Multiple sequence alignment - TraesCS2A01G394900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G394900 chr2A 100.000 3646 0 0 1 3646 646553175 646556820 0.000000e+00 6734.0
1 TraesCS2A01G394900 chr2A 87.624 404 45 4 1 399 443628528 443628931 7.130000e-127 464.0
2 TraesCS2A01G394900 chr2A 79.218 409 52 21 11 404 712709090 712708700 1.680000e-63 254.0
3 TraesCS2A01G394900 chr2A 83.846 130 20 1 603 732 161773013 161772885 4.940000e-24 122.0
4 TraesCS2A01G394900 chr2D 94.442 2627 118 16 404 3017 500794209 500791598 0.000000e+00 4017.0
5 TraesCS2A01G394900 chr2D 93.738 511 28 4 3136 3646 500791566 500791060 0.000000e+00 763.0
6 TraesCS2A01G394900 chr2D 91.860 86 7 0 3016 3101 69249068 69249153 1.780000e-23 121.0
7 TraesCS2A01G394900 chr2B 93.505 1986 88 18 840 2809 588534317 588536277 0.000000e+00 2915.0
8 TraesCS2A01G394900 chr2B 83.960 505 47 25 3136 3640 588536898 588537368 1.540000e-123 453.0
9 TraesCS2A01G394900 chr2B 92.708 192 11 2 2791 2982 588536584 588536772 1.290000e-69 274.0
10 TraesCS2A01G394900 chr1A 91.392 395 32 2 1 393 361178361 361178755 1.150000e-149 540.0
11 TraesCS2A01G394900 chr4B 86.797 409 38 8 1 394 377934768 377934361 3.340000e-120 442.0
12 TraesCS2A01G394900 chr4B 83.971 418 47 13 1 400 341929054 341928639 2.050000e-102 383.0
13 TraesCS2A01G394900 chr7B 86.165 412 41 8 1 397 87145260 87144850 7.230000e-117 431.0
14 TraesCS2A01G394900 chr7B 89.888 89 9 0 3016 3104 107620828 107620916 8.270000e-22 115.0
15 TraesCS2A01G394900 chr7B 90.698 86 8 0 3016 3101 389125446 389125531 8.270000e-22 115.0
16 TraesCS2A01G394900 chr6D 85.819 409 44 8 1 395 317856764 317856356 4.350000e-114 422.0
17 TraesCS2A01G394900 chr6D 79.915 234 36 11 177 405 125401331 125401104 1.050000e-35 161.0
18 TraesCS2A01G394900 chr6D 86.822 129 16 1 601 728 436311053 436311181 3.800000e-30 143.0
19 TraesCS2A01G394900 chr6D 83.846 130 21 0 601 730 289497203 289497074 1.370000e-24 124.0
20 TraesCS2A01G394900 chr6D 86.087 115 16 0 616 730 457260081 457260195 1.370000e-24 124.0
21 TraesCS2A01G394900 chr3D 84.634 410 46 10 1 393 58989510 58989101 3.410000e-105 392.0
22 TraesCS2A01G394900 chr3D 84.352 409 47 10 1 392 58841886 58841478 5.710000e-103 385.0
23 TraesCS2A01G394900 chr3D 84.352 409 47 10 1 392 58896814 58896406 5.710000e-103 385.0
24 TraesCS2A01G394900 chr3D 82.482 137 23 1 601 736 445035685 445035549 6.400000e-23 119.0
25 TraesCS2A01G394900 chr5A 83.659 410 50 10 1 393 229489861 229490270 1.600000e-98 370.0
26 TraesCS2A01G394900 chr5A 93.023 86 6 0 3016 3101 333448849 333448934 3.820000e-25 126.0
27 TraesCS2A01G394900 chr5A 84.127 126 19 1 602 727 439554007 439553883 1.780000e-23 121.0
28 TraesCS2A01G394900 chr5A 85.185 108 16 0 3016 3123 408929434 408929327 1.070000e-20 111.0
29 TraesCS2A01G394900 chr7D 83.486 327 37 10 84 396 531866360 531866037 4.610000e-74 289.0
30 TraesCS2A01G394900 chr7D 83.846 130 19 2 598 725 478591441 478591312 4.940000e-24 122.0
31 TraesCS2A01G394900 chrUn 92.135 89 7 0 3016 3104 27088455 27088367 3.820000e-25 126.0
32 TraesCS2A01G394900 chrUn 92.135 89 7 0 3016 3104 76767139 76767051 3.820000e-25 126.0
33 TraesCS2A01G394900 chr6B 83.465 127 21 0 601 727 30307003 30307129 6.400000e-23 119.0
34 TraesCS2A01G394900 chr6B 92.157 51 0 2 3371 3418 18300597 18300646 6.530000e-08 69.4
35 TraesCS2A01G394900 chr3A 90.000 90 9 0 3015 3104 522176679 522176590 2.300000e-22 117.0
36 TraesCS2A01G394900 chr3A 96.078 51 1 1 3368 3418 310031980 310032029 8.390000e-12 82.4
37 TraesCS2A01G394900 chr5B 89.888 89 9 0 3016 3104 31114618 31114706 8.270000e-22 115.0
38 TraesCS2A01G394900 chr5B 97.436 39 1 0 3378 3416 548678719 548678681 2.350000e-07 67.6
39 TraesCS2A01G394900 chr5D 92.157 51 3 1 3370 3420 142356291 142356242 1.820000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G394900 chr2A 646553175 646556820 3645 False 6734 6734 100.000000 1 3646 1 chr2A.!!$F2 3645
1 TraesCS2A01G394900 chr2D 500791060 500794209 3149 True 2390 4017 94.090000 404 3646 2 chr2D.!!$R1 3242
2 TraesCS2A01G394900 chr2B 588534317 588537368 3051 False 1214 2915 90.057667 840 3640 3 chr2B.!!$F1 2800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 295 0.034896 ACTAGCCGGTTGTGGAGTTG 59.965 55.0 1.90 0.0 0.00 3.16 F
295 296 0.034896 CTAGCCGGTTGTGGAGTTGT 59.965 55.0 1.90 0.0 0.00 3.32 F
303 304 0.105964 TTGTGGAGTTGTGCTACGCT 59.894 50.0 0.00 0.0 39.29 5.07 F
304 305 0.319555 TGTGGAGTTGTGCTACGCTC 60.320 55.0 0.00 0.0 39.29 5.03 F
333 334 0.393077 AGCAAGTGGTAGCGTCTTGT 59.607 50.0 21.69 11.8 40.14 3.16 F
934 957 0.529773 GGATCACATTACGGCAGCGA 60.530 55.0 0.00 0.0 0.00 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2031 0.745845 TCGAGTAGGTGCCGACTACC 60.746 60.000 4.01 0.0 41.28 3.18 R
2287 2316 1.723870 GATGTTGATGACCAGCGCC 59.276 57.895 2.29 0.0 0.00 6.53 R
2308 2337 2.898729 AGGATACCTGCAGTTGATCG 57.101 50.000 13.81 0.0 29.57 3.69 R
2348 2377 0.528684 GGATGCCGTAGAGTGCTGTC 60.529 60.000 0.00 0.0 0.00 3.51 R
2441 2470 2.126850 TCGCTCTCGCTGTTCACG 60.127 61.111 0.00 0.0 35.26 4.35 R
2789 3141 0.109913 AAAGTTCTCCCGTTCACCCC 59.890 55.000 0.00 0.0 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.680237 TGTTGCGCTCCCTCGGTG 62.680 66.667 9.73 0.00 0.00 4.94
18 19 4.681978 GTTGCGCTCCCTCGGTGT 62.682 66.667 9.73 0.00 0.00 4.16
19 20 3.936203 TTGCGCTCCCTCGGTGTT 61.936 61.111 9.73 0.00 0.00 3.32
20 21 3.876589 TTGCGCTCCCTCGGTGTTC 62.877 63.158 9.73 0.00 0.00 3.18
24 25 4.452733 CTCCCTCGGTGTTCGCCC 62.453 72.222 0.00 0.00 39.05 6.13
27 28 4.760047 CCTCGGTGTTCGCCCCTG 62.760 72.222 0.00 0.00 39.05 4.45
34 35 4.115199 GTTCGCCCCTGCCCTGAT 62.115 66.667 0.00 0.00 0.00 2.90
35 36 3.797353 TTCGCCCCTGCCCTGATC 61.797 66.667 0.00 0.00 0.00 2.92
38 39 4.115199 GCCCCTGCCCTGATCGTT 62.115 66.667 0.00 0.00 0.00 3.85
39 40 2.190578 CCCCTGCCCTGATCGTTC 59.809 66.667 0.00 0.00 0.00 3.95
40 41 2.370445 CCCCTGCCCTGATCGTTCT 61.370 63.158 0.00 0.00 0.00 3.01
41 42 1.604378 CCCTGCCCTGATCGTTCTT 59.396 57.895 0.00 0.00 0.00 2.52
42 43 0.462759 CCCTGCCCTGATCGTTCTTC 60.463 60.000 0.00 0.00 0.00 2.87
43 44 0.462759 CCTGCCCTGATCGTTCTTCC 60.463 60.000 0.00 0.00 0.00 3.46
44 45 0.462759 CTGCCCTGATCGTTCTTCCC 60.463 60.000 0.00 0.00 0.00 3.97
45 46 1.153147 GCCCTGATCGTTCTTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
46 47 1.144057 CCCTGATCGTTCTTCCCCG 59.856 63.158 0.00 0.00 0.00 5.73
47 48 1.144057 CCTGATCGTTCTTCCCCGG 59.856 63.158 0.00 0.00 0.00 5.73
48 49 1.521681 CTGATCGTTCTTCCCCGGC 60.522 63.158 0.00 0.00 0.00 6.13
49 50 2.585247 GATCGTTCTTCCCCGGCG 60.585 66.667 0.00 0.00 0.00 6.46
50 51 4.832608 ATCGTTCTTCCCCGGCGC 62.833 66.667 0.00 0.00 0.00 6.53
53 54 2.750237 GTTCTTCCCCGGCGCAAT 60.750 61.111 10.83 0.00 0.00 3.56
54 55 2.749839 TTCTTCCCCGGCGCAATG 60.750 61.111 10.83 0.00 0.00 2.82
55 56 3.561120 TTCTTCCCCGGCGCAATGT 62.561 57.895 10.83 0.00 0.00 2.71
56 57 2.124901 CTTCCCCGGCGCAATGTA 60.125 61.111 10.83 0.00 0.00 2.29
57 58 2.437002 TTCCCCGGCGCAATGTAC 60.437 61.111 10.83 0.00 0.00 2.90
58 59 4.823419 TCCCCGGCGCAATGTACG 62.823 66.667 10.83 1.30 0.00 3.67
61 62 3.560278 CCGGCGCAATGTACGGTC 61.560 66.667 10.83 0.00 41.34 4.79
62 63 3.908951 CGGCGCAATGTACGGTCG 61.909 66.667 10.83 0.00 0.00 4.79
63 64 2.812178 GGCGCAATGTACGGTCGT 60.812 61.111 10.83 0.69 0.00 4.34
64 65 2.693285 GCGCAATGTACGGTCGTC 59.307 61.111 0.30 0.00 0.00 4.20
65 66 2.984466 CGCAATGTACGGTCGTCG 59.016 61.111 0.00 0.00 45.88 5.12
66 67 2.693285 GCAATGTACGGTCGTCGC 59.307 61.111 0.00 0.00 43.89 5.19
67 68 2.795389 GCAATGTACGGTCGTCGCC 61.795 63.158 0.00 0.00 43.89 5.54
