Multiple sequence alignment - TraesCS2A01G394000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G394000 chr2A 100.000 5083 0 0 1 5083 644071628 644076710 0.000000e+00 9387.0
1 TraesCS2A01G394000 chr2A 83.778 487 71 5 3 484 191634236 191634719 6.000000e-124 455.0
2 TraesCS2A01G394000 chr2A 98.469 196 3 0 4271 4466 661576707 661576512 3.770000e-91 346.0
3 TraesCS2A01G394000 chr2A 96.098 205 8 0 4269 4473 47564507 47564303 8.150000e-88 335.0
4 TraesCS2A01G394000 chr2A 93.151 219 13 1 4255 4473 578100076 578100292 2.280000e-83 320.0
5 TraesCS2A01G394000 chr2D 92.136 2416 136 31 1839 4233 499105359 499107741 0.000000e+00 3360.0
6 TraesCS2A01G394000 chr2D 90.578 1263 56 26 542 1759 499104078 499105322 0.000000e+00 1615.0
7 TraesCS2A01G394000 chr2D 85.930 199 23 3 4883 5079 499108736 499108931 1.850000e-49 207.0
8 TraesCS2A01G394000 chr2D 79.530 298 37 13 4568 4842 499108442 499108738 1.870000e-44 191.0
9 TraesCS2A01G394000 chr2B 92.760 2196 115 21 1839 4010 586768906 586771081 0.000000e+00 3134.0
10 TraesCS2A01G394000 chr2B 89.161 1264 68 25 542 1759 586767629 586768869 0.000000e+00 1511.0
11 TraesCS2A01G394000 chr2B 91.399 779 58 3 3464 4233 586907717 586908495 0.000000e+00 1059.0
12 TraesCS2A01G394000 chr2B 92.638 326 24 0 3081 3406 586907307 586907632 2.140000e-128 470.0
13 TraesCS2A01G394000 chr2B 85.033 461 61 7 6 461 645492883 645492426 3.590000e-126 462.0
14 TraesCS2A01G394000 chr2B 82.298 531 70 11 4570 5081 586909639 586910164 6.040000e-119 438.0
15 TraesCS2A01G394000 chr2B 93.464 153 9 1 725 877 586904904 586905055 5.120000e-55 226.0
16 TraesCS2A01G394000 chr2B 97.368 38 1 0 4469 4506 586909554 586909591 1.180000e-06 65.8
17 TraesCS2A01G394000 chr6A 95.385 520 18 5 3 517 216007570 216007052 0.000000e+00 822.0
18 TraesCS2A01G394000 chr3A 93.846 520 27 3 3 517 472419706 472419187 0.000000e+00 778.0
19 TraesCS2A01G394000 chr3A 96.500 200 7 0 4270 4469 596278384 596278185 1.050000e-86 331.0
20 TraesCS2A01G394000 chr3A 94.787 211 10 1 4265 4475 537148165 537148374 1.360000e-85 327.0
21 TraesCS2A01G394000 chr7D 78.913 1086 183 31 3077 4144 636697670 636698727 0.000000e+00 695.0
22 TraesCS2A01G394000 chr1B 90.577 520 43 4 3 517 683325313 683325831 0.000000e+00 684.0
23 TraesCS2A01G394000 chr1B 89.484 523 48 4 1 517 567236067 567236588 0.000000e+00 654.0
24 TraesCS2A01G394000 chr1B 88.975 517 52 3 3 514 26656247 26655731 7.180000e-178 634.0
25 TraesCS2A01G394000 chr7B 79.472 984 161 33 2785 3740 739477335 739478305 0.000000e+00 660.0
26 TraesCS2A01G394000 chr7B 80.216 647 110 16 2787 3419 739540689 739540047 2.140000e-128 470.0
27 TraesCS2A01G394000 chrUn 84.069 521 73 8 6 517 31730526 31730007 1.270000e-135 494.0
28 TraesCS2A01G394000 chrUn 84.069 521 73 8 6 517 278207513 278206994 1.270000e-135 494.0
29 TraesCS2A01G394000 chr4A 96.535 202 7 0 4270 4471 588185871 588185670 8.150000e-88 335.0
30 TraesCS2A01G394000 chr6B 95.215 209 10 0 4270 4478 205275985 205275777 1.050000e-86 331.0
31 TraesCS2A01G394000 chr6B 95.146 206 10 0 4270 4475 447685134 447685339 4.910000e-85 326.0
32 TraesCS2A01G394000 chr6D 95.610 205 9 0 4269 4473 425435605 425435401 3.790000e-86 329.0
33 TraesCS2A01G394000 chr7A 82.288 271 40 4 2111 2374 729567845 729568114 1.420000e-55 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G394000 chr2A 644071628 644076710 5082 False 9387.00 9387 100.0000 1 5083 1 chr2A.!!$F3 5082
1 TraesCS2A01G394000 chr2D 499104078 499108931 4853 False 1343.25 3360 87.0435 542 5079 4 chr2D.!!$F1 4537
2 TraesCS2A01G394000 chr2B 586767629 586771081 3452 False 2322.50 3134 90.9605 542 4010 2 chr2B.!!$F1 3468
3 TraesCS2A01G394000 chr2B 586904904 586910164 5260 False 451.76 1059 91.4334 725 5081 5 chr2B.!!$F2 4356
4 TraesCS2A01G394000 chr6A 216007052 216007570 518 True 822.00 822 95.3850 3 517 1 chr6A.!!$R1 514
5 TraesCS2A01G394000 chr3A 472419187 472419706 519 True 778.00 778 93.8460 3 517 1 chr3A.!!$R1 514
6 TraesCS2A01G394000 chr7D 636697670 636698727 1057 False 695.00 695 78.9130 3077 4144 1 chr7D.!!$F1 1067
7 TraesCS2A01G394000 chr1B 683325313 683325831 518 False 684.00 684 90.5770 3 517 1 chr1B.!!$F2 514
8 TraesCS2A01G394000 chr1B 567236067 567236588 521 False 654.00 654 89.4840 1 517 1 chr1B.!!$F1 516
9 TraesCS2A01G394000 chr1B 26655731 26656247 516 True 634.00 634 88.9750 3 514 1 chr1B.!!$R1 511
10 TraesCS2A01G394000 chr7B 739477335 739478305 970 False 660.00 660 79.4720 2785 3740 1 chr7B.!!$F1 955
11 TraesCS2A01G394000 chr7B 739540047 739540689 642 True 470.00 470 80.2160 2787 3419 1 chr7B.!!$R1 632
12 TraesCS2A01G394000 chrUn 31730007 31730526 519 True 494.00 494 84.0690 6 517 1 chrUn.!!$R1 511
13 TraesCS2A01G394000 chrUn 278206994 278207513 519 True 494.00 494 84.0690 6 517 1 chrUn.!!$R2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 1049 0.379669 GCTGAAGGCCACATCGATTG 59.620 55.0 5.01 0.0 34.27 2.67 F
1687 1798 0.320421 GGTGCCTCAACTACGAAGCA 60.320 55.0 0.00 0.0 29.93 3.91 F
2922 3084 0.111253 AATGCGAATCCCTCATCCCC 59.889 55.0 0.00 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2517 2672 0.029567 CGATGTCTCTAGGGACGTGC 59.970 60.0 22.37 12.17 38.91 5.34 R
3592 3868 0.038526 ACGGAGTTGACGCGAAGAAT 60.039 50.0 15.93 0.00 37.78 2.40 R
4534 5855 0.107654 GAACTAACCGAGCATGGCCT 60.108 55.0 3.32 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
234 235 4.069232 CCAAGCTCCTCCGCACGA 62.069 66.667 0.00 0.00 0.00 4.35
238 239 4.863925 GCTCCTCCGCACGAGCTC 62.864 72.222 2.73 2.73 46.48 4.09
239 240 3.443925 CTCCTCCGCACGAGCTCA 61.444 66.667 15.40 0.00 37.27 4.26
241 242 2.811317 CCTCCGCACGAGCTCAAC 60.811 66.667 15.40 0.74 37.27 3.18
242 243 2.259818 CTCCGCACGAGCTCAACT 59.740 61.111 15.40 0.00 39.10 3.16
243 244 1.803519 CTCCGCACGAGCTCAACTC 60.804 63.158 15.40 0.00 42.47 3.01
