Multiple sequence alignment - TraesCS2A01G394300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G394300 chr2A 100.000 4607 0 0 1 4607 644244237 644248843 0.000000e+00 8508
1 TraesCS2A01G394300 chr2A 95.892 998 33 8 1 996 175924734 175925725 0.000000e+00 1609
2 TraesCS2A01G394300 chr4A 96.016 1004 28 6 1 1002 578253461 578254454 0.000000e+00 1622
3 TraesCS2A01G394300 chr4A 95.992 998 31 6 1 996 578246440 578247430 0.000000e+00 1613
4 TraesCS2A01G394300 chr4A 95.518 1004 33 11 1 1002 85971373 85970380 0.000000e+00 1594
5 TraesCS2A01G394300 chr6A 95.920 1005 30 9 1 1001 107164506 107165503 0.000000e+00 1618
6 TraesCS2A01G394300 chr5A 95.996 999 30 7 1 996 584975552 584976543 0.000000e+00 1615
7 TraesCS2A01G394300 chr5A 95.622 1005 29 11 1 1001 118850399 118849406 0.000000e+00 1598
8 TraesCS2A01G394300 chr7A 95.800 1000 28 8 1 996 31989497 31988508 0.000000e+00 1602
9 TraesCS2A01G394300 chr3A 95.700 1000 31 8 1 996 620549574 620550565 0.000000e+00 1598
10 TraesCS2A01G394300 chr2D 89.212 1307 73 34 3333 4607 499726694 499727964 0.000000e+00 1570
11 TraesCS2A01G394300 chr2D 85.411 1179 157 14 1331 2502 499724883 499726053 0.000000e+00 1210
12 TraesCS2A01G394300 chr2D 83.632 1173 180 10 1254 2422 499235701 499236865 0.000000e+00 1092
13 TraesCS2A01G394300 chr2D 90.121 496 24 8 2801 3272 499726181 499726675 5.060000e-174 621
14 TraesCS2A01G394300 chr2D 85.202 446 53 8 2799 3232 499237240 499237684 3.270000e-121 446
15 TraesCS2A01G394300 chr2D 79.961 519 69 18 3237 3751 499237721 499238208 2.640000e-92 350
16 TraesCS2A01G394300 chr2D 81.921 177 25 5 1000 1173 499724591 499724763 4.800000e-30 143
17 TraesCS2A01G394300 chr2B 87.616 1405 108 31 3223 4601 587241603 587242967 0.000000e+00 1570
18 TraesCS2A01G394300 chr2B 83.795 1191 158 20 1314 2502 587235185 587236342 0.000000e+00 1098
19 TraesCS2A01G394300 chr2B 91.647 419 28 4 2736 3148 587241185 587241602 1.440000e-159 573
20 TraesCS2A01G394300 chr2B 83.226 155 24 2 1000 1153 587234922 587235075 1.730000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G394300 chr2A 644244237 644248843 4606 False 8508.000000 8508 100.000000 1 4607 1 chr2A.!!$F2 4606
1 TraesCS2A01G394300 chr2A 175924734 175925725 991 False 1609.000000 1609 95.892000 1 996 1 chr2A.!!$F1 995
2 TraesCS2A01G394300 chr4A 578253461 578254454 993 False 1622.000000 1622 96.016000 1 1002 1 chr4A.!!$F2 1001
3 TraesCS2A01G394300 chr4A 578246440 578247430 990 False 1613.000000 1613 95.992000 1 996 1 chr4A.!!$F1 995
4 TraesCS2A01G394300 chr4A 85970380 85971373 993 True 1594.000000 1594 95.518000 1 1002 1 chr4A.!!$R1 1001
5 TraesCS2A01G394300 chr6A 107164506 107165503 997 False 1618.000000 1618 95.920000 1 1001 1 chr6A.!!$F1 1000
6 TraesCS2A01G394300 chr5A 584975552 584976543 991 False 1615.000000 1615 95.996000 1 996 1 chr5A.!!$F1 995
7 TraesCS2A01G394300 chr5A 118849406 118850399 993 True 1598.000000 1598 95.622000 1 1001 1 chr5A.!!$R1 1000
8 TraesCS2A01G394300 chr7A 31988508 31989497 989 True 1602.000000 1602 95.800000 1 996 1 chr7A.!!$R1 995
9 TraesCS2A01G394300 chr3A 620549574 620550565 991 False 1598.000000 1598 95.700000 1 996 1 chr3A.!!$F1 995
10 TraesCS2A01G394300 chr2D 499724591 499727964 3373 False 886.000000 1570 86.666250 1000 4607 4 chr2D.!!$F2 3607
11 TraesCS2A01G394300 chr2D 499235701 499238208 2507 False 629.333333 1092 82.931667 1254 3751 3 chr2D.!!$F1 2497
12 TraesCS2A01G394300 chr2B 587241185 587242967 1782 False 1071.500000 1570 89.631500 2736 4601 2 chr2B.!!$F2 1865
13 TraesCS2A01G394300 chr2B 587234922 587236342 1420 False 619.500000 1098 83.510500 1000 2502 2 chr2B.!!$F1 1502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.464452 CTACATGTCTCCCGAACCCC 59.536 60.0 0.00 0.0 0.00 4.95 F
1408 1436 0.036022 AGCACTGAAGGAAGCACTCC 59.964 55.0 0.00 0.0 45.81 3.85 F
1672 1700 0.673644 CCCTACTTTGTGGCGTGAGG 60.674 60.0 0.00 0.0 0.00 3.86 F
2426 2460 0.957395 AACTGAGAAGCACGGGCATG 60.957 55.0 14.57 0.0 44.61 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1651 1679 0.034337 TCACGCCACAAAGTAGGGTC 59.966 55.0 0.0 0.0 0.00 4.46 R
2967 3080 0.782384 CTTTCACCGAGAAACCGTCG 59.218 55.0 0.0 0.0 41.17 5.12 R
3517 3689 0.610174 AGCTCGATGACAGCCTTGAA 59.390 50.0 0.0 0.0 37.63 2.69 R
4024 4226 0.586319 CGGCAGTTCAAAAGCGAGAA 59.414 50.0 0.0 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 0.464452 CTACATGTCTCCCGAACCCC 59.536 60.000 0.00 0.00 0.00 4.95
172 173 7.559335 AGAGATATGAATATGCAGTAACCCA 57.441 36.000 0.00 0.00 0.00 4.51
182 183 4.810191 TGCAGTAACCCAAAAGTTGTTT 57.190 36.364 0.00 0.00 0.00 2.83
764 776 3.024547 TGTATCAAGAAGGAGGAGACGG 58.975 50.000 0.00 0.00 0.00 4.79
899 913 1.587034 GCGCGTGATCTACAAAGGTAC 59.413 52.381 8.43 0.00 0.00 3.34
1013 1029 6.103997 CCCAACATTTTCATGATCTTTCCAG 58.896 40.000 0.00 0.00 34.11 3.86
1014 1030 6.295462 CCCAACATTTTCATGATCTTTCCAGT 60.295 38.462 0.00 0.00 34.11 4.00
1029 1045 5.544176 TCTTTCCAGTGTATTCCTTGACTCT 59.456 40.000 0.00 0.00 0.00 3.24
1035 1051 2.826128 TGTATTCCTTGACTCTCGTGCT 59.174 45.455 0.00 0.00 0.00 4.40
1036 1052 2.376808 ATTCCTTGACTCTCGTGCTG 57.623 50.000 0.00 0.00 0.00 4.41
1039 1055 0.600557 CCTTGACTCTCGTGCTGAGT 59.399 55.000 6.46 0.00 46.17 3.41
1057 1073 2.100584 GAGTGGTTGTTGCCATGTTTCA 59.899 45.455 0.00 0.00 41.08 2.69
1059 1075 2.801679 GTGGTTGTTGCCATGTTTCATG 59.198 45.455 3.11 3.11 41.08 3.07
1062 1078 1.340088 TGTTGCCATGTTTCATGCCT 58.660 45.000 4.43 0.00 0.00 4.75
1063 1079 2.523245 TGTTGCCATGTTTCATGCCTA 58.477 42.857 4.43 0.00 0.00 3.93
1064 1080 2.492881 TGTTGCCATGTTTCATGCCTAG 59.507 45.455 4.43 0.00 0.00 3.02
1065 1081 2.754552 GTTGCCATGTTTCATGCCTAGA 59.245 45.455 4.43 0.00 0.00 2.43
1068 1084 2.754552 GCCATGTTTCATGCCTAGAACA 59.245 45.455 4.43 0.00 0.00 3.18
1107 1123 5.512753 TGTGCTCACTGATAGATCTTCTC 57.487 43.478 0.00 0.00 0.00 2.87
1114 1130 7.522073 GCTCACTGATAGATCTTCTCGAGAATT 60.522 40.741 27.19 17.82 38.06 2.17
