Multiple sequence alignment - TraesCS2A01G395000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G395000 chr2A 100.000 4599 0 0 3879 8477 646624922 646620324 0.000000e+00 8493.0
1 TraesCS2A01G395000 chr2A 100.000 3543 0 0 1 3543 646628800 646625258 0.000000e+00 6543.0
2 TraesCS2A01G395000 chr2B 90.899 1747 99 26 6073 7792 588725721 588724008 0.000000e+00 2290.0
3 TraesCS2A01G395000 chr2B 96.154 650 24 1 1 650 588731471 588730823 0.000000e+00 1061.0
4 TraesCS2A01G395000 chr2B 94.768 669 22 6 596 1252 588730827 588730160 0.000000e+00 1029.0
5 TraesCS2A01G395000 chr2B 90.189 581 22 11 4426 4998 588727090 588726537 0.000000e+00 725.0
6 TraesCS2A01G395000 chr2B 91.363 521 19 13 1246 1763 588730131 588729634 0.000000e+00 689.0
7 TraesCS2A01G395000 chr2B 87.567 563 40 15 3879 4434 588727701 588727162 7.220000e-175 625.0
8 TraesCS2A01G395000 chr2B 82.889 713 97 19 5372 6072 588726467 588725768 1.210000e-172 617.0
9 TraesCS2A01G395000 chr2B 90.187 428 36 6 3051 3477 588728644 588728222 3.460000e-153 553.0
10 TraesCS2A01G395000 chr2B 87.794 467 41 12 2470 2929 588729527 588729070 4.500000e-147 532.0
11 TraesCS2A01G395000 chr2B 95.455 110 4 1 2298 2406 588729623 588729514 3.150000e-39 174.0
12 TraesCS2A01G395000 chr2B 90.090 111 10 1 2929 3039 588729018 588728909 8.870000e-30 143.0
13 TraesCS2A01G395000 chr2B 96.000 50 2 0 7821 7870 13486332 13486381 1.960000e-11 82.4
14 TraesCS2A01G395000 chr2D 90.517 1761 97 18 6073 7815 500692803 500694511 0.000000e+00 2263.0
15 TraesCS2A01G395000 chr2D 96.872 1023 24 4 737 1753 500687563 500688583 0.000000e+00 1705.0
16 TraesCS2A01G395000 chr2D 96.311 759 16 5 1 750 500685896 500686651 0.000000e+00 1236.0
17 TraesCS2A01G395000 chr2D 94.737 589 27 3 4423 5007 500690698 500691286 0.000000e+00 913.0
18 TraesCS2A01G395000 chr2D 89.610 616 44 12 2927 3541 500689208 500689804 0.000000e+00 765.0
19 TraesCS2A01G395000 chr2D 88.057 561 43 12 3880 4434 500690086 500690628 1.990000e-180 643.0
20 TraesCS2A01G395000 chr2D 95.573 384 16 1 8094 8477 500695126 500695508 1.560000e-171 614.0
21 TraesCS2A01G395000 chr2D 82.483 725 88 28 5368 6072 500691348 500692053 4.380000e-167 599.0
22 TraesCS2A01G395000 chr2D 88.223 467 38 13 2470 2929 500688709 500689165 7.480000e-150 542.0
23 TraesCS2A01G395000 chr2D 91.845 233 17 1 7865 8095 500694508 500694740 2.950000e-84 324.0
24 TraesCS2A01G395000 chr3D 93.384 529 34 1 1762 2290 24569710 24569183 0.000000e+00 782.0
25 TraesCS2A01G395000 chr3D 90.000 60 4 2 7807 7865 51439507 51439565 9.120000e-10 76.8
26 TraesCS2A01G395000 chr3D 90.164 61 3 3 7820 7877 595760591 595760651 9.120000e-10 76.8
27 TraesCS2A01G395000 chr1D 92.096 544 40 3 1754 2297 466407132 466406592 0.000000e+00 763.0
28 TraesCS2A01G395000 chr1D 96.154 52 1 1 7820 7870 483382980 483382929 5.450000e-12 84.2
29 TraesCS2A01G395000 chr7D 92.351 536 40 1 1762 2297 475155397 475154863 0.000000e+00 761.0
30 TraesCS2A01G395000 chr7D 77.005 561 84 21 5059 5598 192138747 192139283 6.480000e-71 279.0
31 TraesCS2A01G395000 chr7D 86.170 94 11 2 5368 5460 570455911 570455819 5.410000e-17 100.0
32 TraesCS2A01G395000 chr3B 92.164 536 41 1 1762 2297 463484170 463483636 0.000000e+00 756.0
33 TraesCS2A01G395000 chr3B 92.164 536 40 1 1762 2297 778000939 778000406 0.000000e+00 756.0
34 TraesCS2A01G395000 chr3B 79.221 308 59 4 5173 5479 454613473 454613170 8.620000e-50 209.0
35 TraesCS2A01G395000 chr7B 91.978 536 42 1 1762 2297 380073314 380072780 0.000000e+00 750.0
36 TraesCS2A01G395000 chr7B 82.222 225 29 5 1466 1689 663852296 663852082 5.230000e-42 183.0
37 TraesCS2A01G395000 chr7B 94.340 53 1 2 7814 7865 480625677 480625626 7.050000e-11 80.5
38 TraesCS2A01G395000 chr6B 91.978 536 42 1 1762 2297 61212190 61211656 0.000000e+00 750.0
39 TraesCS2A01G395000 chr6B 80.892 157 13 3 5016 5155 42209528 42209372 3.240000e-19 108.0
40 TraesCS2A01G395000 chrUn 91.682 541 43 2 1757 2297 136395344 136394806 0.000000e+00 749.0
41 TraesCS2A01G395000 chr6A 91.376 545 46 1 1753 2297 591940295 591940838 0.000000e+00 745.0
42 TraesCS2A01G395000 chr6A 77.848 158 16 8 5016 5155 23935197 23935041 7.050000e-11 80.5
43 TraesCS2A01G395000 chr7A 78.103 580 91 24 5059 5618 201166652 201167215 1.360000e-87 335.0
44 TraesCS2A01G395000 chr7A 94.118 51 1 2 2411 2460 143162665 143162714 9.120000e-10 76.8
45 TraesCS2A01G395000 chr4B 77.847 483 75 19 5016 5471 614679553 614679076 3.900000e-68 270.0
46 TraesCS2A01G395000 chr4B 79.752 242 39 9 7227 7463 640536254 640536490 5.260000e-37 167.0
47 TraesCS2A01G395000 chr4B 74.862 362 67 16 5117 5473 585005571 585005229 8.870000e-30 143.0
48 TraesCS2A01G395000 chr4D 77.273 484 77 20 5016 5471 483861693 483861215 3.930000e-63 254.0
49 TraesCS2A01G395000 chr4D 80.083 241 40 7 7227 7463 498576153 498576389 1.130000e-38 172.0
50 TraesCS2A01G395000 chr4D 93.220 59 1 2 7820 7877 3951083 3951027 5.450000e-12 84.2
51 TraesCS2A01G395000 chr3A 75.839 447 69 21 5062 5481 512555856 512555422 3.120000e-44 191.0
52 TraesCS2A01G395000 chr3A 74.233 326 76 7 2546 2870 697378087 697378405 6.910000e-26 130.0
53 TraesCS2A01G395000 chr5A 78.423 241 44 7 7227 7463 679137583 679137819 5.300000e-32 150.0
54 TraesCS2A01G395000 chr5D 91.803 61 2 3 7824 7883 124915538 124915480 1.960000e-11 82.4
55 TraesCS2A01G395000 chr5D 97.917 48 0 1 7820 7866 386888264 386888217 1.960000e-11 82.4
56 TraesCS2A01G395000 chr1A 83.696 92 8 2 5086 5170 547501206 547501115 7.050000e-11 80.5
57 TraesCS2A01G395000 chr4A 94.231 52 1 2 7820 7869 538169007 538168956 2.540000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G395000 chr2A 646620324 646628800 8476 True 7518.000000 8493 100.000000 1 8477 2 chr2A.!!$R1 8476
1 TraesCS2A01G395000 chr2B 588724008 588731471 7463 True 767.090909 2290 90.668636 1 7792 11 chr2B.!!$R1 7791
2 TraesCS2A01G395000 chr2D 500685896 500695508 9612 False 960.400000 2263 91.422800 1 8477 10 chr2D.!!$F1 8476
3 TraesCS2A01G395000 chr3D 24569183 24569710 527 True 782.000000 782 93.384000 1762 2290 1 chr3D.!!$R1 528
4 TraesCS2A01G395000 chr1D 466406592 466407132 540 True 763.000000 763 92.096000 1754 2297 1 chr1D.!!$R1 543
5 TraesCS2A01G395000 chr7D 475154863 475155397 534 True 761.000000 761 92.351000 1762 2297 1 chr7D.!!$R1 535
6 TraesCS2A01G395000 chr7D 192138747 192139283 536 False 279.000000 279 77.005000 5059 5598 1 chr7D.!!$F1 539
7 TraesCS2A01G395000 chr3B 463483636 463484170 534 True 756.000000 756 92.164000 1762 2297 1 chr3B.!!$R2 535
8 TraesCS2A01G395000 chr3B 778000406 778000939 533 True 756.000000 756 92.164000 1762 2297 1 chr3B.!!$R3 535
9 TraesCS2A01G395000 chr7B 380072780 380073314 534 True 750.000000 750 91.978000 1762 2297 1 chr7B.!!$R1 535
10 TraesCS2A01G395000 chr6B 61211656 61212190 534 True 750.000000 750 91.978000 1762 2297 1 chr6B.!!$R2 535
11 TraesCS2A01G395000 chrUn 136394806 136395344 538 True 749.000000 749 91.682000 1757 2297 1 chrUn.!!$R1 540
12 TraesCS2A01G395000 chr6A 591940295 591940838 543 False 745.000000 745 91.376000 1753 2297 1 chr6A.!!$F1 544
13 TraesCS2A01G395000 chr7A 201166652 201167215 563 False 335.000000 335 78.103000 5059 5618 1 chr7A.!!$F2 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 186 0.606096 TAGGCTGACACGCTTAGCAA 59.394 50.0 4.70 0.00 39.15 3.91 F
1207 2209 0.036875 CTTCTTCCAGGTCCGCCTTT 59.963 55.0 0.00 0.00 44.18 3.11 F
1262 2299 0.804544 TCGCACTACGCATGTTAGCC 60.805 55.0 0.00 0.00 42.60 3.93 F
2448 3496 0.033503 TGATGTAGAGACTGGGGCGA 60.034 55.0 0.00 0.00 0.00 5.54 F
2776 3824 0.036164 CACCAAACCATCTCCGGACA 59.964 55.0 0.00 0.00 0.00 4.02 F
4006 5479 0.039618 AGGTAAACAGTGGCCCCATG 59.960 55.0 0.00 0.00 0.00 3.66 F
5052 6636 0.037046 CAGCCTGCAAATTTGGGTCC 60.037 55.0 19.47 3.64 0.00 4.46 F
5639 7247 0.029681 AGGCCTCCCCATATGTGTCT 60.030 55.0 0.00 0.00 35.39 3.41 F
5671 7282 0.036577 GATGAGGGATGCCGATCAGG 60.037 60.0 11.79 0.00 44.97 3.86 F
5743 7357 0.243907 AATCACTGACCACCGAGACG 59.756 55.0 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 3196 0.320334 TCAAGCATCGTCGAAAGGCA 60.320 50.0 16.04 0.0 33.27 4.75 R
2429 3477 0.033503 TCGCCCCAGTCTCTACATCA 60.034 55.0 0.00 0.0 0.00 3.07 R
2931 3980 0.667993 CGGTTGGCGCCATCAAATAT 59.332 50.0 33.25 0.0 0.00 1.28 R
3988 5461 0.251608 ACATGGGGCCACTGTTTACC 60.252 55.0 6.53 0.0 0.00 2.85 R
4481 6041 0.179004 ACCGCTCAAAACCATCCACA 60.179 50.0 0.00 0.0 0.00 4.17 R
5231 6834 0.037605 ACATCCGAAACCCGTCTGTC 60.038 55.0 0.00 0.0 36.31 3.51 R
6185 8558 0.038526 AAACGACAGTGCCTAGACCG 60.039 55.0 0.00 0.0 0.00 4.79 R
6734 9123 0.830648 TGACCGATGACCCCAGATTC 59.169 55.0 0.00 0.0 0.00 2.52 R
7193 9582 0.867746 TTGCATCAGCTCGTCACAAC 59.132 50.0 0.00 0.0 42.74 3.32 R
7717 10118 0.035458 AGCGTTTCCTCTTGGACCAG 59.965 55.0 0.00 0.0 43.06 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.863877 TGCTCAAATATTCAATATCACATGCAC 59.136 33.333 0.00 0.00 0.00 4.57
50 51 3.604582 TCAATATCACATGCACGGTTGA 58.395 40.909 0.00 0.00 0.00 3.18
66 68 3.799137 GTTGAAAACTCAACCGCGATA 57.201 42.857 8.23 0.00 45.32 2.92
133 135 3.190079 CTCCATCACTACATGTGTTCCG 58.810 50.000 9.11 0.00 46.27 4.30
