATTCAAGTG 59.447 52.381 0.00 0.00 0.00 3.16
774 787 4.958897 TTTTCGGGTGCGGTGGGG 62.959 66.667 0.00 0.00 0.00 4.96
775 788 3.666253 GTTTTCGGGTGCGGTGGG 61.666 66.667 0.00 0.00 0.00 4.61
776 789 3.666253 GGTTTTCGGGTGCGGTGG 61.666 66.667 0.00 0.00 0.00 4.61
777 790 3.666253 GGGTTTTCGGGTGCGGTG 61.666 66.667 0.00 0.00 0.00 4.94
778 791 4.960866 GGGGTTTTCGGGTGCGGT 62.961 66.667 0.00 0.00 0.00 5.68
927 951 3.265489 TGGGAAGGAGATTTACAAGGGT 58.735 45.455 0.00 0.00 0.00 4.34
931 955 6.659242 GTGAGATTTGGGAAGGAGATTTACAA 59.341 38.462 0.00 0.00 0.00 2.41
976 1001 1.298413 CTGACCGCGACTGGTATCG 60.298 63.158 8.23 0.00 44.01 2.92
977 1002 1.589196 GCTGACCGCGACTGGTATC 60.589 63.158 8.23 0.00 44.01 2.24
978 1003 1.676678 ATGCTGACCGCGACTGGTAT 61.677 55.000 8.23 0.00 44.01 2.73
979 1004 1.033202 TATGCTGACCGCGACTGGTA 61.033 55.000 8.23 0.00 44.01 3.25
982 1007 1.878522 GGTATGCTGACCGCGACTG 60.879 63.158 8.23 6.73 43.27 3.51
983 1008 2.494918 GGTATGCTGACCGCGACT 59.505 61.111 8.23 0.00 43.27 4.18
984 1009 2.585247 GGGTATGCTGACCGCGAC 60.585 66.667 8.23 1.20 43.27 5.19
985 1010 3.845259 GGGGTATGCTGACCGCGA 61.845 66.667 8.23 0.00 41.95 5.87
1172 1203 1.546476 AGGTGGAGCGTGTAGAAGAAG 59.454 52.381 0.00 0.00 0.00 2.85
2600 2650 9.838339 CATTCCTATCTTTGGACTGTATAGTTT 57.162 33.333 0.00 0.00 37.25 2.66
2650 2700 2.108168 ACGCTTCTCCTACCATTGCTA 58.892 47.619 0.00 0.00 0.00 3.49
2679 2735 5.996513 TCAACCAAACCTAGTACGCAATTAA 59.003 36.000 0.00 0.00 0.00 1.40
2723 2779 8.545420 AGCAATCCTTTATTAAACGTACGTATG 58.455 33.333 23.12 13.27 0.00 2.39
2728 2784 8.395633 ACATCAGCAATCCTTTATTAAACGTAC 58.604 33.333 0.00 0.00 0.00 3.67
2732 2795 8.028938 ACACACATCAGCAATCCTTTATTAAAC 58.971 33.333 0.00 0.00 0.00 2.01
2872 2936 2.616458 CCCCTCCTTCCCCACCTTG 61.616 68.421 0.00 0.00 0.00 3.61
2966 3030 5.010933 TCCTACAGTGTTCTCCTAACAGAG 58.989 45.833 0.00 0.00 35.04 3.35
2967 3031 4.765856 GTCCTACAGTGTTCTCCTAACAGA 59.234 45.833 0.00 0.00 0.00 3.41
3008 3072 6.014242 TCCAGCAAGAATACAAGAAGAGAGAA 60.014 38.462 0.00 0.00 0.00 2.87
3153 3224 1.703438 CGATGCAGTGCAGAGGAAGC 61.703 60.000 24.20 0.00 43.65 3.86
3230 3301 2.997952 TTTAGCACAGCGAACCGGCA 62.998 55.000 0.00 0.00 34.64 5.69
3233 3304 0.165944 CCTTTTAGCACAGCGAACCG 59.834 55.000 0.00 0.00 0.00 4.44
3283 3364 3.534554 CAAAGGCTGAAACCAAAGCTTT 58.465 40.909 5.69 5.69 40.08 3.51