75 76 2.884207 GGTCGTCGCCGGTGATTC 60.884 66.667 22.69 13.87 33.95 2.52
76 77 2.884207 GTCGTCGCCGGTGATTCC 60.884 66.667 22.69 7.56 33.95 3.01
77 78 3.375239 TCGTCGCCGGTGATTCCA 61.375 61.111 22.69 2.39 35.57 3.53
78 79 2.433491 CGTCGCCGGTGATTCCAA 60.433 61.111 22.69 0.00 35.57 3.53
79 80 2.452813 CGTCGCCGGTGATTCCAAG 61.453 63.158 22.69 5.18 35.57 3.61
80 81 1.079405 GTCGCCGGTGATTCCAAGA 60.079 57.895 22.69 0.00 35.57 3.02
81 82 1.079405 TCGCCGGTGATTCCAAGAC 60.079 57.895 15.21 0.00 35.57 3.01
82 83 2.452813 CGCCGGTGATTCCAAGACG 61.453 63.158 10.20 0.00 35.57 4.18
83 84 2.106683 GCCGGTGATTCCAAGACGG 61.107 63.158 1.90 0.00 38.52 4.79
84 85 1.295423 CCGGTGATTCCAAGACGGT 59.705 57.895 0.00 0.00 34.04 4.83
85 86 1.019278 CCGGTGATTCCAAGACGGTG 61.019 60.000 0.00 0.00 34.04 4.94
86 87 1.635663 CGGTGATTCCAAGACGGTGC 61.636 60.000 0.00 0.00 35.57 5.01
87 88 1.305930 GGTGATTCCAAGACGGTGCC 61.306 60.000 0.00 0.00 35.57 5.01
88 89 0.321653 GTGATTCCAAGACGGTGCCT 60.322 55.000 0.00 0.00 35.57 4.75
89 90 0.400213 TGATTCCAAGACGGTGCCTT 59.600 50.000 0.00 0.00 35.57 4.35
90 91 1.202879 TGATTCCAAGACGGTGCCTTT 60.203 47.619 0.00 0.00 35.57 3.11
91 92 1.886542 GATTCCAAGACGGTGCCTTTT 59.113 47.619 0.00 0.00 35.57 2.27
92 93 1.770294 TTCCAAGACGGTGCCTTTTT 58.230 45.000 0.00 0.00 35.57 1.94
110 111 4.903045 TTTTTAGGTCGGATTGAGTCCT 57.097 40.909 0.00 0.00 45.46 3.85
111 112 3.887621 TTTAGGTCGGATTGAGTCCTG 57.112 47.619 0.00 0.00 45.46 3.86
112 113 1.112113 TAGGTCGGATTGAGTCCTGC 58.888 55.000 0.00 0.00 45.46 4.85
113 114 1.153349 GGTCGGATTGAGTCCTGCC 60.153 63.158 0.00 0.00 45.46 4.85
114 115 1.596934 GTCGGATTGAGTCCTGCCA 59.403 57.895 0.00 0.00 45.46 4.92
115 116 0.179000 GTCGGATTGAGTCCTGCCAT 59.821 55.000 0.00 0.00 45.46 4.40
116 117 0.465705 TCGGATTGAGTCCTGCCATC 59.534 55.000 0.00 0.00 45.46 3.51
117 118 0.533755 CGGATTGAGTCCTGCCATCC 60.534 60.000 0.00 0.00 45.46 3.51
118 119 0.842635 GGATTGAGTCCTGCCATCCT 59.157 55.000 0.00 0.00 44.16 3.24
119 120 1.202746 GGATTGAGTCCTGCCATCCTC 60.203 57.143 0.00 0.00 44.16 3.71
120 121 1.767681 GATTGAGTCCTGCCATCCTCT 59.232 52.381 0.00 0.00 0.00 3.69
121 122 1.661463 TTGAGTCCTGCCATCCTCTT 58.339 50.000 0.00 0.00 0.00 2.85
122 123 0.907486 TGAGTCCTGCCATCCTCTTG 59.093 55.000 0.00 0.00 0.00 3.02
123 124 0.908198 GAGTCCTGCCATCCTCTTGT 59.092 55.000 0.00 0.00 0.00 3.16
124 125 0.908198 AGTCCTGCCATCCTCTTGTC 59.092 55.000 0.00 0.00 0.00 3.18
125 126 0.107459 GTCCTGCCATCCTCTTGTCC 60.107 60.000 0.00 0.00 0.00 4.02
126 127 0.252881 TCCTGCCATCCTCTTGTCCT 60.253 55.000 0.00 0.00 0.00 3.85
127 128 0.179936 CCTGCCATCCTCTTGTCCTC 59.820 60.000 0.00 0.00 0.00 3.71
128 129 1.202330 CTGCCATCCTCTTGTCCTCT 58.798 55.000 0.00 0.00 0.00 3.69
129 130 1.138661 CTGCCATCCTCTTGTCCTCTC 59.861 57.143 0.00 0.00 0.00 3.20
130 131 1.198713 GCCATCCTCTTGTCCTCTCA 58.801 55.000 0.00 0.00 0.00 3.27
131 132 1.767681 GCCATCCTCTTGTCCTCTCAT 59.232 52.381 0.00 0.00 0.00 2.90
132 133 2.485124 GCCATCCTCTTGTCCTCTCATG 60.485 54.545 0.00 0.00 0.00 3.07
133 134 2.104451 CCATCCTCTTGTCCTCTCATGG 59.896 54.545 0.00 0.00 0.00 3.66
134 135 1.871418 TCCTCTTGTCCTCTCATGGG 58.129 55.000 0.00 0.00 0.00 4.00
135 136 0.835941 CCTCTTGTCCTCTCATGGGG 59.164 60.000 0.00 0.00 0.00 4.96
136 137 0.835941 CTCTTGTCCTCTCATGGGGG 59.164 60.000 0.00 0.00 0.00 5.40
137 138 0.417437 TCTTGTCCTCTCATGGGGGA 59.583 55.000 0.00 0.00 0.00 4.81
138 139 1.010046 TCTTGTCCTCTCATGGGGGAT 59.990 52.381 0.00 0.00 0.00 3.85
139 140 1.142465 CTTGTCCTCTCATGGGGGATG 59.858 57.143 0.00 0.00 0.00 3.51
140 141 0.695462 TGTCCTCTCATGGGGGATGG 60.695 60.000 0.00 0.00 32.26 3.51
141 142 0.695803 GTCCTCTCATGGGGGATGGT 60.696 60.000 0.00 0.00 32.26 3.55
142 143 0.695462 TCCTCTCATGGGGGATGGTG 60.695 60.000 0.00 0.00 32.26 4.17
143 144 1.150081 CTCTCATGGGGGATGGTGC 59.850 63.158 0.00 0.00 32.26 5.01
144 145 1.619057 TCTCATGGGGGATGGTGCA 60.619 57.895 0.00 0.00 32.26 4.57
145 146 0.995132 TCTCATGGGGGATGGTGCAT 60.995 55.000 0.00 0.00 32.26 3.96
146 147 0.105862 CTCATGGGGGATGGTGCATT 60.106 55.000 0.00 0.00 32.26 3.56
147 148 0.397394 TCATGGGGGATGGTGCATTG 60.397 55.000 0.00 0.00 32.26 2.82
148 149 0.397394 CATGGGGGATGGTGCATTGA 60.397 55.000 0.00 0.00 0.00 2.57
149 150 0.397535 ATGGGGGATGGTGCATTGAC 60.398 55.000 0.00 0.00 0.00 3.18
150 151 1.000233 GGGGGATGGTGCATTGACA 60.000 57.895 0.00 0.00 0.00 3.58
151 152 0.614415 GGGGGATGGTGCATTGACAA 60.614 55.000 0.00 0.00 0.00 3.18
152 153 0.819582 GGGGATGGTGCATTGACAAG 59.180 55.000 0.00 0.00 0.00 3.16
153 154 0.819582 GGGATGGTGCATTGACAAGG 59.180 55.000 0.00 0.00 0.00 3.61
154 155 1.616725 GGGATGGTGCATTGACAAGGA 60.617 52.381 3.57 0.00 0.00 3.36
155 156 2.170166 GGATGGTGCATTGACAAGGAA 58.830 47.619 3.57 0.00 0.00 3.36
156 157 2.562298 GGATGGTGCATTGACAAGGAAA 59.438 45.455 3.57 0.00 0.00 3.13
157 158 3.367703 GGATGGTGCATTGACAAGGAAAG 60.368 47.826 3.57 0.00 0.00 2.62
158 159 1.340889 TGGTGCATTGACAAGGAAAGC 59.659 47.619 3.57 1.46 0.00 3.51
159 160 1.615392 GGTGCATTGACAAGGAAAGCT 59.385 47.619 3.57 0.00 0.00 3.74
160 161 2.036346 GGTGCATTGACAAGGAAAGCTT 59.964 45.455 3.57 0.00 0.00 3.74
161 162 3.054878 GTGCATTGACAAGGAAAGCTTG 58.945 45.455 0.00 0.00 37.77 4.01
162 163 2.036217 TGCATTGACAAGGAAAGCTTGG 59.964 45.455 0.00 0.00 36.23 3.61
163 164 2.297033 GCATTGACAAGGAAAGCTTGGA 59.703 45.455 0.00 0.00 36.23 3.53
164 165 3.613432 GCATTGACAAGGAAAGCTTGGAG 60.613 47.826 0.00 0.00 36.23 3.86
165 166 2.276732 TGACAAGGAAAGCTTGGAGG 57.723 50.000 0.00 0.00 36.23 4.30
166 167 1.202927 TGACAAGGAAAGCTTGGAGGG 60.203 52.381 0.00 0.00 36.23 4.30
167 168 1.073923 GACAAGGAAAGCTTGGAGGGA 59.926 52.381 0.00 0.00 36.23 4.20
168 169 1.074566 ACAAGGAAAGCTTGGAGGGAG 59.925 52.381 0.00 0.00 36.23 4.30
169 170 0.038890 AAGGAAAGCTTGGAGGGAGC 59.961 55.000 0.00 0.00 40.43 4.70
170 171 1.746991 GGAAAGCTTGGAGGGAGCG 60.747 63.158 0.00 0.00 44.71 5.03
171 172 1.746991 GAAAGCTTGGAGGGAGCGG 60.747 63.158 0.00 0.00 44.71 5.52
172 173 3.927481 AAAGCTTGGAGGGAGCGGC 62.927 63.158 0.00 0.00 44.71 6.53
179 180 4.083862 GAGGGAGCGGCCGTTCTT 62.084 66.667 35.83 25.90 37.63 2.52
180 181 3.607370 GAGGGAGCGGCCGTTCTTT 62.607 63.158 35.83 25.57 37.63 2.52
181 182 3.431725 GGGAGCGGCCGTTCTTTG 61.432 66.667 35.83 4.45 37.63 2.77
182 183 3.431725 GGAGCGGCCGTTCTTTGG 61.432 66.667 35.83 3.65 0.00 3.28
183 184 2.358247 GAGCGGCCGTTCTTTGGA 60.358 61.111 31.80 0.00 0.00 3.53
184 185 2.358737 AGCGGCCGTTCTTTGGAG 60.359 61.111 28.70 0.00 0.00 3.86
185 186 3.431725 GCGGCCGTTCTTTGGAGG 61.432 66.667 28.70 0.00 0.00 4.30
186 187 2.032071 CGGCCGTTCTTTGGAGGT 59.968 61.111 19.50 0.00 0.00 3.85
187 188 2.325082 CGGCCGTTCTTTGGAGGTG 61.325 63.158 19.50 0.00 0.00 4.00
188 189 1.072505 GGCCGTTCTTTGGAGGTGA 59.927 57.895 0.00 0.00 0.00 4.02
189 190 1.235281 GGCCGTTCTTTGGAGGTGAC 61.235 60.000 0.00 0.00 0.00 3.67
190 191 1.235281 GCCGTTCTTTGGAGGTGACC 61.235 60.000 0.00 0.00 0.00 4.02
191 192 0.949105 CCGTTCTTTGGAGGTGACCG 60.949 60.000 0.00 0.00 0.00 4.79
192 193 0.949105 CGTTCTTTGGAGGTGACCGG 60.949 60.000 0.00 0.00 0.00 5.28
193 194 1.072505 TTCTTTGGAGGTGACCGGC 59.927 57.895 0.00 0.00 0.00 6.13
194 195 2.725203 TTCTTTGGAGGTGACCGGCG 62.725 60.000 0.00 0.00 0.00 6.46
195 196 3.530910 CTTTGGAGGTGACCGGCGT 62.531 63.158 6.01 0.00 0.00 5.68
196 197 3.524648 TTTGGAGGTGACCGGCGTC 62.525 63.158 6.01 4.26 39.66 5.19
215 216 4.755614 GTCGAGACGCGGCGAGTT 62.756 66.667 30.94 13.44 41.33 3.01
216 217 4.034258 TCGAGACGCGGCGAGTTT 62.034 61.111 30.94 12.86 41.33 2.66
217 218 3.103911 CGAGACGCGGCGAGTTTT 61.104 61.111 30.94 9.61 36.03 2.43
218 219 2.770259 GAGACGCGGCGAGTTTTC 59.230 61.111 30.94 15.56 0.00 2.29