184 186 0.606096 TAGGCTGACACGCTTAGCAA 59.394 50.000 4.70 0.00 39.15 3.91
472 476 3.669536 TGTTCATCGCTGATGTGGTAAA 58.330 40.909 15.04 3.27 40.55 2.01
499 503 1.442769 GTATCCATGCCAGTATGCCG 58.557 55.000 0.00 0.00 31.97 5.69
755 1745 7.572523 TGCATGACAAATAAAATCTCTAGGG 57.427 36.000 0.00 0.00 0.00 3.53
846 1838 4.069232 CGCTTGGTGGAGCTCCGA 62.069 66.667 27.43 14.07 40.52 4.55
1207 2209 0.036875 CTTCTTCCAGGTCCGCCTTT 59.963 55.000 0.00 0.00 44.18 3.11
1239 2241 2.561478 TGCCCTTGGTTCTGTTCTAC 57.439 50.000 0.00 0.00 0.00 2.59
1262 2299 0.804544 TCGCACTACGCATGTTAGCC 60.805 55.000 0.00 0.00 42.60 3.93
1267 2304 2.100197 ACTACGCATGTTAGCCTCAGA 58.900 47.619 0.00 0.00 0.00 3.27
1281 2318 2.680339 GCCTCAGATAAGCCTCAAACAC 59.320 50.000 0.00 0.00 0.00 3.32
1313 2350 6.052360 AGCTAGCTAGATTACTTTTCCAAGC 58.948 40.000 25.15 5.38 32.57 4.01
1921 2967 4.458829 ATCGCCCCTCCCTCGTCA 62.459 66.667 0.00 0.00 0.00 4.35
1937 2983 1.675310 TCAGAGCCGGGCAAACATG 60.675 57.895 23.09 11.68 0.00 3.21
1956 3002 4.521639 ACATGGTTGTAGTAGACAGTCGAA 59.478 41.667 0.00 0.00 39.88 3.71
1973 3019 2.313234 CGAAAAGTCGTCGTGCTAAGA 58.687 47.619 0.00 0.00 42.53 2.10
1998 3044 1.264749 TAGGACCAGCGCACCAGAAT 61.265 55.000 11.47 0.00 0.00 2.40
2007 3053 1.019278 CGCACCAGAATAGCAACCGT 61.019 55.000 0.00 0.00 0.00 4.83
2077 3123 3.181465 ACAGACGTGGATGAACAAAGACT 60.181 43.478 0.00 0.00 0.00 3.24
2078 3124 4.038763 ACAGACGTGGATGAACAAAGACTA 59.961 41.667 0.00 0.00 0.00 2.59
2136 3182 3.833645 CCACGAGATCCGCCGGAA 61.834 66.667 11.19 0.00 43.32 4.30
2150 3196 1.616159 CCGGAAACAAACCTCCACAT 58.384 50.000 0.00 0.00 0.00 3.21
2175 3221 4.466828 CTTTCGACGATGCTTGAAACATT 58.533 39.130 0.00 0.00 0.00 2.71
2183 3229 3.080300 TGCTTGAAACATTACCGGGAT 57.920 42.857 6.32 0.00 0.00 3.85
2184 3230 2.752354 TGCTTGAAACATTACCGGGATG 59.248 45.455 15.98 15.98 0.00 3.51
2221 3267 5.340027 GGGAGGACCTTATTCCATCTTCAAA 60.340 44.000 0.00 0.00 38.25 2.69
2232 3278 1.197721 CATCTTCAAAAAGTCGCCGCT 59.802 47.619 0.00 0.00 33.95 5.52
2306 3352 3.775261 AAAAATGGAGCAACATGGCTT 57.225 38.095 0.00 0.00 45.99 4.35
2320 3366 3.056891 ACATGGCTTATTTTGGACCAACG 60.057 43.478 6.36 0.00 33.30 4.10
2421 3469 3.393089 AAAAACATTTGGCCGTATGCA 57.607 38.095 14.86 0.00 43.89 3.96
2422 3470 3.608316 AAAACATTTGGCCGTATGCAT 57.392 38.095 14.86 3.79 43.89 3.96
2423 3471 3.608316 AAACATTTGGCCGTATGCATT 57.392 38.095 3.54 8.95 43.89 3.56
2424 3472 2.869233 ACATTTGGCCGTATGCATTC 57.131 45.000 3.54 0.00 43.89 2.67
2425 3473 1.065401 ACATTTGGCCGTATGCATTCG 59.935 47.619 17.71 17.71 43.89 3.34
2426 3474 1.065401 CATTTGGCCGTATGCATTCGT 59.935 47.619 21.87 2.10 43.89 3.85
2427 3475 1.169577 TTTGGCCGTATGCATTCGTT 58.830 45.000 21.87 0.00 43.89 3.85
2428 3476 0.730265 TTGGCCGTATGCATTCGTTC 59.270 50.000 21.87 14.40 43.89 3.95
2429 3477 0.107897 TGGCCGTATGCATTCGTTCT 60.108 50.000 21.87 0.00 43.89 3.01
2430 3478 0.304705 GGCCGTATGCATTCGTTCTG 59.695 55.000 21.87 9.56 43.89 3.02
2431 3479 1.286501 GCCGTATGCATTCGTTCTGA 58.713 50.000 21.87 0.00 40.77 3.27
2432 3480 1.867233 GCCGTATGCATTCGTTCTGAT 59.133 47.619 21.87 0.00 40.77 2.90
2433 3481 2.348872 GCCGTATGCATTCGTTCTGATG 60.349 50.000 21.87 7.96 40.77 3.07
2434 3482 2.866156 CCGTATGCATTCGTTCTGATGT 59.134 45.455 21.87 0.00 0.00 3.06
2435 3483 4.048504 CCGTATGCATTCGTTCTGATGTA 58.951 43.478 21.87 0.00 0.00 2.29
2436 3484 4.148871 CCGTATGCATTCGTTCTGATGTAG 59.851 45.833 21.87 1.70 0.00 2.74
2437 3485 4.976116 CGTATGCATTCGTTCTGATGTAGA 59.024 41.667 16.59 0.00 0.00 2.59
2438 3486 5.116225 CGTATGCATTCGTTCTGATGTAGAG 59.884 44.000 16.59 0.00 36.61 2.43
2439 3487 4.718940 TGCATTCGTTCTGATGTAGAGA 57.281 40.909 0.00 0.00 36.61 3.10
2440 3488 4.424626 TGCATTCGTTCTGATGTAGAGAC 58.575 43.478 0.00 0.00 36.61 3.36
2441 3489 4.158579 TGCATTCGTTCTGATGTAGAGACT 59.841 41.667 0.00 0.00 36.61 3.24
2442 3490 4.502282 GCATTCGTTCTGATGTAGAGACTG 59.498 45.833 0.00 0.00 36.61 3.51
2443 3491 4.703645 TTCGTTCTGATGTAGAGACTGG 57.296 45.455 0.00 0.00 36.61 4.00
2444 3492 3.017442 TCGTTCTGATGTAGAGACTGGG 58.983 50.000 0.00 0.00 36.61 4.45
2445 3493 2.099921 CGTTCTGATGTAGAGACTGGGG 59.900 54.545 0.00 0.00 36.61 4.96
2446 3494 1.781786 TCTGATGTAGAGACTGGGGC 58.218 55.000 0.00 0.00 0.00 5.80
2447 3495 0.387202 CTGATGTAGAGACTGGGGCG 59.613 60.000 0.00 0.00 0.00 6.13
2448 3496 0.033503 TGATGTAGAGACTGGGGCGA 60.034 55.000 0.00 0.00 0.00 5.54
2449 3497 1.112113 GATGTAGAGACTGGGGCGAA 58.888 55.000 0.00 0.00 0.00 4.70
2450 3498 0.824759 ATGTAGAGACTGGGGCGAAC 59.175 55.000 0.00 0.00 0.00 3.95
2451 3499 1.255667 TGTAGAGACTGGGGCGAACC 61.256 60.000 0.00 0.00 39.11 3.62
2521 3569 4.896080 TCAAAACGTTCCGTCAGTTTTAC 58.104 39.130 0.00 0.00 43.55 2.01
2524 3572 4.461992 AACGTTCCGTCAGTTTTACATG 57.538 40.909 0.00 0.00 39.99 3.21
2534 3582 6.964934 CCGTCAGTTTTACATGTAATAAAGCC 59.035 38.462 18.69 6.05 0.00 4.35
2537 3585 7.753580 GTCAGTTTTACATGTAATAAAGCCCAC 59.246 37.037 18.69 4.83 0.00 4.61
2539 3587 8.250332 CAGTTTTACATGTAATAAAGCCCACAT 58.750 33.333 18.69 0.00 31.91 3.21
2555 3603 2.612604 CACATGGTCGAACCGATACAA 58.387 47.619 0.00 0.00 42.58 2.41
2557 3605 2.997986 ACATGGTCGAACCGATACAAAC 59.002 45.455 0.00 0.00 42.58 2.93
2558 3606 3.259064 CATGGTCGAACCGATACAAACT 58.741 45.455 0.00 0.00 42.58 2.66
2559 3607 4.082081 ACATGGTCGAACCGATACAAACTA 60.082 41.667 0.00 0.00 42.58 2.24
2560 3608 4.100707 TGGTCGAACCGATACAAACTAG 57.899 45.455 0.00 0.00 42.58 2.57
2574 3622 9.731819 CGATACAAACTAGCTAGTGAGAAAATA 57.268 33.333 26.70 12.47 36.50 1.40
2595 3643 4.799564 ACTCAAACAAGCAGGTCAAAAA 57.200 36.364 0.00 0.00 0.00 1.94
2596 3644 5.343307 ACTCAAACAAGCAGGTCAAAAAT 57.657 34.783 0.00 0.00 0.00 1.82
2658 3706 2.553086 ACTAAACACCGAGCGTGAAAA 58.447 42.857 0.00 0.00 46.20 2.29
2659 3707 2.286025 ACTAAACACCGAGCGTGAAAAC 59.714 45.455 0.00 0.00 46.20 2.43
2660 3708 1.088306 AAACACCGAGCGTGAAAACA 58.912 45.000 0.00 0.00 46.20 2.83
2717 3765 1.065345 TCAAACAGGACCGAAACCACA 60.065 47.619 0.00 0.00 0.00 4.17
2729 3777 3.067461 CCGAAACCACATCACCTTGAAAA 59.933 43.478 0.00 0.00 0.00 2.29
2730 3778 4.440802 CCGAAACCACATCACCTTGAAAAA 60.441 41.667 0.00 0.00 0.00 1.94
2747 3795 0.813210 AAAAACACCGGACGCCGTAA 60.813 50.000 9.46 0.00 46.80 3.18
2775 3823 0.036306 ACACCAAACCATCTCCGGAC 59.964 55.000 0.00 0.00 0.00 4.79
2776 3824 0.036164 CACCAAACCATCTCCGGACA 59.964 55.000 0.00 0.00 0.00 4.02
2779 3827 0.392998 CAAACCATCTCCGGACAGGG 60.393 60.000 9.04 9.04 41.52 4.45
2781 3829 1.265454 AACCATCTCCGGACAGGGTC 61.265 60.000 16.70 0.00 41.52 4.46
2783 3831 1.264749 CCATCTCCGGACAGGGTCAA 61.265 60.000 0.00 0.00 41.52 3.18
2784 3832 0.833287 CATCTCCGGACAGGGTCAAT 59.167 55.000 0.00 0.00 41.52 2.57
2790 3838 2.106683 GGACAGGGTCAATTCGCCG 61.107 63.158 0.00 0.00 33.68 6.46
2840 3888 1.078567 GTGCTCCTCCTGCCAGAAG 60.079 63.158 0.00 0.00 0.00 2.85
2852 3900 3.370315 CCTGCCAGAAGATAGCAAGAACT 60.370 47.826 0.00 0.00 35.79 3.01
2859 3907 6.162079 CAGAAGATAGCAAGAACTGAGAACA 58.838 40.000 0.00 0.00 0.00 3.18
2865 3913 4.775236 AGCAAGAACTGAGAACAAAGACT 58.225 39.130 0.00 0.00 0.00 3.24
2869 3917 4.872664 AGAACTGAGAACAAAGACTACGG 58.127 43.478 0.00 0.00 0.00 4.02
2894 3942 5.007724 GGTCACCCGAATCAACATCTATTTC 59.992 44.000 0.00 0.00 0.00 2.17
2896 3944 4.881273 CACCCGAATCAACATCTATTTCCA 59.119 41.667 0.00 0.00 0.00 3.53
2897 3945 5.008019 CACCCGAATCAACATCTATTTCCAG 59.992 44.000 0.00 0.00 0.00 3.86
2899 3947 4.576053 CCGAATCAACATCTATTTCCAGCA 59.424 41.667 0.00 0.00 0.00 4.41
2906 3954 5.316158 ACATCTATTTCCAGCAAGCCTAT 57.684 39.130 0.00 0.00 0.00 2.57
2931 3980 8.334263 TGAAATATCAGACACAAGTAAATGCA 57.666 30.769 0.00 0.00 0.00 3.96
2932 3981 8.959548 TGAAATATCAGACACAAGTAAATGCAT 58.040 29.630 0.00 0.00 0.00 3.96
2938 3987 8.334263 TCAGACACAAGTAAATGCATATTTGA 57.666 30.769 10.64 0.00 37.12 2.69
2939 3988 8.959548 TCAGACACAAGTAAATGCATATTTGAT 58.040 29.630 10.64 0.70 37.12 2.57
2940 3989 9.016623 CAGACACAAGTAAATGCATATTTGATG 57.983 33.333 10.64 8.02 37.12 3.07
2941 3990 8.192774 AGACACAAGTAAATGCATATTTGATGG 58.807 33.333 10.64 4.09 37.12 3.51
2942 3991 6.757947 ACACAAGTAAATGCATATTTGATGGC 59.242 34.615 10.64 0.00 37.12 4.40
3015 4116 2.069273 CGGTCTTCGAGATGCAACTTT 58.931 47.619 0.00 0.00 42.43 2.66
3117 4470 7.728847 TCTATCCATGATTTTTCATGTACCG 57.271 36.000 13.30 0.94 44.29 4.02
3118 4471 5.772825 ATCCATGATTTTTCATGTACCGG 57.227 39.130 13.30 0.00 44.29 5.28
3161 4514 9.941664 CAATATTGCCTACATGTAAAAAGAGAG 57.058 33.333 7.06 0.00 0.00 3.20
3203 4556 5.299531 AGTTTTAGAAAGTTTGACTGGAGGC 59.700 40.000 0.00 0.00 0.00 4.70
3215 4568 3.135712 TGACTGGAGGCTTGTAGAAAACA 59.864 43.478 0.00 0.00 35.88 2.83
3239 4592 7.786114 CAAAACTTACATATTTTGTGCACCAG 58.214 34.615 15.69 0.00 39.75 4.00
3242 4595 5.415701 ACTTACATATTTTGTGCACCAGAGG 59.584 40.000 15.69 0.00 39.48 3.69
3270 4623 6.323203 ACCTTTTTCTGAACATGTGAGATG 57.677 37.500 0.00 0.00 0.00 2.90
3281 4634 6.041865 TGAACATGTGAGATGGGTGAAAAATT 59.958 34.615 0.00 0.00 0.00 1.82
3294 4647 8.581253 TGGGTGAAAAATTTATTTGTTTTGGT 57.419 26.923 0.00 0.00 0.00 3.67
3318 4671 9.313118 GGTTCATTTTCTGTGAAAGTGTTTTAT 57.687 29.630 12.76 0.00 37.34 1.40