325 334 3.376914 CTCATCGTCGTCGCCGTCA 62.377 63.158 0.00 0.00 36.96 4.35
354 363 1.920325 CCTCCAGAGCCCAGAACCA 60.920 63.158 0.00 0.00 0.00 3.67
517 526 3.986006 TCGCCAGACCGAAACGCT 61.986 61.111 0.00 0.00 33.77 5.07
518 527 2.126228 CGCCAGACCGAAACGCTA 60.126 61.111 0.00 0.00 0.00 4.26
519 528 1.735198 CGCCAGACCGAAACGCTAA 60.735 57.895 0.00 0.00 0.00 3.09
520 529 1.785951 GCCAGACCGAAACGCTAAC 59.214 57.895 0.00 0.00 0.00 2.34
521 530 0.947180 GCCAGACCGAAACGCTAACA 60.947 55.000 0.00 0.00 0.00 2.41
522 531 1.722011 CCAGACCGAAACGCTAACAT 58.278 50.000 0.00 0.00 0.00 2.71
523 532 1.659098 CCAGACCGAAACGCTAACATC 59.341 52.381 0.00 0.00 0.00 3.06
524 533 1.659098 CAGACCGAAACGCTAACATCC 59.341 52.381 0.00 0.00 0.00 3.51
525 534 1.549170 AGACCGAAACGCTAACATCCT 59.451 47.619 0.00 0.00 0.00 3.24
526 535 1.659098 GACCGAAACGCTAACATCCTG 59.341 52.381 0.00 0.00 0.00 3.86
527 536 1.006832 CCGAAACGCTAACATCCTGG 58.993 55.000 0.00 0.00 0.00 4.45
528 537 1.404986 CCGAAACGCTAACATCCTGGA 60.405 52.381 0.00 0.00 0.00 3.86
529 538 2.550978 CGAAACGCTAACATCCTGGAT 58.449 47.619 2.57 2.57 0.00 3.41
530 539 2.936498 CGAAACGCTAACATCCTGGATT 59.064 45.455 6.42 0.00 0.00 3.01
531 540 3.001330 CGAAACGCTAACATCCTGGATTC 59.999 47.826 6.42 0.00 0.00 2.52
532 541 3.914426 AACGCTAACATCCTGGATTCT 57.086 42.857 6.42 0.00 0.00 2.40
533 542 3.460857 ACGCTAACATCCTGGATTCTC 57.539 47.619 6.42 0.00 0.00 2.87
534 543 3.034635 ACGCTAACATCCTGGATTCTCT 58.965 45.455 6.42 0.00 0.00 3.10
535 544 3.068873 ACGCTAACATCCTGGATTCTCTC 59.931 47.826 6.42 0.00 0.00 3.20
536 545 3.648009 GCTAACATCCTGGATTCTCTCG 58.352 50.000 6.42 0.00 0.00 4.04
537 546 3.068873 GCTAACATCCTGGATTCTCTCGT 59.931 47.826 6.42 0.00 0.00 4.18
538 547 3.810310 AACATCCTGGATTCTCTCGTC 57.190 47.619 6.42 0.00 0.00 4.20
539 548 2.035632 ACATCCTGGATTCTCTCGTCC 58.964 52.381 6.42 0.00 35.02 4.79
540 549 1.342819 CATCCTGGATTCTCTCGTCCC 59.657 57.143 6.42 0.00 33.45 4.46
619 629 3.511540 GGTTAACCGGTAGAGTTAGTGGT 59.488 47.826 8.00 0.00 31.66 4.16
620 630 4.488879 GTTAACCGGTAGAGTTAGTGGTG 58.511 47.826 8.00 0.00 31.66 4.17
667 677 4.639334 TGCTACTACTCCTACTACATCCG 58.361 47.826 0.00 0.00 0.00 4.18
710 723 2.096220 TGAAGTACGCTCTCTCTCGT 57.904 50.000 0.00 0.00 42.09 4.18
719 732 1.461778 CTCTCTCTCGTTCGCATTCG 58.538 55.000 0.00 0.00 0.00 3.34
720 733 1.062733 CTCTCTCTCGTTCGCATTCGA 59.937 52.381 0.00 0.00 43.89 3.71
721 734 1.671328 TCTCTCTCGTTCGCATTCGAT 59.329 47.619 0.00 0.00 45.04 3.59
722 735 2.040524 CTCTCTCGTTCGCATTCGATC 58.959 52.381 0.00 0.00 45.04 3.69
723 736 1.400494 TCTCTCGTTCGCATTCGATCA 59.600 47.619 0.00 0.00 45.04 2.92
854 867 4.988598 CAGAGGCACGCGGTTGGT 62.989 66.667 12.47 0.00 0.00 3.67
877 890 1.785768 TGCATGCACAGCAAACAATC 58.214 45.000 18.46 0.00 43.62 2.67
878 891 1.068741 TGCATGCACAGCAAACAATCA 59.931 42.857 18.46 0.00 43.62 2.57
881 894 3.927758 GCATGCACAGCAAACAATCAATA 59.072 39.130 14.21 0.00 43.62 1.90
884 897 5.956068 TGCACAGCAAACAATCAATACTA 57.044 34.783 0.00 0.00 34.76 1.82
885 898 5.698832 TGCACAGCAAACAATCAATACTAC 58.301 37.500 0.00 0.00 34.76 2.73
886 899 5.473162 TGCACAGCAAACAATCAATACTACT 59.527 36.000 0.00 0.00 34.76 2.57
887 900 5.796935 GCACAGCAAACAATCAATACTACTG 59.203 40.000 0.00 0.00 0.00 2.74
888 901 6.568462 GCACAGCAAACAATCAATACTACTGT 60.568 38.462 0.00 0.00 35.16 3.55
890 903 8.171196 CACAGCAAACAATCAATACTACTGTAG 58.829 37.037 13.13 13.13 33.61 2.74
923 970 4.911053 GTCCATAGACTGTGAAGAGTACG 58.089 47.826 0.00 0.00 40.10 3.67
924 971 3.945921 TCCATAGACTGTGAAGAGTACGG 59.054 47.826 0.00 0.00 0.00 4.02
925 972 3.695060 CCATAGACTGTGAAGAGTACGGT 59.305 47.826 0.00 0.00 40.20 4.83
992 1047 4.547859 GCTGAAGGCCACATCGAT 57.452 55.556 5.01 0.00 34.27 3.59
994 1049 0.379669 GCTGAAGGCCACATCGATTG 59.620 55.000 5.01 0.00 34.27 2.67
995 1050 0.379669 CTGAAGGCCACATCGATTGC 59.620 55.000 5.01 0.00 0.00 3.56
996 1051 1.031571 TGAAGGCCACATCGATTGCC 61.032 55.000 18.31 18.31 44.35 4.52
1031 1086 1.671901 GGTGGAGCGAGGAAGAGGAG 61.672 65.000 0.00 0.00 0.00 3.69
1133 1188 5.645067 TCTTCAGAGACAAGGTATGCAATTG 59.355 40.000 0.00 0.00 0.00 2.32
1139 1194 3.876914 GACAAGGTATGCAATTGGATCGA 59.123 43.478 16.40 0.00 0.00 3.59
1150 1205 0.666274 TTGGATCGATCGCATACGCC 60.666 55.000 18.81 4.01 39.84 5.68
1164 1253 1.658994 TACGCCCGATCACCATTTTC 58.341 50.000 0.00 0.00 0.00 2.29
1173 1262 1.631405 TCACCATTTTCCCAGCTTGG 58.369 50.000 0.00 0.00 37.25 3.61
1359 1449 2.703798 CGCAACCCAATGGCTCCAG 61.704 63.158 0.00 0.00 33.59 3.86
1396 1486 1.295423 GCTGGTTAGCCTCGTTCCA 59.705 57.895 0.00 0.00 44.33 3.53
1624 1735 1.997606 GATGTAACCTGCTACGCGTTT 59.002 47.619 20.78 7.00 0.00 3.60
1687 1798 0.320421 GGTGCCTCAACTACGAAGCA 60.320 55.000 0.00 0.00 29.93 3.91
1699 1810 2.202676 GAAGCAGCCGTCGAGAGG 60.203 66.667 0.00 2.63 0.00 3.69
1776 1887 8.175069 CAGTTCTGCTTCTGCGTAATTAATTAA 58.825 33.333 9.48 0.00 43.34 1.40
1782 1893 6.414987 GCTTCTGCGTAATTAATTAAGCTTGG 59.585 38.462 32.03 24.44 44.43 3.61
1783 1894 6.995511 TCTGCGTAATTAATTAAGCTTGGT 57.004 33.333 32.03 2.47 44.43 3.67
1786 1897 7.549842 TCTGCGTAATTAATTAAGCTTGGTGTA 59.450 33.333 32.03 17.74 44.43 2.90
1789 1900 8.126700 GCGTAATTAATTAAGCTTGGTGTACAT 58.873 33.333 28.14 0.00 42.07 2.29
1790 1901 9.646336 CGTAATTAATTAAGCTTGGTGTACATC 57.354 33.333 9.86 0.00 0.00 3.06
1796 1907 1.476891 AGCTTGGTGTACATCGATCGT 59.523 47.619 15.94 0.01 0.00 3.73
1803 1914 2.857748 GTGTACATCGATCGTTGCATGA 59.142 45.455 22.73 6.38 0.00 3.07
1806 1917 4.570369 TGTACATCGATCGTTGCATGAATT 59.430 37.500 22.73 7.15 0.00 2.17
1807 1918 3.943958 ACATCGATCGTTGCATGAATTG 58.056 40.909 22.73 6.49 0.00 2.32
1808 1919 3.242837 ACATCGATCGTTGCATGAATTGG 60.243 43.478 22.73 0.00 0.00 3.16
1809 1920 1.670295 TCGATCGTTGCATGAATTGGG 59.330 47.619 15.94 0.00 0.00 4.12