1121 1137 6.135290 AGATCTTCTCGAGAATTCTGTGAG 57.865 41.667 27.19 18.38 38.06 3.51
1130 1146 4.325741 CGAGAATTCTGTGAGCAAGTACAG 59.674 45.833 14.00 0.00 44.31 2.74
1137 1153 4.082517 TCTGTGAGCAAGTACAGATCTCAC 60.083 45.833 20.75 20.75 45.97 3.51
1143 1159 5.798132 AGCAAGTACAGATCTCACATTGAA 58.202 37.500 10.10 0.00 0.00 2.69
1144 1160 5.873712 AGCAAGTACAGATCTCACATTGAAG 59.126 40.000 10.10 0.00 0.00 3.02
1153 1169 9.327628 ACAGATCTCACATTGAAGATATTCTTG 57.672 33.333 1.19 2.34 36.73 3.02
1154 1170 9.543783 CAGATCTCACATTGAAGATATTCTTGA 57.456 33.333 1.19 0.00 36.73 3.02
1178 1206 2.393271 ATGGCCAGAGAAAACGAGAG 57.607 50.000 13.05 0.00 0.00 3.20
1179 1207 0.320771 TGGCCAGAGAAAACGAGAGC 60.321 55.000 0.00 0.00 0.00 4.09
1183 1211 2.164624 GCCAGAGAAAACGAGAGCTCTA 59.835 50.000 18.25 0.00 36.06 2.43
1185 1213 4.420168 CCAGAGAAAACGAGAGCTCTAAG 58.580 47.826 18.25 16.26 36.06 2.18
1186 1214 3.857093 CAGAGAAAACGAGAGCTCTAAGC 59.143 47.826 18.25 3.20 42.84 3.09
1189 1217 2.663826 AAACGAGAGCTCTAAGCAGG 57.336 50.000 18.25 4.63 45.56 4.85
1192 1220 3.216187 ACGAGAGCTCTAAGCAGGATA 57.784 47.619 18.25 0.00 45.56 2.59
1194 1222 3.146066 CGAGAGCTCTAAGCAGGATAGT 58.854 50.000 18.25 0.00 45.56 2.12
1197 1225 4.144297 AGAGCTCTAAGCAGGATAGTGAG 58.856 47.826 16.50 0.00 45.56 3.51
1203 1231 5.273208 TCTAAGCAGGATAGTGAGAAACCT 58.727 41.667 0.00 0.00 0.00 3.50
1204 1232 4.917906 AAGCAGGATAGTGAGAAACCTT 57.082 40.909 0.00 0.00 0.00 3.50
1205 1233 4.213564 AGCAGGATAGTGAGAAACCTTG 57.786 45.455 0.00 0.00 0.00 3.61
1206 1234 3.584848 AGCAGGATAGTGAGAAACCTTGT 59.415 43.478 0.00 0.00 0.00 3.16
1207 1235 4.042187 AGCAGGATAGTGAGAAACCTTGTT 59.958 41.667 0.00 0.00 0.00 2.83
1208 1236 4.154918 GCAGGATAGTGAGAAACCTTGTTG 59.845 45.833 0.00 0.00 0.00 3.33
1209 1237 5.308825 CAGGATAGTGAGAAACCTTGTTGT 58.691 41.667 0.00 0.00 0.00 3.32
1210 1238 5.180117 CAGGATAGTGAGAAACCTTGTTGTG 59.820 44.000 0.00 0.00 0.00 3.33
1211 1239 5.063880 GGATAGTGAGAAACCTTGTTGTGT 58.936 41.667 0.00 0.00 0.00 3.72
1212 1240 5.531287 GGATAGTGAGAAACCTTGTTGTGTT 59.469 40.000 0.00 0.00 0.00 3.32
1213 1241 6.039382 GGATAGTGAGAAACCTTGTTGTGTTT 59.961 38.462 0.00 0.00 37.39 2.83
1214 1242 5.722021 AGTGAGAAACCTTGTTGTGTTTT 57.278 34.783 0.00 0.00 34.97 2.43
1217 1245 3.595173 AGAAACCTTGTTGTGTTTTGGC 58.405 40.909 0.00 0.00 34.97 4.52
1218 1246 3.007398 AGAAACCTTGTTGTGTTTTGGCA 59.993 39.130 0.00 0.00 34.97 4.92
1219 1247 3.625649 AACCTTGTTGTGTTTTGGCAT 57.374 38.095 0.00 0.00 0.00 4.40
1222 1250 3.125316 CCTTGTTGTGTTTTGGCATCAG 58.875 45.455 0.00 0.00 0.00 2.90
1224 1252 3.713858 TGTTGTGTTTTGGCATCAGAG 57.286 42.857 0.00 0.00 0.00 3.35
1225 1253 2.223782 TGTTGTGTTTTGGCATCAGAGC 60.224 45.455 0.00 0.00 0.00 4.09
1233 1261 2.588439 GCATCAGAGCCTCCTGCA 59.412 61.111 6.64 0.00 44.83 4.41
1234 1262 1.524165 GCATCAGAGCCTCCTGCAG 60.524 63.158 6.78 6.78 44.83 4.41
1235 1263 1.524165 CATCAGAGCCTCCTGCAGC 60.524 63.158 8.66 0.00 44.83 5.25
1236 1264 1.993948 ATCAGAGCCTCCTGCAGCA 60.994 57.895 8.66 0.00 44.83 4.41
1237 1265 1.973816 ATCAGAGCCTCCTGCAGCAG 61.974 60.000 16.23 16.23 44.83 4.24
1238 1266 2.284478 AGAGCCTCCTGCAGCAGA 60.284 61.111 24.90 9.04 44.83 4.26
1239 1267 2.187424 GAGCCTCCTGCAGCAGAG 59.813 66.667 24.90 17.51 44.83 3.35
1240 1268 4.098722 AGCCTCCTGCAGCAGAGC 62.099 66.667 24.90 21.41 44.83 4.09
1241 1269 4.405671 GCCTCCTGCAGCAGAGCA 62.406 66.667 24.90 6.25 43.35 4.26
1242 1270 2.350134 CCTCCTGCAGCAGAGCAA 59.650 61.111 24.90 5.36 45.13 3.91
1243 1271 1.745864 CCTCCTGCAGCAGAGCAAG 60.746 63.158 24.90 14.16 45.13 4.01
1244 1272 1.295746 CTCCTGCAGCAGAGCAAGA 59.704 57.895 24.90 10.84 45.13 3.02
1245 1273 0.321387 CTCCTGCAGCAGAGCAAGAA 60.321 55.000 24.90 0.00 45.13 2.52
1246 1274 0.109153 TCCTGCAGCAGAGCAAGAAA 59.891 50.000 24.90 0.00 45.13 2.52
1247 1275 0.956633 CCTGCAGCAGAGCAAGAAAA 59.043 50.000 24.90 0.00 45.13 2.29
1248 1276 1.068472 CCTGCAGCAGAGCAAGAAAAG 60.068 52.381 24.90 0.00 45.13 2.27
1249 1277 1.878088 CTGCAGCAGAGCAAGAAAAGA 59.122 47.619 18.42 0.00 45.13 2.52
1250 1278 2.292569 CTGCAGCAGAGCAAGAAAAGAA 59.707 45.455 18.42 0.00 45.13 2.52
1251 1279 2.889045 TGCAGCAGAGCAAGAAAAGAAT 59.111 40.909 0.00 0.00 42.46 2.40
1268 1296 7.881232 AGAAAAGAATCCACGTTATCCTTTACA 59.119 33.333 0.00 0.00 0.00 2.41
1269 1297 8.575649 AAAAGAATCCACGTTATCCTTTACAT 57.424 30.769 0.00 0.00 0.00 2.29
1274 1302 5.424757 TCCACGTTATCCTTTACATTCCAG 58.575 41.667 0.00 0.00 0.00 3.86
1277 1305 6.106673 CACGTTATCCTTTACATTCCAGTCT 58.893 40.000 0.00 0.00 0.00 3.24
1281 1309 7.010552 CGTTATCCTTTACATTCCAGTCTCAAG 59.989 40.741 0.00 0.00 0.00 3.02
1297 1325 7.326454 CAGTCTCAAGTCCAAAGATCATCTTA 58.674 38.462 0.00 0.00 35.27 2.10
1298 1326 7.277539 CAGTCTCAAGTCCAAAGATCATCTTAC 59.722 40.741 0.00 0.00 35.27 2.34
1301 1329 7.009179 TCAAGTCCAAAGATCATCTTACTGT 57.991 36.000 0.00 0.00 35.27 3.55
1309 1337 6.969993 AAGATCATCTTACTGTACCTCTCC 57.030 41.667 0.00 0.00 34.42 3.71
1311 1339 3.552875 TCATCTTACTGTACCTCTCCCG 58.447 50.000 0.00 0.00 0.00 5.14
1329 1357 1.675219 GGTGTTCCGGAAGCCAGTA 59.325 57.895 25.00 0.00 0.00 2.74
1332 1360 0.320374 TGTTCCGGAAGCCAGTACAG 59.680 55.000 19.50 0.00 0.00 2.74
1337 1365 1.066143 CCGGAAGCCAGTACAGAACAT 60.066 52.381 0.00 0.00 0.00 2.71
1347 1375 4.318332 CAGTACAGAACATGCCTGAAGAA 58.682 43.478 18.97 3.05 34.60 2.52
1365 1393 5.773176 TGAAGAAGGGGAAAAAGAATACCAC 59.227 40.000 0.00 0.00 0.00 4.16
1370 1398 3.513912 GGGGAAAAAGAATACCACAAGGG 59.486 47.826 0.00 0.00 44.81 3.95
1371 1399 3.513912 GGGAAAAAGAATACCACAAGGGG 59.486 47.826 0.00 0.00 42.91 4.79
1392 1420 2.618816 GGGATGGTGTGATTCTGAAGCA 60.619 50.000 3.91 3.91 0.00 3.91
1405 1433 1.534595 CTGAAGCACTGAAGGAAGCAC 59.465 52.381 0.00 0.00 0.00 4.40
1408 1436 0.036022 AGCACTGAAGGAAGCACTCC 59.964 55.000 0.00 0.00 45.81 3.85
1419 1447 0.900647 AAGCACTCCGAGTACTGCCT 60.901 55.000 0.00 0.00 0.00 4.75
1425 1453 2.367567 ACTCCGAGTACTGCCTTTCAAA 59.632 45.455 0.00 0.00 0.00 2.69
1471 1499 1.815421 CTCTCGGGGGATTTGTGCG 60.815 63.158 0.00 0.00 0.00 5.34