3381 4735 4.021544 ACTCTCTCATCTCAGGTTCACAAC 60.022 45.833 0.00 0.00 0.00 3.32
3490 4844 9.403110 CTTCCTTTGAATAATGCAGCAATATAC 57.597 33.333 0.00 0.00 0.00 1.47
3492 4846 6.803320 CCTTTGAATAATGCAGCAATATACGG 59.197 38.462 0.00 0.00 0.00 4.02
3493 4847 7.308529 CCTTTGAATAATGCAGCAATATACGGA 60.309 37.037 0.00 0.00 0.00 4.69
3494 4848 7.503521 TTGAATAATGCAGCAATATACGGAA 57.496 32.000 0.00 0.00 0.00 4.30
3495 4849 6.898041 TGAATAATGCAGCAATATACGGAAC 58.102 36.000 0.00 0.00 0.00 3.62
3908 5381 8.914011 GGGCTATTAGTTTGATTTATGAGGTTT 58.086 33.333 0.00 0.00 0.00 3.27
4006 5479 0.039618 AGGTAAACAGTGGCCCCATG 59.960 55.000 0.00 0.00 0.00 3.66
4014 5487 4.054359 ACAGTGGCCCCATGTTATTAAA 57.946 40.909 0.00 0.00 0.00 1.52
4015 5488 4.421131 ACAGTGGCCCCATGTTATTAAAA 58.579 39.130 0.00 0.00 0.00 1.52
4016 5489 4.841246 ACAGTGGCCCCATGTTATTAAAAA 59.159 37.500 0.00 0.00 0.00 1.94
4054 5527 6.665992 TCATAGGTCCACCACTGATTATAC 57.334 41.667 0.00 0.00 38.89 1.47
4069 5542 7.010091 CACTGATTATACAGCGTAACATGACAA 59.990 37.037 0.00 0.00 41.06 3.18
4115 5588 7.581213 ACCATGTCAAGAAAAACTTATGACA 57.419 32.000 9.07 9.07 44.83 3.58
4135 5608 7.719778 TGACATGATTCTATGTTGCACTATC 57.280 36.000 0.00 0.00 41.15 2.08
4136 5609 7.274447 TGACATGATTCTATGTTGCACTATCA 58.726 34.615 0.00 0.00 41.15 2.15
4138 5611 7.049754 ACATGATTCTATGTTGCACTATCACA 58.950 34.615 0.00 0.00 38.05 3.58
4148 5621 3.911868 TGCACTATCACAACAAATTGGC 58.088 40.909 0.00 0.00 40.42 4.52
4151 5624 4.487948 CACTATCACAACAAATTGGCAGG 58.512 43.478 0.00 0.00 40.42 4.85
4220 5694 9.463902 ACTATATTTACTAGTACGCATCATCCT 57.536 33.333 0.91 0.00 0.00 3.24
4262 5736 4.907582 TGAACGCGTATGTACAGATAATCG 59.092 41.667 14.46 0.00 0.00 3.34
4265 5739 5.696822 ACGCGTATGTACAGATAATCGATT 58.303 37.500 11.67 16.15 0.00 3.34
4308 5782 5.465390 GGCAAAAGACAGGAAATAACCAAAC 59.535 40.000 0.00 0.00 0.00 2.93
4355 5829 1.586154 GCGTGGCAGCTGTGGTTAAT 61.586 55.000 16.64 0.00 0.00 1.40
4356 5830 0.881118 CGTGGCAGCTGTGGTTAATT 59.119 50.000 16.64 0.00 0.00 1.40
4359 5833 3.426159 CGTGGCAGCTGTGGTTAATTAAG 60.426 47.826 16.64 0.00 0.00 1.85
4362 5836 3.761752 GGCAGCTGTGGTTAATTAAGGAA 59.238 43.478 16.64 0.00 0.00 3.36
4364 5838 5.402398 GCAGCTGTGGTTAATTAAGGAAAG 58.598 41.667 16.64 0.00 0.00 2.62
4366 5840 6.381801 CAGCTGTGGTTAATTAAGGAAAGTG 58.618 40.000 5.25 0.00 0.00 3.16
4367 5841 6.016276 CAGCTGTGGTTAATTAAGGAAAGTGT 60.016 38.462 5.25 0.00 0.00 3.55
4369 5843 7.888546 AGCTGTGGTTAATTAAGGAAAGTGTAT 59.111 33.333 0.00 0.00 0.00 2.29
4370 5844 9.169592 GCTGTGGTTAATTAAGGAAAGTGTATA 57.830 33.333 0.00 0.00 0.00 1.47
4398 5878 6.348050 GCAGAGAATATTGCAACCAGCTATAC 60.348 42.308 0.00 0.00 42.28 1.47
4411 5891 3.118629 CCAGCTATACTGCAGGTCAAAGA 60.119 47.826 19.93 0.00 45.78 2.52
4422 5902 4.041567 TGCAGGTCAAAGATCTCCAACTTA 59.958 41.667 0.00 0.00 0.00 2.24
4471 6031 4.566759 TGCGTCTAAAACAGCTCATCATAC 59.433 41.667 0.00 0.00 0.00 2.39
4472 6032 4.317418 GCGTCTAAAACAGCTCATCATACG 60.317 45.833 0.00 0.00 0.00 3.06
4473 6033 4.317418 CGTCTAAAACAGCTCATCATACGC 60.317 45.833 0.00 0.00 0.00 4.42
4474 6034 4.806247 GTCTAAAACAGCTCATCATACGCT 59.194 41.667 0.00 0.00 0.00 5.07
4475 6035 5.292101 GTCTAAAACAGCTCATCATACGCTT 59.708 40.000 0.00 0.00 0.00 4.68
4476 6036 5.874810 TCTAAAACAGCTCATCATACGCTTT 59.125 36.000 0.00 0.00 0.00 3.51
4477 6037 4.346734 AAACAGCTCATCATACGCTTTG 57.653 40.909 0.00 0.00 0.00 2.77
4478 6038 1.667724 ACAGCTCATCATACGCTTTGC 59.332 47.619 0.00 0.00 0.00 3.68
4479 6039 1.938577 CAGCTCATCATACGCTTTGCT 59.061 47.619 0.00 0.00 0.00 3.91
4480 6040 3.126073 CAGCTCATCATACGCTTTGCTA 58.874 45.455 0.00 0.00 0.00 3.49
4481 6041 3.744942 CAGCTCATCATACGCTTTGCTAT 59.255 43.478 0.00 0.00 0.00 2.97
4482 6042 3.744942 AGCTCATCATACGCTTTGCTATG 59.255 43.478 0.00 0.00 0.00 2.23
4483 6043 3.496130 GCTCATCATACGCTTTGCTATGT 59.504 43.478 0.00 0.00 0.00 2.29
4484 6044 4.610007 GCTCATCATACGCTTTGCTATGTG 60.610 45.833 0.00 0.00 0.00 3.21
4485 6045 3.809279 TCATCATACGCTTTGCTATGTGG 59.191 43.478 0.28 0.00 0.00 4.17
4486 6046 3.535280 TCATACGCTTTGCTATGTGGA 57.465 42.857 0.28 0.00 0.00 4.02
4487 6047 4.071961 TCATACGCTTTGCTATGTGGAT 57.928 40.909 0.28 0.00 0.00 3.41
4506 6083 1.007387 GGTTTTGAGCGGTGGCAAG 60.007 57.895 0.00 0.00 43.41 4.01
4612 6196 6.861065 TGTGATACTTTTTCCTGAAGACAC 57.139 37.500 0.00 0.00 32.79 3.67
4619 6203 2.103153 TTCCTGAAGACACACTCCCT 57.897 50.000 0.00 0.00 0.00 4.20
4648 6232 9.585099 CTAGCAGCCAATCAAATAAAAACAATA 57.415 29.630 0.00 0.00 0.00 1.90
4693 6277 3.365064 CGTGTGTCGAAGAAGCTAGAAGA 60.365 47.826 0.00 0.00 39.69 2.87
4757 6341 2.206576 AGAACAGGCCTGAATGAACC 57.793 50.000 39.19 17.38 0.00 3.62
4788 6372 9.267084 GCACCCAAAACAATTTTAGAAATTAGA 57.733 29.630 0.00 0.00 0.00 2.10
4822 6406 7.806409 TTCTGTGACCATTATTCCATATGTG 57.194 36.000 1.24 0.00 0.00 3.21
4963 6547 8.663209 AGATATGTGGATAGCAACTCTAGAAT 57.337 34.615 0.00 0.00 0.00 2.40
5001 6585 4.406069 CAACTTCCAGATTGCACATTACG 58.594 43.478 0.00 0.00 0.00 3.18
5002 6586 3.937814 ACTTCCAGATTGCACATTACGA 58.062 40.909 0.00 0.00 0.00 3.43
5003 6587 3.935203 ACTTCCAGATTGCACATTACGAG 59.065 43.478 0.00 0.00 0.00 4.18
5004 6588 2.279741 TCCAGATTGCACATTACGAGC 58.720 47.619 0.00 0.00 0.00 5.03
5005 6589 2.009051 CCAGATTGCACATTACGAGCA 58.991 47.619 0.00 0.00 39.65 4.26
5006 6590 2.615447 CCAGATTGCACATTACGAGCAT 59.385 45.455 0.00 0.00 41.10 3.79
5007 6591 3.547413 CCAGATTGCACATTACGAGCATG 60.547 47.826 0.00 0.00 41.10 4.06
5008 6592 3.064408 CAGATTGCACATTACGAGCATGT 59.936 43.478 0.00 0.00 41.10 3.21
5029 6613 8.940961 GCATGTGCATAGTAAGAGCATCTACAG 61.941 44.444 0.00 0.00 43.34 2.74
5035 6619 4.024698 GAGCATCTACAGCCGCAG 57.975 61.111 0.00 0.00 0.00 5.18
5047 6631 2.385091 GCCGCAGCCTGCAAATTTG 61.385 57.895 18.21 14.03 45.36 2.32
5048 6632 1.738830 CCGCAGCCTGCAAATTTGG 60.739 57.895 18.21 4.49 45.36 3.28
5049 6633 1.738830 CGCAGCCTGCAAATTTGGG 60.739 57.895 18.21 13.67 45.36 4.12
5050 6634 1.372307 GCAGCCTGCAAATTTGGGT 59.628 52.632 19.47 6.14 44.26 4.51
5052 6636 0.037046 CAGCCTGCAAATTTGGGTCC 60.037 55.000 19.47 3.64 0.00 4.46
5053 6637 0.178924 AGCCTGCAAATTTGGGTCCT 60.179 50.000 19.47 4.47 0.00 3.85
5054 6638 0.686789 GCCTGCAAATTTGGGTCCTT 59.313 50.000 19.47 0.00 0.00 3.36
5055 6639 1.899142 GCCTGCAAATTTGGGTCCTTA 59.101 47.619 19.47 0.00 0.00 2.69
5056 6640 2.301583 GCCTGCAAATTTGGGTCCTTAA 59.698 45.455 19.47 0.00 0.00 1.85
5057 6641 3.244387 GCCTGCAAATTTGGGTCCTTAAA 60.244 43.478 19.47 0.00 0.00 1.52
5060 6644 3.385111 TGCAAATTTGGGTCCTTAAACGT 59.615 39.130 19.47 0.00 0.00 3.99
5075 6659 1.389609 AACGTCCGTGGACAGTGACT 61.390 55.000 18.54 1.48 44.77 3.41
5078 6662 1.531423 GTCCGTGGACAGTGACTAGA 58.469 55.000 14.10 0.00 44.02 2.43
5083 6667 2.180276 GTGGACAGTGACTAGATGGGT 58.820 52.381 0.00 0.00 0.00 4.51
5114 6698 2.103263 TGCCATTTACAACCACAAACCC 59.897 45.455 0.00 0.00 0.00 4.11
5152 6742 1.915350 GCAAACACATGCACATCGATG 59.085 47.619 23.68 23.68 45.70 3.84
5165 6755 5.104374 GCACATCGATGATTTTGGATGTTT 58.896 37.500 31.33 1.24 45.15 2.83
5166 6756 6.127786 TGCACATCGATGATTTTGGATGTTTA 60.128 34.615 31.33 5.47 45.15 2.01
5168 6771 7.475015 CACATCGATGATTTTGGATGTTTAGT 58.525 34.615 31.33 0.00 45.15 2.24
5181 6784 1.349688 TGTTTAGTCGGGGCTGTTGAT 59.650 47.619 0.00 0.00 0.00 2.57
5182 6785 2.224670 TGTTTAGTCGGGGCTGTTGATT 60.225 45.455 0.00 0.00 0.00 2.57
5184 6787 3.985019 TTAGTCGGGGCTGTTGATTAA 57.015 42.857 0.00 0.00 0.00 1.40
5187 6790 2.156098 GTCGGGGCTGTTGATTAAACA 58.844 47.619 0.00 0.00 46.66 2.83
5188 6791 2.095415 GTCGGGGCTGTTGATTAAACAC 60.095 50.000 0.00 0.00 43.96 3.32
5189 6792 1.201414 CGGGGCTGTTGATTAAACACC 59.799 52.381 0.00 0.00 43.96 4.16
5191 6794 2.630580 GGGGCTGTTGATTAAACACCAA 59.369 45.455 7.43 0.00 43.96 3.67
5193 6796 4.262851 GGGGCTGTTGATTAAACACCAAAT 60.263 41.667 7.43 0.00 43.96 2.32
5195 6798 6.351796 GGGGCTGTTGATTAAACACCAAATAT 60.352 38.462 7.43 0.00 43.96 1.28
5196 6799 7.147811 GGGGCTGTTGATTAAACACCAAATATA 60.148 37.037 7.43 0.00 43.96 0.86
5221 6824 8.969260 ATGCTCATACTTCAGATTTTCACATA 57.031 30.769 0.00 0.00 0.00 2.29
5222 6825 8.969260 TGCTCATACTTCAGATTTTCACATAT 57.031 30.769 0.00 0.00 0.00 1.78
5223 6826 8.833493 TGCTCATACTTCAGATTTTCACATATG 58.167 33.333 0.00 0.00 0.00 1.78
5268 6871 3.305177 TTTAGTCCCACCTCGCCGC 62.305 63.158 0.00 0.00 0.00 6.53
5285 6888 1.954146 GCGTGACAAGCGAGTGGAA 60.954 57.895 0.00 0.00 0.00 3.53
5288 6891 1.512926 GTGACAAGCGAGTGGAATGT 58.487 50.000 0.00 0.00 0.00 2.71
5289 6892 1.195448 GTGACAAGCGAGTGGAATGTG 59.805 52.381 0.00 0.00 0.00 3.21
5299 6902 4.495844 GCGAGTGGAATGTGTTAAATAGCC 60.496 45.833 0.00 0.00 0.00 3.93
5339 6942 1.210478 AGCTTCGGGCATCATTACACT 59.790 47.619 4.35 0.00 44.79 3.55
5352 6955 7.067494 GGCATCATTACACTCTTTGTTAAGGAT 59.933 37.037 0.00 0.00 39.91 3.24
5468 7076 6.692681 CACGACTCTTTTTGAATCACAATGTT 59.307 34.615 0.00 0.00 38.36 2.71
5481 7089 1.405821 ACAATGTTTCGAACGGGCAAA 59.594 42.857 0.00 0.00 0.00 3.68
5492 7100 1.597854 CGGGCAAAGTGCACTCTGA 60.598 57.895 24.26 0.00 46.59 3.27
5522 7130 1.213013 CGGCAGAGCTGTAGACGTT 59.787 57.895 0.00 0.00 0.00 3.99
5526 7134 1.202200 GCAGAGCTGTAGACGTTCGAT 60.202 52.381 0.00 0.00 0.00 3.59