1811 1922 2.286595 CGATCGTTGCATGAATTGGGAG 60.287 50.000 7.03 0.00 0.00 4.30
1812 1923 2.198827 TCGTTGCATGAATTGGGAGT 57.801 45.000 0.00 0.00 0.00 3.85
1813 1924 2.513753 TCGTTGCATGAATTGGGAGTT 58.486 42.857 0.00 0.00 0.00 3.01
1814 1925 2.228582 TCGTTGCATGAATTGGGAGTTG 59.771 45.455 0.00 0.00 0.00 3.16
1822 1941 5.127682 GCATGAATTGGGAGTTGGTTTCTAT 59.872 40.000 0.00 0.00 0.00 1.98
1824 1943 5.016173 TGAATTGGGAGTTGGTTTCTATGG 58.984 41.667 0.00 0.00 0.00 2.74
1827 1946 4.028993 TGGGAGTTGGTTTCTATGGTTC 57.971 45.455 0.00 0.00 0.00 3.62
1833 1952 6.380079 AGTTGGTTTCTATGGTTCTCTCAT 57.620 37.500 0.00 0.00 0.00 2.90
1834 1953 6.176183 AGTTGGTTTCTATGGTTCTCTCATG 58.824 40.000 0.00 0.00 0.00 3.07
1836 1955 5.734720 TGGTTTCTATGGTTCTCTCATGTC 58.265 41.667 0.00 0.00 0.00 3.06
1881 2000 0.895100 GCACCATGCAGGGAACTTCA 60.895 55.000 26.87 0.00 44.26 3.02
1934 2080 1.063649 GCACGCTATCTCCGTTCGA 59.936 57.895 0.00 0.00 36.69 3.71
2298 2450 0.820871 AGATCTTCCTGGACACTCGC 59.179 55.000 0.00 0.00 0.00 5.03
2301 2453 1.444553 CTTCCTGGACACTCGCGTC 60.445 63.158 5.77 0.00 35.03 5.19
2395 2547 4.120589 GACAGATCCGATAACCCTGAAAC 58.879 47.826 0.00 0.00 0.00 2.78
2407 2559 2.979678 ACCCTGAAACACCAGTATCAGT 59.020 45.455 0.00 0.00 38.06 3.41
2517 2672 3.722957 CGTGCTTCAGAACAATCATGTCG 60.723 47.826 0.00 0.00 39.40 4.35
2549 2704 0.461961 GACATCGTCCTGGGGAAGAG 59.538 60.000 8.05 3.90 42.78 2.85
2874 3036 2.008329 GAGCAGAAGATGGACTTGCTG 58.992 52.381 1.59 0.00 41.14 4.41
2922 3084 0.111253 AATGCGAATCCCTCATCCCC 59.889 55.000 0.00 0.00 0.00 4.81
3043 3273 5.388061 CGTTCAAATTGAAATGCAGCTCTTG 60.388 40.000 10.27 0.00 38.22 3.02
3052 3282 7.213216 TGAAATGCAGCTCTTGTTATGTTTA 57.787 32.000 0.00 0.00 0.00 2.01
3054 3284 7.970061 TGAAATGCAGCTCTTGTTATGTTTATC 59.030 33.333 0.00 0.00 0.00 1.75
3056 3286 5.252547 TGCAGCTCTTGTTATGTTTATCCA 58.747 37.500 0.00 0.00 0.00 3.41
3141 3373 4.796038 TGAAAGACTAGGTTTACTCGGG 57.204 45.455 0.00 0.00 0.00 5.14
3146 3378 1.549170 ACTAGGTTTACTCGGGCACAG 59.451 52.381 0.00 0.00 0.00 3.66
3205 3437 0.389817 CATCAGCGTCTTCCCGAACA 60.390 55.000 0.00 0.00 0.00 3.18
3467 3735 4.783621 TCCCAGCTCATGCCGTGC 62.784 66.667 0.00 0.00 40.80 5.34
3640 3916 2.604686 AAGGCAGCGAGGAGGACA 60.605 61.111 0.00 0.00 0.00 4.02
3761 4045 3.458189 CCGAGACCTGGATGAAATGTAC 58.542 50.000 0.00 0.00 0.00 2.90
3763 4047 4.115516 CGAGACCTGGATGAAATGTACAG 58.884 47.826 0.00 0.00 0.00 2.74
3811 4104 4.804665 GGTATCTCTCGGTTTGCTTACTTC 59.195 45.833 0.00 0.00 0.00 3.01
3820 4113 3.181480 GGTTTGCTTACTTCTGGTTGCAA 60.181 43.478 0.00 0.00 41.01 4.08
3824 4117 2.229784 GCTTACTTCTGGTTGCAAGCAT 59.770 45.455 29.75 18.19 37.14 3.79
3902 4195 2.187946 CTGGTCCAGGATGCCGTC 59.812 66.667 11.46 0.00 31.97 4.79
4002 4295 2.664851 CTGAACGCGGTGGAGCAA 60.665 61.111 12.47 0.00 36.85 3.91
4023 4316 2.747446 ACTTCAACTTTTGACACGCAGT 59.253 40.909 0.00 0.00 39.87 4.40
4044 4337 1.600916 GTGGGGTGTGAAGCAGACC 60.601 63.158 5.26 5.26 45.54 3.85
4045 4338 2.358737 GGGGTGTGAAGCAGACCG 60.359 66.667 7.53 0.00 46.96 4.79
4076 4369 2.432300 GCTAGGTTCCCTGCGCCTA 61.432 63.158 4.18 0.00 34.61 3.93
4137 4430 3.049912 GCGATTTGTTCTGTTTTGGTCC 58.950 45.455 0.00 0.00 0.00 4.46
4163 4456 4.063967 TGCCTCGGCGTAGTGGTG 62.064 66.667 6.85 0.00 45.51 4.17
4171 4464 1.801395 CGGCGTAGTGGTGAATCGATT 60.801 52.381 11.20 11.20 0.00 3.34
4172 4465 1.593006 GGCGTAGTGGTGAATCGATTG 59.407 52.381 16.96 0.00 0.00 2.67
4214 4508 1.134367 CTCCGGCTCACTTGACGAATA 59.866 52.381 0.00 0.00 0.00 1.75
4248 5569 5.823209 GGTAATTACCCTTACGTTGCAAT 57.177 39.130 22.15 0.00 40.53 3.56
4272 5593 6.797454 TGGGATACATTATTAAAACGTTGGC 58.203 36.000 0.00 0.00 39.74 4.52
4273 5594 6.183360 TGGGATACATTATTAAAACGTTGGCC 60.183 38.462 0.00 0.00 39.74 5.36
4274 5595 6.210796 GGATACATTATTAAAACGTTGGCCC 58.789 40.000 0.00 0.00 0.00 5.80
4275 5596 6.040054 GGATACATTATTAAAACGTTGGCCCT 59.960 38.462 0.00 0.00 0.00 5.19
4276 5597 5.066968 ACATTATTAAAACGTTGGCCCTG 57.933 39.130 0.00 0.00 0.00 4.45
4277 5598 4.525100 ACATTATTAAAACGTTGGCCCTGT 59.475 37.500 0.00 0.00 0.00 4.00
4278 5599 5.011227 ACATTATTAAAACGTTGGCCCTGTT 59.989 36.000 0.00 0.00 0.00 3.16
4279 5600 5.532664 TTATTAAAACGTTGGCCCTGTTT 57.467 34.783 0.00 5.73 37.41 2.83
4280 5601 2.873133 TAAAACGTTGGCCCTGTTTG 57.127 45.000 15.27 0.00 36.07 2.93
4281 5602 0.176910 AAAACGTTGGCCCTGTTTGG 59.823 50.000 15.27 0.00 36.07 3.28
4282 5603 0.684805 AAACGTTGGCCCTGTTTGGA 60.685 50.000 14.17 0.00 38.35 3.53
4283 5604 0.469144 AACGTTGGCCCTGTTTGGAT 60.469 50.000 0.00 0.00 38.35 3.41
4284 5605 0.893727 ACGTTGGCCCTGTTTGGATC 60.894 55.000 0.00 0.00 38.35 3.36
4285 5606 0.893270 CGTTGGCCCTGTTTGGATCA 60.893 55.000 0.00 0.00 38.35 2.92
4286 5607 1.560505 GTTGGCCCTGTTTGGATCAT 58.439 50.000 0.00 0.00 38.35 2.45
4287 5608 1.205417 GTTGGCCCTGTTTGGATCATG 59.795 52.381 0.00 0.00 38.35 3.07
4288 5609 0.324552 TGGCCCTGTTTGGATCATGG 60.325 55.000 0.00 0.00 38.35 3.66
4289 5610 0.033208 GGCCCTGTTTGGATCATGGA 60.033 55.000 0.00 0.00 38.35 3.41
4290 5611 1.396653 GCCCTGTTTGGATCATGGAG 58.603 55.000 0.00 0.00 38.35 3.86
4291 5612 1.341383 GCCCTGTTTGGATCATGGAGT 60.341 52.381 0.00 0.00 38.35 3.85
4292 5613 2.885554 GCCCTGTTTGGATCATGGAGTT 60.886 50.000 0.00 0.00 38.35 3.01
4293 5614 3.624707 GCCCTGTTTGGATCATGGAGTTA 60.625 47.826 0.00 0.00 38.35 2.24
4294 5615 4.202441 CCCTGTTTGGATCATGGAGTTAG 58.798 47.826 0.00 0.00 38.35 2.34
4295 5616 4.080356 CCCTGTTTGGATCATGGAGTTAGA 60.080 45.833 0.00 0.00 38.35 2.10
4296 5617 5.121811 CCTGTTTGGATCATGGAGTTAGAG 58.878 45.833 0.00 0.00 38.35 2.43
4297 5618 4.517285 TGTTTGGATCATGGAGTTAGAGC 58.483 43.478 0.00 0.00 0.00 4.09
4298 5619 4.225942 TGTTTGGATCATGGAGTTAGAGCT 59.774 41.667 0.00 0.00 0.00 4.09
4299 5620 5.425217 TGTTTGGATCATGGAGTTAGAGCTA 59.575 40.000 0.00 0.00 0.00 3.32
4300 5621 5.798125 TTGGATCATGGAGTTAGAGCTAG 57.202 43.478 0.00 0.00 0.00 3.42