1491 1519 4.031028 GCGATTGCATTGAGACATTGTAC 58.969 43.478 0.00 0.00 42.15 2.90
1492 1520 4.591202 CGATTGCATTGAGACATTGTACC 58.409 43.478 0.00 0.00 0.00 3.34
1519 1547 8.180706 TGATCATCCAAGAAATTCAGAAACAA 57.819 30.769 0.00 0.00 0.00 2.83
1523 1551 6.060028 TCCAAGAAATTCAGAAACAAGACG 57.940 37.500 0.00 0.00 0.00 4.18
1524 1552 4.676924 CCAAGAAATTCAGAAACAAGACGC 59.323 41.667 0.00 0.00 0.00 5.19
1542 1570 3.659786 ACGCAGTTTTCAGTGTATGCTA 58.340 40.909 0.00 0.00 37.78 3.49
1549 1577 5.934625 AGTTTTCAGTGTATGCTAGAAGTGG 59.065 40.000 0.00 0.00 0.00 4.00
1554 1582 4.867047 CAGTGTATGCTAGAAGTGGTTGAG 59.133 45.833 0.00 0.00 0.00 3.02
1578 1606 8.181904 AGTTGATCAAAATTCTTCCTGCTTTA 57.818 30.769 10.35 0.00 0.00 1.85
1592 1620 7.500892 TCTTCCTGCTTTAATAAACTGTGACAA 59.499 33.333 0.00 0.00 0.00 3.18
1630 1658 5.752036 ATGGTCTGATGAACTTCTTGAGA 57.248 39.130 0.00 0.00 0.00 3.27
1632 1660 4.835056 TGGTCTGATGAACTTCTTGAGAGA 59.165 41.667 0.00 0.00 0.00 3.10
1636 1664 7.151308 GTCTGATGAACTTCTTGAGAGAAAGA 58.849 38.462 0.00 0.00 41.19 2.52
1639 1667 8.994429 TGATGAACTTCTTGAGAGAAAGATAC 57.006 34.615 0.00 0.00 41.19 2.24
1644 1672 9.651913 GAACTTCTTGAGAGAAAGATACAAGAT 57.348 33.333 0.00 0.00 43.66 2.40
1646 1674 8.040132 ACTTCTTGAGAGAAAGATACAAGATGG 58.960 37.037 18.09 12.53 43.66 3.51
1647 1675 7.487822 TCTTGAGAGAAAGATACAAGATGGT 57.512 36.000 0.00 0.00 40.86 3.55
1648 1676 7.326454 TCTTGAGAGAAAGATACAAGATGGTG 58.674 38.462 0.00 0.00 40.86 4.17
1651 1679 5.738909 AGAGAAAGATACAAGATGGTGGTG 58.261 41.667 0.00 0.00 0.00 4.17
1658 1686 1.628846 ACAAGATGGTGGTGACCCTAC 59.371 52.381 0.00 0.00 42.34 3.18
1661 1689 2.632537 AGATGGTGGTGACCCTACTTT 58.367 47.619 0.00 0.00 42.34 2.66
1662 1690 2.305927 AGATGGTGGTGACCCTACTTTG 59.694 50.000 0.00 0.00 42.34 2.77
1667 1695 0.953960 GGTGACCCTACTTTGTGGCG 60.954 60.000 0.00 0.00 0.00 5.69
1672 1700 0.673644 CCCTACTTTGTGGCGTGAGG 60.674 60.000 0.00 0.00 0.00 3.86
1677 1705 1.294659 CTTTGTGGCGTGAGGAGCTC 61.295 60.000 4.71 4.71 34.52 4.09
1710 1738 6.375174 TGCAGACTAACACATGCAATAAATCT 59.625 34.615 0.00 0.00 45.09 2.40
1720 1748 7.394359 ACACATGCAATAAATCTAAGTTCAGGT 59.606 33.333 0.00 0.00 0.00 4.00
1747 1775 1.537202 GATCCCTGTGTGTGCAAGAAC 59.463 52.381 0.00 0.00 0.00 3.01
1773 1801 9.482627 CTAAGATATCTTGTTGATAACCTGGAC 57.517 37.037 25.22 0.00 40.62 4.02
1793 1821 4.220602 GGACCTTCCAAATTGTTACAGCAT 59.779 41.667 0.00 0.00 36.28 3.79
1794 1822 5.417580 GGACCTTCCAAATTGTTACAGCATA 59.582 40.000 0.00 0.00 36.28 3.14
1796 1824 7.296628 ACCTTCCAAATTGTTACAGCATAAA 57.703 32.000 0.00 0.00 0.00 1.40
1797 1825 7.731054 ACCTTCCAAATTGTTACAGCATAAAA 58.269 30.769 0.00 0.00 0.00 1.52
1816 1844 9.860898 GCATAAAAGAAATTCAATTCTACCTGT 57.139 29.630 0.00 0.00 38.69 4.00
1821 1849 7.288810 AGAAATTCAATTCTACCTGTTGCAA 57.711 32.000 0.00 0.00 37.88 4.08
1826 1854 5.376625 TCAATTCTACCTGTTGCAAAGAGT 58.623 37.500 0.00 0.78 35.02 3.24
1857 1885 3.230976 TCTCTGTACAGTTTCCAGCTCA 58.769 45.455 21.99 0.00 0.00 4.26
1901 1929 6.466904 CCCATGGACAATTCTCCTTCAGATAT 60.467 42.308 15.22 0.00 0.00 1.63
1906 1934 7.016957 TGGACAATTCTCCTTCAGATATATGCT 59.983 37.037 1.18 0.00 0.00 3.79
1907 1935 7.333921 GGACAATTCTCCTTCAGATATATGCTG 59.666 40.741 0.00 0.00 34.71 4.41
1908 1936 7.166851 ACAATTCTCCTTCAGATATATGCTGG 58.833 38.462 10.42 0.00 34.20 4.85
1921 1952 2.664402 ATGCTGGTTGGTCAAGAAGT 57.336 45.000 0.00 0.00 0.00 3.01
1934 1965 5.354234 TGGTCAAGAAGTCTGAAAAGTTGAC 59.646 40.000 12.37 12.37 40.91 3.18
1983 2017 3.540617 TGCACAGCTTAAAGAGTGTGAA 58.459 40.909 13.23 2.42 38.53 3.18
1995 2029 8.990163 TTAAAGAGTGTGAAACCTTAATTCCT 57.010 30.769 0.00 0.00 34.36 3.36
2015 2049 1.317431 TTGCAGCTGCCAGGCATAAG 61.317 55.000 34.64 8.70 38.13 1.73
2082 2116 9.109393 CTGGTGAAAAGCAAAGTAAGCTATATA 57.891 33.333 0.00 0.00 42.53 0.86
2107 2141 7.750229 TGTTGACTATTCTCTGCTTTCATTT 57.250 32.000 0.00 0.00 0.00 2.32
2108 2142 8.846943 TGTTGACTATTCTCTGCTTTCATTTA 57.153 30.769 0.00 0.00 0.00 1.40
2219 2253 6.157994 TGAGAGGTTAAGTATGCTGGGTTATT 59.842 38.462 0.00 0.00 0.00 1.40
2338 2372 7.144661 CCAATGTCACTACTAAGAGCTATGAG 58.855 42.308 0.00 0.00 0.00 2.90
2424 2458 1.597854 CAACTGAGAAGCACGGGCA 60.598 57.895 14.57 0.00 44.61 5.36
2426 2460 0.957395 AACTGAGAAGCACGGGCATG 60.957 55.000 14.57 0.00 44.61 4.06
2429 2463 3.984193 GAGAAGCACGGGCATGGCT 62.984 63.158 14.57 2.20 44.61 4.75
2430 2464 3.818787 GAAGCACGGGCATGGCTG 61.819 66.667 25.50 25.50 44.61 4.85
2462 2496 2.238353 GAAGCTGCTGCAGTTTCGA 58.762 52.632 32.99 0.00 40.59 3.71
2502 2536 7.266922 TGTTCAAAGGTAACCAACAGTATTC 57.733 36.000 0.00 0.00 37.17 1.75
2504 2538 7.012894 TGTTCAAAGGTAACCAACAGTATTCAG 59.987 37.037 0.00 0.00 37.17 3.02
2507 2541 4.817517 AGGTAACCAACAGTATTCAGTCG 58.182 43.478 0.00 0.00 37.17 4.18
2509 2543 4.387862 GGTAACCAACAGTATTCAGTCGTG 59.612 45.833 0.00 0.00 0.00 4.35
2510 2544 3.040147 ACCAACAGTATTCAGTCGTGG 57.960 47.619 0.00 0.00 0.00 4.94
2511 2545 2.367567 ACCAACAGTATTCAGTCGTGGT 59.632 45.455 0.00 0.00 0.00 4.16
2512 2546 3.575256 ACCAACAGTATTCAGTCGTGGTA 59.425 43.478 0.00 0.00 0.00 3.25
2513 2547 3.924686 CCAACAGTATTCAGTCGTGGTAC 59.075 47.826 0.00 0.00 0.00 3.34
2576 2620 5.186021 AGGTTGTGTTTTGGTTTGTCACATA 59.814 36.000 0.00 0.00 38.50 2.29
2578 2622 4.677584 TGTGTTTTGGTTTGTCACATAGC 58.322 39.130 0.00 0.00 34.74 2.97
2602 2650 6.402550 GCGAAAGTCATGAAAGCAAGAGATTA 60.403 38.462 0.00 0.00 0.00 1.75
2603 2651 7.678218 GCGAAAGTCATGAAAGCAAGAGATTAT 60.678 37.037 0.00 0.00 0.00 1.28
2618 2666 7.148018 GCAAGAGATTATTTGAGGGAAATGACA 60.148 37.037 0.00 0.00 35.74 3.58
2619 2667 8.404000 CAAGAGATTATTTGAGGGAAATGACAG 58.596 37.037 0.00 0.00 35.74 3.51
2622 2670 7.177878 AGATTATTTGAGGGAAATGACAGTGT 58.822 34.615 0.00 0.00 35.74 3.55
2625 2673 6.575162 ATTTGAGGGAAATGACAGTGTTAC 57.425 37.500 0.00 0.00 32.69 2.50
2656 2704 5.973651 TTAATGTGCTGCGAATAAGAGAG 57.026 39.130 0.00 0.00 0.00 3.20
2686 2736 9.182214 AGTCTATGAATTTGCAGTCATAAATGT 57.818 29.630 14.24 2.52 39.02 2.71