220 221 4.130281 GACGCGGCGAGTTTTCGG 62.130 66.667 30.94 0.00 46.76 4.30
221 222 4.955774 ACGCGGCGAGTTTTCGGT 62.956 61.111 30.94 0.00 46.76 4.69
222 223 3.708734 CGCGGCGAGTTTTCGGTT 61.709 61.111 19.16 0.00 46.76 4.44
223 224 2.635338 GCGGCGAGTTTTCGGTTT 59.365 55.556 12.98 0.00 46.76 3.27
224 225 1.009335 GCGGCGAGTTTTCGGTTTT 60.009 52.632 12.98 0.00 46.76 2.43
225 226 1.266124 GCGGCGAGTTTTCGGTTTTG 61.266 55.000 12.98 0.00 46.76 2.44
226 227 0.659123 CGGCGAGTTTTCGGTTTTGG 60.659 55.000 0.00 0.00 46.76 3.28
227 228 0.664224 GGCGAGTTTTCGGTTTTGGA 59.336 50.000 0.00 0.00 46.76 3.53
228 229 1.334689 GGCGAGTTTTCGGTTTTGGAG 60.335 52.381 0.00 0.00 46.76 3.86
229 230 1.600485 GCGAGTTTTCGGTTTTGGAGA 59.400 47.619 0.00 0.00 46.76 3.71
230 231 2.349532 GCGAGTTTTCGGTTTTGGAGAG 60.350 50.000 0.00 0.00 46.76 3.20
231 232 2.223377 CGAGTTTTCGGTTTTGGAGAGG 59.777 50.000 0.00 0.00 43.05 3.69
232 233 1.954382 AGTTTTCGGTTTTGGAGAGGC 59.046 47.619 0.00 0.00 0.00 4.70
233 234 1.954382 GTTTTCGGTTTTGGAGAGGCT 59.046 47.619 0.00 0.00 0.00 4.58
234 235 2.358322 TTTCGGTTTTGGAGAGGCTT 57.642 45.000 0.00 0.00 0.00 4.35
235 236 2.358322 TTCGGTTTTGGAGAGGCTTT 57.642 45.000 0.00 0.00 0.00 3.51
236 237 2.358322 TCGGTTTTGGAGAGGCTTTT 57.642 45.000 0.00 0.00 0.00 2.27
237 238 2.661718 TCGGTTTTGGAGAGGCTTTTT 58.338 42.857 0.00 0.00 0.00 1.94
238 239 2.360801 TCGGTTTTGGAGAGGCTTTTTG 59.639 45.455 0.00 0.00 0.00 2.44
239 240 2.483876 GGTTTTGGAGAGGCTTTTTGC 58.516 47.619 0.00 0.00 41.94 3.68
240 241 2.127251 GTTTTGGAGAGGCTTTTTGCG 58.873 47.619 0.00 0.00 44.05 4.85
241 242 1.398692 TTTGGAGAGGCTTTTTGCGT 58.601 45.000 0.00 0.00 44.05 5.24
242 243 1.398692 TTGGAGAGGCTTTTTGCGTT 58.601 45.000 0.00 0.00 44.05 4.84
243 244 0.667993 TGGAGAGGCTTTTTGCGTTG 59.332 50.000 0.00 0.00 44.05 4.10
244 245 0.668535 GGAGAGGCTTTTTGCGTTGT 59.331 50.000 0.00 0.00 44.05 3.32
245 246 1.600413 GGAGAGGCTTTTTGCGTTGTG 60.600 52.381 0.00 0.00 44.05 3.33
246 247 0.385390 AGAGGCTTTTTGCGTTGTGG 59.615 50.000 0.00 0.00 44.05 4.17
247 248 0.102300 GAGGCTTTTTGCGTTGTGGT 59.898 50.000 0.00 0.00 44.05 4.16
248 249 0.534873 AGGCTTTTTGCGTTGTGGTT 59.465 45.000 0.00 0.00 44.05 3.67
249 250 0.649993 GGCTTTTTGCGTTGTGGTTG 59.350 50.000 0.00 0.00 44.05 3.77
250 251 1.355005 GCTTTTTGCGTTGTGGTTGT 58.645 45.000 0.00 0.00 0.00 3.32
251 252 1.060409 GCTTTTTGCGTTGTGGTTGTG 59.940 47.619 0.00 0.00 0.00 3.33
252 253 2.333014 CTTTTTGCGTTGTGGTTGTGT 58.667 42.857 0.00 0.00 0.00 3.72
253 254 2.440539 TTTTGCGTTGTGGTTGTGTT 57.559 40.000 0.00 0.00 0.00 3.32
254 255 1.702886 TTTGCGTTGTGGTTGTGTTG 58.297 45.000 0.00 0.00 0.00 3.33
255 256 0.598562 TTGCGTTGTGGTTGTGTTGT 59.401 45.000 0.00 0.00 0.00 3.32
256 257 0.598562 TGCGTTGTGGTTGTGTTGTT 59.401 45.000 0.00 0.00 0.00 2.83
257 258 0.988439 GCGTTGTGGTTGTGTTGTTG 59.012 50.000 0.00 0.00 0.00 3.33
258 259 1.667467 GCGTTGTGGTTGTGTTGTTGT 60.667 47.619 0.00 0.00 0.00 3.32
259 260 1.982223 CGTTGTGGTTGTGTTGTTGTG 59.018 47.619 0.00 0.00 0.00 3.33
260 261 2.333014 GTTGTGGTTGTGTTGTTGTGG 58.667 47.619 0.00 0.00 0.00 4.17
261 262 1.911057 TGTGGTTGTGTTGTTGTGGA 58.089 45.000 0.00 0.00 0.00 4.02
262 263 2.451490 TGTGGTTGTGTTGTTGTGGAT 58.549 42.857 0.00 0.00 0.00 3.41
263 264 2.165234 TGTGGTTGTGTTGTTGTGGATG 59.835 45.455 0.00 0.00 0.00 3.51
264 265 1.753649 TGGTTGTGTTGTTGTGGATGG 59.246 47.619 0.00 0.00 0.00 3.51
265 266 1.537990 GGTTGTGTTGTTGTGGATGGC 60.538 52.381 0.00 0.00 0.00 4.40
266 267 1.408702 GTTGTGTTGTTGTGGATGGCT 59.591 47.619 0.00 0.00 0.00 4.75
267 268 1.031235 TGTGTTGTTGTGGATGGCTG 58.969 50.000 0.00 0.00 0.00 4.85
268 269 1.032014 GTGTTGTTGTGGATGGCTGT 58.968 50.000 0.00 0.00 0.00 4.40
269 270 1.001378 GTGTTGTTGTGGATGGCTGTC 60.001 52.381 0.00 0.00 0.00 3.51
270 271 0.598065 GTTGTTGTGGATGGCTGTCC 59.402 55.000 3.00 3.00 38.81 4.02
271 272 0.478072 TTGTTGTGGATGGCTGTCCT 59.522 50.000 10.17 0.00 39.12 3.85
272 273 0.478072 TGTTGTGGATGGCTGTCCTT 59.522 50.000 10.17 0.00 39.12 3.36
273 274 0.883833 GTTGTGGATGGCTGTCCTTG 59.116 55.000 10.17 0.00 39.12 3.61
274 275 0.251297 TTGTGGATGGCTGTCCTTGG 60.251 55.000 10.17 0.00 39.12 3.61
275 276 1.133181 TGTGGATGGCTGTCCTTGGA 61.133 55.000 10.17 0.00 39.12 3.53
276 277 0.678048 GTGGATGGCTGTCCTTGGAC 60.678 60.000 12.54 12.54 39.12 4.02
277 278 0.842030 TGGATGGCTGTCCTTGGACT 60.842 55.000 19.11 0.13 39.12 3.85
278 279 1.204146 GGATGGCTGTCCTTGGACTA 58.796 55.000 19.11 6.57 35.32 2.59
279 280 1.139853 GGATGGCTGTCCTTGGACTAG 59.860 57.143 19.11 15.06 35.32 2.57
280 281 0.543749 ATGGCTGTCCTTGGACTAGC 59.456 55.000 23.40 23.40 0.00 3.42
281 282 1.222113 GGCTGTCCTTGGACTAGCC 59.778 63.158 29.17 29.17 39.87 3.93
282 283 1.153549 GCTGTCCTTGGACTAGCCG 60.154 63.158 22.10 9.47 40.66 5.52
283 284 1.517832 CTGTCCTTGGACTAGCCGG 59.482 63.158 19.11 0.00 40.66 6.13
284 285 1.229082 TGTCCTTGGACTAGCCGGT 60.229 57.895 19.11 0.00 40.66 5.28
285 286 0.834687 TGTCCTTGGACTAGCCGGTT 60.835 55.000 19.11 0.00 40.66 4.44
286 287 0.391263 GTCCTTGGACTAGCCGGTTG 60.391 60.000 12.20 0.00 40.66 3.77
287 288 0.834687 TCCTTGGACTAGCCGGTTGT 60.835 55.000 1.90 0.00 40.66 3.32
288 289 0.673644 CCTTGGACTAGCCGGTTGTG 60.674 60.000 1.90 0.00 40.66 3.33
289 290 0.673644 CTTGGACTAGCCGGTTGTGG 60.674 60.000 1.90 0.00 40.66 4.17
290 291 1.122632 TTGGACTAGCCGGTTGTGGA 61.123 55.000 1.90 0.00 40.66 4.02
291 292 1.218316 GGACTAGCCGGTTGTGGAG 59.782 63.158 1.90 0.00 0.00 3.86
292 293 1.542187 GGACTAGCCGGTTGTGGAGT 61.542 60.000 1.90 0.00 0.00 3.85
293 294 0.320697 GACTAGCCGGTTGTGGAGTT 59.679 55.000 1.90 0.00 0.00 3.01
294 295 0.034896 ACTAGCCGGTTGTGGAGTTG 59.965 55.000 1.90 0.00 0.00 3.16
295 296 0.034896 CTAGCCGGTTGTGGAGTTGT 59.965 55.000 1.90 0.00 0.00 3.32
296 297 0.250124 TAGCCGGTTGTGGAGTTGTG 60.250 55.000 1.90 0.00 0.00 3.33
297 298 3.030652 CCGGTTGTGGAGTTGTGC 58.969 61.111 0.00 0.00 0.00 4.57
298 299 1.525995 CCGGTTGTGGAGTTGTGCT 60.526 57.895 0.00 0.00 0.00 4.40
299 300 0.250124 CCGGTTGTGGAGTTGTGCTA 60.250 55.000 0.00 0.00 0.00 3.49
300 301 0.865769 CGGTTGTGGAGTTGTGCTAC 59.134 55.000 0.00 0.00 0.00 3.58
301 302 0.865769 GGTTGTGGAGTTGTGCTACG 59.134 55.000 0.00 0.00 0.00 3.51
302 303 0.234884 GTTGTGGAGTTGTGCTACGC 59.765 55.000 0.00 0.00 39.01 4.42
303 304 0.105964 TTGTGGAGTTGTGCTACGCT 59.894 50.000 0.00 0.00 39.29 5.07
304 305 0.319555 TGTGGAGTTGTGCTACGCTC 60.320 55.000 0.00 0.00 39.29 5.03
305 306 1.080772 TGGAGTTGTGCTACGCTCG 60.081 57.895 0.00 0.00 0.00 5.03
306 307 1.080705 GGAGTTGTGCTACGCTCGT 60.081 57.895 0.00 0.00 0.00 4.18
307 308 0.666577 GGAGTTGTGCTACGCTCGTT 60.667 55.000 0.00 0.00 0.00 3.85
308 309 0.435008 GAGTTGTGCTACGCTCGTTG 59.565 55.000 0.00 0.00 0.00 4.10
309 310 1.154654 GTTGTGCTACGCTCGTTGC 60.155 57.895 18.77 18.77 44.67 4.17
310 311 1.300620 TTGTGCTACGCTCGTTGCT 60.301 52.632 23.80 0.00 44.70 3.91
311 312 1.282248 TTGTGCTACGCTCGTTGCTC 61.282 55.000 23.80 21.04 44.70 4.26
312 313 2.504026 TGCTACGCTCGTTGCTCG 60.504 61.111 23.80 0.00 44.70 5.03
313 314 3.903207 GCTACGCTCGTTGCTCGC 61.903 66.667 18.44 3.88 42.04 5.03
314 315 2.504026 CTACGCTCGTTGCTCGCA 60.504 61.111 0.00 0.00 40.11 5.10
315 316 2.500442 CTACGCTCGTTGCTCGCAG 61.500 63.158 0.00 0.00 40.11 5.18
325 326 3.479370 GCTCGCAGCAAGTGGTAG 58.521 61.111 0.00 0.00 41.89 3.18
326 327 2.744768 GCTCGCAGCAAGTGGTAGC 61.745 63.158 0.00 0.00 41.89 3.58
328 329 2.738521 CGCAGCAAGTGGTAGCGT 60.739 61.111 14.70 0.00 43.08 5.07
329 330 2.730672 CGCAGCAAGTGGTAGCGTC 61.731 63.158 14.70 0.00 43.08 5.19
330 331 1.374758 GCAGCAAGTGGTAGCGTCT 60.375 57.895 0.00 0.00 35.48 4.18
331 332 0.951040 GCAGCAAGTGGTAGCGTCTT 60.951 55.000 0.00 0.00 35.48 3.01