4301 5622 4.809193 TGGATCATGGAGTTAGAGCTAGT 58.191 43.478 0.00 0.00 0.00 2.57
4302 5623 5.211973 TGGATCATGGAGTTAGAGCTAGTT 58.788 41.667 0.00 0.00 0.00 2.24
4303 5624 5.663106 TGGATCATGGAGTTAGAGCTAGTTT 59.337 40.000 0.00 0.00 0.00 2.66
4304 5625 5.988561 GGATCATGGAGTTAGAGCTAGTTTG 59.011 44.000 0.00 0.00 0.00 2.93
4305 5626 5.344743 TCATGGAGTTAGAGCTAGTTTGG 57.655 43.478 0.00 0.00 0.00 3.28
4306 5627 4.162320 TCATGGAGTTAGAGCTAGTTTGGG 59.838 45.833 0.00 0.00 0.00 4.12
4307 5628 3.517612 TGGAGTTAGAGCTAGTTTGGGT 58.482 45.455 0.00 0.00 0.00 4.51
4308 5629 3.908103 TGGAGTTAGAGCTAGTTTGGGTT 59.092 43.478 0.00 0.00 0.00 4.11
4309 5630 5.088730 TGGAGTTAGAGCTAGTTTGGGTTA 58.911 41.667 0.00 0.00 0.00 2.85
4310 5631 5.187186 TGGAGTTAGAGCTAGTTTGGGTTAG 59.813 44.000 0.00 0.00 0.00 2.34
4311 5632 5.187381 GGAGTTAGAGCTAGTTTGGGTTAGT 59.813 44.000 0.00 0.00 0.00 2.24
4312 5633 6.295745 GGAGTTAGAGCTAGTTTGGGTTAGTT 60.296 42.308 0.00 0.00 0.00 2.24
4313 5634 6.465084 AGTTAGAGCTAGTTTGGGTTAGTTG 58.535 40.000 0.00 0.00 0.00 3.16
4314 5635 4.287766 AGAGCTAGTTTGGGTTAGTTGG 57.712 45.455 0.00 0.00 0.00 3.77
4315 5636 3.908103 AGAGCTAGTTTGGGTTAGTTGGA 59.092 43.478 0.00 0.00 0.00 3.53
4316 5637 4.020128 AGAGCTAGTTTGGGTTAGTTGGAG 60.020 45.833 0.00 0.00 0.00 3.86
4317 5638 3.009143 AGCTAGTTTGGGTTAGTTGGAGG 59.991 47.826 0.00 0.00 0.00 4.30
4318 5639 2.287977 AGTTTGGGTTAGTTGGAGGC 57.712 50.000 0.00 0.00 0.00 4.70
4319 5640 1.780919 AGTTTGGGTTAGTTGGAGGCT 59.219 47.619 0.00 0.00 0.00 4.58
4320 5641 2.160205 GTTTGGGTTAGTTGGAGGCTC 58.840 52.381 5.78 5.78 0.00 4.70
4321 5642 1.440618 TTGGGTTAGTTGGAGGCTCA 58.559 50.000 17.69 0.00 0.00 4.26
4322 5643 1.440618 TGGGTTAGTTGGAGGCTCAA 58.559 50.000 17.69 0.76 0.00 3.02
4323 5644 1.777878 TGGGTTAGTTGGAGGCTCAAA 59.222 47.619 17.69 8.86 0.00 2.69
4324 5645 2.378547 TGGGTTAGTTGGAGGCTCAAAT 59.621 45.455 17.69 10.35 0.00 2.32
4325 5646 3.589735 TGGGTTAGTTGGAGGCTCAAATA 59.410 43.478 17.69 9.40 0.00 1.40
4326 5647 4.043561 TGGGTTAGTTGGAGGCTCAAATAA 59.956 41.667 17.69 14.31 35.65 1.40
4328 5649 5.562506 GTTAGTTGGAGGCTCAAATAACC 57.437 43.478 23.76 9.22 45.01 2.85
4329 5650 3.087370 AGTTGGAGGCTCAAATAACCC 57.913 47.619 17.69 0.00 0.00 4.11
4330 5651 2.378547 AGTTGGAGGCTCAAATAACCCA 59.621 45.455 17.69 0.00 0.00 4.51
4331 5652 3.161866 GTTGGAGGCTCAAATAACCCAA 58.838 45.455 17.69 6.39 0.00 4.12
4332 5653 3.534357 TGGAGGCTCAAATAACCCAAA 57.466 42.857 17.69 0.00 0.00 3.28
4333 5654 3.850752 TGGAGGCTCAAATAACCCAAAA 58.149 40.909 17.69 0.00 0.00 2.44
4334 5655 3.831911 TGGAGGCTCAAATAACCCAAAAG 59.168 43.478 17.69 0.00 0.00 2.27
4335 5656 3.832490 GGAGGCTCAAATAACCCAAAAGT 59.168 43.478 17.69 0.00 0.00 2.66
4336 5657 5.014202 GGAGGCTCAAATAACCCAAAAGTA 58.986 41.667 17.69 0.00 0.00 2.24
4337 5658 5.656859 GGAGGCTCAAATAACCCAAAAGTAT 59.343 40.000 17.69 0.00 0.00 2.12
4338 5659 6.183360 GGAGGCTCAAATAACCCAAAAGTATC 60.183 42.308 17.69 0.00 0.00 2.24
4339 5660 5.656859 AGGCTCAAATAACCCAAAAGTATCC 59.343 40.000 0.00 0.00 0.00 2.59
4340 5661 5.420739 GGCTCAAATAACCCAAAAGTATCCA 59.579 40.000 0.00 0.00 0.00 3.41
4341 5662 6.071051 GGCTCAAATAACCCAAAAGTATCCAA 60.071 38.462 0.00 0.00 0.00 3.53
4342 5663 7.382898 GCTCAAATAACCCAAAAGTATCCAAA 58.617 34.615 0.00 0.00 0.00 3.28
4343 5664 7.330946 GCTCAAATAACCCAAAAGTATCCAAAC 59.669 37.037 0.00 0.00 0.00 2.93
4344 5665 8.251383 TCAAATAACCCAAAAGTATCCAAACA 57.749 30.769 0.00 0.00 0.00 2.83
4345 5666 8.364142 TCAAATAACCCAAAAGTATCCAAACAG 58.636 33.333 0.00 0.00 0.00 3.16
4346 5667 6.850752 ATAACCCAAAAGTATCCAAACAGG 57.149 37.500 0.00 0.00 39.47 4.00
4347 5668 3.506398 ACCCAAAAGTATCCAAACAGGG 58.494 45.455 0.00 0.00 39.66 4.45
4348 5669 3.141272 ACCCAAAAGTATCCAAACAGGGA 59.859 43.478 0.00 0.00 42.21 4.20
4349 5670 3.763897 CCCAAAAGTATCCAAACAGGGAG 59.236 47.826 0.00 0.00 41.08 4.30
4350 5671 3.763897 CCAAAAGTATCCAAACAGGGAGG 59.236 47.826 0.00 0.00 41.08 4.30
4351 5672 3.739401 AAAGTATCCAAACAGGGAGGG 57.261 47.619 0.00 0.00 41.08 4.30
4352 5673 2.361085 AGTATCCAAACAGGGAGGGT 57.639 50.000 0.00 0.00 41.08 4.34
4353 5674 2.644151 AGTATCCAAACAGGGAGGGTT 58.356 47.619 0.00 0.00 41.08 4.11
4354 5675 3.810623 AGTATCCAAACAGGGAGGGTTA 58.189 45.455 0.00 0.00 41.08 2.85
4355 5676 3.780850 AGTATCCAAACAGGGAGGGTTAG 59.219 47.826 0.00 0.00 41.08 2.34
4356 5677 2.426431 TCCAAACAGGGAGGGTTAGA 57.574 50.000 0.00 0.00 38.24 2.10
4357 5678 2.266279 TCCAAACAGGGAGGGTTAGAG 58.734 52.381 0.00 0.00 38.24 2.43
4358 5679 1.985895 CCAAACAGGGAGGGTTAGAGT 59.014 52.381 0.00 0.00 0.00 3.24
4359 5680 3.178865 CCAAACAGGGAGGGTTAGAGTA 58.821 50.000 0.00 0.00 0.00 2.59
4360 5681 3.197983 CCAAACAGGGAGGGTTAGAGTAG 59.802 52.174 0.00 0.00 0.00 2.57
4361 5682 2.850695 ACAGGGAGGGTTAGAGTAGG 57.149 55.000 0.00 0.00 0.00 3.18
4362 5683 2.009165 ACAGGGAGGGTTAGAGTAGGT 58.991 52.381 0.00 0.00 0.00 3.08
4363 5684 2.386113 ACAGGGAGGGTTAGAGTAGGTT 59.614 50.000 0.00 0.00 0.00 3.50
4364 5685 3.599698 ACAGGGAGGGTTAGAGTAGGTTA 59.400 47.826 0.00 0.00 0.00 2.85
4365 5686 4.216708 CAGGGAGGGTTAGAGTAGGTTAG 58.783 52.174 0.00 0.00 0.00 2.34
4366 5687 3.863538 AGGGAGGGTTAGAGTAGGTTAGT 59.136 47.826 0.00 0.00 0.00 2.24
4367 5688 4.297123 AGGGAGGGTTAGAGTAGGTTAGTT 59.703 45.833 0.00 0.00 0.00 2.24
4368 5689 5.028802 GGGAGGGTTAGAGTAGGTTAGTTT 58.971 45.833 0.00 0.00 0.00 2.66
4369 5690 5.128499 GGGAGGGTTAGAGTAGGTTAGTTTC 59.872 48.000 0.00 0.00 0.00 2.78
4370 5691 5.718607 GGAGGGTTAGAGTAGGTTAGTTTCA 59.281 44.000 0.00 0.00 0.00 2.69
4371 5692 6.383436 GGAGGGTTAGAGTAGGTTAGTTTCAT 59.617 42.308 0.00 0.00 0.00 2.57
4372 5693 7.417683 GGAGGGTTAGAGTAGGTTAGTTTCATC 60.418 44.444 0.00 0.00 0.00 2.92
4373 5694 7.190501 AGGGTTAGAGTAGGTTAGTTTCATCT 58.809 38.462 0.00 0.00 0.00 2.90
4374 5695 8.342270 AGGGTTAGAGTAGGTTAGTTTCATCTA 58.658 37.037 0.00 0.00 0.00 1.98