5529 7137 0.811915 AGCTGTAGACGTTCGATGCT 59.188 50.000 0.00 0.00 0.00 3.79
5553 7161 7.004555 TGAGAAGCAATTGTAAAGAGGTAGA 57.995 36.000 7.40 0.00 0.00 2.59
5563 7171 4.232122 TGTAAAGAGGTAGATCAGAGGGGA 59.768 45.833 0.00 0.00 0.00 4.81
5567 7175 4.488770 AGAGGTAGATCAGAGGGGAATTC 58.511 47.826 0.00 0.00 0.00 2.17
5568 7176 3.580895 GAGGTAGATCAGAGGGGAATTCC 59.419 52.174 16.74 16.74 0.00 3.01
5601 7209 4.083862 GGGTCGGACTGTCAGCCC 62.084 72.222 18.58 18.58 0.00 5.19
5634 7242 1.377994 GCTCAGGCCTCCCCATATG 59.622 63.158 0.00 0.00 35.39 1.78
5636 7244 0.399454 CTCAGGCCTCCCCATATGTG 59.601 60.000 0.00 0.00 35.39 3.21
5639 7247 0.029681 AGGCCTCCCCATATGTGTCT 60.030 55.000 0.00 0.00 35.39 3.41
5640 7248 0.846693 GGCCTCCCCATATGTGTCTT 59.153 55.000 0.00 0.00 0.00 3.01
5646 7254 6.408206 GGCCTCCCCATATGTGTCTTATATAC 60.408 46.154 0.00 0.00 0.00 1.47
5648 7256 6.183360 CCTCCCCATATGTGTCTTATATACGG 60.183 46.154 1.24 0.00 0.00 4.02
5671 7282 0.036577 GATGAGGGATGCCGATCAGG 60.037 60.000 11.79 0.00 44.97 3.86
5699 7310 3.800506 CGTTTGAGTCCTGTTTAAGACGT 59.199 43.478 0.00 0.00 38.08 4.34
5701 7312 4.931661 TTGAGTCCTGTTTAAGACGTCT 57.068 40.909 13.58 13.58 38.08 4.18
5739 7353 4.545208 TTTATCAATCACTGACCACCGA 57.455 40.909 0.00 0.00 36.69 4.69
5741 7355 1.627864 TCAATCACTGACCACCGAGA 58.372 50.000 0.00 0.00 0.00 4.04
5743 7357 0.243907 AATCACTGACCACCGAGACG 59.756 55.000 0.00 0.00 0.00 4.18
5744 7358 2.214181 ATCACTGACCACCGAGACGC 62.214 60.000 0.00 0.00 0.00 5.19
5745 7359 3.681835 ACTGACCACCGAGACGCC 61.682 66.667 0.00 0.00 0.00 5.68
5746 7360 4.436998 CTGACCACCGAGACGCCC 62.437 72.222 0.00 0.00 0.00 6.13
5774 7388 0.963355 TACAATGGGTTTGAGGCGCC 60.963 55.000 21.89 21.89 38.76 6.53
5775 7389 1.978617 CAATGGGTTTGAGGCGCCT 60.979 57.895 33.48 33.48 37.53 5.52
5779 7393 3.056328 GGTTTGAGGCGCCTGACC 61.056 66.667 38.41 31.66 0.00 4.02
5792 7406 1.001158 GCCTGACCGTAGATGCTCTAC 60.001 57.143 11.25 11.25 44.41 2.59
5809 7431 3.609853 TCTACATCCACATTGGCAAGAC 58.390 45.455 5.96 0.00 37.47 3.01
5900 7522 2.496070 AGGCACGAACACTAGCTATCAA 59.504 45.455 0.00 0.00 0.00 2.57
5902 7524 3.871594 GGCACGAACACTAGCTATCAAAT 59.128 43.478 0.00 0.00 0.00 2.32
6005 7628 0.899717 TGACCAGAAAATGCCAGGCC 60.900 55.000 9.64 0.00 0.00 5.19
6111 8483 2.683362 GTCCAATTCCGTCCAATTCTCC 59.317 50.000 0.00 0.00 0.00 3.71
6163 8536 2.368105 GCACTATGCGATCGAGCGG 61.368 63.158 25.73 10.42 40.67 5.52
6179 8552 2.390599 CGGAATGAGCACGTGGTGG 61.391 63.158 27.15 3.19 33.64 4.61
6182 8555 1.577328 GAATGAGCACGTGGTGGTGG 61.577 60.000 27.15 0.00 44.55 4.61
6269 8642 1.134491 CGGATAAACTCCACACCCCTC 60.134 57.143 0.00 0.00 45.24 4.30
6270 8643 1.212195 GGATAAACTCCACACCCCTCC 59.788 57.143 0.00 0.00 44.26 4.30
6271 8644 2.197465 GATAAACTCCACACCCCTCCT 58.803 52.381 0.00 0.00 0.00 3.69
6341 8715 1.134580 CCATGCTGCTACTGTGCTACT 60.135 52.381 0.00 0.00 0.00 2.57
6342 8716 2.101415 CCATGCTGCTACTGTGCTACTA 59.899 50.000 0.00 0.00 0.00 1.82
6343 8717 2.941453 TGCTGCTACTGTGCTACTAC 57.059 50.000 0.00 0.00 0.00 2.73
6351 8725 4.083217 GCTACTGTGCTACTACATATCGCT 60.083 45.833 0.00 0.00 0.00 4.93
6355 8729 6.207213 ACTGTGCTACTACATATCGCTTAAC 58.793 40.000 0.00 0.00 0.00 2.01
6361 8735 5.772825 ACTACATATCGCTTAACCGGTTA 57.227 39.130 23.17 23.17 0.00 2.85
6454 8828 0.800300 CGCACGTGCAACAAACCTTT 60.800 50.000 37.03 0.00 42.21 3.11
6460 8834 2.159448 CGTGCAACAAACCTTTGAGACA 60.159 45.455 4.77 0.00 40.55 3.41
6528 8902 3.491447 GGTTTGCTGATATGCATGTTCCC 60.491 47.826 10.16 1.57 42.96 3.97
6568 8942 5.501156 GGTCAGGGGGATATATGAATGTTC 58.499 45.833 0.00 0.00 0.00 3.18
6572 8947 5.643777 CAGGGGGATATATGAATGTTCGTTC 59.356 44.000 0.00 0.00 0.00 3.95
6573 8948 5.309543 AGGGGGATATATGAATGTTCGTTCA 59.690 40.000 9.42 9.42 41.88 3.18
6614 8989 7.819415 TGACCAAGTGAAGACAGATAAACATAG 59.181 37.037 0.00 0.00 0.00 2.23
6734 9123 1.207593 CCCAACTTCGCTTGCTTCG 59.792 57.895 0.00 0.00 0.00 3.79
6742 9131 0.740868 TCGCTTGCTTCGAATCTGGG 60.741 55.000 0.00 1.14 32.53 4.45
6743 9132 1.709147 CGCTTGCTTCGAATCTGGGG 61.709 60.000 0.00 0.00 0.00 4.96
6744 9133 0.678048 GCTTGCTTCGAATCTGGGGT 60.678 55.000 0.00 0.00 0.00 4.95
6745 9134 1.373570 CTTGCTTCGAATCTGGGGTC 58.626 55.000 0.00 0.00 0.00 4.46
6746 9135 0.690192 TTGCTTCGAATCTGGGGTCA 59.310 50.000 0.00 0.00 0.00 4.02
6747 9136 0.911769 TGCTTCGAATCTGGGGTCAT 59.088 50.000 0.00 0.00 0.00 3.06
6748 9137 1.134401 TGCTTCGAATCTGGGGTCATC 60.134 52.381 0.00 0.00 0.00 2.92
6749 9138 1.858091 CTTCGAATCTGGGGTCATCG 58.142 55.000 0.00 0.00 34.98 3.84
6798 9187 3.009916 ACCTCATGCATGACCTCTTTTCT 59.990 43.478 25.42 0.00 32.50 2.52
7060 9449 4.767255 GTCTCCGGCCTGCAGGTG 62.767 72.222 32.81 24.45 37.57 4.00
7135 9524 1.547372 GTCAACCTAGGCGACCAGTTA 59.453 52.381 17.50 0.00 0.00 2.24
7149 9538 4.393990 CGACCAGTTACAGGTAAAATTCCC 59.606 45.833 0.00 0.00 40.09 3.97
7150 9539 5.318630 GACCAGTTACAGGTAAAATTCCCA 58.681 41.667 0.00 0.00 40.09 4.37
7159 9548 2.758423 GGTAAAATTCCCACGAGCCATT 59.242 45.455 0.00 0.00 0.00 3.16
7160 9549 3.428862 GGTAAAATTCCCACGAGCCATTG 60.429 47.826 0.00 0.00 0.00 2.82
7161 9550 1.185315 AAATTCCCACGAGCCATTGG 58.815 50.000 0.00 0.00 0.00 3.16
7182 9571 9.561069 CATTGGCAACTACTCCTAGTAATTTAT 57.439 33.333 0.00 0.00 32.46 1.40
7190 9579 9.643735 ACTACTCCTAGTAATTTATGCAGTAGT 57.356 33.333 0.00 0.00 39.32 2.73
7193 9582 8.634444 ACTCCTAGTAATTTATGCAGTAGTGAG 58.366 37.037 0.42 0.00 0.00 3.51
7486 9879 0.388520 TCAGAAGTGATCCGTGTGCG 60.389 55.000 0.00 0.00 37.95 5.34
7507 9900 0.905357 AAGCTTGCCTCATCTACGGT 59.095 50.000 0.00 0.00 0.00 4.83
7549 9942 4.390603 ACGACGCAGCATTACTCAAATAAA 59.609 37.500 0.00 0.00 0.00 1.40
7602 9995 6.887368 AGTTGTTTGAACTTGTTTTTGCTTC 58.113 32.000 0.00 0.00 0.00 3.86
7663 10056 9.442047 GTATTCCCTATATACTAGTACGTGTGT 57.558 37.037 4.31 0.00 0.00 3.72
7665 10058 6.830912 TCCCTATATACTAGTACGTGTGTGT 58.169 40.000 4.31 0.00 0.00 3.72
7667 10060 6.484643 CCCTATATACTAGTACGTGTGTGTGT 59.515 42.308 4.31 0.00 0.00 3.72
7669 10062 6.748333 ATATACTAGTACGTGTGTGTGTGT 57.252 37.500 4.31 0.00 0.00 3.72
7671 10064 2.424601 ACTAGTACGTGTGTGTGTGTGT 59.575 45.455 0.00 0.00 0.00 3.72
7729 10133 1.348064 TGGTACACTGGTCCAAGAGG 58.652 55.000 0.00 0.00 0.00 3.69
7756 10169 4.491942 CGCTGTGTAATAAATTTGCTGTCG 59.508 41.667 0.00 0.00 0.00 4.35
7769 10182 1.380403 GCTGTCGAGGAGCTGAGCTA 61.380 60.000 7.08 0.00 39.88 3.32
7792 10205 8.079809 GCTAACTAAACCAAAATGTTAGAGCAA 58.920 33.333 13.27 0.00 41.21 3.91
7793 10206 9.394477 CTAACTAAACCAAAATGTTAGAGCAAC 57.606 33.333 0.00 0.00 41.21 4.17
7794 10207 6.745116 ACTAAACCAAAATGTTAGAGCAACC 58.255 36.000 0.00 0.00 36.20 3.77
7799 10212 6.924111 ACCAAAATGTTAGAGCAACCATAAG 58.076 36.000 0.00 0.00 36.20 1.73
7813 10226 5.828328 GCAACCATAAGAAGCCCTATTAAGT 59.172 40.000 0.00 0.00 0.00 2.24
7814 10227 6.996282 GCAACCATAAGAAGCCCTATTAAGTA 59.004 38.462 0.00 0.00 0.00 2.24
7815 10228 7.041303 GCAACCATAAGAAGCCCTATTAAGTAC 60.041 40.741 0.00 0.00 0.00 2.73
7816 10229 7.932683 ACCATAAGAAGCCCTATTAAGTACT 57.067 36.000 0.00 0.00 0.00 2.73
7817 10230 7.964624 ACCATAAGAAGCCCTATTAAGTACTC 58.035 38.462 0.00 0.00 0.00 2.59
7818 10231 7.016366 ACCATAAGAAGCCCTATTAAGTACTCC 59.984 40.741 0.00 0.00 0.00 3.85
7819 10232 5.890752 AAGAAGCCCTATTAAGTACTCCC 57.109 43.478 0.00 0.00 0.00 4.30
7820 10233 5.159139 AGAAGCCCTATTAAGTACTCCCT 57.841 43.478 0.00 0.00 0.00 4.20
7821 10234 6.290870 AGAAGCCCTATTAAGTACTCCCTA 57.709 41.667 0.00 0.00 0.00 3.53
7822 10235 6.076653 AGAAGCCCTATTAAGTACTCCCTAC 58.923 44.000 0.00 0.00 0.00 3.18
7823 10236 5.683172 AGCCCTATTAAGTACTCCCTACT 57.317 43.478 0.00 0.00 37.28 2.57
7824 10237 6.040662 AGCCCTATTAAGTACTCCCTACTT 57.959 41.667 0.00 0.00 45.93 2.24
7825 10238 7.171822 AGCCCTATTAAGTACTCCCTACTTA 57.828 40.000 0.00 0.00 42.91 2.24
7826 10239 7.240167 AGCCCTATTAAGTACTCCCTACTTAG 58.760 42.308 0.00 0.00 45.00 2.18
7827 10240 7.009550 GCCCTATTAAGTACTCCCTACTTAGT 58.990 42.308 0.00 0.00 45.00 2.24
7828 10241 7.039853 GCCCTATTAAGTACTCCCTACTTAGTG 60.040 44.444 0.00 0.00 45.00 2.74
7829 10242 8.223330 CCCTATTAAGTACTCCCTACTTAGTGA 58.777 40.741 0.00 0.00 45.00 3.41
7830 10243 9.810870 CCTATTAAGTACTCCCTACTTAGTGAT 57.189 37.037 0.00 0.00 45.00 3.06
7836 10249 9.939424 AAGTACTCCCTACTTAGTGATCTAAAT 57.061 33.333 0.00 0.00 42.91 1.40
7837 10250 9.357161 AGTACTCCCTACTTAGTGATCTAAATG 57.643 37.037 0.00 0.00 35.98 2.32
7838 10251 7.056844 ACTCCCTACTTAGTGATCTAAATGC 57.943 40.000 0.00 0.00 35.98 3.56
7839 10252 6.841755 ACTCCCTACTTAGTGATCTAAATGCT 59.158 38.462 0.00 0.00 35.98 3.79
7840 10253 7.014808 ACTCCCTACTTAGTGATCTAAATGCTC 59.985 40.741 0.00 0.00 35.98 4.26
7841 10254 7.069986 TCCCTACTTAGTGATCTAAATGCTCT 58.930 38.462 0.00 0.00 35.98 4.09
7842 10255 7.565398 TCCCTACTTAGTGATCTAAATGCTCTT 59.435 37.037 0.00 0.00 35.98 2.85
7843 10256 8.861086 CCCTACTTAGTGATCTAAATGCTCTTA 58.139 37.037 0.00 0.00 35.98 2.10
7861 10274 9.920946 ATGCTCTTATATTTCTTTACAAAGGGA 57.079 29.630 2.04 0.00 36.67 4.20
7862 10275 9.396022 TGCTCTTATATTTCTTTACAAAGGGAG 57.604 33.333 2.04 0.00 36.67 4.30
7863 10276 9.397280 GCTCTTATATTTCTTTACAAAGGGAGT 57.603 33.333 2.04 0.00 36.67 3.85