3286 3367 1.138859 ACCAAAGGCTGAAACCAAAGC 59.861 47.619 0.00 0.00 38.76 3.51
3287 3368 2.483538 CCACCAAAGGCTGAAACCAAAG 60.484 50.000 0.00 0.00 0.00 2.77
3288 3369 1.484240 CCACCAAAGGCTGAAACCAAA 59.516 47.619 0.00 0.00 0.00 3.28
3352 3463 2.124693 ACAAACACAAGCCCCCACG 61.125 57.895 0.00 0.00 0.00 4.94
3361 3472 4.248859 CCCAATTTCACACACAAACACAA 58.751 39.130 0.00 0.00 0.00 3.33
3441 3554 3.077907 CTTTCCCCTCTTGCCCGA 58.922 61.111 0.00 0.00 0.00 5.14
3454 3567 3.774702 GTCGCCGGACGTGCTTTC 61.775 66.667 5.05 0.00 44.19 2.62
3484 3597 1.669999 AAAGCATGCCAAGCCGGATC 61.670 55.000 15.66 0.00 36.56 3.36
3485 3598 1.669999 GAAAGCATGCCAAGCCGGAT 61.670 55.000 15.66 0.00 36.56 4.18
3486 3599 2.283101 AAAGCATGCCAAGCCGGA 60.283 55.556 15.66 0.00 36.56 5.14
3487 3600 2.182537 GAAAGCATGCCAAGCCGG 59.817 61.111 15.66 0.00 38.11 6.13
3488 3601 1.153901 CAGAAAGCATGCCAAGCCG 60.154 57.895 15.66 0.00 0.00 5.52
3657 3770 3.978855 GCCGACAAGTGTAAATGGTTTTC 59.021 43.478 0.00 0.00 0.00 2.29
3706 3819 2.877691 GGGAGAACGTTGGCATGC 59.122 61.111 9.90 9.90 0.00 4.06
3813 3926 8.421784 TGTAGACTTGTCATAGGGAATCATTAC 58.578 37.037 3.49 0.00 0.00 1.89
3827 3940 4.037565 ACGATTGACACTGTAGACTTGTCA 59.962 41.667 11.42 11.42 46.11 3.58
3855 3968 5.047235 CAGACCCTAAACAAGTAGTAGCACT 60.047 44.000 0.00 0.00 0.00 4.40
3856 3969 5.169295 CAGACCCTAAACAAGTAGTAGCAC 58.831 45.833 0.00 0.00 0.00 4.40
3857 3970 4.836736 ACAGACCCTAAACAAGTAGTAGCA 59.163 41.667 0.00 0.00 0.00 3.49
3858 3971 5.402997 ACAGACCCTAAACAAGTAGTAGC 57.597 43.478 0.00 0.00 0.00 3.58
3859 3972 6.649557 CCAAACAGACCCTAAACAAGTAGTAG 59.350 42.308 0.00 0.00 0.00 2.57
3860 3973 6.100134 ACCAAACAGACCCTAAACAAGTAGTA 59.900 38.462 0.00 0.00 0.00 1.82
3861 3974 5.104235 ACCAAACAGACCCTAAACAAGTAGT 60.104 40.000 0.00 0.00 0.00 2.73
3862 3975 5.374071 ACCAAACAGACCCTAAACAAGTAG 58.626 41.667 0.00 0.00 0.00 2.57
3863 3976 5.376756 ACCAAACAGACCCTAAACAAGTA 57.623 39.130 0.00 0.00 0.00 2.24
3864 3977 4.245251 ACCAAACAGACCCTAAACAAGT 57.755 40.909 0.00 0.00 0.00 3.16
3865 3978 5.592104 AAACCAAACAGACCCTAAACAAG 57.408 39.130 0.00 0.00 0.00 3.16
3866 3979 5.480772 TGAAAACCAAACAGACCCTAAACAA 59.519 36.000 0.00 0.00 0.00 2.83
3867 3980 5.017490 TGAAAACCAAACAGACCCTAAACA 58.983 37.500 0.00 0.00 0.00 2.83
3868 3981 5.126545 AGTGAAAACCAAACAGACCCTAAAC 59.873 40.000 0.00 0.00 0.00 2.01