332 333 0.792640 CAGCAAGTGGTAGCGTCTTG 59.207 55.000 18.74 18.74 40.71 3.02
333 334 0.393077 AGCAAGTGGTAGCGTCTTGT 59.607 50.000 21.69 11.80 40.14 3.16
334 335 1.616865 AGCAAGTGGTAGCGTCTTGTA 59.383 47.619 21.69 0.00 40.14 2.41
335 336 1.725164 GCAAGTGGTAGCGTCTTGTAC 59.275 52.381 21.69 9.73 40.14 2.90
336 337 2.609737 GCAAGTGGTAGCGTCTTGTACT 60.610 50.000 21.69 3.15 40.14 2.73
337 338 3.650139 CAAGTGGTAGCGTCTTGTACTT 58.350 45.455 16.32 4.30 35.34 2.24
338 339 4.801891 CAAGTGGTAGCGTCTTGTACTTA 58.198 43.478 16.32 0.00 35.34 2.24
339 340 5.224888 CAAGTGGTAGCGTCTTGTACTTAA 58.775 41.667 16.32 0.00 35.34 1.85
340 341 5.656213 AGTGGTAGCGTCTTGTACTTAAT 57.344 39.130 0.00 0.00 0.00 1.40
341 342 6.764308 AGTGGTAGCGTCTTGTACTTAATA 57.236 37.500 0.00 0.00 0.00 0.98
342 343 7.344095 AGTGGTAGCGTCTTGTACTTAATAT 57.656 36.000 0.00 0.00 0.00 1.28
343 344 7.779073 AGTGGTAGCGTCTTGTACTTAATATT 58.221 34.615 0.00 0.00 0.00 1.28
344 345 7.919621 AGTGGTAGCGTCTTGTACTTAATATTC 59.080 37.037 0.00 0.00 0.00 1.75
345 346 7.919621 GTGGTAGCGTCTTGTACTTAATATTCT 59.080 37.037 0.00 0.00 0.00 2.40
346 347 8.472413 TGGTAGCGTCTTGTACTTAATATTCTT 58.528 33.333 0.00 0.00 0.00 2.52
347 348 9.310716 GGTAGCGTCTTGTACTTAATATTCTTT 57.689 33.333 0.00 0.00 0.00 2.52
350 351 9.654663 AGCGTCTTGTACTTAATATTCTTTTCT 57.345 29.630 0.00 0.00 0.00 2.52
378 379 9.887189 CTATAAAGCTATGATACGTAATTTGCG 57.113 33.333 0.00 5.30 0.00 4.85
379 380 6.598753 AAAGCTATGATACGTAATTTGCGT 57.401 33.333 16.46 16.46 45.11 5.24
380 381 7.703298 AAAGCTATGATACGTAATTTGCGTA 57.297 32.000 19.46 19.46 46.63 4.42
381 382 6.686130 AGCTATGATACGTAATTTGCGTAC 57.314 37.500 19.55 14.21 45.64 3.67
382 383 6.444633 AGCTATGATACGTAATTTGCGTACT 58.555 36.000 19.55 9.92 45.64 2.73
383 384 6.581542 AGCTATGATACGTAATTTGCGTACTC 59.418 38.462 19.55 17.06 45.64 2.59
384 385 6.581542 GCTATGATACGTAATTTGCGTACTCT 59.418 38.462 19.55 6.62 45.64 3.24
385 386 6.988109 ATGATACGTAATTTGCGTACTCTC 57.012 37.500 19.55 14.42 45.64 3.20
386 387 4.965762 TGATACGTAATTTGCGTACTCTCG 59.034 41.667 19.55 0.00 45.64 4.04
387 388 3.476295 ACGTAATTTGCGTACTCTCGA 57.524 42.857 10.88 0.00 41.06 4.04
388 389 3.825308 ACGTAATTTGCGTACTCTCGAA 58.175 40.909 10.88 0.00 41.06 3.71
389 390 4.229096 ACGTAATTTGCGTACTCTCGAAA 58.771 39.130 10.88 0.00 41.06 3.46
390 391 4.681025 ACGTAATTTGCGTACTCTCGAAAA 59.319 37.500 10.88 0.00 41.60 2.29
391 392 5.175491 ACGTAATTTGCGTACTCTCGAAAAA 59.825 36.000 10.88 0.00 40.89 1.94
467 468 3.005791 CCAAACAAACAGGGCTTAAGAGG 59.994 47.826 6.67 0.00 0.00 3.69
510 511 6.071391 ACTCAAGTTTTGTGACATGTTTTCCT 60.071 34.615 0.00 0.00 0.00 3.36
516 517 6.639671 TTTGTGACATGTTTTCCTTTTTCG 57.360 33.333 0.00 0.00 0.00 3.46
538 539 5.356751 TCGAAATAGTGTGGCTAAAATGCAT 59.643 36.000 0.00 0.00 32.72 3.96
568 569 3.180584 CACGAGCGTCATTTACTCATAGC 59.819 47.826 0.00 0.00 0.00 2.97
573 574 6.111768 AGCGTCATTTACTCATAGCTTTTG 57.888 37.500 0.00 0.00 0.00 2.44
585 586 7.315890 ACTCATAGCTTTTGTATTCCTTTTGC 58.684 34.615 0.00 0.00 0.00 3.68
588 589 7.394359 TCATAGCTTTTGTATTCCTTTTGCTCT 59.606 33.333 0.00 0.00 0.00 4.09
703 715 9.047871 GTTCGTATTGAAATCCTTAAAAAGACG 57.952 33.333 0.00 0.00 38.60 4.18
704 716 8.537049 TCGTATTGAAATCCTTAAAAAGACGA 57.463 30.769 0.00 0.00 0.00 4.20
720 732 8.767478 AAAAAGACGAATATCTAGAAACGGAA 57.233 30.769 0.00 0.00 0.00 4.30
750 762 2.526304 TCATTGCACCGACCTATAGC 57.474 50.000 0.00 0.00 0.00 2.97
758 770 1.141657 ACCGACCTATAGCCACGACTA 59.858 52.381 11.14 0.00 0.00 2.59
765 777 5.688807 ACCTATAGCCACGACTAAAGACTA 58.311 41.667 0.00 0.00 0.00 2.59
855 867 4.948004 GCTGGTATAGGTGCTAAAAGGTTT 59.052 41.667 0.00 0.00 0.00 3.27
927 950 3.431922 AGGTACACGGATCACATTACG 57.568 47.619 0.00 0.00 0.00 3.18
934 957 0.529773 GGATCACATTACGGCAGCGA 60.530 55.000 0.00 0.00 0.00 4.93
965 988 3.127533 CTAACAGCCGGGCAGCAC 61.128 66.667 23.09 0.00 34.23 4.40
966 989 3.899981 CTAACAGCCGGGCAGCACA 62.900 63.158 23.09 0.85 34.23 4.57
1055 1079 1.001020 ATCTGGTGGCGCAATCCAA 60.001 52.632 10.83 6.00 37.96 3.53
1158 1182 1.144565 CGCTCATCGACCTGAAGCAG 61.145 60.000 0.00 0.00 41.67 4.24
1238 1262 3.328505 ACGGGTTTTTCATGGTACGTAG 58.671 45.455 0.00 0.00 0.00 3.51
1269 1293 3.125316 CCGCTTGTTGAGACCAGTTAATC 59.875 47.826 0.00 0.00 0.00 1.75
1659 1684 1.670674 GGATGAACTTCCGTACGTGCA 60.671 52.381 15.21 0.01 0.00 4.57
1664 1689 2.730672 CTTCCGTACGTGCAGCTGC 61.731 63.158 31.89 31.89 42.50 5.25
1734 1759 6.963049 AGCCTACGACTTTTAATACTGTTG 57.037 37.500 0.00 0.00 0.00 3.33
1740 1765 5.934043 ACGACTTTTAATACTGTTGGTACCC 59.066 40.000 10.07 0.00 32.72 3.69
1768 1793 2.011222 CTTTCAATACGGCCCGCTAAA 58.989 47.619 1.23 0.00 0.00 1.85
1852 1878 1.238439 GACAGGCTAGCTGTTGCAAA 58.762 50.000 15.72 0.00 42.74 3.68
1890 1916 9.930693 ACAGTATAACAGAAAGTAGGAGAAAAG 57.069 33.333 0.00 0.00 0.00 2.27
1947 1973 5.006746 GGCAGACTGATAGGTGTATTTTTCG 59.993 44.000 6.65 0.00 0.00 3.46
1954 1980 6.884832 TGATAGGTGTATTTTTCGGTGAGAT 58.115 36.000 0.00 0.00 0.00 2.75
1955 1981 7.335627 TGATAGGTGTATTTTTCGGTGAGATT 58.664 34.615 0.00 0.00 0.00 2.40
1956 1982 5.880054 AGGTGTATTTTTCGGTGAGATTG 57.120 39.130 0.00 0.00 0.00 2.67
1957 1983 5.556915 AGGTGTATTTTTCGGTGAGATTGA 58.443 37.500 0.00 0.00 0.00 2.57
1958 1984 5.643777 AGGTGTATTTTTCGGTGAGATTGAG 59.356 40.000 0.00 0.00 0.00 3.02
1959 1985 5.411669 GGTGTATTTTTCGGTGAGATTGAGT 59.588 40.000 0.00 0.00 0.00 3.41
1960 1986 6.072673 GGTGTATTTTTCGGTGAGATTGAGTT 60.073 38.462 0.00 0.00 0.00 3.01
1961 1987 7.015877 GTGTATTTTTCGGTGAGATTGAGTTC 58.984 38.462 0.00 0.00 0.00 3.01
2308 2337 1.723870 GCTGGTCATCAACATCGGC 59.276 57.895 0.00 0.00 0.00 5.54
2441 2470 2.125106 GTGCTCCACCGGGTGATC 60.125 66.667 28.36 15.84 35.23 2.92
2735 2764 0.616395 TGTGTCGCCATAGGGGAAGA 60.616 55.000 4.25 0.00 45.99 2.87
2789 3141 9.823647 ATATAGTTTTGGATGGCTATAAGATCG 57.176 33.333 0.00 0.00 32.35 3.69
2840 3192 3.858135 ACTTCAGTTCTCCCTGACCTTA 58.142 45.455 0.00 0.00 41.05 2.69
2841 3193 3.835395 ACTTCAGTTCTCCCTGACCTTAG 59.165 47.826 0.00 0.00 41.05 2.18
2846 3198 3.097614 GTTCTCCCTGACCTTAGCACTA 58.902 50.000 0.00 0.00 0.00 2.74
2866 3218 1.134560 AGAGATACGACCGGTGCTTTC 59.865 52.381 14.63 3.68 0.00 2.62
2878 3230 4.825085 ACCGGTGCTTTCATAAAAGAAGAA 59.175 37.500 6.12 0.00 43.90 2.52
2879 3231 5.048713 ACCGGTGCTTTCATAAAAGAAGAAG 60.049 40.000 6.12 0.00 43.90 2.85
2880 3232 5.181245 CCGGTGCTTTCATAAAAGAAGAAGA 59.819 40.000 0.00 0.00 43.90 2.87
2883 3235 6.529477 GGTGCTTTCATAAAAGAAGAAGATGC 59.471 38.462 0.00 0.00 43.90 3.91
3017 3428 4.936891 ACCATCCGGATTTACGTAACTAC 58.063 43.478 16.19 2.29 35.59 2.73
3018 3429 4.646492 ACCATCCGGATTTACGTAACTACT 59.354 41.667 16.19 0.00 35.59 2.57
3019 3430 5.218139 CCATCCGGATTTACGTAACTACTC 58.782 45.833 16.19 3.01 0.00 2.59
3020 3431 4.900635 TCCGGATTTACGTAACTACTCC 57.099 45.455 7.70 10.67 0.00 3.85
3021 3432 3.632145 TCCGGATTTACGTAACTACTCCC 59.368 47.826 7.70 0.00 0.00 4.30
3022 3433 3.633986 CCGGATTTACGTAACTACTCCCT 59.366 47.826 7.70 0.00 0.00 4.20
3023 3434 4.261363 CCGGATTTACGTAACTACTCCCTC 60.261 50.000 7.70 0.00 0.00 4.30
3024 3435 4.578105 CGGATTTACGTAACTACTCCCTCT 59.422 45.833 7.70 0.00 0.00 3.69
3025 3436 5.505324 CGGATTTACGTAACTACTCCCTCTG 60.505 48.000 7.70 0.00 0.00 3.35
3026 3437 5.359292 GGATTTACGTAACTACTCCCTCTGT 59.641 44.000 7.70 0.00 0.00 3.41
3027 3438 5.886960 TTTACGTAACTACTCCCTCTGTC 57.113 43.478 7.70 0.00 0.00 3.51
3028 3439 3.717452 ACGTAACTACTCCCTCTGTCT 57.283 47.619 0.00 0.00 0.00 3.41
3029 3440 3.345414 ACGTAACTACTCCCTCTGTCTG 58.655 50.000 0.00 0.00 0.00 3.51
3030 3441 3.008813 ACGTAACTACTCCCTCTGTCTGA 59.991 47.826 0.00 0.00 0.00 3.27