4375 5696 8.975295 GGGTTAGAGTAGGTTAGTTTCATCTAA 58.025 37.037 0.00 0.00 0.00 2.10
4376 5697 9.800433 GGTTAGAGTAGGTTAGTTTCATCTAAC 57.200 37.037 11.46 11.46 45.03 2.34
4387 5708 8.890718 GTTAGTTTCATCTAACCCAACTATTCC 58.109 37.037 5.59 0.00 41.99 3.01
4388 5709 7.027874 AGTTTCATCTAACCCAACTATTCCA 57.972 36.000 0.00 0.00 0.00 3.53
4389 5710 7.112779 AGTTTCATCTAACCCAACTATTCCAG 58.887 38.462 0.00 0.00 0.00 3.86
4390 5711 6.636454 TTCATCTAACCCAACTATTCCAGT 57.364 37.500 0.00 0.00 40.05 4.00
4391 5712 5.989477 TCATCTAACCCAACTATTCCAGTG 58.011 41.667 0.00 0.00 37.63 3.66
4392 5713 4.837093 TCTAACCCAACTATTCCAGTGG 57.163 45.455 1.40 1.40 37.63 4.00
4393 5714 4.431378 TCTAACCCAACTATTCCAGTGGA 58.569 43.478 8.12 8.12 37.63 4.02
4394 5715 3.721087 AACCCAACTATTCCAGTGGAG 57.279 47.619 12.67 3.48 37.63 3.86
4395 5716 2.915869 ACCCAACTATTCCAGTGGAGA 58.084 47.619 12.67 3.79 37.63 3.71
4396 5717 2.840651 ACCCAACTATTCCAGTGGAGAG 59.159 50.000 12.67 15.65 37.63 3.20
4397 5718 2.171448 CCCAACTATTCCAGTGGAGAGG 59.829 54.545 21.29 14.01 37.63 3.69
4398 5719 2.840651 CCAACTATTCCAGTGGAGAGGT 59.159 50.000 21.29 15.28 37.63 3.85
4399 5720 3.369892 CCAACTATTCCAGTGGAGAGGTG 60.370 52.174 24.69 24.69 37.63 4.00
4400 5721 1.834263 ACTATTCCAGTGGAGAGGTGC 59.166 52.381 21.29 0.00 35.62 5.01
4401 5722 2.114616 CTATTCCAGTGGAGAGGTGCT 58.885 52.381 12.67 0.00 31.21 4.40
4402 5723 1.366319 ATTCCAGTGGAGAGGTGCTT 58.634 50.000 12.67 0.00 31.21 3.91
4403 5724 2.024176 TTCCAGTGGAGAGGTGCTTA 57.976 50.000 12.67 0.00 31.21 3.09
4404 5725 2.254152 TCCAGTGGAGAGGTGCTTAT 57.746 50.000 8.12 0.00 0.00 1.73
4405 5726 2.551270 TCCAGTGGAGAGGTGCTTATT 58.449 47.619 8.12 0.00 0.00 1.40
4406 5727 2.912956 TCCAGTGGAGAGGTGCTTATTT 59.087 45.455 8.12 0.00 0.00 1.40
4407 5728 3.012518 CCAGTGGAGAGGTGCTTATTTG 58.987 50.000 1.68 0.00 0.00 2.32
4408 5729 3.012518 CAGTGGAGAGGTGCTTATTTGG 58.987 50.000 0.00 0.00 0.00 3.28
4409 5730 2.912956 AGTGGAGAGGTGCTTATTTGGA 59.087 45.455 0.00 0.00 0.00 3.53
4410 5731 3.525199 AGTGGAGAGGTGCTTATTTGGAT 59.475 43.478 0.00 0.00 0.00 3.41
4411 5732 4.018050 AGTGGAGAGGTGCTTATTTGGATT 60.018 41.667 0.00 0.00 0.00 3.01
4412 5733 5.191722 AGTGGAGAGGTGCTTATTTGGATTA 59.808 40.000 0.00 0.00 0.00 1.75
4413 5734 5.529060 GTGGAGAGGTGCTTATTTGGATTAG 59.471 44.000 0.00 0.00 0.00 1.73
4414 5735 5.428457 TGGAGAGGTGCTTATTTGGATTAGA 59.572 40.000 0.00 0.00 0.00 2.10
4415 5736 5.994668 GGAGAGGTGCTTATTTGGATTAGAG 59.005 44.000 0.00 0.00 0.00 2.43
4416 5737 6.408662 GGAGAGGTGCTTATTTGGATTAGAGT 60.409 42.308 0.00 0.00 0.00 3.24
4417 5738 6.352516 AGAGGTGCTTATTTGGATTAGAGTG 58.647 40.000 0.00 0.00 0.00 3.51
4418 5739 5.440610 AGGTGCTTATTTGGATTAGAGTGG 58.559 41.667 0.00 0.00 0.00 4.00
4419 5740 4.580580 GGTGCTTATTTGGATTAGAGTGGG 59.419 45.833 0.00 0.00 0.00 4.61
4420 5741 5.193679 GTGCTTATTTGGATTAGAGTGGGT 58.806 41.667 0.00 0.00 0.00 4.51
4421 5742 5.652452 GTGCTTATTTGGATTAGAGTGGGTT 59.348 40.000 0.00 0.00 0.00 4.11
4422 5743 6.826741 GTGCTTATTTGGATTAGAGTGGGTTA 59.173 38.462 0.00 0.00 0.00 2.85
4423 5744 7.012421 GTGCTTATTTGGATTAGAGTGGGTTAG 59.988 40.741 0.00 0.00 0.00 2.34
4424 5745 7.092623 TGCTTATTTGGATTAGAGTGGGTTAGA 60.093 37.037 0.00 0.00 0.00 2.10
4425 5746 7.773690 GCTTATTTGGATTAGAGTGGGTTAGAA 59.226 37.037 0.00 0.00 0.00 2.10
4426 5747 9.681062 CTTATTTGGATTAGAGTGGGTTAGAAA 57.319 33.333 0.00 0.00 0.00 2.52
4431 5752 9.457436 TTGGATTAGAGTGGGTTAGAAAATAAC 57.543 33.333 0.00 0.00 0.00 1.89
4432 5753 8.832735 TGGATTAGAGTGGGTTAGAAAATAACT 58.167 33.333 0.00 0.00 0.00 2.24
4433 5754 9.327628 GGATTAGAGTGGGTTAGAAAATAACTC 57.672 37.037 0.00 0.00 34.21 3.01
4462 5783 8.690680 CTCTAACTGTGTTAGAGTATCCAAAC 57.309 38.462 26.67 0.00 41.73 2.93
4463 5784 8.185506 TCTAACTGTGTTAGAGTATCCAAACA 57.814 34.615 14.02 0.00 38.63 2.83
4464 5785 8.304596 TCTAACTGTGTTAGAGTATCCAAACAG 58.695 37.037 14.02 0.00 40.68 3.16
4465 5786 5.794894 ACTGTGTTAGAGTATCCAAACAGG 58.205 41.667 0.00 0.00 40.68 4.00
4542 5863 9.599866 AAAAATAAAATTAACTCTAGGCCATGC 57.400 29.630 5.01 0.00 0.00 4.06
4543 5864 8.539117 AAATAAAATTAACTCTAGGCCATGCT 57.461 30.769 5.01 0.00 0.00 3.79
4544 5865 7.751768 ATAAAATTAACTCTAGGCCATGCTC 57.248 36.000 5.01 0.00 0.00 4.26
4545 5866 2.890808 TTAACTCTAGGCCATGCTCG 57.109 50.000 5.01 0.00 0.00 5.03
4566 6480 3.335579 GGTTAGTTCAGATCCGTTGCTT 58.664 45.455 0.00 0.00 0.00 3.91
4600 6530 1.234615 GGTTTTGCTAGCTCGCCACA 61.235 55.000 17.23 0.00 0.00 4.17
4681 6666 0.038892 GCACCACCACTCATTGCAAG 60.039 55.000 4.94 0.00 33.24 4.01
4682 6667 1.321474 CACCACCACTCATTGCAAGT 58.679 50.000 4.94 0.00 0.00 3.16
4684 6669 2.101249 CACCACCACTCATTGCAAGTTT 59.899 45.455 4.94 0.00 0.00 2.66
4685 6670 2.101249 ACCACCACTCATTGCAAGTTTG 59.899 45.455 4.94 0.00 0.00 2.93
4728 6713 5.910723 GTGGGTAAAACTTGTTAATCACACG 59.089 40.000 0.00 0.00 33.98 4.49
4736 6721 5.992729 ACTTGTTAATCACACGCGTATTTT 58.007 33.333 13.44 6.28 33.98 1.82
4738 6723 5.849357 TGTTAATCACACGCGTATTTTCT 57.151 34.783 13.44 0.00 0.00 2.52
4745 6730 5.404096 TCACACGCGTATTTTCTCTCATAA 58.596 37.500 13.44 0.00 0.00 1.90
4779 6764 6.992063 AAGTGTATTCAGTTCCATGATGAC 57.008 37.500 0.00 0.00 32.42 3.06
4781 6766 6.656902 AGTGTATTCAGTTCCATGATGACAT 58.343 36.000 0.00 0.00 37.19 3.06
4806 6791 4.776349 TCTTCTACTGCAACCAAGTCAAA 58.224 39.130 0.00 0.00 0.00 2.69
4808 6793 4.150897 TCTACTGCAACCAAGTCAAACT 57.849 40.909 0.00 0.00 0.00 2.66
4809 6794 4.127171 TCTACTGCAACCAAGTCAAACTC 58.873 43.478 0.00 0.00 0.00 3.01
4878 6863 8.358582 ACATGCCTTCATCTTTAGAAGAAAAT 57.641 30.769 4.61 0.00 44.00 1.82
4879 6864 9.466497 ACATGCCTTCATCTTTAGAAGAAAATA 57.534 29.630 4.61 0.00 44.00 1.40
4880 6865 9.727627 CATGCCTTCATCTTTAGAAGAAAATAC 57.272 33.333 4.61 0.00 44.00 1.89
4881 6866 8.862325 TGCCTTCATCTTTAGAAGAAAATACA 57.138 30.769 4.61 0.00 44.00 2.29