2690 2740 7.640616 TGAATTTGCAGTCATAAATGTTGTG 57.359 32.000 0.00 0.00 0.00 3.33
2691 2741 6.145858 TGAATTTGCAGTCATAAATGTTGTGC 59.854 34.615 0.00 6.86 33.01 4.57
2692 2742 3.200294 TGCAGTCATAAATGTTGTGCG 57.800 42.857 0.00 0.00 34.17 5.34
2693 2743 2.810852 TGCAGTCATAAATGTTGTGCGA 59.189 40.909 0.00 0.00 34.17 5.10
2694 2744 3.120234 TGCAGTCATAAATGTTGTGCGAG 60.120 43.478 0.00 0.00 34.17 5.03
2715 2765 1.283321 GGGGGAAGAGAAATGTGAGCT 59.717 52.381 0.00 0.00 0.00 4.09
2719 2769 4.637977 GGGGAAGAGAAATGTGAGCTAAAG 59.362 45.833 0.00 0.00 0.00 1.85
2723 2773 6.534793 GGAAGAGAAATGTGAGCTAAAGAGAG 59.465 42.308 0.00 0.00 0.00 3.20
2726 2776 7.675062 AGAGAAATGTGAGCTAAAGAGAGAAA 58.325 34.615 0.00 0.00 0.00 2.52
2727 2777 8.153550 AGAGAAATGTGAGCTAAAGAGAGAAAA 58.846 33.333 0.00 0.00 0.00 2.29
2729 2779 8.728833 AGAAATGTGAGCTAAAGAGAGAAAATG 58.271 33.333 0.00 0.00 0.00 2.32
2730 2780 7.992754 AATGTGAGCTAAAGAGAGAAAATGT 57.007 32.000 0.00 0.00 0.00 2.71
2731 2781 7.992754 ATGTGAGCTAAAGAGAGAAAATGTT 57.007 32.000 0.00 0.00 0.00 2.71
2732 2782 7.194607 TGTGAGCTAAAGAGAGAAAATGTTG 57.805 36.000 0.00 0.00 0.00 3.33
2735 2833 7.387948 GTGAGCTAAAGAGAGAAAATGTTGGTA 59.612 37.037 0.00 0.00 0.00 3.25
2761 2859 9.539194 ACAATATTTTTGAGAGGAAGGAGAAAT 57.461 29.630 0.00 0.00 0.00 2.17
2785 2883 9.618890 AATAATTAGTATGCTGTTCTGTGATGT 57.381 29.630 0.00 0.00 0.00 3.06
2787 2885 8.425577 AATTAGTATGCTGTTCTGTGATGTAC 57.574 34.615 0.00 0.00 0.00 2.90
2825 2931 2.567615 CCACTAGTAGCTTGTCCTTGGT 59.432 50.000 0.00 0.00 0.00 3.67
2833 2939 1.972872 CTTGTCCTTGGTTCACTGCT 58.027 50.000 0.00 0.00 0.00 4.24
2892 3005 7.989741 TCATTCTCTACAGGAATCAAAATCTCC 59.010 37.037 0.00 0.00 31.90 3.71
2967 3080 5.303845 ACTTGGGAAATCCTACGATAGGTAC 59.696 44.000 9.84 0.00 46.32 3.34
2979 3092 2.598439 CGATAGGTACGACGGTTTCTCG 60.598 54.545 0.00 0.00 37.17 4.04
3091 3204 3.248266 GGATTTCTCACAAACATGCAGC 58.752 45.455 0.00 0.00 0.00 5.25
3151 3264 2.249139 GGTAGCTCGATTCCAGGGTAT 58.751 52.381 0.00 0.00 0.00 2.73
3160 3274 3.694072 CGATTCCAGGGTATCTGCAAAAA 59.306 43.478 3.85 0.00 42.05 1.94
3161 3275 4.339247 CGATTCCAGGGTATCTGCAAAAAT 59.661 41.667 3.85 0.00 42.05 1.82
3163 3277 4.314522 TCCAGGGTATCTGCAAAAATGA 57.685 40.909 0.00 0.00 42.05 2.57
3205 3343 6.701400 CCTTGTGGTCTTCCAAATTTAACTTG 59.299 38.462 0.00 0.00 46.15 3.16
3265 3435 6.318648 TGAATCCACCAGTATCACTTTTATGC 59.681 38.462 0.00 0.00 0.00 3.14
3280 3450 7.014711 TCACTTTTATGCCACAAAACTTCCATA 59.985 33.333 0.00 0.00 0.00 2.74
3302 3472 8.966868 CCATATAGTTGGAATTACTGTTGGTTT 58.033 33.333 0.00 0.00 39.25 3.27
3468 3640 1.135315 CAAAGATGCGCAAGACCGG 59.865 57.895 17.11 0.00 43.02 5.28
3492 3664 4.556942 TTGCTATTTTGATGCCGATGAG 57.443 40.909 0.00 0.00 0.00 2.90
3502 3674 2.787473 TGCCGATGAGGACAAAGATT 57.213 45.000 0.00 0.00 45.00 2.40
3525 3697 4.081406 TGTCAAATGCAGTATTCAAGGCT 58.919 39.130 0.00 0.00 0.00 4.58
3559 3731 4.083271 TCGACGATGCTGATAATCTAGTGG 60.083 45.833 0.00 0.00 0.00 4.00
3560 3732 4.083271 CGACGATGCTGATAATCTAGTGGA 60.083 45.833 0.00 0.00 0.00 4.02
3561 3733 5.562890 CGACGATGCTGATAATCTAGTGGAA 60.563 44.000 0.00 0.00 0.00 3.53
3596 3768 3.492102 TGATATAGGCAAGCCAAGGTC 57.508 47.619 14.40 6.72 38.92 3.85
3605 3777 2.170607 GCAAGCCAAGGTCTCAGGTATA 59.829 50.000 0.00 0.00 0.00 1.47
3616 3788 4.324331 GGTCTCAGGTATAACCAAAAGCCT 60.324 45.833 0.00 0.00 41.95 4.58
3651 3823 5.186603 AGCTCATCATACGGACATGTCATAT 59.813 40.000 26.47 19.21 0.00 1.78
3652 3824 6.378280 AGCTCATCATACGGACATGTCATATA 59.622 38.462 26.47 15.21 0.00 0.86
3701 3873 4.729458 GCAAGTGTGAGCTAACGTTTTTCA 60.729 41.667 5.91 5.54 0.00 2.69
3896 4084 0.721154 GATGCACGTTTGATCGCTGA 59.279 50.000 0.00 0.00 0.00 4.26
3905 4093 2.462456 TTGATCGCTGAAGCTCAGTT 57.538 45.000 12.71 1.94 45.94 3.16
3908 4096 0.321034 ATCGCTGAAGCTCAGTTGCA 60.321 50.000 12.71 0.00 45.94 4.08
3910 4098 0.520404 CGCTGAAGCTCAGTTGCATT 59.480 50.000 12.71 0.00 45.94 3.56
3912 4100 1.811359 GCTGAAGCTCAGTTGCATTCT 59.189 47.619 12.71 0.00 45.94 2.40
3914 4102 1.538512 TGAAGCTCAGTTGCATTCTGC 59.461 47.619 12.65 3.51 45.29 4.26
3916 4104 2.775911 AGCTCAGTTGCATTCTGCTA 57.224 45.000 12.65 0.00 45.31 3.49
3917 4105 3.063510 AGCTCAGTTGCATTCTGCTAA 57.936 42.857 12.65 0.00 45.31 3.09
3918 4106 3.008330 AGCTCAGTTGCATTCTGCTAAG 58.992 45.455 12.65 7.86 45.31 2.18
3920 4108 3.063725 GCTCAGTTGCATTCTGCTAAGAG 59.936 47.826 12.65 5.57 45.31 2.85
3921 4109 3.005554 TCAGTTGCATTCTGCTAAGAGC 58.994 45.455 12.65 0.00 45.31 4.09
3924 4112 3.198635 AGTTGCATTCTGCTAAGAGCCTA 59.801 43.478 0.34 0.00 45.31 3.93
3925 4113 3.912496 TGCATTCTGCTAAGAGCCTAA 57.088 42.857 0.34 0.00 45.31 2.69
3926 4114 3.801698 TGCATTCTGCTAAGAGCCTAAG 58.198 45.455 0.34 0.00 45.31 2.18
3928 4116 3.807071 GCATTCTGCTAAGAGCCTAAGAC 59.193 47.826 0.00 0.00 41.51 3.01
3930 4118 4.727507 TTCTGCTAAGAGCCTAAGACTG 57.272 45.455 0.00 0.00 41.51 3.51
3933 4132 5.696030 TCTGCTAAGAGCCTAAGACTGATA 58.304 41.667 0.00 0.00 41.51 2.15
3944 4143 9.471084 GAGCCTAAGACTGATAGAACTTTTATC 57.529 37.037 0.00 0.00 0.00 1.75
3953 4152 8.043710 ACTGATAGAACTTTTATCCTGGACAAG 58.956 37.037 0.00 4.58 0.00 3.16
3974 4173 8.068893 ACAAGACGTTGTTAATTACAGTACTG 57.931 34.615 21.44 21.44 45.00 2.74
3975 4174 7.707893 ACAAGACGTTGTTAATTACAGTACTGT 59.292 33.333 30.13 30.13 45.00 3.55
3976 4175 9.184062 CAAGACGTTGTTAATTACAGTACTGTA 57.816 33.333 27.99 27.99 44.42 2.74
3977 4176 8.961294 AGACGTTGTTAATTACAGTACTGTAG 57.039 34.615 29.34 19.19 45.57 2.74
3978 4177 8.025445 AGACGTTGTTAATTACAGTACTGTAGG 58.975 37.037 29.34 18.50 45.57 3.18
3979 4178 7.885297 ACGTTGTTAATTACAGTACTGTAGGA 58.115 34.615 29.34 19.67 45.57 2.94
3980 4179 8.025445 ACGTTGTTAATTACAGTACTGTAGGAG 58.975 37.037 29.34 18.01 45.57 3.69
3981 4180 8.025445 CGTTGTTAATTACAGTACTGTAGGAGT 58.975 37.037 29.34 20.07 45.57 3.85
4003 4205 1.304630 ATGCAGCTGGAATGTGGCA 60.305 52.632 13.45 2.18 35.54 4.92
4017 4219 2.226330 TGTGGCACGAAACAGCTTATT 58.774 42.857 13.77 0.00 0.00 1.40