3031 3442 4.008330 CGTAACTACTCCCTCTGTCTGAA 58.992 47.826 0.00 0.00 0.00 3.02
3032 3443 4.458295 CGTAACTACTCCCTCTGTCTGAAA 59.542 45.833 0.00 0.00 0.00 2.69
3033 3444 5.048224 CGTAACTACTCCCTCTGTCTGAAAA 60.048 44.000 0.00 0.00 0.00 2.29
3034 3445 5.888982 AACTACTCCCTCTGTCTGAAAAA 57.111 39.130 0.00 0.00 0.00 1.94
3035 3446 5.476091 ACTACTCCCTCTGTCTGAAAAAG 57.524 43.478 0.00 0.00 0.00 2.27
3036 3447 3.778954 ACTCCCTCTGTCTGAAAAAGG 57.221 47.619 0.00 0.00 0.00 3.11
3037 3448 3.049344 ACTCCCTCTGTCTGAAAAAGGT 58.951 45.455 0.00 0.00 0.00 3.50
3038 3449 3.459969 ACTCCCTCTGTCTGAAAAAGGTT 59.540 43.478 0.00 0.00 0.00 3.50
3039 3450 3.817647 CTCCCTCTGTCTGAAAAAGGTTG 59.182 47.826 0.00 0.00 0.00 3.77
3040 3451 3.202151 TCCCTCTGTCTGAAAAAGGTTGT 59.798 43.478 0.00 0.00 0.00 3.32
3041 3452 3.565902 CCCTCTGTCTGAAAAAGGTTGTC 59.434 47.826 0.00 0.00 0.00 3.18
3042 3453 3.565902 CCTCTGTCTGAAAAAGGTTGTCC 59.434 47.826 0.00 0.00 0.00 4.02
3043 3454 3.551846 TCTGTCTGAAAAAGGTTGTCCC 58.448 45.455 0.00 0.00 0.00 4.46
3045 3456 3.551846 TGTCTGAAAAAGGTTGTCCCTC 58.448 45.455 0.00 0.00 45.47 4.30
3046 3457 3.053991 TGTCTGAAAAAGGTTGTCCCTCA 60.054 43.478 0.00 0.00 45.47 3.86
3047 3458 3.951680 GTCTGAAAAAGGTTGTCCCTCAA 59.048 43.478 0.00 0.00 45.47 3.02
3048 3459 4.401202 GTCTGAAAAAGGTTGTCCCTCAAA 59.599 41.667 0.00 0.00 45.47 2.69
3049 3460 5.069119 GTCTGAAAAAGGTTGTCCCTCAAAT 59.931 40.000 0.00 0.00 45.47 2.32
3050 3461 5.068987 TCTGAAAAAGGTTGTCCCTCAAATG 59.931 40.000 0.00 0.00 45.47 2.32
3051 3462 4.959210 TGAAAAAGGTTGTCCCTCAAATGA 59.041 37.500 0.00 0.00 45.47 2.57
3052 3463 5.423610 TGAAAAAGGTTGTCCCTCAAATGAA 59.576 36.000 0.00 0.00 45.47 2.57
3053 3464 6.099557 TGAAAAAGGTTGTCCCTCAAATGAAT 59.900 34.615 0.00 0.00 45.47 2.57
3054 3465 5.473066 AAAGGTTGTCCCTCAAATGAATG 57.527 39.130 0.00 0.00 45.47 2.67
3055 3466 4.118168 AGGTTGTCCCTCAAATGAATGT 57.882 40.909 0.00 0.00 40.71 2.71
3056 3467 5.255397 AGGTTGTCCCTCAAATGAATGTA 57.745 39.130 0.00 0.00 40.71 2.29
3057 3468 5.831103 AGGTTGTCCCTCAAATGAATGTAT 58.169 37.500 0.00 0.00 40.71 2.29
3058 3469 5.888161 AGGTTGTCCCTCAAATGAATGTATC 59.112 40.000 0.00 0.00 40.71 2.24
3059 3470 5.888161 GGTTGTCCCTCAAATGAATGTATCT 59.112 40.000 0.00 0.00 37.81 1.98
3060 3471 7.054124 GGTTGTCCCTCAAATGAATGTATCTA 58.946 38.462 0.00 0.00 37.81 1.98
3061 3472 7.227512 GGTTGTCCCTCAAATGAATGTATCTAG 59.772 40.741 0.00 0.00 37.81 2.43
3062 3473 6.291377 TGTCCCTCAAATGAATGTATCTAGC 58.709 40.000 0.00 0.00 0.00 3.42
3063 3474 6.126796 TGTCCCTCAAATGAATGTATCTAGCA 60.127 38.462 0.00 0.00 0.00 3.49
3064 3475 6.939163 GTCCCTCAAATGAATGTATCTAGCAT 59.061 38.462 0.00 0.00 0.00 3.79
3065 3476 7.118971 GTCCCTCAAATGAATGTATCTAGCATC 59.881 40.741 0.00 0.00 0.00 3.91
3066 3477 6.938596 CCCTCAAATGAATGTATCTAGCATCA 59.061 38.462 0.00 0.00 0.00 3.07
3067 3478 7.446319 CCCTCAAATGAATGTATCTAGCATCAA 59.554 37.037 0.00 0.00 0.00 2.57
3068 3479 8.843262 CCTCAAATGAATGTATCTAGCATCAAA 58.157 33.333 0.00 0.00 0.00 2.69
3075 3486 9.836864 TGAATGTATCTAGCATCAAATTAGTGT 57.163 29.630 0.00 0.00 0.00 3.55
3165 3594 2.480416 CGAGGATACCTTCTGTCAGTGC 60.480 54.545 0.00 0.00 31.76 4.40
3208 3637 2.151202 GCGATTGACCACCTTCAGAAA 58.849 47.619 0.00 0.00 0.00 2.52
3239 3668 0.103026 GGCCGGCCAGAAATGATTTC 59.897 55.000 40.73 9.82 39.96 2.17
3351 3780 3.485546 GCTAGGCTATATCGTGTCGCTAC 60.486 52.174 0.00 0.00 0.00 3.58
3354 3783 2.225963 GGCTATATCGTGTCGCTACAGT 59.774 50.000 0.00 0.00 35.91 3.55
3359 3788 0.949397 TCGTGTCGCTACAGTGAACT 59.051 50.000 0.00 0.00 35.91 3.01
3391 3820 7.383102 ACTGATTTCATTTAGCGAGACATTT 57.617 32.000 0.00 0.00 0.00 2.32
3423 3852 1.315690 TAGCGTGCTATTAGCGGAGT 58.684 50.000 10.94 0.00 46.26 3.85
3434 3863 2.148446 TAGCGGAGTTAGGGTGCTAA 57.852 50.000 0.00 0.00 35.38 3.09
3436 3865 2.674420 AGCGGAGTTAGGGTGCTAATA 58.326 47.619 0.00 0.00 33.37 0.98
3439 3868 3.995048 GCGGAGTTAGGGTGCTAATATTC 59.005 47.826 0.00 0.00 0.00 1.75
3440 3869 4.262506 GCGGAGTTAGGGTGCTAATATTCT 60.263 45.833 0.00 0.00 0.00 2.40
3441 3870 5.742255 GCGGAGTTAGGGTGCTAATATTCTT 60.742 44.000 0.00 0.00 0.00 2.52
3442 3871 5.696724 CGGAGTTAGGGTGCTAATATTCTTG 59.303 44.000 0.00 0.00 0.00 3.02
3456 3885 8.800332 GCTAATATTCTTGGTTGATGATCCAAT 58.200 33.333 0.00 0.00 41.89 3.16
3463 3892 4.920999 TGGTTGATGATCCAATGACAAGA 58.079 39.130 0.00 0.00 0.00 3.02
3476 3905 7.174413 TCCAATGACAAGATCCTACAATTTCA 58.826 34.615 0.00 0.00 0.00 2.69
3532 3961 6.320672 CCCTGATTGCTTTGATGAATTCTAGT 59.679 38.462 7.05 0.00 0.00 2.57
3618 4047 1.539388 TGATGTGTGGATTGGCGAAAC 59.461 47.619 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.680237 CACCGAGGGAGCGCAACA 62.680 66.667 11.47 0.00 0.00 3.33
1 2 4.681978 ACACCGAGGGAGCGCAAC 62.682 66.667 11.47 2.54 0.00 4.17
2 3 3.876589 GAACACCGAGGGAGCGCAA 62.877 63.158 11.47 0.00 0.00 4.85
3 4 4.373116 GAACACCGAGGGAGCGCA 62.373 66.667 11.47 0.00 0.00 6.09
7 8 4.452733 GGGCGAACACCGAGGGAG 62.453 72.222 0.00 0.00 41.76 4.30
10 11 4.760047 CAGGGGCGAACACCGAGG 62.760 72.222 0.00 0.00 41.76 4.63
17 18 4.115199 ATCAGGGCAGGGGCGAAC 62.115 66.667 0.00 0.00 42.47 3.95
18 19 3.797353 GATCAGGGCAGGGGCGAA 61.797 66.667 0.00 0.00 42.47 4.70
21 22 4.115199 AACGATCAGGGCAGGGGC 62.115 66.667 0.00 0.00 40.13 5.80
22 23 1.915078 AAGAACGATCAGGGCAGGGG 61.915 60.000 0.00 0.00 0.00 4.79
23 24 0.462759 GAAGAACGATCAGGGCAGGG 60.463 60.000 0.00 0.00 0.00 4.45
24 25 0.462759 GGAAGAACGATCAGGGCAGG 60.463 60.000 0.00 0.00 0.00 4.85
25 26 0.462759 GGGAAGAACGATCAGGGCAG 60.463 60.000 0.00 0.00 0.00 4.85
26 27 1.602237 GGGAAGAACGATCAGGGCA 59.398 57.895 0.00 0.00 0.00 5.36
27 28 1.153147 GGGGAAGAACGATCAGGGC 60.153 63.158 0.00 0.00 0.00 5.19
28 29 1.144057 CGGGGAAGAACGATCAGGG 59.856 63.158 0.00 0.00 0.00 4.45
29 30 1.144057 CCGGGGAAGAACGATCAGG 59.856 63.158 0.00 0.00 0.00 3.86
30 31 1.521681 GCCGGGGAAGAACGATCAG 60.522 63.158 2.18 0.00 0.00 2.90
31 32 2.582436 GCCGGGGAAGAACGATCA 59.418 61.111 2.18 0.00 0.00 2.92
32 33 2.585247 CGCCGGGGAAGAACGATC 60.585 66.667 14.46 0.00 0.00 3.69
33 34 4.832608 GCGCCGGGGAAGAACGAT 62.833 66.667 24.68 0.00 0.00 3.73
36 37 2.750237 ATTGCGCCGGGGAAGAAC 60.750 61.111 24.68 4.22 0.00 3.01
37 38 2.186602 TACATTGCGCCGGGGAAGAA 62.187 55.000 24.68 11.44 0.00 2.52
38 39 2.661066 TACATTGCGCCGGGGAAGA 61.661 57.895 24.68 7.04 0.00 2.87
39 40 2.124901 TACATTGCGCCGGGGAAG 60.125 61.111 24.68 10.35 0.00 3.46
40 41 2.437002 GTACATTGCGCCGGGGAA 60.437 61.111 24.68 9.61 0.00 3.97
41 42 4.823419 CGTACATTGCGCCGGGGA 62.823 66.667 24.68 1.70 0.00 4.81
44 45 3.560278 GACCGTACATTGCGCCGG 61.560 66.667 17.23 17.23 45.72 6.13
45 46 3.908951 CGACCGTACATTGCGCCG 61.909 66.667 4.18 0.00 0.00 6.46
46 47 2.795389 GACGACCGTACATTGCGCC 61.795 63.158 4.18 0.00 0.00 6.53
47 48 2.693285 GACGACCGTACATTGCGC 59.307 61.111 0.00 0.00 0.00 6.09
48 49 2.984466 CGACGACCGTACATTGCG 59.016 61.111 0.00 0.00 0.00 4.85
49 50 2.693285 GCGACGACCGTACATTGC 59.307 61.111 0.00 0.00 41.15 3.56
50 51 3.380671 GGCGACGACCGTACATTG 58.619 61.111 0.00 0.00 41.15 2.82
62 63 1.079405 TCTTGGAATCACCGGCGAC 60.079 57.895 9.30 0.00 42.61 5.19
63 64 1.079405 GTCTTGGAATCACCGGCGA 60.079 57.895 9.30 0.00 42.61 5.54
64 65 2.452813 CGTCTTGGAATCACCGGCG 61.453 63.158 0.00 0.00 42.61 6.46
65 66 2.106683 CCGTCTTGGAATCACCGGC 61.107 63.158 0.00 0.00 42.00 6.13
66 67 1.019278 CACCGTCTTGGAATCACCGG 61.019 60.000 0.00 0.00 42.00 5.28
67 68 1.635663 GCACCGTCTTGGAATCACCG 61.636 60.000 0.00 0.00 42.00 4.94
68 69 1.305930 GGCACCGTCTTGGAATCACC 61.306 60.000 0.00 0.00 42.00 4.02
69 70 0.321653 AGGCACCGTCTTGGAATCAC 60.322 55.000 0.00 0.00 42.00 3.06
70 71 0.400213 AAGGCACCGTCTTGGAATCA 59.600 50.000 0.00 0.00 42.00 2.57