4910 6895 1.380650 TCGGGACCGATGTCATCCA 60.381 57.895 9.76 0.00 44.01 3.41
4916 6901 2.420642 GACCGATGTCATCCATCCATG 58.579 52.381 7.25 0.00 46.10 3.66
4935 6920 5.104776 TCCATGTCAAAAGCAGCTAGATAGT 60.105 40.000 0.00 0.00 0.00 2.12
4936 6921 6.098266 TCCATGTCAAAAGCAGCTAGATAGTA 59.902 38.462 0.00 0.00 0.00 1.82
4937 6922 6.763135 CCATGTCAAAAGCAGCTAGATAGTAA 59.237 38.462 0.00 0.00 0.00 2.24
4954 6939 7.806180 AGATAGTAAATGTGTAGCCATTCCTT 58.194 34.615 0.00 0.00 34.01 3.36
4955 6940 7.716998 AGATAGTAAATGTGTAGCCATTCCTTG 59.283 37.037 0.00 0.00 34.01 3.61
5004 6989 3.708403 TGAATCATCAGCTTGTCCACT 57.292 42.857 0.00 0.00 0.00 4.00
5006 6991 3.754850 TGAATCATCAGCTTGTCCACTTG 59.245 43.478 0.00 0.00 0.00 3.16
5012 6997 2.061773 CAGCTTGTCCACTTGTAGTCG 58.938 52.381 0.00 0.00 0.00 4.18
5026 7011 3.659786 TGTAGTCGCTTGTTATGCACTT 58.340 40.909 0.00 0.00 0.00 3.16
5037 7024 7.308435 GCTTGTTATGCACTTCAGATAAGTTT 58.692 34.615 0.00 0.00 0.00 2.66
5081 7068 1.216977 CCTCCAACGCATACCACGA 59.783 57.895 0.00 0.00 0.00 4.35
5082 7069 1.082117 CCTCCAACGCATACCACGAC 61.082 60.000 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 238 1.255667 GGGGTGCTCGGTAGAGTTGA 61.256 60.000 0.00 0.00 46.03 3.18
238 239 1.218316 GGGGTGCTCGGTAGAGTTG 59.782 63.158 0.00 0.00 46.03 3.16
239 240 2.348888 CGGGGTGCTCGGTAGAGTT 61.349 63.158 0.00 0.00 46.03 3.01
243 244 4.814294 GTGCGGGGTGCTCGGTAG 62.814 72.222 0.00 0.00 46.63 3.18
325 334 0.252467 CTCTGGAGGGGGTCAACTCT 60.252 60.000 0.00 0.00 34.22 3.24
354 363 3.764466 CGTCCTTCTCCGGCAGCT 61.764 66.667 0.00 0.00 0.00 4.24
517 526 3.637229 GGACGAGAGAATCCAGGATGTTA 59.363 47.826 1.44 0.00 34.87 2.41
518 527 2.432510 GGACGAGAGAATCCAGGATGTT 59.567 50.000 1.44 0.00 34.87 2.71
519 528 2.035632 GGACGAGAGAATCCAGGATGT 58.964 52.381 1.44 0.00 34.87 3.06
520 529 1.342819 GGGACGAGAGAATCCAGGATG 59.657 57.143 1.44 0.00 36.65 3.51
521 530 1.219213 AGGGACGAGAGAATCCAGGAT 59.781 52.381 0.00 0.00 36.65 3.24
522 531 0.631753 AGGGACGAGAGAATCCAGGA 59.368 55.000 0.00 0.00 36.65 3.86
523 532 0.749649 CAGGGACGAGAGAATCCAGG 59.250 60.000 0.00 0.00 36.65 4.45
524 533 1.135915 CACAGGGACGAGAGAATCCAG 59.864 57.143 0.00 0.00 36.65 3.86
525 534 1.186200 CACAGGGACGAGAGAATCCA 58.814 55.000 0.00 0.00 36.65 3.41
526 535 1.134965 CACACAGGGACGAGAGAATCC 60.135 57.143 0.00 0.00 33.66 3.01
527 536 1.546476 ACACACAGGGACGAGAGAATC 59.454 52.381 0.00 0.00 0.00 2.52
528 537 1.633774 ACACACAGGGACGAGAGAAT 58.366 50.000 0.00 0.00 0.00 2.40
529 538 1.410004 AACACACAGGGACGAGAGAA 58.590 50.000 0.00 0.00 0.00 2.87
530 539 1.884579 GTAACACACAGGGACGAGAGA 59.115 52.381 0.00 0.00 0.00 3.10
531 540 1.887198 AGTAACACACAGGGACGAGAG 59.113 52.381 0.00 0.00 0.00 3.20
532 541 1.884579 GAGTAACACACAGGGACGAGA 59.115 52.381 0.00 0.00 0.00 4.04
533 542 1.401148 CGAGTAACACACAGGGACGAG 60.401 57.143 0.00 0.00 0.00 4.18
534 543 0.594602 CGAGTAACACACAGGGACGA 59.405 55.000 0.00 0.00 0.00 4.20
535 544 0.388134 CCGAGTAACACACAGGGACG 60.388 60.000 0.00 0.00 0.00 4.79
536 545 0.669625 GCCGAGTAACACACAGGGAC 60.670 60.000 0.00 0.00 0.00 4.46
537 546 1.669440 GCCGAGTAACACACAGGGA 59.331 57.895 0.00 0.00 0.00 4.20
538 547 1.375523 GGCCGAGTAACACACAGGG 60.376 63.158 0.00 0.00 0.00 4.45
539 548 0.250124 TTGGCCGAGTAACACACAGG 60.250 55.000 0.00 0.00 0.00 4.00
540 549 1.148310 CTTGGCCGAGTAACACACAG 58.852 55.000 12.40 0.00 0.00 3.66
619 629 2.813474 GCATAGGACGTGTGCGCA 60.813 61.111 5.66 5.66 42.83 6.09
620 630 2.094126 GATGCATAGGACGTGTGCGC 62.094 60.000 11.49 0.00 46.01 6.09
634 644 3.259064 GAGTAGTAGCAAAACCGATGCA 58.741 45.455 0.00 0.00 46.22 3.96
667 677 3.005684 TCAACACACTTTGGCCATTGATC 59.994 43.478 6.09 0.00 0.00 2.92
719 732 5.173312 CGACGTGAACATACTACCATTGATC 59.827 44.000 0.00 0.00 0.00 2.92
720 733 5.041287 CGACGTGAACATACTACCATTGAT 58.959 41.667 0.00 0.00 0.00 2.57
721 734 4.417506 CGACGTGAACATACTACCATTGA 58.582 43.478 0.00 0.00 0.00 2.57
722 735 3.000078 GCGACGTGAACATACTACCATTG 60.000 47.826 0.00 0.00 0.00 2.82
723 736 3.184541 GCGACGTGAACATACTACCATT 58.815 45.455 0.00 0.00 0.00 3.16
854 867 3.534941 TTGCTGTGCATGCAACCA 58.465 50.000 24.58 16.36 44.24 3.67
857 870 2.136728 GATTGTTTGCTGTGCATGCAA 58.863 42.857 24.58 20.95 46.90 4.08
885 898 8.072564 GTCTATGGACTGGTTCTGGACTACAG 62.073 50.000 1.27 0.00 42.45 2.74
886 899 2.391926 TGGACTGGTTCTGGACTACA 57.608 50.000 0.00 0.00 0.00 2.74
887 900 4.098196 GTCTATGGACTGGTTCTGGACTAC 59.902 50.000 1.27 0.00 39.24 2.73
888 901 4.279145 GTCTATGGACTGGTTCTGGACTA 58.721 47.826 1.27 0.00 39.24 2.59
890 903 3.528597 GTCTATGGACTGGTTCTGGAC 57.471 52.381 1.27 0.00 39.24 4.02
913 960 5.393124 CGTATGTGTAAACCGTACTCTTCA 58.607 41.667 0.00 0.00 0.00 3.02
915 962 4.168760 GCGTATGTGTAAACCGTACTCTT 58.831 43.478 0.00 0.00 0.00 2.85
918 965 3.244976 GTGCGTATGTGTAAACCGTACT 58.755 45.455 0.00 0.00 32.58 2.73
919 966 2.026742 CGTGCGTATGTGTAAACCGTAC 59.973 50.000 0.00 0.00 0.00 3.67
921 968 1.062258 CGTGCGTATGTGTAAACCGT 58.938 50.000 0.00 0.00 0.00 4.83
922 969 0.246989 GCGTGCGTATGTGTAAACCG 60.247 55.000 0.00 0.00 0.00 4.44
923 970 0.791422 TGCGTGCGTATGTGTAAACC 59.209 50.000 0.00 0.00 0.00 3.27
924 971 1.780636 CGTGCGTGCGTATGTGTAAAC 60.781 52.381 0.00 0.00 0.00 2.01
925 972 0.435388 CGTGCGTGCGTATGTGTAAA 59.565 50.000 0.00 0.00 0.00 2.01
991 1046 0.918983 TTCTTCCCCATCTCGGCAAT 59.081 50.000 0.00 0.00 0.00 3.56
992 1047 0.695924 TTTCTTCCCCATCTCGGCAA 59.304 50.000 0.00 0.00 0.00 4.52
994 1049 0.464554 CCTTTCTTCCCCATCTCGGC 60.465 60.000 0.00 0.00 0.00 5.54
995 1050 0.912486 ACCTTTCTTCCCCATCTCGG 59.088 55.000 0.00 0.00 0.00 4.63
996 1051 1.407437 CCACCTTTCTTCCCCATCTCG 60.407 57.143 0.00 0.00 0.00 4.04
997 1052 1.916181 TCCACCTTTCTTCCCCATCTC 59.084 52.381 0.00 0.00 0.00 2.75
1031 1086 4.452733 CGTCGTCCTGCCCCTTCC 62.453 72.222 0.00 0.00 0.00 3.46