3869 3982 5.265989 AGTGAAAACCAAACAGACCCTAAA 58.734 37.500 0.00 0.00 0.00 1.85
3870 3983 4.862371 AGTGAAAACCAAACAGACCCTAA 58.138 39.130 0.00 0.00 0.00 2.69
3871 3984 4.080243 TGAGTGAAAACCAAACAGACCCTA 60.080 41.667 0.00 0.00 0.00 3.53
3872 3985 3.288092 GAGTGAAAACCAAACAGACCCT 58.712 45.455 0.00 0.00 0.00 4.34
3873 3986 3.020984 TGAGTGAAAACCAAACAGACCC 58.979 45.455 0.00 0.00 0.00 4.46
3874 3987 3.181490 GGTGAGTGAAAACCAAACAGACC 60.181 47.826 0.00 0.00 36.41 3.85
3875 3988 3.181490 GGGTGAGTGAAAACCAAACAGAC 60.181 47.826 0.00 0.00 38.27 3.51
3876 3989 3.020984 GGGTGAGTGAAAACCAAACAGA 58.979 45.455 0.00 0.00 38.27 3.41
3877 3990 3.023832 AGGGTGAGTGAAAACCAAACAG 58.976 45.455 0.00 0.00 38.27 3.16
3878 3991 3.094484 AGGGTGAGTGAAAACCAAACA 57.906 42.857 0.00 0.00 38.27 2.83
3879 3992 3.317149 GGTAGGGTGAGTGAAAACCAAAC 59.683 47.826 0.00 0.00 38.27 2.93
3880 3993 3.053544 TGGTAGGGTGAGTGAAAACCAAA 60.054 43.478 0.00 0.00 38.27 3.28
3881 3994 2.510382 TGGTAGGGTGAGTGAAAACCAA 59.490 45.455 0.00 0.00 38.27 3.67
3882 3995 2.128535 TGGTAGGGTGAGTGAAAACCA 58.871 47.619 0.00 0.00 38.27 3.67
3883 3996 2.943036 TGGTAGGGTGAGTGAAAACC 57.057 50.000 0.00 0.00 35.59 3.27
3884 3997 4.496840 CGTTTTGGTAGGGTGAGTGAAAAC 60.497 45.833 0.00 0.00 0.00 2.43
3885 3998 3.628487 CGTTTTGGTAGGGTGAGTGAAAA 59.372 43.478 0.00 0.00 0.00 2.29
3886 3999 3.207778 CGTTTTGGTAGGGTGAGTGAAA 58.792 45.455 0.00 0.00 0.00 2.69
3887 4000 2.171027 ACGTTTTGGTAGGGTGAGTGAA 59.829 45.455 0.00 0.00 0.00 3.18
3888 4001 1.764134 ACGTTTTGGTAGGGTGAGTGA 59.236 47.619 0.00 0.00 0.00 3.41
3889 4002 2.249844 ACGTTTTGGTAGGGTGAGTG 57.750 50.000 0.00 0.00 0.00 3.51
3890 4003 2.092807 ACAACGTTTTGGTAGGGTGAGT 60.093 45.455 0.00 0.00 37.00 3.41
3891 4004 2.567985 ACAACGTTTTGGTAGGGTGAG 58.432 47.619 0.00 0.00 37.00 3.51
3892 4005 2.713863 ACAACGTTTTGGTAGGGTGA 57.286 45.000 0.00 0.00 37.00 4.02
3893 4006 3.440228 CAAACAACGTTTTGGTAGGGTG 58.560 45.455 0.00 0.00 37.00 4.61
3894 4007 3.786516 CAAACAACGTTTTGGTAGGGT 57.213 42.857 0.00 0.00 37.00 4.34
3901 4014 3.903054 GCAACAAACCAAACAACGTTTTG 59.097 39.130 0.00 1.34 38.83 2.44
3902 4015 3.058846 GGCAACAAACCAAACAACGTTTT 60.059 39.130 0.00 0.00 29.85 2.43
3903 4016 2.480802 GGCAACAAACCAAACAACGTTT 59.519 40.909 0.00 0.00 32.48 3.60