4018 4220 3.403968 TGTGGCACGAAACAGCTTATTA 58.596 40.909 13.77 0.00 0.00 0.98
4019 4221 4.006989 TGTGGCACGAAACAGCTTATTAT 58.993 39.130 13.77 0.00 0.00 1.28
4024 4226 5.294552 GGCACGAAACAGCTTATTATCTCTT 59.705 40.000 0.00 0.00 0.00 2.85
4029 4231 7.221067 ACGAAACAGCTTATTATCTCTTTCTCG 59.779 37.037 0.00 0.00 0.00 4.04
4060 4262 1.813513 CCGAAACAGCTTCTCACCAT 58.186 50.000 0.00 0.00 31.20 3.55
4062 4264 3.535561 CCGAAACAGCTTCTCACCATAT 58.464 45.455 0.00 0.00 31.20 1.78
4069 4271 6.491714 ACAGCTTCTCACCATATATTCAGT 57.508 37.500 0.00 0.00 0.00 3.41
4070 4272 6.286758 ACAGCTTCTCACCATATATTCAGTG 58.713 40.000 0.00 2.26 0.00 3.66
4071 4273 5.699915 CAGCTTCTCACCATATATTCAGTGG 59.300 44.000 7.22 0.00 38.96 4.00
4072 4274 5.367937 AGCTTCTCACCATATATTCAGTGGT 59.632 40.000 7.22 0.00 46.72 4.16
4073 4275 6.058183 GCTTCTCACCATATATTCAGTGGTT 58.942 40.000 7.22 0.00 43.44 3.67
4074 4276 6.203723 GCTTCTCACCATATATTCAGTGGTTC 59.796 42.308 7.22 0.00 43.44 3.62
4075 4277 6.806668 TCTCACCATATATTCAGTGGTTCA 57.193 37.500 7.22 0.00 43.44 3.18
4076 4278 6.820335 TCTCACCATATATTCAGTGGTTCAG 58.180 40.000 7.22 0.00 43.44 3.02
4077 4279 6.611236 TCTCACCATATATTCAGTGGTTCAGA 59.389 38.462 7.22 0.00 43.44 3.27
4078 4280 6.582636 TCACCATATATTCAGTGGTTCAGAC 58.417 40.000 7.22 0.00 43.44 3.51
4094 4303 6.942005 TGGTTCAGACTTTATTCATCACACAT 59.058 34.615 0.00 0.00 0.00 3.21
4501 4710 2.929641 TCATCTTTGCGGCCATGATAA 58.070 42.857 2.24 0.00 0.00 1.75
4525 4734 1.834896 TGCTAAGGGTAGAAATGGCGA 59.165 47.619 0.00 0.00 0.00 5.54
4541 4750 2.307686 TGGCGATACCTTTTCCCTTCTT 59.692 45.455 0.00 0.00 40.22 2.52
4575 4786 1.078709 CATCATGCGTGTTCGGTTCT 58.921 50.000 5.68 0.00 37.56 3.01
4576 4787 1.464608 CATCATGCGTGTTCGGTTCTT 59.535 47.619 5.68 0.00 37.56 2.52
4602 4813 4.938575 TTATAGGTGAAGCCAAAAGGGA 57.061 40.909 0.00 0.00 40.01 4.20
4604 4815 2.001076 AGGTGAAGCCAAAAGGGAAG 57.999 50.000 0.00 0.00 40.01 3.46
4606 4817 1.704641 GTGAAGCCAAAAGGGAAGGT 58.295 50.000 0.00 0.00 40.01 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 5.392811 CGAACCTTAAGTGTGTAGACCCTAG 60.393 48.000 0.97 0.00 0.00 3.02
172 173 2.028876 CCGGGACTCCAAACAACTTTT 58.971 47.619 0.00 0.00 0.00 2.27
182 183 0.470080 GGATCTCATCCGGGACTCCA 60.470 60.000 0.00 0.00 40.13 3.86
513 521 4.817909 AACTCCTAGGGGGCGGGG 62.818 72.222 14.80 0.00 34.39 5.73
514 522 3.162154 GAACTCCTAGGGGGCGGG 61.162 72.222 14.80 0.00 34.39 6.13
515 523 3.162154 GGAACTCCTAGGGGGCGG 61.162 72.222 14.80 0.00 34.39 6.13
516 524 3.162154 GGGAACTCCTAGGGGGCG 61.162 72.222 14.80 0.14 35.95 6.13
517 525 1.386057 ATGGGAACTCCTAGGGGGC 60.386 63.158 14.80 4.24 36.20 5.80
529 537 1.459539 CGGCCCTAGGAGATGGGAA 60.460 63.158 11.48 0.00 46.15 3.97
701 713 0.538584 TGAAGATCCAGCAGCACGAT 59.461 50.000 0.00 0.00 0.00 3.73
764 776 3.467119 CACGTACGGTCAGCGTGC 61.467 66.667 21.06 10.23 46.86 5.34
844 857 1.108776 CGGGGATGAGGAAGTCGTAA 58.891 55.000 0.00 0.00 0.00 3.18
899 913 2.983136 GAGTGATCGGATTGCATCTACG 59.017 50.000 0.00 0.00 0.00 3.51
1029 1045 1.436195 GCAACAACCACTCAGCACGA 61.436 55.000 0.00 0.00 0.00 4.35
1062 1078 1.065199 CAATGCCTCCAGCCTGTTCTA 60.065 52.381 0.00 0.00 42.71 2.10
1063 1079 0.323178 CAATGCCTCCAGCCTGTTCT 60.323 55.000 0.00 0.00 42.71 3.01
1064 1080 1.941999 GCAATGCCTCCAGCCTGTTC 61.942 60.000 0.00 0.00 42.71 3.18
1065 1081 1.980772 GCAATGCCTCCAGCCTGTT 60.981 57.895 0.00 0.00 42.71 3.16
1068 1084 1.681327 CAAGCAATGCCTCCAGCCT 60.681 57.895 0.00 0.00 42.71 4.58
1071 1087 1.214589 GCACAAGCAATGCCTCCAG 59.785 57.895 0.00 0.00 41.58 3.86
1107 1123 4.237724 TGTACTTGCTCACAGAATTCTCG 58.762 43.478 4.57 4.27 0.00 4.04
1121 1137 5.871524 TCTTCAATGTGAGATCTGTACTTGC 59.128 40.000 0.00 0.00 0.00 4.01
1155 1171 3.888930 TCTCGTTTTCTCTGGCCATTTTT 59.111 39.130 5.51 0.00 0.00 1.94
1156 1172 3.486383 TCTCGTTTTCTCTGGCCATTTT 58.514 40.909 5.51 0.00 0.00 1.82
1157 1173 3.077359 CTCTCGTTTTCTCTGGCCATTT 58.923 45.455 5.51 0.00 0.00 2.32
1158 1174 2.704572 CTCTCGTTTTCTCTGGCCATT 58.295 47.619 5.51 0.00 0.00 3.16
1159 1175 1.677217 GCTCTCGTTTTCTCTGGCCAT 60.677 52.381 5.51 0.00 0.00 4.40
1160 1176 0.320771 GCTCTCGTTTTCTCTGGCCA 60.321 55.000 4.71 4.71 0.00 5.36
1161 1177 0.036858 AGCTCTCGTTTTCTCTGGCC 60.037 55.000 0.00 0.00 0.00 5.36
1162 1178 1.067213 AGAGCTCTCGTTTTCTCTGGC 60.067 52.381 11.45 0.00 34.87 4.85
1163 1179 4.420168 CTTAGAGCTCTCGTTTTCTCTGG 58.580 47.826 22.17 0.00 36.65 3.86
1164 1180 3.857093 GCTTAGAGCTCTCGTTTTCTCTG 59.143 47.826 22.17 0.82 38.45 3.35
1173 1201 3.058293 CACTATCCTGCTTAGAGCTCTCG 60.058 52.174 22.17 13.91 42.97 4.04
1178 1206 4.927978 TTCTCACTATCCTGCTTAGAGC 57.072 45.455 0.00 0.00 42.82 4.09
1179 1207 5.362430 AGGTTTCTCACTATCCTGCTTAGAG 59.638 44.000 0.00 0.00 0.00 2.43
1183 1211 4.042187 ACAAGGTTTCTCACTATCCTGCTT 59.958 41.667 0.00 0.00 0.00 3.91
1185 1213 3.944087 ACAAGGTTTCTCACTATCCTGC 58.056 45.455 0.00 0.00 0.00 4.85
1186 1214 5.180117 CACAACAAGGTTTCTCACTATCCTG 59.820 44.000 0.00 0.00 0.00 3.86
1189 1217 6.619801 AACACAACAAGGTTTCTCACTATC 57.380 37.500 0.00 0.00 0.00 2.08
1192 1220 5.469479 CAAAACACAACAAGGTTTCTCACT 58.531 37.500 0.00 0.00 36.28 3.41
1194 1222 4.815269 CCAAAACACAACAAGGTTTCTCA 58.185 39.130 0.00 0.00 36.28 3.27
1197 1225 3.330267 TGCCAAAACACAACAAGGTTTC 58.670 40.909 0.00 0.00 36.28 2.78
1203 1231 3.737663 GCTCTGATGCCAAAACACAACAA 60.738 43.478 0.00 0.00 0.00 2.83
1204 1232 2.223782 GCTCTGATGCCAAAACACAACA 60.224 45.455 0.00 0.00 0.00 3.33
1205 1233 2.397549 GCTCTGATGCCAAAACACAAC 58.602 47.619 0.00 0.00 0.00 3.32
1206 1234 2.798976 GCTCTGATGCCAAAACACAA 57.201 45.000 0.00 0.00 0.00 3.33
1217 1245 1.524165 GCTGCAGGAGGCTCTGATG 60.524 63.158 17.12 11.86 45.15 3.07
1218 1246 1.973816 CTGCTGCAGGAGGCTCTGAT 61.974 60.000 26.30 0.00 45.15 2.90
1219 1247 2.605601 TGCTGCAGGAGGCTCTGA 60.606 61.111 17.12 1.37 45.15 3.27
1222 1250 2.187424 CTCTGCTGCAGGAGGCTC 59.813 66.667 31.75 5.78 45.15 4.70