1133 1188 1.805945 GGGCGTATGCGATCGATCC 60.806 63.158 21.57 12.54 44.10 3.36
1139 1194 1.372997 GTGATCGGGCGTATGCGAT 60.373 57.895 7.60 0.00 44.10 4.58
1150 1205 0.740737 GCTGGGAAAATGGTGATCGG 59.259 55.000 0.00 0.00 0.00 4.18
1164 1253 0.469331 ATGGCATGATCCAAGCTGGG 60.469 55.000 0.00 0.00 39.96 4.45
1272 1362 1.831736 CCCTGAACGAATCCAGGTAGT 59.168 52.381 0.00 0.00 46.47 2.73
1559 1667 2.034558 CCACAAAGCTACACTTGTTGGG 59.965 50.000 0.00 0.00 39.09 4.12
1563 1671 3.118408 TCTGACCACAAAGCTACACTTGT 60.118 43.478 0.00 0.00 39.09 3.16
1687 1798 2.290122 CTGCATTCCTCTCGACGGCT 62.290 60.000 0.00 0.00 0.00 5.52
1699 1810 1.363744 CCTTGACGAGGTCTGCATTC 58.636 55.000 0.00 0.00 40.95 2.67
1759 1870 7.094549 ACACCAAGCTTAATTAATTACGCAGAA 60.095 33.333 28.29 8.50 39.23 3.02
1760 1871 6.373216 ACACCAAGCTTAATTAATTACGCAGA 59.627 34.615 28.29 7.62 39.23 4.26
1761 1872 6.551736 ACACCAAGCTTAATTAATTACGCAG 58.448 36.000 28.29 21.76 39.23 5.18
1763 1874 7.465989 TGTACACCAAGCTTAATTAATTACGC 58.534 34.615 22.58 22.58 37.66 4.42
1764 1875 9.646336 GATGTACACCAAGCTTAATTAATTACG 57.354 33.333 7.43 7.31 0.00 3.18
1776 1887 1.476891 ACGATCGATGTACACCAAGCT 59.523 47.619 24.34 0.00 0.00 3.74
1782 1893 2.857748 TCATGCAACGATCGATGTACAC 59.142 45.455 24.34 7.91 0.00 2.90
1783 1894 3.157932 TCATGCAACGATCGATGTACA 57.842 42.857 24.34 14.60 0.00 2.90
1786 1897 3.242837 CCAATTCATGCAACGATCGATGT 60.243 43.478 24.34 1.95 0.00 3.06
1789 1900 1.670295 CCCAATTCATGCAACGATCGA 59.330 47.619 24.34 0.00 0.00 3.59
1790 1901 1.670295 TCCCAATTCATGCAACGATCG 59.330 47.619 14.88 14.88 0.00 3.69
1796 1907 2.607499 ACCAACTCCCAATTCATGCAA 58.393 42.857 0.00 0.00 0.00 4.08
1803 1914 5.010708 ACCATAGAAACCAACTCCCAATT 57.989 39.130 0.00 0.00 0.00 2.32
1806 1917 3.655777 AGAACCATAGAAACCAACTCCCA 59.344 43.478 0.00 0.00 0.00 4.37
1807 1918 4.019231 AGAGAACCATAGAAACCAACTCCC 60.019 45.833 0.00 0.00 0.00 4.30
1808 1919 5.167303 AGAGAACCATAGAAACCAACTCC 57.833 43.478 0.00 0.00 0.00 3.85
1809 1920 5.794894 TGAGAGAACCATAGAAACCAACTC 58.205 41.667 0.00 0.00 0.00 3.01
1811 1922 5.940470 ACATGAGAGAACCATAGAAACCAAC 59.060 40.000 0.00 0.00 0.00 3.77
1812 1923 6.126863 ACATGAGAGAACCATAGAAACCAA 57.873 37.500 0.00 0.00 0.00 3.67
1813 1924 5.248248 TGACATGAGAGAACCATAGAAACCA 59.752 40.000 0.00 0.00 0.00 3.67
1814 1925 5.734720 TGACATGAGAGAACCATAGAAACC 58.265 41.667 0.00 0.00 0.00 3.27
1822 1941 4.622260 TTCACATGACATGAGAGAACCA 57.378 40.909 22.19 1.50 31.67 3.67
1824 1943 6.018098 GGATCATTCACATGACATGAGAGAAC 60.018 42.308 22.19 11.71 42.46 3.01
1827 1946 5.612351 AGGATCATTCACATGACATGAGAG 58.388 41.667 22.19 8.79 42.46 3.20
1833 1952 5.625568 ATCAGAGGATCATTCACATGACA 57.374 39.130 0.00 0.00 42.46 3.58
1875 1994 2.030562 CCGCCGGTCAGTGAAGTT 59.969 61.111 1.90 0.00 0.00 2.66
1934 2080 2.024319 GCTTGCGACTCGTTGAGCT 61.024 57.895 12.54 0.00 32.04 4.09
2031 2177 1.948635 CTTTGTTTTGCCCGTGCCG 60.949 57.895 0.00 0.00 36.33 5.69
2271 2423 2.103373 TCCAGGAAGATCTCGTTGAGG 58.897 52.381 0.00 0.00 0.00 3.86
2298 2450 1.291877 ACTTGCTTAGCCGCTTGACG 61.292 55.000 0.29 0.00 43.15 4.35
2301 2453 1.154150 GCACTTGCTTAGCCGCTTG 60.154 57.895 0.29 0.00 38.21 4.01
2395 2547 1.927174 GCGTGCTAACTGATACTGGTG 59.073 52.381 0.00 0.00 0.00 4.17
2407 2559 3.777465 AGTATTCTTCTCGCGTGCTAA 57.223 42.857 5.77 0.00 0.00 3.09
2517 2672 0.029567 CGATGTCTCTAGGGACGTGC 59.970 60.000 22.37 12.17 38.91 5.34
2598 2753 1.888736 GTTCTTCCCGCCGAGTAGT 59.111 57.895 0.00 0.00 0.00 2.73
2601 2756 4.736896 GCGTTCTTCCCGCCGAGT 62.737 66.667 0.00 0.00 45.20 4.18
2642 2804 2.877113 TCGCCGTACGCATGAACG 60.877 61.111 10.49 6.25 43.23 3.95
2874 3036 2.959071 GCAGCCTCGTCGATCAGC 60.959 66.667 0.00 0.00 0.00 4.26
2922 3084 2.037136 CAGCCCGGAGACTTGCAAG 61.037 63.158 24.84 24.84 0.00 4.01
3001 3163 4.279922 TGAACGGAGAACTGAACTGATACA 59.720 41.667 0.00 0.00 0.00 2.29
3043 3273 7.367285 TGCTCAAGTTTGTGGATAAACATAAC 58.633 34.615 0.00 0.00 41.76 1.89
3052 3282 7.944729 AGTAATAATGCTCAAGTTTGTGGAT 57.055 32.000 0.00 0.00 34.85 3.41
3054 3284 7.370383 ACAAGTAATAATGCTCAAGTTTGTGG 58.630 34.615 0.00 0.00 0.00 4.17
3056 3286 7.382218 GCAACAAGTAATAATGCTCAAGTTTGT 59.618 33.333 0.00 0.00 34.29 2.83
3146 3378 1.457346 CATGTTCAGGAGGTGCTTCC 58.543 55.000 0.00 0.00 37.52 3.46
3205 3437 2.826128 TCTGCCTGTCGTAGAAACTGAT 59.174 45.455 0.00 0.00 39.69 2.90
3376 3608 2.886081 CTTGAGACTGCGCAGTATCTT 58.114 47.619 45.61 31.15 46.63 2.40
3592 3868 0.038526 ACGGAGTTGACGCGAAGAAT 60.039 50.000 15.93 0.00 37.78 2.40
3640 3916 1.967066 GACGGTGGAGAGGATGATGAT 59.033 52.381 0.00 0.00 0.00 2.45
3761 4045 3.058914 CGTTTTCCAAGTTCAGGTAGCTG 60.059 47.826 15.93 15.93 0.00 4.24
3763 4047 3.059120 GTCGTTTTCCAAGTTCAGGTAGC 60.059 47.826 0.00 0.00 0.00 3.58
3820 4113 0.183014 CAGGATCCAGAGGCAATGCT 59.817 55.000 15.82 0.00 0.00 3.79
3824 4117 2.683465 GCCCAGGATCCAGAGGCAA 61.683 63.158 26.41 0.00 43.32 4.52
3902 4195 2.430921 AAGAAGCACCGACGCTCG 60.431 61.111 0.00 1.17 42.89 5.03
4002 4295 2.747446 ACTGCGTGTCAAAAGTTGAAGT 59.253 40.909 0.00 0.00 42.15 3.01
4023 4316 1.152777 CTGCTTCACACCCCACCAA 60.153 57.895 0.00 0.00 0.00 3.67
4044 4337 2.011349 CTAGCGCGCCACAGATACG 61.011 63.158 30.33 0.00 0.00 3.06
4045 4338 1.661821 CCTAGCGCGCCACAGATAC 60.662 63.158 30.33 0.00 0.00 2.24
4073 4366 1.221414 GGTGCATTCGCTAAGCTAGG 58.779 55.000 0.00 0.00 39.64 3.02
4076 4369 1.026718 GGTGGTGCATTCGCTAAGCT 61.027 55.000 0.00 0.00 39.64 3.74
4112 4405 2.793278 AAACAGAACAAATCGCCACC 57.207 45.000 0.00 0.00 0.00 4.61
4163 4456 2.221055 GCCGTCCATACACAATCGATTC 59.779 50.000 7.92 0.00 0.00 2.52
4171 4464 0.398696 AAGGTTGCCGTCCATACACA 59.601 50.000 0.00 0.00 0.00 3.72
4172 4465 1.530323 AAAGGTTGCCGTCCATACAC 58.470 50.000 0.00 0.00 0.00 2.90
4233 5554 0.402504 TCCCATTGCAACGTAAGGGT 59.597 50.000 17.23 0.00 46.39 4.34