7872 10285 6.496743 TCTTTACAAAGGGAGTAGTAGGCTA 58.503 40.000 2.04 0.00 36.67 3.93
7875 10288 8.843308 TTTACAAAGGGAGTAGTAGGCTATAA 57.157 34.615 0.00 0.00 0.00 0.98
7886 10299 7.727181 AGTAGTAGGCTATAATGTGTTTCCTG 58.273 38.462 0.00 0.00 0.00 3.86
7907 10320 5.773680 CCTGCCATCATCAGAATCCTATTTT 59.226 40.000 0.00 0.00 33.54 1.82
7910 10323 6.263842 TGCCATCATCAGAATCCTATTTTGAC 59.736 38.462 0.00 0.00 0.00 3.18
7938 10351 7.726291 TGAGAAGGTAAGAGAAGAGAAAAGAGA 59.274 37.037 0.00 0.00 0.00 3.10
7939 10352 8.122472 AGAAGGTAAGAGAAGAGAAAAGAGAG 57.878 38.462 0.00 0.00 0.00 3.20
7948 10361 6.172630 AGAAGAGAAAAGAGAGAATGAAGCC 58.827 40.000 0.00 0.00 0.00 4.35
7949 10362 4.842574 AGAGAAAAGAGAGAATGAAGCCC 58.157 43.478 0.00 0.00 0.00 5.19
7956 10369 1.648467 GAGAATGAAGCCCGCACACC 61.648 60.000 0.00 0.00 0.00 4.16
7964 10377 4.302509 CCCGCACACCGTGTACCA 62.303 66.667 3.25 0.00 35.75 3.25
7965 10378 3.039588 CCGCACACCGTGTACCAC 61.040 66.667 3.25 0.00 35.75 4.16
7984 10397 3.829601 CCACCCAGCCTAAACACATAAAA 59.170 43.478 0.00 0.00 0.00 1.52
8009 10422 4.894784 AGAGAAAAATAACCTCAGTGCGA 58.105 39.130 0.00 0.00 0.00 5.10
8010 10423 5.305585 AGAGAAAAATAACCTCAGTGCGAA 58.694 37.500 0.00 0.00 0.00 4.70
8011 10424 5.179555 AGAGAAAAATAACCTCAGTGCGAAC 59.820 40.000 0.00 0.00 0.00 3.95
8013 10426 2.450609 AATAACCTCAGTGCGAACGT 57.549 45.000 0.00 0.00 0.00 3.99
8014 10427 2.450609 ATAACCTCAGTGCGAACGTT 57.549 45.000 0.00 0.00 0.00 3.99
8015 10428 3.581024 ATAACCTCAGTGCGAACGTTA 57.419 42.857 0.00 0.00 0.00 3.18
8016 10429 1.494824 AACCTCAGTGCGAACGTTAC 58.505 50.000 0.00 0.00 0.00 2.50
8098 10900 1.878102 GCTCGTGTGAAGGGTGAACAT 60.878 52.381 0.00 0.00 0.00 2.71
8112 10914 3.886505 GGTGAACATTAGTCACAACCCAA 59.113 43.478 6.86 0.00 36.21 4.12
8140 10942 8.491045 TTTTTCCCTAAATCTTGGTTCTGAAT 57.509 30.769 0.00 0.00 0.00 2.57
8157 10959 6.416631 TCTGAATCTAGAAGCATATGCACT 57.583 37.500 28.62 25.66 45.16 4.40
8167 10969 7.997773 AGAAGCATATGCACTCATGATTTAT 57.002 32.000 28.62 6.19 45.16 1.40
8207 11009 6.469782 AACATGACCAACTTTTGATTCACT 57.530 33.333 0.00 0.00 0.00 3.41
8257 11059 8.183536 GCCATGAAAGTTTCACAAAAGAAAAAT 58.816 29.630 20.26 0.00 43.48 1.82
8280 11082 8.667076 AATAAAATCAGAAATTGCATAAGGGC 57.333 30.769 0.00 0.00 0.00 5.19
8287 11089 4.718276 AGAAATTGCATAAGGGCAGGAAAT 59.282 37.500 0.00 0.00 45.88 2.17
8352 11154 8.364894 GTGAACCAGGGTTTGAAAATAGTTTAT 58.635 33.333 4.99 0.00 38.60 1.40
8456 11258 4.740154 ATAGGCCCATTAGTAATTGCCA 57.260 40.909 24.85 15.84 38.23 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.365403 TTCAAATATCGCGGTTGAGTTTT 57.635 34.783 6.13 0.00 33.10 2.43
62 64 4.207224 ACGCGAGTGAGATTTCAAATATCG 59.793 41.667 15.93 6.91 46.97 2.92
158 160 1.360551 CGTGTCAGCCTAGGATCCG 59.639 63.158 14.75 1.47 0.00 4.18
184 186 3.259064 ACACGCGTGATTATTTGTAGCT 58.741 40.909 42.94 15.22 0.00 3.32
460 464 1.401552 CCCATGCGTTTACCACATCAG 59.598 52.381 0.00 0.00 0.00 2.90
480 484 1.442769 CGGCATACTGGCATGGATAC 58.557 55.000 0.00 0.00 43.94 2.24
499 503 5.674820 GCAACTCAAAGGACTAGCTTATTGC 60.675 44.000 0.00 0.00 43.29 3.56
755 1745 3.713826 TCCAATCAACCAGGTTACCTC 57.286 47.619 3.89 0.00 0.00 3.85
922 1919 2.307768 GGGGATCGCCATATATCGAGA 58.692 52.381 23.21 0.00 38.17 4.04
950 1952 1.054978 GGCGGTAGAAGAAGGGGGAT 61.055 60.000 0.00 0.00 0.00 3.85
1044 2046 3.751246 CGCGTGTAACCCTCCGGA 61.751 66.667 2.93 2.93 0.00 5.14
1207 2209 2.974692 AAGGGCATGCACGTGGTGAA 62.975 55.000 21.36 0.00 35.23 3.18
1262 2299 2.932614 CCGTGTTTGAGGCTTATCTGAG 59.067 50.000 0.00 0.00 0.00 3.35
1313 2350 1.871772 CTGAAGCAAGCCGTGAAGG 59.128 57.895 0.00 0.00 44.97 3.46
1398 2436 1.117749 TCGATCAGAGAGGGCATGGG 61.118 60.000 0.00 0.00 0.00 4.00
1428 2466 4.021280 TGTTATACTTATGGCCGGCGAATA 60.021 41.667 22.54 17.90 0.00 1.75
1713 2751 4.398319 ACTTGAACGTTTCAGGATTGGAT 58.602 39.130 0.46 0.00 41.38 3.41
1799 2845 8.418597 TCTAGTGTTCTTTGTACTACCTTGAT 57.581 34.615 0.00 0.00 0.00 2.57
1860 2906 2.862530 GCTTCAGTGCTTGTAGTCGTCA 60.863 50.000 0.00 0.00 0.00 4.35
1921 2967 2.361610 CCATGTTTGCCCGGCTCT 60.362 61.111 11.61 0.00 0.00 4.09
1937 2983 5.527033 ACTTTTCGACTGTCTACTACAACC 58.473 41.667 6.21 0.00 37.74 3.77
1956 3002 1.336609 GGGTCTTAGCACGACGACTTT 60.337 52.381 0.00 0.00 32.24 2.66
1973 3019 3.480133 GCGCTGGTCCTATGGGGT 61.480 66.667 0.00 0.00 36.25 4.95
2007 3053 0.461548 ATGCTTCTCTTCATCGGCGA 59.538 50.000 13.87 13.87 0.00 5.54
2063 3109 5.983540 ACTGGATCTAGTCTTTGTTCATCC 58.016 41.667 5.80 0.00 0.00 3.51
2066 3112 4.082190 CCGACTGGATCTAGTCTTTGTTCA 60.082 45.833 29.63 0.00 43.82 3.18
2136 3182 2.086610 AAGGCATGTGGAGGTTTGTT 57.913 45.000 0.00 0.00 0.00 2.83
2150 3196 0.320334 TCAAGCATCGTCGAAAGGCA 60.320 50.000 16.04 0.00 33.27 4.75
2194 3240 0.043637 TGGAATAAGGTCCTCCCCGT 59.956 55.000 0.00 0.00 38.62 5.28
2232 3278 0.610174 ATGCTCAAGAAGACGAGGCA 59.390 50.000 0.00 0.00 0.00 4.75
2291 3337 3.055963 CCAAAATAAGCCATGTTGCTCCA 60.056 43.478 0.00 0.00 41.80 3.86
2306 3352 4.113354 GCACAAAACGTTGGTCCAAAATA 58.887 39.130 5.69 0.00 39.22 1.40
2372 3420 6.293790 CGGATGACTATGTGCAATCAATTGAT 60.294 38.462 15.36 15.36 40.14 2.57
2408 3456 1.131504 GAACGAATGCATACGGCCAAA 59.868 47.619 2.24 0.00 43.89 3.28
2409 3457 0.730265 GAACGAATGCATACGGCCAA 59.270 50.000 2.24 0.00 43.89 4.52
2411 3459 0.304705 CAGAACGAATGCATACGGCC 59.695 55.000 0.00 0.00 43.89 6.13
2412 3460 1.286501 TCAGAACGAATGCATACGGC 58.713 50.000 0.00 0.00 45.13 5.68
2413 3461 2.866156 ACATCAGAACGAATGCATACGG 59.134 45.455 0.00 0.00 0.00 4.02
2414 3462 4.976116 TCTACATCAGAACGAATGCATACG 59.024 41.667 0.00 0.00 0.00 3.06
2415 3463 6.143118 GTCTCTACATCAGAACGAATGCATAC 59.857 42.308 0.00 0.00 31.12 2.39
2416 3464 6.039829 AGTCTCTACATCAGAACGAATGCATA 59.960 38.462 0.00 0.00 31.12 3.14
2417 3465 5.046529 GTCTCTACATCAGAACGAATGCAT 58.953 41.667 0.00 0.00 31.12 3.96
2418 3466 4.158579 AGTCTCTACATCAGAACGAATGCA 59.841 41.667 0.00 0.00 31.12 3.96
2419 3467 4.502282 CAGTCTCTACATCAGAACGAATGC 59.498 45.833 0.00 0.00 31.12 3.56
2420 3468 5.039984 CCAGTCTCTACATCAGAACGAATG 58.960 45.833 0.00 0.00 31.12 2.67
2421 3469 4.098654 CCCAGTCTCTACATCAGAACGAAT 59.901 45.833 0.00 0.00 31.12 3.34
2422 3470 3.444034 CCCAGTCTCTACATCAGAACGAA 59.556 47.826 0.00 0.00 31.12 3.85
2423 3471 3.017442 CCCAGTCTCTACATCAGAACGA 58.983 50.000 0.00 0.00 31.12 3.85
2424 3472 2.099921 CCCCAGTCTCTACATCAGAACG 59.900 54.545 0.00 0.00 31.12 3.95
2425 3473 2.159028 GCCCCAGTCTCTACATCAGAAC 60.159 54.545 0.00 0.00 31.12 3.01
2426 3474 2.111384 GCCCCAGTCTCTACATCAGAA 58.889 52.381 0.00 0.00 31.12 3.02
2427 3475 1.781786 GCCCCAGTCTCTACATCAGA 58.218 55.000 0.00 0.00 0.00 3.27
2428 3476 0.387202 CGCCCCAGTCTCTACATCAG 59.613 60.000 0.00 0.00 0.00 2.90
2429 3477 0.033503 TCGCCCCAGTCTCTACATCA 60.034 55.000 0.00 0.00 0.00 3.07
2430 3478 1.112113 TTCGCCCCAGTCTCTACATC 58.888 55.000 0.00 0.00 0.00 3.06
2431 3479 0.824759 GTTCGCCCCAGTCTCTACAT 59.175 55.000 0.00 0.00 0.00 2.29
2432 3480 1.255667 GGTTCGCCCCAGTCTCTACA 61.256 60.000 0.00 0.00 0.00 2.74
2433 3481 1.516423 GGTTCGCCCCAGTCTCTAC 59.484 63.158 0.00 0.00 0.00 2.59
2434 3482 4.029472 GGTTCGCCCCAGTCTCTA 57.971 61.111 0.00 0.00 0.00 2.43
2479 3527 9.750125 GTTTTGAGAAATACAAGAGGATGTTTT 57.250 29.630 0.00 0.00 34.75 2.43
2480 3528 8.076178 CGTTTTGAGAAATACAAGAGGATGTTT 58.924 33.333 0.00 0.00 34.75 2.83
2481 3529 7.228706 ACGTTTTGAGAAATACAAGAGGATGTT 59.771 33.333 0.00 0.00 34.75 2.71
2482 3530 6.710744 ACGTTTTGAGAAATACAAGAGGATGT 59.289 34.615 0.00 0.00 37.32 3.06
2521 3569 4.261155 CGACCATGTGGGCTTTATTACATG 60.261 45.833 2.94 8.74 46.06 3.21
2524 3572 3.537580 TCGACCATGTGGGCTTTATTAC 58.462 45.455 2.94 0.00 42.58 1.89
2534 3582 1.134936 TGTATCGGTTCGACCATGTGG 60.135 52.381 0.00 0.00 39.18 4.17
2537 3585 3.259064 AGTTTGTATCGGTTCGACCATG 58.741 45.455 5.15 0.00 39.18 3.66
2539 3587 3.674138 GCTAGTTTGTATCGGTTCGACCA 60.674 47.826 5.15 0.00 39.18 4.02
2555 3603 9.425577 GTTTGAGTATTTTCTCACTAGCTAGTT 57.574 33.333 23.94 10.23 43.01 2.24
2557 3605 8.988064 TGTTTGAGTATTTTCTCACTAGCTAG 57.012 34.615 19.44 19.44 43.01 3.42
2558 3606 9.424319 CTTGTTTGAGTATTTTCTCACTAGCTA 57.576 33.333 0.00 0.00 43.01 3.32
2559 3607 7.095017 GCTTGTTTGAGTATTTTCTCACTAGCT 60.095 37.037 0.00 0.00 43.01 3.32
2560 3608 7.018235 GCTTGTTTGAGTATTTTCTCACTAGC 58.982 38.462 0.00 0.00 43.01 3.42
2574 3622 4.799564 TTTTTGACCTGCTTGTTTGAGT 57.200 36.364 0.00 0.00 0.00 3.41
2595 3643 8.303876 ACTTGCTCGGTTGTCATTTTATTTTAT 58.696 29.630 0.00 0.00 0.00 1.40
2596 3644 7.653647 ACTTGCTCGGTTGTCATTTTATTTTA 58.346 30.769 0.00 0.00 0.00 1.52
2608 3656 2.319136 TGTGTTACTTGCTCGGTTGT 57.681 45.000 0.00 0.00 0.00 3.32
2658 3706 3.840991 TGTTAGGTGTAGTGTCTCCTGT 58.159 45.455 0.00 0.00 33.97 4.00
2659 3707 4.523173 TCTTGTTAGGTGTAGTGTCTCCTG 59.477 45.833 0.00 0.00 33.97 3.86
2660 3708 4.737578 TCTTGTTAGGTGTAGTGTCTCCT 58.262 43.478 0.00 0.00 35.77 3.69
2741 3789 2.152830 TGGTGTGTTTGGTATTACGGC 58.847 47.619 0.00 0.00 0.00 5.68
2747 3795 4.479158 AGATGGTTTGGTGTGTTTGGTAT 58.521 39.130 0.00 0.00 0.00 2.73
2775 3823 2.398554 CCACGGCGAATTGACCCTG 61.399 63.158 16.62 0.00 0.00 4.45