1224 1252 3.914579 TTGCTCTGCTGCAGGAGGC 62.915 63.158 31.75 30.15 44.27 4.70
1225 1253 1.745864 CTTGCTCTGCTGCAGGAGG 60.746 63.158 31.75 23.19 44.27 4.30
1228 1256 0.956633 TTTTCTTGCTCTGCTGCAGG 59.043 50.000 27.79 19.23 44.27 4.85
1230 1258 1.971481 TCTTTTCTTGCTCTGCTGCA 58.029 45.000 0.88 0.88 41.65 4.41
1231 1259 3.500014 GATTCTTTTCTTGCTCTGCTGC 58.500 45.455 0.00 0.00 0.00 5.25
1233 1261 3.505293 GTGGATTCTTTTCTTGCTCTGCT 59.495 43.478 0.00 0.00 0.00 4.24
1234 1262 3.669023 CGTGGATTCTTTTCTTGCTCTGC 60.669 47.826 0.00 0.00 0.00 4.26
1235 1263 3.499918 ACGTGGATTCTTTTCTTGCTCTG 59.500 43.478 0.00 0.00 0.00 3.35
1236 1264 3.744660 ACGTGGATTCTTTTCTTGCTCT 58.255 40.909 0.00 0.00 0.00 4.09
1237 1265 4.489679 AACGTGGATTCTTTTCTTGCTC 57.510 40.909 0.00 0.00 0.00 4.26
1238 1266 5.123979 GGATAACGTGGATTCTTTTCTTGCT 59.876 40.000 0.00 0.00 0.00 3.91
1239 1267 5.123979 AGGATAACGTGGATTCTTTTCTTGC 59.876 40.000 0.00 0.00 0.00 4.01
1240 1268 6.743575 AGGATAACGTGGATTCTTTTCTTG 57.256 37.500 0.00 0.00 0.00 3.02
1241 1269 7.761038 AAAGGATAACGTGGATTCTTTTCTT 57.239 32.000 10.02 0.00 29.32 2.52
1242 1270 7.881232 TGTAAAGGATAACGTGGATTCTTTTCT 59.119 33.333 17.69 2.44 34.56 2.52
1243 1271 8.036273 TGTAAAGGATAACGTGGATTCTTTTC 57.964 34.615 17.69 14.32 34.56 2.29
1244 1272 7.989416 TGTAAAGGATAACGTGGATTCTTTT 57.011 32.000 17.69 10.63 34.56 2.27
1245 1273 8.575649 AATGTAAAGGATAACGTGGATTCTTT 57.424 30.769 16.99 16.99 36.35 2.52
1246 1274 7.282450 GGAATGTAAAGGATAACGTGGATTCTT 59.718 37.037 0.00 0.00 0.00 2.52
1247 1275 6.766467 GGAATGTAAAGGATAACGTGGATTCT 59.234 38.462 0.00 0.00 0.00 2.40
1248 1276 6.540914 TGGAATGTAAAGGATAACGTGGATTC 59.459 38.462 0.00 0.00 0.00 2.52
1249 1277 6.419791 TGGAATGTAAAGGATAACGTGGATT 58.580 36.000 0.00 0.00 0.00 3.01
1250 1278 5.996644 TGGAATGTAAAGGATAACGTGGAT 58.003 37.500 0.00 0.00 0.00 3.41
1251 1279 5.046159 ACTGGAATGTAAAGGATAACGTGGA 60.046 40.000 0.00 0.00 0.00 4.02
1268 1296 4.982241 TCTTTGGACTTGAGACTGGAAT 57.018 40.909 0.00 0.00 0.00 3.01
1269 1297 4.347876 TGATCTTTGGACTTGAGACTGGAA 59.652 41.667 0.00 0.00 0.00 3.53
1274 1302 7.277539 CAGTAAGATGATCTTTGGACTTGAGAC 59.722 40.741 13.54 1.43 37.89 3.36
1277 1305 7.009179 ACAGTAAGATGATCTTTGGACTTGA 57.991 36.000 13.54 0.00 37.89 3.02
1281 1309 6.879400 AGGTACAGTAAGATGATCTTTGGAC 58.121 40.000 13.54 12.60 37.89 4.02
1297 1325 0.178941 AACACCGGGAGAGGTACAGT 60.179 55.000 6.32 0.00 43.89 3.55
1298 1326 0.531200 GAACACCGGGAGAGGTACAG 59.469 60.000 6.32 0.00 43.89 2.74
1301 1329 1.679977 CGGAACACCGGGAGAGGTA 60.680 63.158 6.32 0.00 43.89 3.08
1311 1339 0.672711 GTACTGGCTTCCGGAACACC 60.673 60.000 14.35 18.03 33.36 4.16
1320 1348 1.740025 GGCATGTTCTGTACTGGCTTC 59.260 52.381 0.00 0.00 32.01 3.86
1324 1352 2.768253 TCAGGCATGTTCTGTACTGG 57.232 50.000 14.69 0.00 34.64 4.00
1327 1355 3.686726 CCTTCTTCAGGCATGTTCTGTAC 59.313 47.826 14.69 0.00 35.13 2.90
1329 1357 2.553904 CCCTTCTTCAGGCATGTTCTGT 60.554 50.000 14.69 0.00 42.29 3.41
1332 1360 1.004745 TCCCCTTCTTCAGGCATGTTC 59.995 52.381 0.00 0.00 42.29 3.18
1337 1365 2.176798 TCTTTTTCCCCTTCTTCAGGCA 59.823 45.455 0.00 0.00 42.29 4.75
1347 1375 4.416516 CCTTGTGGTATTCTTTTTCCCCT 58.583 43.478 0.00 0.00 0.00 4.79
1349 1377 3.513912 CCCCTTGTGGTATTCTTTTTCCC 59.486 47.826 0.00 0.00 0.00 3.97
1370 1398 2.648059 CTTCAGAATCACACCATCCCC 58.352 52.381 0.00 0.00 0.00 4.81
1371 1399 2.019984 GCTTCAGAATCACACCATCCC 58.980 52.381 0.00 0.00 0.00 3.85
1378 1406 3.071457 TCCTTCAGTGCTTCAGAATCACA 59.929 43.478 17.39 0.00 33.44 3.58
1379 1407 3.668447 TCCTTCAGTGCTTCAGAATCAC 58.332 45.455 8.82 8.82 0.00 3.06
1383 1411 2.158769 TGCTTCCTTCAGTGCTTCAGAA 60.159 45.455 0.00 0.00 0.00 3.02
1392 1420 0.605589 CTCGGAGTGCTTCCTTCAGT 59.394 55.000 0.00 0.00 44.41 3.41
1393 1421 0.605589 ACTCGGAGTGCTTCCTTCAG 59.394 55.000 10.41 2.86 44.41 3.02
1397 1425 1.178276 CAGTACTCGGAGTGCTTCCT 58.822 55.000 23.60 7.86 39.17 3.36
1405 1433 2.743636 TTGAAAGGCAGTACTCGGAG 57.256 50.000 2.83 2.83 0.00 4.63
1445 1473 1.358152 ATCCCCCGAGAGTTTGTTGA 58.642 50.000 0.00 0.00 0.00 3.18
1455 1483 0.748005 AATCGCACAAATCCCCCGAG 60.748 55.000 0.00 0.00 0.00 4.63
1458 1486 1.141665 GCAATCGCACAAATCCCCC 59.858 57.895 0.00 0.00 38.36 5.40
1471 1499 5.565592 TGGTACAATGTCTCAATGCAATC 57.434 39.130 0.00 0.00 31.92 2.67
1491 1519 6.954487 TCTGAATTTCTTGGATGATCATGG 57.046 37.500 14.30 0.79 0.00 3.66
1492 1520 8.248253 TGTTTCTGAATTTCTTGGATGATCATG 58.752 33.333 14.30 0.00 0.00 3.07
1519 1547 2.480419 GCATACACTGAAAACTGCGTCT 59.520 45.455 0.00 0.00 0.00 4.18
1523 1551 5.409826 ACTTCTAGCATACACTGAAAACTGC 59.590 40.000 0.00 0.00 0.00 4.40
1524 1552 6.128445 CCACTTCTAGCATACACTGAAAACTG 60.128 42.308 0.00 0.00 0.00 3.16
1542 1570 6.966534 ATTTTGATCAACTCAACCACTTCT 57.033 33.333 7.89 0.00 43.54 2.85
1549 1577 6.364435 GCAGGAAGAATTTTGATCAACTCAAC 59.636 38.462 7.89 0.00 43.54 3.18
1554 1582 8.816640 TTAAAGCAGGAAGAATTTTGATCAAC 57.183 30.769 7.89 0.00 0.00 3.18
1569 1597 6.206634 CCTTGTCACAGTTTATTAAAGCAGGA 59.793 38.462 0.00 0.00 0.00 3.86
1571 1599 7.202016 TCCTTGTCACAGTTTATTAAAGCAG 57.798 36.000 0.00 0.00 0.00 4.24
1600 1628 8.489676 AGAAGTTCATCAGACCATATATCACT 57.510 34.615 5.50 0.00 0.00 3.41
1601 1629 8.986847 CAAGAAGTTCATCAGACCATATATCAC 58.013 37.037 5.50 0.00 0.00 3.06
1614 1642 8.588472 TGTATCTTTCTCTCAAGAAGTTCATCA 58.412 33.333 5.50 0.00 42.36 3.07
1630 1658 5.491982 GTCACCACCATCTTGTATCTTTCT 58.508 41.667 0.00 0.00 0.00 2.52
1632 1660 4.567747 GGGTCACCACCATCTTGTATCTTT 60.568 45.833 0.00 0.00 45.94 2.52
1636 1664 2.562296 AGGGTCACCACCATCTTGTAT 58.438 47.619 0.00 0.00 45.94 2.29
1639 1667 1.909302 AGTAGGGTCACCACCATCTTG 59.091 52.381 0.00 0.00 45.94 3.02
1644 1672 1.142060 CACAAAGTAGGGTCACCACCA 59.858 52.381 0.00 0.00 45.94 4.17
1646 1674 1.892209 CCACAAAGTAGGGTCACCAC 58.108 55.000 0.00 0.00 40.13 4.16
1647 1675 0.109723 GCCACAAAGTAGGGTCACCA 59.890 55.000 0.00 0.00 40.13 4.17
1648 1676 0.953960 CGCCACAAAGTAGGGTCACC 60.954 60.000 0.00 0.00 0.00 4.02