71 72 1.534729 AAAGGCACCGTCTTGGAATC 58.465 50.000 0.00 0.00 42.00 2.52
72 73 1.995376 AAAAGGCACCGTCTTGGAAT 58.005 45.000 0.00 0.00 42.00 3.01
73 74 1.770294 AAAAAGGCACCGTCTTGGAA 58.230 45.000 0.00 0.00 42.00 3.53
74 75 3.505835 AAAAAGGCACCGTCTTGGA 57.494 47.368 0.00 0.00 42.00 3.53
100 101 1.767681 AGAGGATGGCAGGACTCAATC 59.232 52.381 15.30 1.79 32.52 2.67
101 102 1.890552 AGAGGATGGCAGGACTCAAT 58.109 50.000 15.30 0.00 32.52 2.57
102 103 1.280133 CAAGAGGATGGCAGGACTCAA 59.720 52.381 15.30 0.00 32.52 3.02
103 104 0.907486 CAAGAGGATGGCAGGACTCA 59.093 55.000 15.30 0.00 32.52 3.41
104 105 0.908198 ACAAGAGGATGGCAGGACTC 59.092 55.000 7.53 7.53 0.00 3.36
105 106 0.908198 GACAAGAGGATGGCAGGACT 59.092 55.000 0.00 0.00 0.00 3.85
106 107 0.107459 GGACAAGAGGATGGCAGGAC 60.107 60.000 0.00 0.00 0.00 3.85
107 108 0.252881 AGGACAAGAGGATGGCAGGA 60.253 55.000 0.00 0.00 0.00 3.86
108 109 0.179936 GAGGACAAGAGGATGGCAGG 59.820 60.000 0.00 0.00 0.00 4.85
109 110 1.138661 GAGAGGACAAGAGGATGGCAG 59.861 57.143 0.00 0.00 0.00 4.85
110 111 1.198713 GAGAGGACAAGAGGATGGCA 58.801 55.000 0.00 0.00 0.00 4.92
111 112 1.198713 TGAGAGGACAAGAGGATGGC 58.801 55.000 0.00 0.00 0.00 4.40
112 113 2.104451 CCATGAGAGGACAAGAGGATGG 59.896 54.545 0.00 0.00 0.00 3.51
113 114 2.104451 CCCATGAGAGGACAAGAGGATG 59.896 54.545 0.00 0.00 0.00 3.51
114 115 2.406559 CCCATGAGAGGACAAGAGGAT 58.593 52.381 0.00 0.00 0.00 3.24
115 116 1.623557 CCCCATGAGAGGACAAGAGGA 60.624 57.143 0.00 0.00 0.00 3.71
116 117 0.835941 CCCCATGAGAGGACAAGAGG 59.164 60.000 0.00 0.00 0.00 3.69
117 118 0.835941 CCCCCATGAGAGGACAAGAG 59.164 60.000 0.00 0.00 0.00 2.85
118 119 0.417437 TCCCCCATGAGAGGACAAGA 59.583 55.000 0.00 0.00 0.00 3.02
119 120 1.142465 CATCCCCCATGAGAGGACAAG 59.858 57.143 0.00 0.00 33.80 3.16
120 121 1.216064 CATCCCCCATGAGAGGACAA 58.784 55.000 0.00 0.00 33.80 3.18
121 122 0.695462 CCATCCCCCATGAGAGGACA 60.695 60.000 0.00 0.00 33.80 4.02
122 123 0.695803 ACCATCCCCCATGAGAGGAC 60.696 60.000 0.00 0.00 33.80 3.85
123 124 0.695462 CACCATCCCCCATGAGAGGA 60.695 60.000 0.00 0.00 33.80 3.71
124 125 1.842007 CACCATCCCCCATGAGAGG 59.158 63.158 0.00 0.00 33.80 3.69
125 126 1.150081 GCACCATCCCCCATGAGAG 59.850 63.158 0.00 0.00 33.80 3.20
126 127 0.995132 ATGCACCATCCCCCATGAGA 60.995 55.000 0.00 0.00 33.80 3.27
127 128 0.105862 AATGCACCATCCCCCATGAG 60.106 55.000 0.00 0.00 33.80 2.90
128 129 0.397394 CAATGCACCATCCCCCATGA 60.397 55.000 0.00 0.00 33.80 3.07
129 130 0.397394 TCAATGCACCATCCCCCATG 60.397 55.000 0.00 0.00 0.00 3.66
130 131 0.397535 GTCAATGCACCATCCCCCAT 60.398 55.000 0.00 0.00 0.00 4.00
131 132 1.000233 GTCAATGCACCATCCCCCA 60.000 57.895 0.00 0.00 0.00 4.96
132 133 0.614415 TTGTCAATGCACCATCCCCC 60.614 55.000 0.00 0.00 0.00 5.40
133 134 0.819582 CTTGTCAATGCACCATCCCC 59.180 55.000 0.00 0.00 0.00 4.81
134 135 0.819582 CCTTGTCAATGCACCATCCC 59.180 55.000 0.00 0.00 0.00 3.85
135 136 1.838112 TCCTTGTCAATGCACCATCC 58.162 50.000 0.00 0.00 0.00 3.51
136 137 3.841643 CTTTCCTTGTCAATGCACCATC 58.158 45.455 0.00 0.00 0.00 3.51
137 138 2.028748 GCTTTCCTTGTCAATGCACCAT 60.029 45.455 0.00 0.00 0.00 3.55
138 139 1.340889 GCTTTCCTTGTCAATGCACCA 59.659 47.619 0.00 0.00 0.00 4.17
139 140 1.615392 AGCTTTCCTTGTCAATGCACC 59.385 47.619 0.00 0.00 0.00 5.01
140 141 3.054878 CAAGCTTTCCTTGTCAATGCAC 58.945 45.455 0.00 0.00 44.74 4.57
141 142 3.374220 CAAGCTTTCCTTGTCAATGCA 57.626 42.857 0.00 0.00 44.74 3.96
150 151 0.038890 GCTCCCTCCAAGCTTTCCTT 59.961 55.000 0.00 0.00 36.80 3.36
151 152 1.688211 GCTCCCTCCAAGCTTTCCT 59.312 57.895 0.00 0.00 36.80 3.36
152 153 1.746991 CGCTCCCTCCAAGCTTTCC 60.747 63.158 0.00 0.00 37.62 3.13
153 154 1.746991 CCGCTCCCTCCAAGCTTTC 60.747 63.158 0.00 0.00 37.62 2.62
154 155 2.352805 CCGCTCCCTCCAAGCTTT 59.647 61.111 0.00 0.00 37.62 3.51
155 156 4.416738 GCCGCTCCCTCCAAGCTT 62.417 66.667 0.00 0.00 37.62 3.74
162 163 3.607370 AAAGAACGGCCGCTCCCTC 62.607 63.158 28.58 14.12 0.00 4.30
163 164 3.637273 AAAGAACGGCCGCTCCCT 61.637 61.111 28.58 14.29 0.00 4.20
164 165 3.431725 CAAAGAACGGCCGCTCCC 61.432 66.667 28.58 11.98 0.00 4.30
165 166 3.431725 CCAAAGAACGGCCGCTCC 61.432 66.667 28.58 14.82 0.00 4.70
166 167 2.358247 TCCAAAGAACGGCCGCTC 60.358 61.111 28.58 24.43 0.00 5.03
167 168 2.358737 CTCCAAAGAACGGCCGCT 60.359 61.111 28.58 15.08 0.00 5.52
168 169 3.431725 CCTCCAAAGAACGGCCGC 61.432 66.667 28.58 10.42 0.00 6.53
169 170 2.032071 ACCTCCAAAGAACGGCCG 59.968 61.111 26.86 26.86 0.00 6.13
170 171 1.072505 TCACCTCCAAAGAACGGCC 59.927 57.895 0.00 0.00 0.00 6.13
171 172 1.235281 GGTCACCTCCAAAGAACGGC 61.235 60.000 0.00 0.00 0.00 5.68
172 173 0.949105 CGGTCACCTCCAAAGAACGG 60.949 60.000 0.00 0.00 38.71 4.44
173 174 0.949105 CCGGTCACCTCCAAAGAACG 60.949 60.000 0.00 0.00 41.81 3.95
174 175 1.235281 GCCGGTCACCTCCAAAGAAC 61.235 60.000 1.90 0.00 0.00 3.01
175 176 1.072505 GCCGGTCACCTCCAAAGAA 59.927 57.895 1.90 0.00 0.00 2.52
176 177 2.747686 GCCGGTCACCTCCAAAGA 59.252 61.111 1.90 0.00 0.00 2.52
177 178 2.742372 CGCCGGTCACCTCCAAAG 60.742 66.667 1.90 0.00 0.00 2.77
178 179 3.524648 GACGCCGGTCACCTCCAAA 62.525 63.158 1.90 0.00 42.91 3.28
179 180 3.998672 GACGCCGGTCACCTCCAA 61.999 66.667 1.90 0.00 42.91 3.53
198 199 4.755614 AACTCGCCGCGTCTCGAC 62.756 66.667 13.39 0.00 41.67 4.20
199 200 3.547249 AAAACTCGCCGCGTCTCGA 62.547 57.895 13.39 10.20 41.67 4.04
200 201 3.055905 GAAAACTCGCCGCGTCTCG 62.056 63.158 13.39 5.79 38.08 4.04
201 202 2.770259 GAAAACTCGCCGCGTCTC 59.230 61.111 13.39 0.09 0.00 3.36
202 203 3.103911 CGAAAACTCGCCGCGTCT 61.104 61.111 13.39 0.00 0.00 4.18
203 204 4.130281 CCGAAAACTCGCCGCGTC 62.130 66.667 13.39 1.23 0.00 5.19
204 205 4.955774 ACCGAAAACTCGCCGCGT 62.956 61.111 13.39 0.00 0.00 6.01
205 206 2.704973 AAAACCGAAAACTCGCCGCG 62.705 55.000 6.39 6.39 0.00 6.46
206 207 1.009335 AAAACCGAAAACTCGCCGC 60.009 52.632 0.00 0.00 0.00 6.53
207 208 0.659123 CCAAAACCGAAAACTCGCCG 60.659 55.000 0.00 0.00 0.00 6.46
208 209 0.664224 TCCAAAACCGAAAACTCGCC 59.336 50.000 0.00 0.00 0.00 5.54
209 210 1.600485 TCTCCAAAACCGAAAACTCGC 59.400 47.619 0.00 0.00 0.00 5.03
210 211 2.223377 CCTCTCCAAAACCGAAAACTCG 59.777 50.000 0.00 0.00 0.00 4.18
211 212 2.031069 GCCTCTCCAAAACCGAAAACTC 60.031 50.000 0.00 0.00 0.00 3.01
212 213 1.954382 GCCTCTCCAAAACCGAAAACT 59.046 47.619 0.00 0.00 0.00 2.66
213 214 1.954382 AGCCTCTCCAAAACCGAAAAC 59.046 47.619 0.00 0.00 0.00 2.43
214 215 2.358322 AGCCTCTCCAAAACCGAAAA 57.642 45.000 0.00 0.00 0.00 2.29
215 216 2.358322 AAGCCTCTCCAAAACCGAAA 57.642 45.000 0.00 0.00 0.00 3.46
216 217 2.358322 AAAGCCTCTCCAAAACCGAA 57.642 45.000 0.00 0.00 0.00 4.30
217 218 2.358322 AAAAGCCTCTCCAAAACCGA 57.642 45.000 0.00 0.00 0.00 4.69
218 219 2.742774 CAAAAAGCCTCTCCAAAACCG 58.257 47.619 0.00 0.00 0.00 4.44
219 220 2.483876 GCAAAAAGCCTCTCCAAAACC 58.516 47.619 0.00 0.00 37.23 3.27
220 221 2.127251 CGCAAAAAGCCTCTCCAAAAC 58.873 47.619 0.00 0.00 41.38 2.43
221 222 1.754226 ACGCAAAAAGCCTCTCCAAAA 59.246 42.857 0.00 0.00 41.38 2.44
222 223 1.398692 ACGCAAAAAGCCTCTCCAAA 58.601 45.000 0.00 0.00 41.38 3.28
223 224 1.066908 CAACGCAAAAAGCCTCTCCAA 59.933 47.619 0.00 0.00 41.38 3.53
224 225 0.667993 CAACGCAAAAAGCCTCTCCA 59.332 50.000 0.00 0.00 41.38 3.86
225 226 0.668535 ACAACGCAAAAAGCCTCTCC 59.331 50.000 0.00 0.00 41.38 3.71
226 227 1.600413 CCACAACGCAAAAAGCCTCTC 60.600 52.381 0.00 0.00 41.38 3.20
227 228 0.385390 CCACAACGCAAAAAGCCTCT 59.615 50.000 0.00 0.00 41.38 3.69
228 229 0.102300 ACCACAACGCAAAAAGCCTC 59.898 50.000 0.00 0.00 41.38 4.70
229 230 0.534873 AACCACAACGCAAAAAGCCT 59.465 45.000 0.00 0.00 41.38 4.58
230 231 0.649993 CAACCACAACGCAAAAAGCC 59.350 50.000 0.00 0.00 41.38 4.35