3904 4017 2.070028 GGCAACAAACCAAACAACGTT 58.930 42.857 0.00 0.00 0.00 3.99
3905 4018 1.715993 GGCAACAAACCAAACAACGT 58.284 45.000 0.00 0.00 0.00 3.99
3919 4032 0.391263 CGGAGGGAGTACTTGGCAAC 60.391 60.000 0.00 0.00 0.00 4.17
3920 4033 0.834687 ACGGAGGGAGTACTTGGCAA 60.835 55.000 0.00 0.00 0.00 4.52
3921 4034 0.834687 AACGGAGGGAGTACTTGGCA 60.835 55.000 0.00 0.00 0.00 4.92
3922 4035 0.323957 AAACGGAGGGAGTACTTGGC 59.676 55.000 0.00 0.00 0.00 4.52
3923 4036 2.853235 AAAACGGAGGGAGTACTTGG 57.147 50.000 0.00 0.00 0.00 3.61
3924 4037 6.812879 AAATAAAAACGGAGGGAGTACTTG 57.187 37.500 0.00 0.00 0.00 3.16
3925 4038 7.605309 CACTAAATAAAAACGGAGGGAGTACTT 59.395 37.037 0.00 0.00 0.00 2.24
3926 4039 7.101700 CACTAAATAAAAACGGAGGGAGTACT 58.898 38.462 0.00 0.00 0.00 2.73
3927 4040 6.875726 ACACTAAATAAAAACGGAGGGAGTAC 59.124 38.462 0.00 0.00 0.00 2.73
3928 4041 6.875195 CACACTAAATAAAAACGGAGGGAGTA 59.125 38.462 0.00 0.00 0.00 2.59
3929 4042 5.704053 CACACTAAATAAAAACGGAGGGAGT 59.296 40.000 0.00 0.00 0.00 3.85
3930 4043 5.391629 GCACACTAAATAAAAACGGAGGGAG 60.392 44.000 0.00 0.00 0.00 4.30
3931 4044 4.456566 GCACACTAAATAAAAACGGAGGGA 59.543 41.667 0.00 0.00 0.00 4.20
3932 4045 4.216687 TGCACACTAAATAAAAACGGAGGG 59.783 41.667 0.00 0.00 0.00 4.30
3933 4046 5.365403 TGCACACTAAATAAAAACGGAGG 57.635 39.130 0.00 0.00 0.00 4.30
3936 4049 9.445786 CCTAATATGCACACTAAATAAAAACGG 57.554 33.333 0.00 0.00 0.00 4.44
3937 4050 9.997482 ACCTAATATGCACACTAAATAAAAACG 57.003 29.630 0.00 0.00 0.00 3.60
3943 4056 9.674068 TGTCAAACCTAATATGCACACTAAATA 57.326 29.630 0.00 0.00 0.00 1.40
3944 4057 8.574251 TGTCAAACCTAATATGCACACTAAAT 57.426 30.769 0.00 0.00 0.00 1.40
3945 4058 7.880713 TCTGTCAAACCTAATATGCACACTAAA 59.119 33.333 0.00 0.00 0.00 1.85
3946 4059 7.390823 TCTGTCAAACCTAATATGCACACTAA 58.609 34.615 0.00 0.00 0.00 2.24
3947 4060 6.941857 TCTGTCAAACCTAATATGCACACTA 58.058 36.000 0.00 0.00 0.00 2.74
3948 4061 5.804639 TCTGTCAAACCTAATATGCACACT 58.195 37.500 0.00 0.00 0.00 3.55
3949 4062 6.149474 ACTTCTGTCAAACCTAATATGCACAC 59.851 38.462 0.00 0.00 0.00 3.82
3950 4063 6.237901 ACTTCTGTCAAACCTAATATGCACA 58.762 36.000 0.00 0.00 0.00 4.57
3951 4064 6.743575 ACTTCTGTCAAACCTAATATGCAC 57.256 37.500 0.00 0.00 0.00 4.57
3952 4065 6.985188 GACTTCTGTCAAACCTAATATGCA 57.015 37.500 0.00 0.00 42.48 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.