1651 1679 0.034337 TCACGCCACAAAGTAGGGTC 59.966 55.000 0.00 0.00 0.00 4.46
1658 1686 1.294659 GAGCTCCTCACGCCACAAAG 61.295 60.000 0.87 0.00 0.00 2.77
1661 1689 2.917227 TGAGCTCCTCACGCCACA 60.917 61.111 12.15 0.00 35.39 4.17
1677 1705 2.741553 TGTGTTAGTCTGCACACAGGTG 60.742 50.000 13.30 0.00 46.58 4.00
1688 1716 9.672673 ACTTAGATTTATTGCATGTGTTAGTCT 57.327 29.630 0.00 0.00 0.00 3.24
1710 1738 2.026262 GGATCTGGCCAACCTGAACTTA 60.026 50.000 7.01 0.00 45.87 2.24
1718 1746 1.379044 CACAGGGATCTGGCCAACC 60.379 63.158 7.01 10.85 44.99 3.77
1720 1748 1.379916 CACACAGGGATCTGGCCAA 59.620 57.895 7.01 0.00 44.99 4.52
1747 1775 9.482627 GTCCAGGTTATCAACAAGATATCTTAG 57.517 37.037 17.53 13.77 38.93 2.18
1759 1787 3.713826 TGGAAGGTCCAGGTTATCAAC 57.286 47.619 0.00 0.00 42.67 3.18
1773 1801 8.087750 TCTTTTATGCTGTAACAATTTGGAAGG 58.912 33.333 0.78 0.00 0.00 3.46
1793 1821 9.691362 GCAACAGGTAGAATTGAATTTCTTTTA 57.309 29.630 0.00 0.00 37.20 1.52
1794 1822 8.203485 TGCAACAGGTAGAATTGAATTTCTTTT 58.797 29.630 0.00 0.00 37.20 2.27
1796 1824 7.288810 TGCAACAGGTAGAATTGAATTTCTT 57.711 32.000 0.00 0.00 37.20 2.52
1797 1825 6.899393 TGCAACAGGTAGAATTGAATTTCT 57.101 33.333 0.00 0.00 39.28 2.52
1812 1840 3.054878 GCATTTCACTCTTTGCAACAGG 58.945 45.455 0.00 0.00 35.22 4.00
1816 1844 5.010314 AGAGAATGCATTTCACTCTTTGCAA 59.990 36.000 18.65 0.00 46.97 4.08
1821 1849 6.233434 TGTACAGAGAATGCATTTCACTCTT 58.767 36.000 20.77 15.73 33.58 2.85
1826 1854 6.072508 GGAAACTGTACAGAGAATGCATTTCA 60.073 38.462 29.30 4.37 36.75 2.69
1857 1885 2.825532 GGGCACATTGTACAACCTGAAT 59.174 45.455 11.22 0.00 0.00 2.57
1901 1929 3.327757 AGACTTCTTGACCAACCAGCATA 59.672 43.478 0.00 0.00 0.00 3.14
1906 1934 3.924114 TTCAGACTTCTTGACCAACCA 57.076 42.857 0.00 0.00 0.00 3.67
1907 1935 4.640647 ACTTTTCAGACTTCTTGACCAACC 59.359 41.667 0.00 0.00 0.00 3.77
1908 1936 5.819825 ACTTTTCAGACTTCTTGACCAAC 57.180 39.130 0.00 0.00 0.00 3.77
1921 1952 5.065218 GCAAGTCAAGAGTCAACTTTTCAGA 59.935 40.000 0.00 0.00 31.04 3.27
1934 1965 3.320626 TCGACAATCAGCAAGTCAAGAG 58.679 45.455 0.00 0.00 32.68 2.85
1983 2017 3.306294 GCAGCTGCAAAGGAATTAAGGTT 60.306 43.478 33.36 0.00 41.59 3.50
1995 2029 0.899253 TTATGCCTGGCAGCTGCAAA 60.899 50.000 37.63 24.65 43.65 3.68
2015 2049 1.401905 CTCCGATAAAAACAGCCTGCC 59.598 52.381 0.00 0.00 0.00 4.85
2082 2116 7.934855 AATGAAAGCAGAGAATAGTCAACAT 57.065 32.000 0.00 0.00 0.00 2.71
2179 2213 1.946768 CTCTCAAAAACACTTCGCCCA 59.053 47.619 0.00 0.00 0.00 5.36
2338 2372 6.925718 AGATTTTGCTTGCTAAAAACCTCTTC 59.074 34.615 6.35 0.00 31.54 2.87
2424 2458 4.686191 TCAATTGTGTTTTTCCAGCCAT 57.314 36.364 5.13 0.00 0.00 4.40
2426 2460 3.248363 GCTTCAATTGTGTTTTTCCAGCC 59.752 43.478 5.13 0.00 0.00 4.85
2429 2463 3.870419 GCAGCTTCAATTGTGTTTTTCCA 59.130 39.130 5.13 0.00 0.00 3.53
2430 2464 4.025480 CAGCAGCTTCAATTGTGTTTTTCC 60.025 41.667 5.13 0.00 0.00 3.13
2462 2496 2.906389 TGAACAACCTCTGCACTATCCT 59.094 45.455 0.00 0.00 0.00 3.24
2529 2571 9.965902 ACCTCATATATTTATCAATGGAGGTTC 57.034 33.333 8.91 0.00 34.91 3.62
2550 2594 3.574396 TGACAAACCAAAACACAACCTCA 59.426 39.130 0.00 0.00 0.00 3.86
2552 2596 3.322254 TGTGACAAACCAAAACACAACCT 59.678 39.130 0.00 0.00 38.28 3.50
2568 2612 4.186856 TCATGACTTTCGCTATGTGACA 57.813 40.909 0.00 0.00 0.00 3.58
2576 2620 3.141398 TCTTGCTTTCATGACTTTCGCT 58.859 40.909 0.00 0.00 0.00 4.93
2578 2622 4.997905 TCTCTTGCTTTCATGACTTTCG 57.002 40.909 0.00 0.00 0.00 3.46
2602 2650 5.476945 GGTAACACTGTCATTTCCCTCAAAT 59.523 40.000 0.00 0.00 34.79 2.32
2603 2651 4.825085 GGTAACACTGTCATTTCCCTCAAA 59.175 41.667 0.00 0.00 0.00 2.69
2618 2666 5.592688 GCACATTAATACCATGGGTAACACT 59.407 40.000 18.09 0.00 41.85 3.55
2619 2667 5.592688 AGCACATTAATACCATGGGTAACAC 59.407 40.000 18.09 2.91 41.85 3.32
2622 2670 4.582656 GCAGCACATTAATACCATGGGTAA 59.417 41.667 18.09 11.59 41.85 2.85
2625 2673 2.030893 CGCAGCACATTAATACCATGGG 60.031 50.000 18.09 0.00 0.00 4.00
2704 2754 8.510505 ACATTTTCTCTCTTTAGCTCACATTTC 58.489 33.333 0.00 0.00 0.00 2.17
2706 2756 7.992754 ACATTTTCTCTCTTTAGCTCACATT 57.007 32.000 0.00 0.00 0.00 2.71
2712 2762 7.224297 TGTACCAACATTTTCTCTCTTTAGCT 58.776 34.615 0.00 0.00 0.00 3.32
2726 2776 9.308000 TCCTCTCAAAAATATTGTACCAACATT 57.692 29.630 0.00 0.00 34.97 2.71
2727 2777 8.877864 TCCTCTCAAAAATATTGTACCAACAT 57.122 30.769 0.00 0.00 34.97 2.71
2729 2779 8.244113 CCTTCCTCTCAAAAATATTGTACCAAC 58.756 37.037 0.00 0.00 0.00 3.77
2730 2780 8.167392 TCCTTCCTCTCAAAAATATTGTACCAA 58.833 33.333 0.00 0.00 0.00 3.67
2731 2781 7.695055 TCCTTCCTCTCAAAAATATTGTACCA 58.305 34.615 0.00 0.00 0.00 3.25
2732 2782 8.047310 TCTCCTTCCTCTCAAAAATATTGTACC 58.953 37.037 0.00 0.00 0.00 3.34
2735 2833 8.940397 TTTCTCCTTCCTCTCAAAAATATTGT 57.060 30.769 0.00 0.00 0.00 2.71
2749 2847 8.718656 ACAGCATACTAATTATTTCTCCTTCCT 58.281 33.333 0.00 0.00 0.00 3.36
2761 2859 9.529325 GTACATCACAGAACAGCATACTAATTA 57.471 33.333 0.00 0.00 0.00 1.40
2784 2882 4.738740 GTGGCTCAGATTGTATGTACGTAC 59.261 45.833 18.90 18.90 0.00 3.67
2785 2883 4.643334 AGTGGCTCAGATTGTATGTACGTA 59.357 41.667 0.00 0.00 0.00 3.57
2786 2884 3.447586 AGTGGCTCAGATTGTATGTACGT 59.552 43.478 0.00 0.00 0.00 3.57
2787 2885 4.046938 AGTGGCTCAGATTGTATGTACG 57.953 45.455 0.00 0.00 0.00 3.67
2892 3005 0.821711 ATGGGGACACAACACCAACG 60.822 55.000 0.00 0.00 46.90 4.10
2930 3043 6.435591 GGATTTCCCAAGTTTCTCAGAGATTT 59.564 38.462 0.00 0.00 34.14 2.17
2940 3053 6.846325 CTATCGTAGGATTTCCCAAGTTTC 57.154 41.667 2.78 0.00 37.41 2.78
2967 3080 0.782384 CTTTCACCGAGAAACCGTCG 59.218 55.000 0.00 0.00 41.17 5.12
2979 3092 4.082571 CCATCCACAGATTTCACTTTCACC 60.083 45.833 0.00 0.00 0.00 4.02
3012 3125 6.550938 ATGATAATGATATCTTCCTCCGCA 57.449 37.500 3.98 0.00 38.99 5.69
3091 3204 1.021390 GTGAGAGCCACATTGGTCCG 61.021 60.000 0.00 0.00 45.03 4.79
3134 3247 1.967066 CAGATACCCTGGAATCGAGCT 59.033 52.381 0.00 0.00 39.23 4.09
3205 3343 9.978044 ACCGTATTATAGAAGAATTAACTGTCC 57.022 33.333 0.00 0.00 0.00 4.02