231 232 1.060409 CACAACCACAACGCAAAAAGC 59.940 47.619 0.00 0.00 40.87 3.51
232 233 2.333014 ACACAACCACAACGCAAAAAG 58.667 42.857 0.00 0.00 0.00 2.27
233 234 2.440539 ACACAACCACAACGCAAAAA 57.559 40.000 0.00 0.00 0.00 1.94
234 235 2.061773 CAACACAACCACAACGCAAAA 58.938 42.857 0.00 0.00 0.00 2.44
235 236 1.000163 ACAACACAACCACAACGCAAA 60.000 42.857 0.00 0.00 0.00 3.68
236 237 0.598562 ACAACACAACCACAACGCAA 59.401 45.000 0.00 0.00 0.00 4.85
237 238 0.598562 AACAACACAACCACAACGCA 59.401 45.000 0.00 0.00 0.00 5.24
238 239 0.988439 CAACAACACAACCACAACGC 59.012 50.000 0.00 0.00 0.00 4.84
239 240 1.982223 CACAACAACACAACCACAACG 59.018 47.619 0.00 0.00 0.00 4.10
240 241 2.029828 TCCACAACAACACAACCACAAC 60.030 45.455 0.00 0.00 0.00 3.32
241 242 2.239400 TCCACAACAACACAACCACAA 58.761 42.857 0.00 0.00 0.00 3.33
242 243 1.911057 TCCACAACAACACAACCACA 58.089 45.000 0.00 0.00 0.00 4.17
243 244 2.481104 CCATCCACAACAACACAACCAC 60.481 50.000 0.00 0.00 0.00 4.16
244 245 1.753649 CCATCCACAACAACACAACCA 59.246 47.619 0.00 0.00 0.00 3.67
245 246 1.537990 GCCATCCACAACAACACAACC 60.538 52.381 0.00 0.00 0.00 3.77
246 247 1.408702 AGCCATCCACAACAACACAAC 59.591 47.619 0.00 0.00 0.00 3.32
247 248 1.408340 CAGCCATCCACAACAACACAA 59.592 47.619 0.00 0.00 0.00 3.33
248 249 1.031235 CAGCCATCCACAACAACACA 58.969 50.000 0.00 0.00 0.00 3.72
249 250 1.001378 GACAGCCATCCACAACAACAC 60.001 52.381 0.00 0.00 0.00 3.32
250 251 1.317613 GACAGCCATCCACAACAACA 58.682 50.000 0.00 0.00 0.00 3.33
251 252 0.598065 GGACAGCCATCCACAACAAC 59.402 55.000 0.00 0.00 38.77 3.32
252 253 0.478072 AGGACAGCCATCCACAACAA 59.522 50.000 6.62 0.00 41.73 2.83
253 254 0.478072 AAGGACAGCCATCCACAACA 59.522 50.000 6.62 0.00 41.73 3.33
254 255 0.883833 CAAGGACAGCCATCCACAAC 59.116 55.000 6.62 0.00 41.73 3.32
255 256 0.251297 CCAAGGACAGCCATCCACAA 60.251 55.000 6.62 0.00 41.73 3.33
256 257 1.133181 TCCAAGGACAGCCATCCACA 61.133 55.000 6.62 0.00 41.73 4.17
257 258 0.678048 GTCCAAGGACAGCCATCCAC 60.678 60.000 14.19 0.00 44.02 4.02
258 259 0.842030 AGTCCAAGGACAGCCATCCA 60.842 55.000 20.52 0.00 46.76 3.41
259 260 1.139853 CTAGTCCAAGGACAGCCATCC 59.860 57.143 20.52 0.00 46.76 3.51
260 261 1.474143 GCTAGTCCAAGGACAGCCATC 60.474 57.143 20.52 1.10 46.76 3.51
261 262 0.543749 GCTAGTCCAAGGACAGCCAT 59.456 55.000 20.52 2.86 46.76 4.40
262 263 1.983224 GCTAGTCCAAGGACAGCCA 59.017 57.895 20.52 2.95 46.76 4.75
263 264 4.943822 GCTAGTCCAAGGACAGCC 57.056 61.111 20.52 4.91 46.76 4.85
264 265 1.153549 CGGCTAGTCCAAGGACAGC 60.154 63.158 23.60 23.60 46.76 4.40
265 266 1.258445 ACCGGCTAGTCCAAGGACAG 61.258 60.000 20.52 15.50 46.76 3.51
266 267 0.834687 AACCGGCTAGTCCAAGGACA 60.835 55.000 20.52 6.61 46.76 4.02
267 268 0.391263 CAACCGGCTAGTCCAAGGAC 60.391 60.000 11.29 11.29 44.86 3.85
268 269 0.834687 ACAACCGGCTAGTCCAAGGA 60.835 55.000 0.00 0.00 34.01 3.36
269 270 0.673644 CACAACCGGCTAGTCCAAGG 60.674 60.000 0.00 0.00 34.01 3.61
270 271 0.673644 CCACAACCGGCTAGTCCAAG 60.674 60.000 0.00 0.00 34.01 3.61
271 272 1.122632 TCCACAACCGGCTAGTCCAA 61.123 55.000 0.00 0.00 34.01 3.53
272 273 1.534476 TCCACAACCGGCTAGTCCA 60.534 57.895 0.00 0.00 34.01 4.02
273 274 1.218316 CTCCACAACCGGCTAGTCC 59.782 63.158 0.00 0.00 0.00 3.85
274 275 0.320697 AACTCCACAACCGGCTAGTC 59.679 55.000 0.00 0.00 0.00 2.59
275 276 0.034896 CAACTCCACAACCGGCTAGT 59.965 55.000 0.00 0.00 0.00 2.57
276 277 0.034896 ACAACTCCACAACCGGCTAG 59.965 55.000 0.00 0.00 0.00 3.42
277 278 0.250124 CACAACTCCACAACCGGCTA 60.250 55.000 0.00 0.00 0.00 3.93
278 279 1.525995 CACAACTCCACAACCGGCT 60.526 57.895 0.00 0.00 0.00 5.52
279 280 3.030652 CACAACTCCACAACCGGC 58.969 61.111 0.00 0.00 0.00 6.13
280 281 0.250124 TAGCACAACTCCACAACCGG 60.250 55.000 0.00 0.00 0.00 5.28
281 282 0.865769 GTAGCACAACTCCACAACCG 59.134 55.000 0.00 0.00 0.00 4.44
282 283 0.865769 CGTAGCACAACTCCACAACC 59.134 55.000 0.00 0.00 0.00 3.77
308 309 2.744768 GCTACCACTTGCTGCGAGC 61.745 63.158 16.75 0.00 42.82 5.03
309 310 3.479370 GCTACCACTTGCTGCGAG 58.521 61.111 15.31 15.31 0.00 5.03
312 313 0.951040 AAGACGCTACCACTTGCTGC 60.951 55.000 0.00 0.00 0.00 5.25
313 314 0.792640 CAAGACGCTACCACTTGCTG 59.207 55.000 0.00 0.00 35.43 4.41
314 315 0.393077 ACAAGACGCTACCACTTGCT 59.607 50.000 0.00 0.00 42.93 3.91
315 316 1.725164 GTACAAGACGCTACCACTTGC 59.275 52.381 0.00 0.00 42.93 4.01
316 317 3.299340 AGTACAAGACGCTACCACTTG 57.701 47.619 0.00 0.00 44.16 3.16
317 318 5.458041 TTAAGTACAAGACGCTACCACTT 57.542 39.130 0.00 0.00 0.00 3.16
318 319 5.656213 ATTAAGTACAAGACGCTACCACT 57.344 39.130 0.00 0.00 0.00 4.00
319 320 7.919621 AGAATATTAAGTACAAGACGCTACCAC 59.080 37.037 0.00 0.00 0.00 4.16
320 321 8.004087 AGAATATTAAGTACAAGACGCTACCA 57.996 34.615 0.00 0.00 0.00 3.25
321 322 8.868635 AAGAATATTAAGTACAAGACGCTACC 57.131 34.615 0.00 0.00 0.00 3.18
324 325 9.654663 AGAAAAGAATATTAAGTACAAGACGCT 57.345 29.630 0.00 0.00 0.00 5.07
352 353 9.887189 CGCAAATTACGTATCATAGCTTTATAG 57.113 33.333 0.00 0.00 0.00 1.31
353 354 9.414295 ACGCAAATTACGTATCATAGCTTTATA 57.586 29.630 4.75 0.00 43.02 0.98
354 355 8.306680 ACGCAAATTACGTATCATAGCTTTAT 57.693 30.769 4.75 0.00 43.02 1.40
355 356 7.703298 ACGCAAATTACGTATCATAGCTTTA 57.297 32.000 4.75 0.00 43.02 1.85
356 357 6.598753 ACGCAAATTACGTATCATAGCTTT 57.401 33.333 4.75 0.00 43.02 3.51
357 358 6.921857 AGTACGCAAATTACGTATCATAGCTT 59.078 34.615 14.46 0.00 46.52 3.74
358 359 6.444633 AGTACGCAAATTACGTATCATAGCT 58.555 36.000 14.46 0.00 46.52 3.32
359 360 6.581542 AGAGTACGCAAATTACGTATCATAGC 59.418 38.462 14.46 0.00 46.52 2.97
360 361 7.006298 CGAGAGTACGCAAATTACGTATCATAG 59.994 40.741 14.46 5.94 46.52 2.23
361 362 6.793680 CGAGAGTACGCAAATTACGTATCATA 59.206 38.462 14.46 0.00 46.52 2.15
362 363 5.624081 CGAGAGTACGCAAATTACGTATCAT 59.376 40.000 14.46 6.50 46.52 2.45
363 364 4.965762 CGAGAGTACGCAAATTACGTATCA 59.034 41.667 14.46 0.00 46.52 2.15
364 365 5.200454 TCGAGAGTACGCAAATTACGTATC 58.800 41.667 14.46 12.59 46.52 2.24
365 366 5.160699 TCGAGAGTACGCAAATTACGTAT 57.839 39.130 14.46 6.37 46.52 3.06
366 367 4.598406 TCGAGAGTACGCAAATTACGTA 57.402 40.909 9.00 9.00 44.55 3.57
368 369 4.811158 TTTCGAGAGTACGCAAATTACG 57.189 40.909 0.00 0.00 0.00 3.18
442 443 1.578897 AAGCCCTGTTTGTTTGGGTT 58.421 45.000 0.00 0.00 42.77 4.11
443 444 2.463047 TAAGCCCTGTTTGTTTGGGT 57.537 45.000 0.00 0.00 42.77 4.51
446 447 3.888930 TCCTCTTAAGCCCTGTTTGTTTG 59.111 43.478 0.00 0.00 0.00 2.93
447 448 4.178956 TCCTCTTAAGCCCTGTTTGTTT 57.821 40.909 0.00 0.00 0.00 2.83
448 449 3.876309 TCCTCTTAAGCCCTGTTTGTT 57.124 42.857 0.00 0.00 0.00 2.83
495 496 5.568685 TCGAAAAAGGAAAACATGTCACA 57.431 34.783 0.00 0.00 0.00 3.58
498 499 8.690840 CACTATTTCGAAAAAGGAAAACATGTC 58.309 33.333 15.66 0.00 37.00 3.06
500 501 8.479280 CACACTATTTCGAAAAAGGAAAACATG 58.521 33.333 15.66 4.73 37.00 3.21
510 511 7.115663 GCATTTTAGCCACACTATTTCGAAAAA 59.884 33.333 15.66 0.00 0.00 1.94
516 517 5.979517 GGATGCATTTTAGCCACACTATTTC 59.020 40.000 0.00 0.00 0.00 2.17
538 539 2.028484 GACGCTCGTGGTTGTGGA 59.972 61.111 0.00 0.00 0.00 4.02
617 627 6.170506 AGGTTCACTCATTTTGCTTCGTATA 58.829 36.000 0.00 0.00 0.00 1.47
621 631 3.904136 AGGTTCACTCATTTTGCTTCG 57.096 42.857 0.00 0.00 0.00 3.79
623 633 5.133221 AGTGTAGGTTCACTCATTTTGCTT 58.867 37.500 0.00 0.00 44.07 3.91
680 692 9.769093 ATTCGTCTTTTTAAGGATTTCAATACG 57.231 29.630 0.00 0.00 0.00 3.06
709 721 9.765795 AATGAATTATACTCCTTCCGTTTCTAG 57.234 33.333 0.00 0.00 0.00 2.43
716 728 5.049405 GGTGCAATGAATTATACTCCTTCCG 60.049 44.000 0.00 0.00 0.00 4.30
720 732 5.057149 GTCGGTGCAATGAATTATACTCCT 58.943 41.667 0.00 0.00 0.00 3.69