2776 3824 2.046314 CCACGGCGAATTGACCCT 60.046 61.111 16.62 0.00 0.00 4.34
2779 3827 1.359459 GGTCTCCACGGCGAATTGAC 61.359 60.000 16.62 15.58 0.00 3.18
2781 3829 2.452813 CGGTCTCCACGGCGAATTG 61.453 63.158 16.62 0.23 0.00 2.32
2783 3831 3.352338 GACGGTCTCCACGGCGAAT 62.352 63.158 16.62 0.00 35.23 3.34
2784 3832 4.047059 GACGGTCTCCACGGCGAA 62.047 66.667 16.62 0.00 35.23 4.70
2790 3838 3.450115 CGAGGGGACGGTCTCCAC 61.450 72.222 28.04 20.92 40.36 4.02
2830 3878 2.941720 GTTCTTGCTATCTTCTGGCAGG 59.058 50.000 15.73 0.00 42.83 4.85
2840 3888 6.648725 AGTCTTTGTTCTCAGTTCTTGCTATC 59.351 38.462 0.00 0.00 0.00 2.08
2852 3900 2.298163 GACCCCGTAGTCTTTGTTCTCA 59.702 50.000 0.00 0.00 33.79 3.27
2877 3925 5.739752 TGCTGGAAATAGATGTTGATTCG 57.260 39.130 0.00 0.00 0.00 3.34
2878 3926 5.975939 GCTTGCTGGAAATAGATGTTGATTC 59.024 40.000 0.00 0.00 0.00 2.52
2894 3942 5.180868 GTCTGATATTTCATAGGCTTGCTGG 59.819 44.000 0.00 0.00 0.00 4.85
2896 3944 5.762218 GTGTCTGATATTTCATAGGCTTGCT 59.238 40.000 0.00 0.00 0.00 3.91
2897 3945 5.528690 TGTGTCTGATATTTCATAGGCTTGC 59.471 40.000 0.00 0.00 0.00 4.01
2899 3947 7.341805 ACTTGTGTCTGATATTTCATAGGCTT 58.658 34.615 0.00 0.00 0.00 4.35
2906 3954 8.334263 TGCATTTACTTGTGTCTGATATTTCA 57.666 30.769 0.00 0.00 0.00 2.69
2929 3978 1.490621 GTTGGCGCCATCAAATATGC 58.509 50.000 33.25 8.22 0.00 3.14
2930 3979 1.600164 CGGTTGGCGCCATCAAATATG 60.600 52.381 33.25 10.60 0.00 1.78
2931 3980 0.667993 CGGTTGGCGCCATCAAATAT 59.332 50.000 33.25 0.00 0.00 1.28
2932 3981 1.999071 GCGGTTGGCGCCATCAAATA 61.999 55.000 33.25 11.89 0.00 1.40
2933 3982 2.884367 CGGTTGGCGCCATCAAAT 59.116 55.556 33.25 0.00 0.00 2.32
2934 3983 4.049640 GCGGTTGGCGCCATCAAA 62.050 61.111 33.25 13.29 0.00 2.69
3073 4426 9.705471 GGATAGATTCGTCTACATAAGTATTCG 57.295 37.037 0.00 0.00 0.00 3.34
3184 4537 4.141482 ACAAGCCTCCAGTCAAACTTTCTA 60.141 41.667 0.00 0.00 0.00 2.10
3186 4539 2.952310 ACAAGCCTCCAGTCAAACTTTC 59.048 45.455 0.00 0.00 0.00 2.62
3188 4541 2.736670 ACAAGCCTCCAGTCAAACTT 57.263 45.000 0.00 0.00 0.00 2.66
3189 4542 2.972713 TCTACAAGCCTCCAGTCAAACT 59.027 45.455 0.00 0.00 0.00 2.66
3198 4551 5.515797 AGTTTTGTTTTCTACAAGCCTCC 57.484 39.130 0.00 0.00 46.81 4.30
3215 4568 7.721402 TCTGGTGCACAAAATATGTAAGTTTT 58.279 30.769 20.43 0.00 41.46 2.43
3239 4592 6.434340 ACATGTTCAGAAAAAGGTATTCCCTC 59.566 38.462 0.00 0.00 45.47 4.30
3242 4595 7.174946 TCTCACATGTTCAGAAAAAGGTATTCC 59.825 37.037 0.00 0.00 0.00 3.01
3270 4623 9.509855 GAACCAAAACAAATAAATTTTTCACCC 57.490 29.630 0.00 0.00 0.00 4.61
3281 4634 9.658799 TCACAGAAAATGAACCAAAACAAATAA 57.341 25.926 0.00 0.00 0.00 1.40
3292 4645 7.595311 AAAACACTTTCACAGAAAATGAACC 57.405 32.000 7.79 0.00 35.82 3.62
3371 4725 1.150536 ATGTGGGCGTTGTGAACCT 59.849 52.632 0.00 0.00 0.00 3.50
3448 4802 9.887406 TTCAAAGGAAGTATCAAATTTCGTAAC 57.113 29.630 0.00 0.00 0.00 2.50
3479 4833 2.033151 GGAACGTTCCGTATATTGCTGC 60.033 50.000 30.33 4.16 39.99 5.25
3937 5410 9.553064 TGGAATACATTGTTACAATTGCTTTTT 57.447 25.926 7.97 0.00 0.00 1.94
3942 5415 9.801873 ATAACTGGAATACATTGTTACAATTGC 57.198 29.630 7.97 1.02 0.00 3.56
3988 5461 0.251608 ACATGGGGCCACTGTTTACC 60.252 55.000 6.53 0.00 0.00 2.85
4016 5489 9.574516 GTGGACCTATGATCCTAATAACATTTT 57.425 33.333 0.00 0.00 37.13 1.82
4017 5490 8.164070 GGTGGACCTATGATCCTAATAACATTT 58.836 37.037 0.00 0.00 37.13 2.32
4018 5491 7.294720 TGGTGGACCTATGATCCTAATAACATT 59.705 37.037 0.00 0.00 37.13 2.71
4019 5492 6.792473 TGGTGGACCTATGATCCTAATAACAT 59.208 38.462 0.00 0.00 37.13 2.71
4020 5493 6.042781 GTGGTGGACCTATGATCCTAATAACA 59.957 42.308 0.00 0.00 37.13 2.41
4021 5494 6.270231 AGTGGTGGACCTATGATCCTAATAAC 59.730 42.308 0.00 0.00 37.13 1.89
4022 5495 6.270000 CAGTGGTGGACCTATGATCCTAATAA 59.730 42.308 0.00 0.00 37.13 1.40
4023 5496 5.780282 CAGTGGTGGACCTATGATCCTAATA 59.220 44.000 0.00 0.00 37.13 0.98
4024 5497 4.594920 CAGTGGTGGACCTATGATCCTAAT 59.405 45.833 0.00 0.00 37.13 1.73
4025 5498 3.967326 CAGTGGTGGACCTATGATCCTAA 59.033 47.826 0.00 0.00 37.13 2.69
4026 5499 3.206639 TCAGTGGTGGACCTATGATCCTA 59.793 47.826 0.00 0.00 37.13 2.94
4027 5500 2.023015 TCAGTGGTGGACCTATGATCCT 60.023 50.000 0.00 0.00 37.13 3.24
4028 5501 2.398588 TCAGTGGTGGACCTATGATCC 58.601 52.381 0.00 0.00 36.82 3.36
4054 5527 4.863152 TGATCATTGTCATGTTACGCTG 57.137 40.909 0.00 0.00 0.00 5.18
4110 5583 7.935210 TGATAGTGCAACATAGAATCATGTCAT 59.065 33.333 0.00 0.00 41.43 3.06
4111 5584 7.225341 GTGATAGTGCAACATAGAATCATGTCA 59.775 37.037 0.00 0.00 41.43 3.58
4115 5588 7.553760 TGTTGTGATAGTGCAACATAGAATCAT 59.446 33.333 6.07 0.00 46.58 2.45
4135 5608 3.007182 AGAATCCCTGCCAATTTGTTGTG 59.993 43.478 0.00 0.00 0.00 3.33
4136 5609 3.242011 AGAATCCCTGCCAATTTGTTGT 58.758 40.909 0.00 0.00 0.00 3.32
4138 5611 4.980339 AAAGAATCCCTGCCAATTTGTT 57.020 36.364 0.00 0.00 0.00 2.83
4262 5736 6.719370 TGCCCCAACTATAATTATGTCCAATC 59.281 38.462 8.28 0.00 0.00 2.67
4265 5739 5.654901 TGCCCCAACTATAATTATGTCCA 57.345 39.130 8.28 0.00 0.00 4.02
4327 5801 3.357079 CTGCCACGCCTCACCAAC 61.357 66.667 0.00 0.00 0.00 3.77
4355 5829 7.342769 TCTCTGCGATATACACTTTCCTTAA 57.657 36.000 0.00 0.00 0.00 1.85
4356 5830 6.954487 TCTCTGCGATATACACTTTCCTTA 57.046 37.500 0.00 0.00 0.00 2.69
4359 5833 8.651588 CAATATTCTCTGCGATATACACTTTCC 58.348 37.037 0.00 0.00 0.00 3.13
4362 5836 7.154656 TGCAATATTCTCTGCGATATACACTT 58.845 34.615 0.00 0.00 41.63 3.16
4364 5838 6.951256 TGCAATATTCTCTGCGATATACAC 57.049 37.500 0.00 0.00 41.63 2.90
4366 5840 6.368791 TGGTTGCAATATTCTCTGCGATATAC 59.631 38.462 0.59 0.00 41.63 1.47
4367 5841 6.463360 TGGTTGCAATATTCTCTGCGATATA 58.537 36.000 0.59 0.00 41.63 0.86
4369 5843 4.702831 TGGTTGCAATATTCTCTGCGATA 58.297 39.130 0.59 0.00 41.63 2.92
4370 5844 3.544684 TGGTTGCAATATTCTCTGCGAT 58.455 40.909 0.59 0.00 41.63 4.58
4398 5878 2.746362 GTTGGAGATCTTTGACCTGCAG 59.254 50.000 6.78 6.78 30.27 4.41
4422 5902 7.127955 ACCACCTCTTGATACCTCTCAAAATAT 59.872 37.037 0.00 0.00 34.86 1.28
4471 6031 1.382522 ACCATCCACATAGCAAAGCG 58.617 50.000 0.00 0.00 0.00 4.68
4472 6032 3.874392 AAACCATCCACATAGCAAAGC 57.126 42.857 0.00 0.00 0.00 3.51
4473 6033 5.389859 TCAAAACCATCCACATAGCAAAG 57.610 39.130 0.00 0.00 0.00 2.77
4474 6034 4.321899 GCTCAAAACCATCCACATAGCAAA 60.322 41.667 0.00 0.00 0.00 3.68
4475 6035 3.193267 GCTCAAAACCATCCACATAGCAA 59.807 43.478 0.00 0.00 0.00 3.91
4476 6036 2.754552 GCTCAAAACCATCCACATAGCA 59.245 45.455 0.00 0.00 0.00 3.49
4477 6037 2.223340 CGCTCAAAACCATCCACATAGC 60.223 50.000 0.00 0.00 0.00 2.97
4478 6038 2.355756 CCGCTCAAAACCATCCACATAG 59.644 50.000 0.00 0.00 0.00 2.23
4479 6039 2.290641 ACCGCTCAAAACCATCCACATA 60.291 45.455 0.00 0.00 0.00 2.29
4480 6040 1.176527 CCGCTCAAAACCATCCACAT 58.823 50.000 0.00 0.00 0.00 3.21
4481 6041 0.179004 ACCGCTCAAAACCATCCACA 60.179 50.000 0.00 0.00 0.00 4.17
4482 6042 0.240945 CACCGCTCAAAACCATCCAC 59.759 55.000 0.00 0.00 0.00 4.02
4483 6043 0.893270 CCACCGCTCAAAACCATCCA 60.893 55.000 0.00 0.00 0.00 3.41
4484 6044 1.883021 CCACCGCTCAAAACCATCC 59.117 57.895 0.00 0.00 0.00 3.51
4485 6045 1.212751 GCCACCGCTCAAAACCATC 59.787 57.895 0.00 0.00 0.00 3.51
4486 6046 1.112315 TTGCCACCGCTCAAAACCAT 61.112 50.000 0.00 0.00 35.36 3.55
4487 6047 1.733402 CTTGCCACCGCTCAAAACCA 61.733 55.000 0.00 0.00 35.36 3.67
4564 6143 0.674581 TGATTCGGCAAGTGCTCAGG 60.675 55.000 2.85 0.00 41.70 3.86
4612 6196 1.045350 TGGCTGCTAGCTAGGGAGTG 61.045 60.000 22.10 0.00 41.99 3.51
4619 6203 7.093988 TGTTTTTATTTGATTGGCTGCTAGCTA 60.094 33.333 17.23 1.31 41.99 3.32
4722 6306 1.798813 GTTCTTGAGCGTTGGTAGGTG 59.201 52.381 0.00 0.00 0.00 4.00
4757 6341 2.524569 AATTGTTTTGGGTGCTTCCG 57.475 45.000 0.00 0.00 37.00 4.30
4792 6376 8.877864 ATGGAATAATGGTCACAGAAAGTTAA 57.122 30.769 0.00 0.00 0.00 2.01
4822 6406 2.007608 GTCCTTTCTATGTTCCGGTGC 58.992 52.381 0.00 0.00 0.00 5.01
4934 6518 7.461182 AGAGTTGCTATCCACATATCTAGTC 57.539 40.000 0.00 0.00 0.00 2.59
4963 6547 6.432581 TGGAAGTTGCTAGTTCTAGATAGGA 58.567 40.000 14.11 0.00 34.68 2.94
4974 6558 3.077359 GTGCAATCTGGAAGTTGCTAGT 58.923 45.455 10.86 0.00 45.10 2.57
4998 6582 4.793028 GCTCTTACTATGCACATGCTCGTA 60.793 45.833 5.31 1.57 42.66 3.43
5000 6584 2.474359 GCTCTTACTATGCACATGCTCG 59.526 50.000 5.31 0.00 42.66 5.03
5001 6585 3.461061 TGCTCTTACTATGCACATGCTC 58.539 45.455 5.31 0.00 42.66 4.26
5002 6586 3.548745 TGCTCTTACTATGCACATGCT 57.451 42.857 5.31 0.00 42.66 3.79
5003 6587 4.063689 AGATGCTCTTACTATGCACATGC 58.936 43.478 0.00 0.00 39.63 4.06
5004 6588 6.218746 TGTAGATGCTCTTACTATGCACATG 58.781 40.000 0.00 0.00 39.63 3.21
5005 6589 6.410942 TGTAGATGCTCTTACTATGCACAT 57.589 37.500 0.00 0.00 39.63 3.21
5006 6590 5.737349 GCTGTAGATGCTCTTACTATGCACA 60.737 44.000 0.00 0.00 39.63 4.57
5007 6591 4.683781 GCTGTAGATGCTCTTACTATGCAC 59.316 45.833 0.00 0.00 39.63 4.57
5008 6592 4.262207 GGCTGTAGATGCTCTTACTATGCA 60.262 45.833 0.00 0.00 41.13 3.96
5009 6593 4.241681 GGCTGTAGATGCTCTTACTATGC 58.758 47.826 0.00 0.00 0.00 3.14
5010 6594 4.480541 CGGCTGTAGATGCTCTTACTATG 58.519 47.826 0.00 0.00 0.00 2.23
5011 6595 3.057174 GCGGCTGTAGATGCTCTTACTAT 60.057 47.826 0.00 0.00 0.00 2.12
5012 6596 2.293677 GCGGCTGTAGATGCTCTTACTA 59.706 50.000 0.00 0.00 0.00 1.82