3291 3461 9.563748 AAACTATGTAGCTTTAAACCAACAGTA 57.436 29.630 0.00 0.00 0.00 2.74
3468 3640 3.988379 TCGGCATCAAAATAGCAATCC 57.012 42.857 0.00 0.00 0.00 3.01
3502 3674 4.523943 AGCCTTGAATACTGCATTTGACAA 59.476 37.500 0.00 0.00 0.00 3.18
3517 3689 0.610174 AGCTCGATGACAGCCTTGAA 59.390 50.000 0.00 0.00 37.63 2.69
3561 3733 5.239525 GCCTATATCAAGCGAGTCCATTTTT 59.760 40.000 0.00 0.00 0.00 1.94
3576 3748 3.048600 AGACCTTGGCTTGCCTATATCA 58.951 45.455 13.18 0.00 0.00 2.15
3577 3749 3.071602 TGAGACCTTGGCTTGCCTATATC 59.928 47.826 13.18 6.02 0.00 1.63
3583 3755 1.676967 CCTGAGACCTTGGCTTGCC 60.677 63.158 4.43 4.43 0.00 4.52
3596 3768 5.946377 AGAAAGGCTTTTGGTTATACCTGAG 59.054 40.000 14.66 0.00 39.58 3.35
3605 3777 5.991606 GCTATTTTCAGAAAGGCTTTTGGTT 59.008 36.000 14.66 0.00 0.00 3.67
3616 3788 7.224753 GTCCGTATGATGAGCTATTTTCAGAAA 59.775 37.037 0.00 0.00 0.00 2.52
3627 3799 2.695147 TGACATGTCCGTATGATGAGCT 59.305 45.455 22.85 0.00 0.00 4.09
3651 3823 3.068560 ACCGTATTTGTCAGCGCTTTTA 58.931 40.909 7.50 0.00 0.00 1.52
3652 3824 1.877443 ACCGTATTTGTCAGCGCTTTT 59.123 42.857 7.50 0.00 0.00 2.27
3701 3873 8.416329 GGACCTTGATTTCTGCATATAAAACAT 58.584 33.333 0.00 0.00 0.00 2.71
3769 3942 2.416701 CCAGGTGACACAAACAACAACC 60.417 50.000 8.08 0.00 0.00 3.77
3908 4096 4.959210 TCAGTCTTAGGCTCTTAGCAGAAT 59.041 41.667 0.00 0.00 44.75 2.40
3910 4098 3.969553 TCAGTCTTAGGCTCTTAGCAGA 58.030 45.455 0.00 0.00 44.75 4.26
3912 4100 5.696030 TCTATCAGTCTTAGGCTCTTAGCA 58.304 41.667 0.00 0.00 44.75 3.49
3914 4102 7.817418 AGTTCTATCAGTCTTAGGCTCTTAG 57.183 40.000 0.00 0.00 0.00 2.18
3916 4104 7.489239 AAAGTTCTATCAGTCTTAGGCTCTT 57.511 36.000 0.00 0.00 0.00 2.85
3917 4105 7.489239 AAAAGTTCTATCAGTCTTAGGCTCT 57.511 36.000 0.00 0.00 0.00 4.09
3918 4106 9.471084 GATAAAAGTTCTATCAGTCTTAGGCTC 57.529 37.037 0.00 0.00 0.00 4.70
3920 4108 8.425703 AGGATAAAAGTTCTATCAGTCTTAGGC 58.574 37.037 0.00 0.00 0.00 3.93
3921 4109 9.757227 CAGGATAAAAGTTCTATCAGTCTTAGG 57.243 37.037 0.00 0.00 0.00 2.69
3924 4112 8.261522 GTCCAGGATAAAAGTTCTATCAGTCTT 58.738 37.037 0.00 0.00 0.00 3.01
3925 4113 7.400339 TGTCCAGGATAAAAGTTCTATCAGTCT 59.600 37.037 0.00 0.00 0.00 3.24
3926 4114 7.556844 TGTCCAGGATAAAAGTTCTATCAGTC 58.443 38.462 0.00 0.00 0.00 3.51
3928 4116 8.260818 TCTTGTCCAGGATAAAAGTTCTATCAG 58.739 37.037 0.00 0.00 0.00 2.90
3930 4118 7.222999 CGTCTTGTCCAGGATAAAAGTTCTATC 59.777 40.741 0.00 0.00 0.00 2.08
3933 4132 5.221661 ACGTCTTGTCCAGGATAAAAGTTCT 60.222 40.000 0.00 0.00 0.00 3.01
3944 4143 5.467399 TGTAATTAACAACGTCTTGTCCAGG 59.533 40.000 0.00 0.00 39.88 4.45
3953 4152 8.023128 TCCTACAGTACTGTAATTAACAACGTC 58.977 37.037 30.31 0.00 44.47 4.34
3966 4165 5.201243 TGCATGATACTCCTACAGTACTGT 58.799 41.667 30.13 30.13 46.87 3.55
3967 4166 5.767269 CTGCATGATACTCCTACAGTACTG 58.233 45.833 21.44 21.44 40.60 2.74
3968 4167 4.279671 GCTGCATGATACTCCTACAGTACT 59.720 45.833 0.00 0.00 40.60 2.73
3969 4168 4.279671 AGCTGCATGATACTCCTACAGTAC 59.720 45.833 1.02 0.00 40.60 2.73
3970 4169 4.279420 CAGCTGCATGATACTCCTACAGTA 59.721 45.833 0.00 0.00 42.09 2.74
3971 4170 3.069300 CAGCTGCATGATACTCCTACAGT 59.931 47.826 0.00 0.00 39.41 3.55
3972 4171 3.554544 CCAGCTGCATGATACTCCTACAG 60.555 52.174 8.66 0.00 0.00 2.74
3973 4172 2.366590 CCAGCTGCATGATACTCCTACA 59.633 50.000 8.66 0.00 0.00 2.74
3974 4173 2.630098 TCCAGCTGCATGATACTCCTAC 59.370 50.000 8.66 0.00 0.00 3.18
3975 4174 2.962859 TCCAGCTGCATGATACTCCTA 58.037 47.619 8.66 0.00 0.00 2.94
3976 4175 1.798626 TCCAGCTGCATGATACTCCT 58.201 50.000 8.66 0.00 0.00 3.69
3977 4176 2.627515 TTCCAGCTGCATGATACTCC 57.372 50.000 8.66 0.00 0.00 3.85
3978 4177 3.250280 CACATTCCAGCTGCATGATACTC 59.750 47.826 23.86 0.00 0.00 2.59
3979 4178 3.211865 CACATTCCAGCTGCATGATACT 58.788 45.455 23.86 5.49 0.00 2.12
3980 4179 2.292569 CCACATTCCAGCTGCATGATAC 59.707 50.000 23.86 0.00 0.00 2.24
3981 4180 2.578786 CCACATTCCAGCTGCATGATA 58.421 47.619 23.86 4.26 0.00 2.15
3982 4181 1.399714 CCACATTCCAGCTGCATGAT 58.600 50.000 23.86 10.49 0.00 2.45
3983 4182 1.317431 GCCACATTCCAGCTGCATGA 61.317 55.000 23.86 8.76 0.00 3.07
4017 4219 5.120830 GCAGTTCAAAAGCGAGAAAGAGATA 59.879 40.000 0.00 0.00 0.00 1.98
4018 4220 4.083590 GCAGTTCAAAAGCGAGAAAGAGAT 60.084 41.667 0.00 0.00 0.00 2.75
4019 4221 3.248602 GCAGTTCAAAAGCGAGAAAGAGA 59.751 43.478 0.00 0.00 0.00 3.10
4024 4226 0.586319 CGGCAGTTCAAAAGCGAGAA 59.414 50.000 0.00 0.00 0.00 2.87
4029 4231 2.119457 CTGTTTCGGCAGTTCAAAAGC 58.881 47.619 0.00 0.00 0.00 3.51
4062 4264 9.383519 GATGAATAAAGTCTGAACCACTGAATA 57.616 33.333 0.00 0.00 0.00 1.75
4069 4271 6.295249 TGTGTGATGAATAAAGTCTGAACCA 58.705 36.000 0.00 0.00 0.00 3.67
4070 4272 6.801539 TGTGTGATGAATAAAGTCTGAACC 57.198 37.500 0.00 0.00 0.00 3.62
4071 4273 7.959651 GTCATGTGTGATGAATAAAGTCTGAAC 59.040 37.037 0.00 0.00 36.60 3.18
4072 4274 7.661027 TGTCATGTGTGATGAATAAAGTCTGAA 59.339 33.333 0.00 0.00 36.60 3.02
4073 4275 7.118245 GTGTCATGTGTGATGAATAAAGTCTGA 59.882 37.037 0.00 0.00 36.60 3.27
4074 4276 7.239271 GTGTCATGTGTGATGAATAAAGTCTG 58.761 38.462 0.00 0.00 36.60 3.51
4075 4277 6.091305 CGTGTCATGTGTGATGAATAAAGTCT 59.909 38.462 0.00 0.00 36.60 3.24
4076 4278 6.128553 ACGTGTCATGTGTGATGAATAAAGTC 60.129 38.462 0.00 0.00 36.60 3.01
4077 4279 5.700832 ACGTGTCATGTGTGATGAATAAAGT 59.299 36.000 0.00 0.00 36.60 2.66
4078 4280 6.017325 CACGTGTCATGTGTGATGAATAAAG 58.983 40.000 15.83 0.00 36.60 1.85
4094 4303 5.211454 CAAAATAATGAAGTGCACGTGTCA 58.789 37.500 18.38 15.94 0.00 3.58
4490 4699 2.238942 TAGCACTGTTATCATGGCCG 57.761 50.000 0.00 0.00 0.00 6.13
4501 4710 3.622455 GCCATTTCTACCCTTAGCACTGT 60.622 47.826 0.00 0.00 0.00 3.55
4525 4734 6.537660 CGATACGAAAAGAAGGGAAAAGGTAT 59.462 38.462 0.00 0.00 0.00 2.73
4566 4775 5.702209 TCACCTATAAAACCAAGAACCGAAC 59.298 40.000 0.00 0.00 0.00 3.95
4575 4786 6.239458 CCTTTTGGCTTCACCTATAAAACCAA 60.239 38.462 0.00 0.00 40.22 3.67
4576 4787 5.245075 CCTTTTGGCTTCACCTATAAAACCA 59.755 40.000 0.00 0.00 40.22 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.