732 744 1.202639 TGGCTATAGGTCGGTGCAATG 60.203 52.381 1.04 0.00 0.00 2.82
750 762 4.778534 TTGGACTAGTCTTTAGTCGTGG 57.221 45.455 21.88 0.00 43.53 4.94
758 770 7.963532 TGACTTGAGTTATTGGACTAGTCTTT 58.036 34.615 21.88 9.84 36.70 2.52
810 822 8.861086 CCAGCTAGGAGTTCTACTATAAATGAA 58.139 37.037 0.00 0.00 41.22 2.57
818 830 6.561838 ACCTATACCAGCTAGGAGTTCTACTA 59.438 42.308 6.48 0.00 41.22 1.82
908 921 2.466846 CCGTAATGTGATCCGTGTACC 58.533 52.381 0.00 0.00 0.00 3.34
927 950 4.030452 GTGTTGCCACTCGCTGCC 62.030 66.667 0.00 0.00 38.61 4.85
934 957 5.985724 GGCTGTTAGCTAGTGTTGCCACT 62.986 52.174 15.54 1.16 45.42 4.00
942 965 1.521681 GCCCGGCTGTTAGCTAGTG 60.522 63.158 0.71 0.00 41.99 2.74
949 972 1.904990 TATGTGCTGCCCGGCTGTTA 61.905 55.000 16.82 4.97 0.00 2.41
982 1006 3.432749 GCCATGCTCTTGTCTAGGAATGA 60.433 47.826 0.00 0.00 0.00 2.57
1055 1079 4.070552 GGCTCGACGGGACTTGCT 62.071 66.667 0.00 0.00 0.00 3.91
1238 1262 1.083015 CAACAAGCGGTGCACGTAC 60.083 57.895 11.45 2.26 46.52 3.67
1249 1273 5.948992 AAGATTAACTGGTCTCAACAAGC 57.051 39.130 0.00 0.00 28.33 4.01
1269 1293 4.201724 GCTACTACATCGGCAGAACAAAAG 60.202 45.833 0.00 0.00 0.00 2.27
1334 1358 2.933495 TCACCTACATACGCAGTGAC 57.067 50.000 0.00 0.00 45.73 3.67
1659 1684 4.911390 ACTTAATTAGTTGGTGAGCAGCT 58.089 39.130 6.22 6.22 31.29 4.24
1740 1765 3.058914 GGGCCGTATTGAAAGATTCGATG 60.059 47.826 0.00 0.00 35.44 3.84
1768 1793 3.252458 GCCTCGTTGTTTTGACAGGTTAT 59.748 43.478 0.00 0.00 0.00 1.89
1882 1908 7.484140 CAGTTATATTTTGCCTCCTTTTCTCC 58.516 38.462 0.00 0.00 0.00 3.71
1890 1916 5.582550 GAACAGCAGTTATATTTTGCCTCC 58.417 41.667 0.00 0.00 38.30 4.30
1921 1947 4.408182 AATACACCTATCAGTCTGCCAC 57.592 45.455 0.00 0.00 0.00 5.01
1923 1949 5.006746 CGAAAAATACACCTATCAGTCTGCC 59.993 44.000 0.00 0.00 0.00 4.85
1927 1953 6.103997 TCACCGAAAAATACACCTATCAGTC 58.896 40.000 0.00 0.00 0.00 3.51
1947 1973 7.117812 TCAGTTTATTTCGAACTCAATCTCACC 59.882 37.037 0.00 0.00 35.26 4.02
1954 1980 9.232082 CAAATTGTCAGTTTATTTCGAACTCAA 57.768 29.630 0.00 0.00 35.26 3.02
1955 1981 7.378461 GCAAATTGTCAGTTTATTTCGAACTCA 59.622 33.333 0.00 0.00 35.26 3.41
1956 1982 7.408290 CGCAAATTGTCAGTTTATTTCGAACTC 60.408 37.037 0.00 0.00 35.26 3.01
1957 1983 6.359617 CGCAAATTGTCAGTTTATTTCGAACT 59.640 34.615 0.00 0.00 37.82 3.01
1958 1984 6.504821 CGCAAATTGTCAGTTTATTTCGAAC 58.495 36.000 0.00 0.00 0.00 3.95
1959 1985 5.116377 GCGCAAATTGTCAGTTTATTTCGAA 59.884 36.000 0.30 0.00 0.00 3.71
1960 1986 4.615121 GCGCAAATTGTCAGTTTATTTCGA 59.385 37.500 0.30 0.00 0.00 3.71
1961 1987 4.616802 AGCGCAAATTGTCAGTTTATTTCG 59.383 37.500 11.47 0.00 0.00 3.46
2002 2031 0.745845 TCGAGTAGGTGCCGACTACC 60.746 60.000 4.01 0.00 41.28 3.18
2287 2316 1.723870 GATGTTGATGACCAGCGCC 59.276 57.895 2.29 0.00 0.00 6.53
2308 2337 2.898729 AGGATACCTGCAGTTGATCG 57.101 50.000 13.81 0.00 29.57 3.69
2348 2377 0.528684 GGATGCCGTAGAGTGCTGTC 60.529 60.000 0.00 0.00 0.00 3.51
2441 2470 2.126850 TCGCTCTCGCTGTTCACG 60.127 61.111 0.00 0.00 35.26 4.35
2735 2764 2.657237 CGGGCGTCTTTCAGAGGT 59.343 61.111 0.00 0.00 33.01 3.85
2789 3141 0.109913 AAAGTTCTCCCGTTCACCCC 59.890 55.000 0.00 0.00 0.00 4.95
2840 3192 1.134159 ACCGGTCGTATCTCTAGTGCT 60.134 52.381 0.00 0.00 0.00 4.40
2841 3193 1.002684 CACCGGTCGTATCTCTAGTGC 60.003 57.143 2.59 0.00 0.00 4.40
2846 3198 1.134560 GAAAGCACCGGTCGTATCTCT 59.865 52.381 2.59 0.00 0.00 3.10
2866 3218 4.260375 CCGGTCGCATCTTCTTCTTTTATG 60.260 45.833 0.00 0.00 0.00 1.90
2878 3230 1.801395 CGTCAAATACCGGTCGCATCT 60.801 52.381 12.40 0.00 0.00 2.90
2879 3231 0.575390 CGTCAAATACCGGTCGCATC 59.425 55.000 12.40 0.00 0.00 3.91
2880 3232 1.426041 GCGTCAAATACCGGTCGCAT 61.426 55.000 25.60 6.86 42.54 4.73
2883 3235 0.368907 CTTGCGTCAAATACCGGTCG 59.631 55.000 12.40 8.89 0.00 4.79
3017 3428 3.778954 ACCTTTTTCAGACAGAGGGAG 57.221 47.619 0.00 0.00 0.00 4.30
3018 3429 3.202151 ACAACCTTTTTCAGACAGAGGGA 59.798 43.478 0.00 0.00 0.00 4.20
3019 3430 3.555966 ACAACCTTTTTCAGACAGAGGG 58.444 45.455 0.00 0.00 0.00 4.30
3020 3431 3.565902 GGACAACCTTTTTCAGACAGAGG 59.434 47.826 0.00 0.00 0.00 3.69
3021 3432 3.565902 GGGACAACCTTTTTCAGACAGAG 59.434 47.826 0.00 0.00 35.85 3.35
3022 3433 3.551846 GGGACAACCTTTTTCAGACAGA 58.448 45.455 0.00 0.00 35.85 3.41
3023 3434 3.990318 GGGACAACCTTTTTCAGACAG 57.010 47.619 0.00 0.00 35.85 3.51
3035 3446 5.888161 AGATACATTCATTTGAGGGACAACC 59.112 40.000 0.00 0.00 38.29 3.77
3036 3447 7.254932 GCTAGATACATTCATTTGAGGGACAAC 60.255 40.741 0.00 0.00 38.29 3.32
3037 3448 6.767902 GCTAGATACATTCATTTGAGGGACAA 59.232 38.462 0.00 0.00 36.65 3.18
3038 3449 6.126796 TGCTAGATACATTCATTTGAGGGACA 60.127 38.462 0.00 0.00 0.00 4.02
3039 3450 6.291377 TGCTAGATACATTCATTTGAGGGAC 58.709 40.000 0.00 0.00 0.00 4.46
3040 3451 6.499106 TGCTAGATACATTCATTTGAGGGA 57.501 37.500 0.00 0.00 0.00 4.20
3041 3452 6.938596 TGATGCTAGATACATTCATTTGAGGG 59.061 38.462 0.00 0.00 0.00 4.30
3042 3453 7.974482 TGATGCTAGATACATTCATTTGAGG 57.026 36.000 0.00 0.00 0.00 3.86
3049 3460 9.836864 ACACTAATTTGATGCTAGATACATTCA 57.163 29.630 0.00 0.00 0.00 2.57
3102 3513 6.016276 GCAAAATACTCCCTCTGTCTGAAAAA 60.016 38.462 0.00 0.00 0.00 1.94
3103 3514 5.473504 GCAAAATACTCCCTCTGTCTGAAAA 59.526 40.000 0.00 0.00 0.00 2.29
3104 3515 5.003804 GCAAAATACTCCCTCTGTCTGAAA 58.996 41.667 0.00 0.00 0.00 2.69
3105 3516 4.565652 GGCAAAATACTCCCTCTGTCTGAA 60.566 45.833 0.00 0.00 0.00 3.02
3106 3517 3.055094 GGCAAAATACTCCCTCTGTCTGA 60.055 47.826 0.00 0.00 0.00 3.27
3107 3518 3.274288 GGCAAAATACTCCCTCTGTCTG 58.726 50.000 0.00 0.00 0.00 3.51
3108 3519 2.912956 TGGCAAAATACTCCCTCTGTCT 59.087 45.455 0.00 0.00 0.00 3.41
3109 3520 3.274288 CTGGCAAAATACTCCCTCTGTC 58.726 50.000 0.00 0.00 0.00 3.51
3110 3521 2.025887 CCTGGCAAAATACTCCCTCTGT 60.026 50.000 0.00 0.00 0.00 3.41
3111 3522 2.648059 CCTGGCAAAATACTCCCTCTG 58.352 52.381 0.00 0.00 0.00 3.35
3112 3523 1.566231 CCCTGGCAAAATACTCCCTCT 59.434 52.381 0.00 0.00 0.00 3.69
3113 3524 1.564348 TCCCTGGCAAAATACTCCCTC 59.436 52.381 0.00 0.00 0.00 4.30
3114 3525 1.285078 GTCCCTGGCAAAATACTCCCT 59.715 52.381 0.00 0.00 0.00 4.20
3115 3526 1.763968 GTCCCTGGCAAAATACTCCC 58.236 55.000 0.00 0.00 0.00 4.30
3116 3527 1.379527 CGTCCCTGGCAAAATACTCC 58.620 55.000 0.00 0.00 0.00 3.85
3117 3528 1.379527 CCGTCCCTGGCAAAATACTC 58.620 55.000 0.00 0.00 0.00 2.59
3118 3529 0.034477 CCCGTCCCTGGCAAAATACT 60.034 55.000 0.00 0.00 0.00 2.12
3119 3530 2.489040 CCCGTCCCTGGCAAAATAC 58.511 57.895 0.00 0.00 0.00 1.89
3165 3594 5.107837 GCGATAGATTGATAGTGAACAACGG 60.108 44.000 0.00 0.00 39.76 4.44
3322 3751 3.942115 CACGATATAGCCTAGCTCTAGCA 59.058 47.826 4.54 0.00 45.16 3.49
3351 3780 8.310406 TGAAATCAGTACACAATAGTTCACTG 57.690 34.615 0.00 0.00 37.90 3.66
3359 3788 8.710835 TCGCTAAATGAAATCAGTACACAATA 57.289 30.769 0.00 0.00 0.00 1.90
3423 3852 6.964464 TCAACCAAGAATATTAGCACCCTAA 58.036 36.000 0.00 0.00 37.90 2.69
3434 3863 7.781219 TGTCATTGGATCATCAACCAAGAATAT 59.219 33.333 0.00 0.00 46.95 1.28
3436 3865 5.953548 TGTCATTGGATCATCAACCAAGAAT 59.046 36.000 0.00 0.00 46.95 2.40
3439 3868 5.416639 TCTTGTCATTGGATCATCAACCAAG 59.583 40.000 0.00 5.06 46.95 3.61
3441 3870 4.920999 TCTTGTCATTGGATCATCAACCA 58.079 39.130 0.00 0.00 0.00 3.67
3442 3871 5.009410 GGATCTTGTCATTGGATCATCAACC 59.991 44.000 0.00 0.00 37.99 3.77
3532 3961 8.704668 TCCTCATCAATGTTTATAAGTAGCTCA 58.295 33.333 0.00 0.00 0.00 4.26
3548 3977 7.288560 ACTGAAAATAGCTCATCCTCATCAAT 58.711 34.615 0.00 0.00 0.00 2.57
3618 4047 1.202031 GGAACTCGGTTGCTAAATGCG 60.202 52.381 1.98 0.00 46.63 4.73
3622 4051 1.543871 GGGTGGAACTCGGTTGCTAAA 60.544 52.381 9.05 0.00 34.98 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.