5013 6597 1.067821 GCGGCTGTAGATGCTCTTACT 59.932 52.381 0.00 0.00 0.00 2.24
5032 6616 0.671472 GACCCAAATTTGCAGGCTGC 60.671 55.000 31.91 31.91 45.29 5.25
5035 6619 0.686789 AAGGACCCAAATTTGCAGGC 59.313 50.000 12.92 8.10 0.00 4.85
5047 6631 0.671472 CCACGGACGTTTAAGGACCC 60.671 60.000 0.00 0.00 0.00 4.46
5048 6632 0.318120 TCCACGGACGTTTAAGGACC 59.682 55.000 0.00 0.00 0.00 4.46
5049 6633 1.422388 GTCCACGGACGTTTAAGGAC 58.578 55.000 13.78 13.78 38.77 3.85
5050 6634 3.892200 GTCCACGGACGTTTAAGGA 57.108 52.632 0.00 0.00 35.30 3.36
5060 6644 2.092323 CATCTAGTCACTGTCCACGGA 58.908 52.381 0.00 0.00 0.00 4.69
5075 6659 5.815233 TGGCAAAATTTGAAACCCATCTA 57.185 34.783 10.26 0.00 0.00 1.98
5078 6662 6.774656 TGTAAATGGCAAAATTTGAAACCCAT 59.225 30.769 10.26 9.49 33.15 4.00
5083 6667 7.121168 TGTGGTTGTAAATGGCAAAATTTGAAA 59.879 29.630 10.26 0.00 32.16 2.69
5114 6698 7.807433 TGTGTTTGCATGTATTAGCTGTTTTAG 59.193 33.333 0.00 0.00 0.00 1.85
5146 6736 6.017934 CCGACTAAACATCCAAAATCATCGAT 60.018 38.462 0.00 0.00 0.00 3.59
5152 6742 3.181490 GCCCCGACTAAACATCCAAAATC 60.181 47.826 0.00 0.00 0.00 2.17
5165 6755 3.008157 TGTTTAATCAACAGCCCCGACTA 59.992 43.478 0.00 0.00 40.71 2.59
5166 6756 2.224670 TGTTTAATCAACAGCCCCGACT 60.225 45.455 0.00 0.00 40.71 4.18
5168 6771 2.156098 GTGTTTAATCAACAGCCCCGA 58.844 47.619 0.00 0.00 46.49 5.14
5184 6787 8.978874 TGAAGTATGAGCATATATTTGGTGTT 57.021 30.769 2.44 0.00 0.00 3.32
5195 6798 8.969260 ATGTGAAAATCTGAAGTATGAGCATA 57.031 30.769 0.00 0.00 0.00 3.14
5196 6799 7.876936 ATGTGAAAATCTGAAGTATGAGCAT 57.123 32.000 0.00 0.00 0.00 3.79
5221 6824 5.365619 GAAACCCGTCTGTCCAATATACAT 58.634 41.667 0.00 0.00 0.00 2.29
5222 6825 4.678574 CGAAACCCGTCTGTCCAATATACA 60.679 45.833 0.00 0.00 0.00 2.29
5223 6826 3.800506 CGAAACCCGTCTGTCCAATATAC 59.199 47.826 0.00 0.00 0.00 1.47
5227 6830 0.321298 CCGAAACCCGTCTGTCCAAT 60.321 55.000 0.00 0.00 36.31 3.16
5229 6832 1.189524 ATCCGAAACCCGTCTGTCCA 61.190 55.000 0.00 0.00 36.31 4.02
5231 6834 0.037605 ACATCCGAAACCCGTCTGTC 60.038 55.000 0.00 0.00 36.31 3.51
5232 6835 0.395312 AACATCCGAAACCCGTCTGT 59.605 50.000 0.00 0.00 36.31 3.41
5233 6836 1.519408 AAACATCCGAAACCCGTCTG 58.481 50.000 0.00 0.00 36.31 3.51
5234 6837 2.301009 ACTAAACATCCGAAACCCGTCT 59.699 45.455 0.00 0.00 36.31 4.18
5235 6838 2.669924 GACTAAACATCCGAAACCCGTC 59.330 50.000 0.00 0.00 36.31 4.79
5236 6839 2.613725 GGACTAAACATCCGAAACCCGT 60.614 50.000 0.00 0.00 36.31 5.28
5268 6871 0.439985 CATTCCACTCGCTTGTCACG 59.560 55.000 0.00 0.00 0.00 4.35
5273 6876 4.481930 TTTAACACATTCCACTCGCTTG 57.518 40.909 0.00 0.00 0.00 4.01
5274 6877 5.163754 GCTATTTAACACATTCCACTCGCTT 60.164 40.000 0.00 0.00 0.00 4.68
5282 6885 4.084013 CGATCCGGCTATTTAACACATTCC 60.084 45.833 0.00 0.00 0.00 3.01
5285 6888 4.056050 GACGATCCGGCTATTTAACACAT 58.944 43.478 0.00 0.00 0.00 3.21
5288 6891 2.431419 TGGACGATCCGGCTATTTAACA 59.569 45.455 0.00 0.00 40.17 2.41
5289 6892 3.057734 CTGGACGATCCGGCTATTTAAC 58.942 50.000 0.00 0.00 40.17 2.01
5299 6902 0.591659 TATCGCTTCTGGACGATCCG 59.408 55.000 0.63 0.00 45.35 4.18
5325 6928 6.404734 CCTTAACAAAGAGTGTAATGATGCCC 60.405 42.308 0.00 0.00 40.60 5.36
5327 6930 7.377766 TCCTTAACAAAGAGTGTAATGATGC 57.622 36.000 0.00 0.00 40.60 3.91
5358 6961 5.245531 AGCCGAGAAGATTAATTGTGACAA 58.754 37.500 0.00 0.00 0.00 3.18
5365 6968 7.500992 TCTGTGATAAGCCGAGAAGATTAATT 58.499 34.615 0.00 0.00 0.00 1.40
5422 7029 8.662141 GTCGTGTAACCATCAATGTTTAGTTAT 58.338 33.333 0.00 0.00 0.00 1.89
5423 7030 7.874016 AGTCGTGTAACCATCAATGTTTAGTTA 59.126 33.333 0.00 0.00 0.00 2.24
5427 7034 6.460781 AGAGTCGTGTAACCATCAATGTTTA 58.539 36.000 0.00 0.00 0.00 2.01
5442 7049 5.811399 TTGTGATTCAAAAAGAGTCGTGT 57.189 34.783 0.00 0.00 35.87 4.49
5468 7076 1.820056 TGCACTTTGCCCGTTCGAA 60.820 52.632 0.00 0.00 44.23 3.71
5502 7110 2.888863 GTCTACAGCTCTGCCGCT 59.111 61.111 0.00 0.00 41.90 5.52
5515 7123 2.478031 GCTTCTCAGCATCGAACGTCTA 60.478 50.000 0.00 0.00 46.49 2.59
5529 7137 7.004555 TCTACCTCTTTACAATTGCTTCTCA 57.995 36.000 5.05 0.00 0.00 3.27
5539 7147 4.962995 CCCCTCTGATCTACCTCTTTACAA 59.037 45.833 0.00 0.00 0.00 2.41
5542 7150 5.483174 TTCCCCTCTGATCTACCTCTTTA 57.517 43.478 0.00 0.00 0.00 1.85
5547 7155 3.592865 GGAATTCCCCTCTGATCTACCT 58.407 50.000 14.03 0.00 0.00 3.08
5553 7161 0.761802 GAGCGGAATTCCCCTCTGAT 59.238 55.000 25.71 9.06 32.66 2.90
5618 7226 0.327480 ACACATATGGGGAGGCCTGA 60.327 55.000 12.00 0.00 0.00 3.86
5634 7242 6.157211 CCTCATCAACCCGTATATAAGACAC 58.843 44.000 0.00 0.00 0.00 3.67
5636 7244 5.479375 TCCCTCATCAACCCGTATATAAGAC 59.521 44.000 0.00 0.00 0.00 3.01
5639 7247 5.338056 GCATCCCTCATCAACCCGTATATAA 60.338 44.000 0.00 0.00 0.00 0.98
5640 7248 4.161565 GCATCCCTCATCAACCCGTATATA 59.838 45.833 0.00 0.00 0.00 0.86
5646 7254 1.526917 GGCATCCCTCATCAACCCG 60.527 63.158 0.00 0.00 0.00 5.28
5648 7256 0.109342 ATCGGCATCCCTCATCAACC 59.891 55.000 0.00 0.00 0.00 3.77
5676 7287 3.800506 CGTCTTAAACAGGACTCAAACGT 59.199 43.478 0.00 0.00 0.00 3.99
5724 7338 0.243907 CGTCTCGGTGGTCAGTGATT 59.756 55.000 0.00 0.00 0.00 2.57
5725 7339 1.883732 CGTCTCGGTGGTCAGTGAT 59.116 57.895 0.00 0.00 0.00 3.06
5726 7340 2.916052 GCGTCTCGGTGGTCAGTGA 61.916 63.158 0.00 0.00 0.00 3.41
5727 7341 2.430921 GCGTCTCGGTGGTCAGTG 60.431 66.667 0.00 0.00 0.00 3.66
5728 7342 3.681835 GGCGTCTCGGTGGTCAGT 61.682 66.667 0.00 0.00 0.00 3.41
5743 7357 4.825252 ATTGTACGTCCGGCGGGC 62.825 66.667 27.98 25.56 46.52 6.13
5744 7358 2.888534 CATTGTACGTCCGGCGGG 60.889 66.667 27.98 13.85 46.52 6.13
5745 7359 2.888534 CCATTGTACGTCCGGCGG 60.889 66.667 22.51 22.51 46.52 6.13
5747 7361 0.956902 AAACCCATTGTACGTCCGGC 60.957 55.000 0.00 0.00 0.00 6.13
5748 7362 0.800012 CAAACCCATTGTACGTCCGG 59.200 55.000 0.00 0.00 34.16 5.14
5749 7363 1.730064 CTCAAACCCATTGTACGTCCG 59.270 52.381 0.00 0.00 40.11 4.79
5750 7364 2.081462 CCTCAAACCCATTGTACGTCC 58.919 52.381 0.00 0.00 40.11 4.79
5751 7365 1.467342 GCCTCAAACCCATTGTACGTC 59.533 52.381 0.00 0.00 40.11 4.34
5752 7366 1.530323 GCCTCAAACCCATTGTACGT 58.470 50.000 0.00 0.00 40.11 3.57
5753 7367 0.446222 CGCCTCAAACCCATTGTACG 59.554 55.000 0.00 0.00 40.11 3.67
5758 7372 1.978617 CAGGCGCCTCAAACCCATT 60.979 57.895 30.29 0.00 0.00 3.16
5759 7373 2.361610 CAGGCGCCTCAAACCCAT 60.362 61.111 30.29 0.00 0.00 4.00
5792 7406 1.131126 GTCGTCTTGCCAATGTGGATG 59.869 52.381 0.00 0.00 40.96 3.51
5809 7431 2.410262 GCGATAATGCAAGGATTCGTCG 60.410 50.000 13.58 13.58 34.15 5.12
5852 7474 5.300286 CCAGGACATTGTCAGAAAAAGACTT 59.700 40.000 18.09 0.00 36.94 3.01
5887 7509 5.221422 GCTGAGAGGATTTGATAGCTAGTGT 60.221 44.000 0.00 0.00 0.00 3.55
5900 7522 2.315443 CCCCAAGGCTGAGAGGATT 58.685 57.895 0.00 0.00 0.00 3.01
5953 7575 2.287188 CCATGCATTTCTATCGGTGTGC 60.287 50.000 0.00 0.00 0.00 4.57
6023 7646 3.558033 TGCCTATCATCTACGTACACCA 58.442 45.455 0.00 0.00 0.00 4.17
6026 7649 4.036380 CACACTGCCTATCATCTACGTACA 59.964 45.833 0.00 0.00 0.00 2.90
6030 7653 2.864097 GCCACACTGCCTATCATCTACG 60.864 54.545 0.00 0.00 0.00 3.51
6111 8483 5.667539 ATCGGGTATCAATGATCACTAGG 57.332 43.478 0.00 0.00 0.00 3.02
6163 8536 1.577328 CCACCACCACGTGCTCATTC 61.577 60.000 10.91 0.00 32.10 2.67
6183 8556 2.970639 GACAGTGCCTAGACCGCA 59.029 61.111 0.00 0.00 0.00 5.69
6184 8557 2.202623 CGACAGTGCCTAGACCGC 60.203 66.667 0.00 0.00 0.00 5.68
6185 8558 0.038526 AAACGACAGTGCCTAGACCG 60.039 55.000 0.00 0.00 0.00 4.79
6186 8559 1.798813 CAAAACGACAGTGCCTAGACC 59.201 52.381 0.00 0.00 0.00 3.85
6187 8560 1.194772 GCAAAACGACAGTGCCTAGAC 59.805 52.381 0.00 0.00 31.94 2.59
6188 8561 1.202592 TGCAAAACGACAGTGCCTAGA 60.203 47.619 0.00 0.00 37.48 2.43
6189 8562 1.195448 CTGCAAAACGACAGTGCCTAG 59.805 52.381 0.00 0.00 37.48 3.02
6287 8660 7.093945 ACAAAACTGTGAAGTGACAAAAGGTAT 60.094 33.333 0.00 0.00 0.00 2.73
6300 8674 1.939934 TGCGAGGACAAAACTGTGAAG 59.060 47.619 0.00 0.00 0.00 3.02
6341 8715 5.512753 TGTAACCGGTTAAGCGATATGTA 57.487 39.130 28.11 0.79 0.00 2.29
6342 8716 4.389890 TGTAACCGGTTAAGCGATATGT 57.610 40.909 28.11 13.97 0.00 2.29
6343 8717 4.377022 GCATGTAACCGGTTAAGCGATATG 60.377 45.833 28.11 20.84 0.00 1.78
6351 8725 3.945346 AGTGATGCATGTAACCGGTTAA 58.055 40.909 28.11 18.00 0.00 2.01
6355 8729 3.500982 CAAAAGTGATGCATGTAACCGG 58.499 45.455 2.46 0.00 0.00 5.28
6378 8752 4.912586 TCGCTAGCTAGGAGATAGACATT 58.087 43.478 22.10 0.00 36.36 2.71
6411 8785 3.845178 ACGCAAGACATTTCGAGACATA 58.155 40.909 0.00 0.00 43.62 2.29
6412 8786 2.688507 ACGCAAGACATTTCGAGACAT 58.311 42.857 0.00 0.00 43.62 3.06
6413 8787 2.148916 ACGCAAGACATTTCGAGACA 57.851 45.000 0.00 0.00 43.62 3.41
6414 8788 3.470562 GAAACGCAAGACATTTCGAGAC 58.529 45.455 0.00 0.00 43.62 3.36
6446 8820 4.739716 CGAATTTGGTGTCTCAAAGGTTTG 59.260 41.667 0.00 0.00 39.59 2.93
6454 8828 3.599343 CTCATCCGAATTTGGTGTCTCA 58.401 45.455 11.68 0.00 0.00 3.27
6460 8834 3.054434 TGTCATCCTCATCCGAATTTGGT 60.054 43.478 11.68 0.00 0.00 3.67
6541 8915 2.045885 TCATATATCCCCCTGACCCCTC 59.954 54.545 0.00 0.00 0.00 4.30
6542 8916 2.098330 TCATATATCCCCCTGACCCCT 58.902 52.381 0.00 0.00 0.00 4.79
6543 8917 2.661176 TCATATATCCCCCTGACCCC 57.339 55.000 0.00 0.00 0.00 4.95
6545 8919 5.501156 GAACATTCATATATCCCCCTGACC 58.499 45.833 0.00 0.00 0.00 4.02
6546 8920 5.178797 CGAACATTCATATATCCCCCTGAC 58.821 45.833 0.00 0.00 0.00 3.51
6548 8922 5.165961 ACGAACATTCATATATCCCCCTG 57.834 43.478 0.00 0.00 0.00 4.45
6568 8942 3.878699 TCAATGATGATGATGGGTGAACG 59.121 43.478 0.00 0.00 0.00 3.95
6572 8947 3.558033 TGGTCAATGATGATGATGGGTG 58.442 45.455 0.00 0.00 38.01 4.61
6573 8948 3.957508 TGGTCAATGATGATGATGGGT 57.042 42.857 0.00 0.00 38.01 4.51
6614 8989 6.088016 AGTCTATTGAGATCAGCATGTCTC 57.912 41.667 4.50 4.50 40.93 3.36
6694 9078 3.138625 CACTCCACTGTGGTCGGT 58.861 61.111 25.15 18.53 39.03 4.69
6734 9123 0.830648 TGACCGATGACCCCAGATTC 59.169 55.000 0.00 0.00 0.00 2.52
6749 9138 2.322830 GGAAGTCGCCGGTTTGACC 61.323 63.158 16.61 5.29 35.71 4.02
6798 9187 1.035923 GATCTCCCTGCATGACGAGA 58.964 55.000 0.00 0.21 35.91 4.04
7135 9524 2.433436 GCTCGTGGGAATTTTACCTGT 58.567 47.619 0.00 0.00 30.18 4.00
7159 9548 6.990349 GCATAAATTACTAGGAGTAGTTGCCA 59.010 38.462 0.00 0.00 40.23 4.92
7160 9549 6.990349 TGCATAAATTACTAGGAGTAGTTGCC 59.010 38.462 0.00 0.00 40.23 4.52
7161 9550 7.711339 ACTGCATAAATTACTAGGAGTAGTTGC 59.289 37.037 0.00 0.00 40.23 4.17
7168 9557 8.634444 ACTCACTACTGCATAAATTACTAGGAG 58.366 37.037 0.00 0.00 0.00 3.69
7169 9558 8.534954 ACTCACTACTGCATAAATTACTAGGA 57.465 34.615 0.00 0.00 0.00 2.94
7170 9559 9.035607 CAACTCACTACTGCATAAATTACTAGG 57.964 37.037 0.00 0.00 0.00 3.02
7171 9560 9.587772 ACAACTCACTACTGCATAAATTACTAG 57.412 33.333 0.00 0.00 0.00 2.57
7172 9561 9.366216 CACAACTCACTACTGCATAAATTACTA 57.634 33.333 0.00 0.00 0.00 1.82
7174 9563 8.169268 GTCACAACTCACTACTGCATAAATTAC 58.831 37.037 0.00 0.00 0.00 1.89
7182 9571 1.679153 TCGTCACAACTCACTACTGCA 59.321 47.619 0.00 0.00 0.00 4.41
7188 9577 1.032794 TCAGCTCGTCACAACTCACT 58.967 50.000 0.00 0.00 0.00 3.41
7190 9579 1.936656 GCATCAGCTCGTCACAACTCA 60.937 52.381 0.00 0.00 37.91 3.41
7193 9582 0.867746 TTGCATCAGCTCGTCACAAC 59.132 50.000 0.00 0.00 42.74 3.32
7219 9612 3.055591 CGTTGCTCACTGCCTATAGATG 58.944 50.000 0.00 0.00 42.00 2.90
7221 9614 1.409064 CCGTTGCTCACTGCCTATAGA 59.591 52.381 0.00 0.00 42.00 1.98
7222 9615 1.858091 CCGTTGCTCACTGCCTATAG 58.142 55.000 0.00 0.00 42.00 1.31
7225 9618 2.047274 GCCGTTGCTCACTGCCTA 60.047 61.111 0.00 0.00 42.00 3.93
7230 9623 4.351938 TACGCGCCGTTGCTCACT 62.352 61.111 5.73 0.00 41.54 3.41
7231 9624 4.130281 GTACGCGCCGTTGCTCAC 62.130 66.667 5.73 0.00 41.54 3.51
7446 9839 1.447489 CGTGAAGAGCTCCAGGCAG 60.447 63.158 10.93 0.00 44.79 4.85
7507 9900 1.074775 GGATGTCCACTGCACCCAA 59.925 57.895 0.00 0.00 35.64 4.12
7549 9942 1.296068 CGCACATTGGGGGCATTTT 59.704 52.632 0.00 0.00 0.00 1.82
7640 10033 7.227314 CACACACACGTACTAGTATATAGGGAA 59.773 40.741 5.75 0.00 0.00 3.97
7656 10049 1.069568 CAAACACACACACACACACGT 60.070 47.619 0.00 0.00 0.00 4.49
7657 10050 1.069568 ACAAACACACACACACACACG 60.070 47.619 0.00 0.00 0.00 4.49
7663 10056 8.864024 CACAATTAATAAACAAACACACACACA 58.136 29.630 0.00 0.00 0.00 3.72
7665 10058 9.809096 ATCACAATTAATAAACAAACACACACA 57.191 25.926 0.00 0.00 0.00 3.72
7667 10060 9.469807 GGATCACAATTAATAAACAAACACACA 57.530 29.630 0.00 0.00 0.00 3.72
7703 10104 5.487488 TCTTGGACCAGTGTACCATAATTCT 59.513 40.000 6.40 0.00 33.56 2.40
7716 10117 0.250338 GCGTTTCCTCTTGGACCAGT 60.250 55.000 0.00 0.00 43.06 4.00
7717 10118 0.035458 AGCGTTTCCTCTTGGACCAG 59.965 55.000 0.00 0.00 43.06 4.00
7718 10119 0.250295 CAGCGTTTCCTCTTGGACCA 60.250 55.000 0.00 0.00 43.06 4.02
7719 10120 0.250338 ACAGCGTTTCCTCTTGGACC 60.250 55.000 0.00 0.00 43.06 4.46
7722 10126 2.163818 TACACAGCGTTTCCTCTTGG 57.836 50.000 0.00 0.00 0.00 3.61
7729 10133 6.362283 ACAGCAAATTTATTACACAGCGTTTC 59.638 34.615 0.00 0.00 0.00 2.78
7737 10141 6.417191 TCCTCGACAGCAAATTTATTACAC 57.583 37.500 0.00 0.00 0.00 2.90
7756 10169 3.195825 TGGTTTAGTTAGCTCAGCTCCTC 59.804 47.826 0.00 0.00 40.44 3.71
7769 10182 7.147811 TGGTTGCTCTAACATTTTGGTTTAGTT 60.148 33.333 0.00 0.00 41.18 2.24
7792 10205 7.016366 GGAGTACTTAATAGGGCTTCTTATGGT 59.984 40.741 0.00 0.00 0.00 3.55
7793 10206 7.387643 GGAGTACTTAATAGGGCTTCTTATGG 58.612 42.308 0.00 0.00 0.00 2.74
7794 10207 7.235812 AGGGAGTACTTAATAGGGCTTCTTATG 59.764 40.741 0.00 0.00 0.00 1.90
7799 10212 6.076653 AGTAGGGAGTACTTAATAGGGCTTC 58.923 44.000 0.00 0.00 39.06 3.86
7813 10226 8.005388 AGCATTTAGATCACTAAGTAGGGAGTA 58.995 37.037 0.00 0.00 39.45 2.59
7814 10227 6.841755 AGCATTTAGATCACTAAGTAGGGAGT 59.158 38.462 0.00 0.00 39.45 3.85
7815 10228 7.232534 AGAGCATTTAGATCACTAAGTAGGGAG 59.767 40.741 0.00 0.00 39.45 4.30
7816 10229 7.069986 AGAGCATTTAGATCACTAAGTAGGGA 58.930 38.462 0.00 0.00 40.55 4.20
7817 10230 7.296628 AGAGCATTTAGATCACTAAGTAGGG 57.703 40.000 0.00 0.00 39.36 3.53
7835 10248 9.920946 TCCCTTTGTAAAGAAATATAAGAGCAT 57.079 29.630 5.95 0.00 38.28 3.79
7836 10249 9.396022 CTCCCTTTGTAAAGAAATATAAGAGCA 57.604 33.333 5.95 0.00 38.28 4.26
7837 10250 9.397280 ACTCCCTTTGTAAAGAAATATAAGAGC 57.603 33.333 5.95 0.00 38.28 4.09
7844 10257 8.262933 GCCTACTACTCCCTTTGTAAAGAAATA 58.737 37.037 5.95 0.00 38.28 1.40
7845 10258 7.037514 AGCCTACTACTCCCTTTGTAAAGAAAT 60.038 37.037 5.95 0.00 38.28 2.17
7846 10259 6.271624 AGCCTACTACTCCCTTTGTAAAGAAA 59.728 38.462 5.95 0.00 38.28 2.52
7847 10260 5.783875 AGCCTACTACTCCCTTTGTAAAGAA 59.216 40.000 5.95 0.00 38.28 2.52
7848 10261 5.339477 AGCCTACTACTCCCTTTGTAAAGA 58.661 41.667 5.95 0.00 38.28 2.52
7849 10262 5.678955 AGCCTACTACTCCCTTTGTAAAG 57.321 43.478 0.00 0.00 35.79 1.85
7850 10263 8.843308 TTATAGCCTACTACTCCCTTTGTAAA 57.157 34.615 0.00 0.00 0.00 2.01
7851 10264 8.867097 CATTATAGCCTACTACTCCCTTTGTAA 58.133 37.037 0.00 0.00 0.00 2.41
7852 10265 8.008922 ACATTATAGCCTACTACTCCCTTTGTA 58.991 37.037 0.00 0.00 0.00 2.41
7853 10266 6.844917 ACATTATAGCCTACTACTCCCTTTGT 59.155 38.462 0.00 0.00 0.00 2.83
7854 10267 7.155328 CACATTATAGCCTACTACTCCCTTTG 58.845 42.308 0.00 0.00 0.00 2.77
7855 10268 6.844917 ACACATTATAGCCTACTACTCCCTTT 59.155 38.462 0.00 0.00 0.00 3.11
7856 10269 6.382925 ACACATTATAGCCTACTACTCCCTT 58.617 40.000 0.00 0.00 0.00 3.95
7857 10270 5.966684 ACACATTATAGCCTACTACTCCCT 58.033 41.667 0.00 0.00 0.00 4.20
7858 10271 6.667558 AACACATTATAGCCTACTACTCCC 57.332 41.667 0.00 0.00 0.00 4.30
7859 10272 7.015389 AGGAAACACATTATAGCCTACTACTCC 59.985 40.741 0.00 0.00 0.00 3.85
7860 10273 7.868415 CAGGAAACACATTATAGCCTACTACTC 59.132 40.741 0.00 0.00 0.00 2.59
7861 10274 7.687103 GCAGGAAACACATTATAGCCTACTACT 60.687 40.741 0.00 0.00 0.00 2.57
7862 10275 6.424207 GCAGGAAACACATTATAGCCTACTAC 59.576 42.308 0.00 0.00 0.00 2.73
7863 10276 6.463897 GGCAGGAAACACATTATAGCCTACTA 60.464 42.308 0.00 0.00 36.72 1.82
7864 10277 5.368989 GCAGGAAACACATTATAGCCTACT 58.631 41.667 0.00 0.00 0.00 2.57
7865 10278 4.515567 GGCAGGAAACACATTATAGCCTAC 59.484 45.833 0.00 0.00 36.72 3.18
7872 10285 5.202765 TGATGATGGCAGGAAACACATTAT 58.797 37.500 0.00 0.00 0.00 1.28
7875 10288 3.021695 CTGATGATGGCAGGAAACACAT 58.978 45.455 0.00 0.00 0.00 3.21
7886 10299 6.567321 CGTCAAAATAGGATTCTGATGATGGC 60.567 42.308 0.00 0.00 0.00 4.40
7907 10320 4.395625 TCTTCTCTTACCTTCTCACGTCA 58.604 43.478 0.00 0.00 0.00 4.35
7910 10323 5.630661 TTCTCTTCTCTTACCTTCTCACG 57.369 43.478 0.00 0.00 0.00 4.35
7938 10351 1.675641 GGTGTGCGGGCTTCATTCT 60.676 57.895 0.00 0.00 0.00 2.40
7939 10352 2.877691 GGTGTGCGGGCTTCATTC 59.122 61.111 0.00 0.00 0.00 2.67
7964 10377 4.736473 AGTTTTATGTGTTTAGGCTGGGT 58.264 39.130 0.00 0.00 0.00 4.51
7965 10378 6.177610 TCTAGTTTTATGTGTTTAGGCTGGG 58.822 40.000 0.00 0.00 0.00 4.45
7984 10397 5.869888 CGCACTGAGGTTATTTTTCTCTAGT 59.130 40.000 0.00 0.00 0.00 2.57
7996 10409 2.034432 TGTAACGTTCGCACTGAGGTTA 59.966 45.455 2.82 0.00 0.00 2.85
8009 10422 4.095782 AGTGAAACACATGCTTGTAACGTT 59.904 37.500 5.88 5.88 41.43 3.99
8010 10423 3.625764 AGTGAAACACATGCTTGTAACGT 59.374 39.130 4.73 0.00 41.43 3.99
8011 10424 4.209452 AGTGAAACACATGCTTGTAACG 57.791 40.909 4.73 0.00 41.43 3.18
8013 10426 6.934083 TCATCTAGTGAAACACATGCTTGTAA 59.066 34.615 4.73 0.00 41.43 2.41
8014 10427 6.463360 TCATCTAGTGAAACACATGCTTGTA 58.537 36.000 4.73 0.00 41.43 2.41
8015 10428 5.308014 TCATCTAGTGAAACACATGCTTGT 58.692 37.500 0.00 0.00 41.43 3.16
8016 10429 5.868043 TCATCTAGTGAAACACATGCTTG 57.132 39.130 4.75 0.00 41.43 4.01
8061 10476 2.860136 CGAGCTGATTCGATTGCTAACA 59.140 45.455 0.00 0.00 43.03 2.41
8120 10922 7.796054 TCTAGATTCAGAACCAAGATTTAGGG 58.204 38.462 0.00 0.00 0.00 3.53
8135 10937 6.221659 TGAGTGCATATGCTTCTAGATTCAG 58.778 40.000 27.13 0.00 42.66 3.02
8140 10942 5.796424 TCATGAGTGCATATGCTTCTAGA 57.204 39.130 27.13 20.07 42.66 2.43
8153 10955 7.766219 AAATTGCAAGATAAATCATGAGTGC 57.234 32.000 4.94 0.00 0.00 4.40
8207 11009 6.983890 GCCTCCAATTAAACTTGAAAGTGAAA 59.016 34.615 0.00 0.00 39.66 2.69
8257 11059 7.180322 TGCCCTTATGCAATTTCTGATTTTA 57.820 32.000 0.00 0.00 38.56 1.52
8305 11107 9.495572 GTTCACACAAATAAAATGGGGAAAATA 57.504 29.630 0.00 0.00 0.00 1.40
8314 11116 5.852827 ACCCTGGTTCACACAAATAAAATG 58.147 37.500 0.00 0.00 0.00 2.32
8352 11154 8.840200 TTTACCCATAGTTTAAATGCCCAATA 57.160 30.769 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.