4237 5558 7.575414 AATAATGTATCCCATTGCAACGTAA 57.425 32.000 0.00 0.00 43.63 3.18
4239 5560 7.575414 TTAATAATGTATCCCATTGCAACGT 57.425 32.000 0.00 0.00 43.63 3.99
4241 5562 8.751335 CGTTTTAATAATGTATCCCATTGCAAC 58.249 33.333 0.00 0.00 43.63 4.17
4248 5569 6.183360 GGCCAACGTTTTAATAATGTATCCCA 60.183 38.462 0.00 0.00 0.00 4.37
4271 5592 1.341383 ACTCCATGATCCAAACAGGGC 60.341 52.381 0.00 0.00 38.79 5.19
4272 5593 2.814805 ACTCCATGATCCAAACAGGG 57.185 50.000 0.00 0.00 40.03 4.45
4273 5594 5.102953 TCTAACTCCATGATCCAAACAGG 57.897 43.478 0.00 0.00 39.47 4.00
4274 5595 4.574013 GCTCTAACTCCATGATCCAAACAG 59.426 45.833 0.00 0.00 0.00 3.16
4275 5596 4.225942 AGCTCTAACTCCATGATCCAAACA 59.774 41.667 0.00 0.00 0.00 2.83
4276 5597 4.775236 AGCTCTAACTCCATGATCCAAAC 58.225 43.478 0.00 0.00 0.00 2.93
4277 5598 5.663106 ACTAGCTCTAACTCCATGATCCAAA 59.337 40.000 0.00 0.00 0.00 3.28
4278 5599 5.211973 ACTAGCTCTAACTCCATGATCCAA 58.788 41.667 0.00 0.00 0.00 3.53
4279 5600 4.809193 ACTAGCTCTAACTCCATGATCCA 58.191 43.478 0.00 0.00 0.00 3.41
4280 5601 5.799827 AACTAGCTCTAACTCCATGATCC 57.200 43.478 0.00 0.00 0.00 3.36
4281 5602 5.988561 CCAAACTAGCTCTAACTCCATGATC 59.011 44.000 0.00 0.00 0.00 2.92
4282 5603 5.163258 CCCAAACTAGCTCTAACTCCATGAT 60.163 44.000 0.00 0.00 0.00 2.45
4283 5604 4.162320 CCCAAACTAGCTCTAACTCCATGA 59.838 45.833 0.00 0.00 0.00 3.07
4284 5605 4.080863 ACCCAAACTAGCTCTAACTCCATG 60.081 45.833 0.00 0.00 0.00 3.66
4285 5606 4.104831 ACCCAAACTAGCTCTAACTCCAT 58.895 43.478 0.00 0.00 0.00 3.41
4286 5607 3.517612 ACCCAAACTAGCTCTAACTCCA 58.482 45.455 0.00 0.00 0.00 3.86
4287 5608 4.554960 AACCCAAACTAGCTCTAACTCC 57.445 45.455 0.00 0.00 0.00 3.85
4288 5609 6.283544 ACTAACCCAAACTAGCTCTAACTC 57.716 41.667 0.00 0.00 0.00 3.01
4289 5610 6.465084 CAACTAACCCAAACTAGCTCTAACT 58.535 40.000 0.00 0.00 0.00 2.24
4290 5611 5.642491 CCAACTAACCCAAACTAGCTCTAAC 59.358 44.000 0.00 0.00 0.00 2.34
4291 5612 5.544948 TCCAACTAACCCAAACTAGCTCTAA 59.455 40.000 0.00 0.00 0.00 2.10
4292 5613 5.088730 TCCAACTAACCCAAACTAGCTCTA 58.911 41.667 0.00 0.00 0.00 2.43
4293 5614 3.908103 TCCAACTAACCCAAACTAGCTCT 59.092 43.478 0.00 0.00 0.00 4.09
4294 5615 4.254492 CTCCAACTAACCCAAACTAGCTC 58.746 47.826 0.00 0.00 0.00 4.09
4295 5616 3.009143 CCTCCAACTAACCCAAACTAGCT 59.991 47.826 0.00 0.00 0.00 3.32
4296 5617 3.344515 CCTCCAACTAACCCAAACTAGC 58.655 50.000 0.00 0.00 0.00 3.42
4297 5618 3.009143 AGCCTCCAACTAACCCAAACTAG 59.991 47.826 0.00 0.00 0.00 2.57
4298 5619 2.983898 AGCCTCCAACTAACCCAAACTA 59.016 45.455 0.00 0.00 0.00 2.24
4299 5620 1.780919 AGCCTCCAACTAACCCAAACT 59.219 47.619 0.00 0.00 0.00 2.66
4300 5621 2.160205 GAGCCTCCAACTAACCCAAAC 58.840 52.381 0.00 0.00 0.00 2.93
4301 5622 1.777878 TGAGCCTCCAACTAACCCAAA 59.222 47.619 0.00 0.00 0.00 3.28
4302 5623 1.440618 TGAGCCTCCAACTAACCCAA 58.559 50.000 0.00 0.00 0.00 4.12
4303 5624 1.440618 TTGAGCCTCCAACTAACCCA 58.559 50.000 0.00 0.00 0.00 4.51
4304 5625 2.579410 TTTGAGCCTCCAACTAACCC 57.421 50.000 0.00 0.00 0.00 4.11
4305 5626 4.398358 GGTTATTTGAGCCTCCAACTAACC 59.602 45.833 18.48 18.48 45.88 2.85
4306 5627 4.398358 GGGTTATTTGAGCCTCCAACTAAC 59.602 45.833 12.05 12.05 39.43 2.34
4307 5628 4.043561 TGGGTTATTTGAGCCTCCAACTAA 59.956 41.667 0.00 0.00 38.04 2.24
4308 5629 3.589735 TGGGTTATTTGAGCCTCCAACTA 59.410 43.478 0.00 0.00 38.04 2.24
4309 5630 2.378547 TGGGTTATTTGAGCCTCCAACT 59.621 45.455 0.00 0.00 38.04 3.16
4310 5631 2.802719 TGGGTTATTTGAGCCTCCAAC 58.197 47.619 0.00 0.00 38.04 3.77
4311 5632 3.534357 TTGGGTTATTTGAGCCTCCAA 57.466 42.857 0.00 0.00 38.04 3.53
4312 5633 3.534357 TTTGGGTTATTTGAGCCTCCA 57.466 42.857 0.00 0.00 38.04 3.86
4313 5634 3.832490 ACTTTTGGGTTATTTGAGCCTCC 59.168 43.478 0.00 0.00 38.04 4.30
4314 5635 6.183360 GGATACTTTTGGGTTATTTGAGCCTC 60.183 42.308 0.00 0.00 38.04 4.70
4315 5636 5.656859 GGATACTTTTGGGTTATTTGAGCCT 59.343 40.000 0.00 0.00 38.04 4.58
4316 5637 5.420739 TGGATACTTTTGGGTTATTTGAGCC 59.579 40.000 0.00 0.00 35.98 4.70
4317 5638 6.524101 TGGATACTTTTGGGTTATTTGAGC 57.476 37.500 0.00 0.00 37.61 4.26
4318 5639 8.364142 TGTTTGGATACTTTTGGGTTATTTGAG 58.636 33.333 0.00 0.00 37.61 3.02
4319 5640 8.251383 TGTTTGGATACTTTTGGGTTATTTGA 57.749 30.769 0.00 0.00 37.61 2.69
4320 5641 7.602265 CCTGTTTGGATACTTTTGGGTTATTTG 59.398 37.037 0.00 0.00 38.35 2.32
4321 5642 7.256511 CCCTGTTTGGATACTTTTGGGTTATTT 60.257 37.037 0.00 0.00 38.35 1.40
4322 5643 6.212589 CCCTGTTTGGATACTTTTGGGTTATT 59.787 38.462 0.00 0.00 38.35 1.40
4323 5644 5.719563 CCCTGTTTGGATACTTTTGGGTTAT 59.280 40.000 0.00 0.00 38.35 1.89
4324 5645 5.081032 CCCTGTTTGGATACTTTTGGGTTA 58.919 41.667 0.00 0.00 38.35 2.85
4325 5646 3.901222 CCCTGTTTGGATACTTTTGGGTT 59.099 43.478 0.00 0.00 38.35 4.11
4326 5647 3.141272 TCCCTGTTTGGATACTTTTGGGT 59.859 43.478 0.00 0.00 38.35 4.51
4327 5648 3.763897 CTCCCTGTTTGGATACTTTTGGG 59.236 47.826 0.00 0.00 38.35 4.12
4328 5649 3.763897 CCTCCCTGTTTGGATACTTTTGG 59.236 47.826 0.00 0.00 38.35 3.28
4329 5650 3.763897 CCCTCCCTGTTTGGATACTTTTG 59.236 47.826 0.00 0.00 38.35 2.44
4330 5651 3.401342 ACCCTCCCTGTTTGGATACTTTT 59.599 43.478 0.00 0.00 38.35 2.27
4331 5652 2.993863 ACCCTCCCTGTTTGGATACTTT 59.006 45.455 0.00 0.00 38.35 2.66
4332 5653 2.644151 ACCCTCCCTGTTTGGATACTT 58.356 47.619 0.00 0.00 38.35 2.24
4333 5654 2.361085 ACCCTCCCTGTTTGGATACT 57.639 50.000 0.00 0.00 38.35 2.12
4334 5655 3.778629 TCTAACCCTCCCTGTTTGGATAC 59.221 47.826 0.00 0.00 38.35 2.24
4335 5656 4.037927 CTCTAACCCTCCCTGTTTGGATA 58.962 47.826 0.00 0.00 38.35 2.59
4336 5657 2.846827 CTCTAACCCTCCCTGTTTGGAT 59.153 50.000 0.00 0.00 38.35 3.41
4337 5658 2.266279 CTCTAACCCTCCCTGTTTGGA 58.734 52.381 0.00 0.00 38.35 3.53
4338 5659 1.985895 ACTCTAACCCTCCCTGTTTGG 59.014 52.381 0.00 0.00 0.00 3.28
4339 5660 3.197983 CCTACTCTAACCCTCCCTGTTTG 59.802 52.174 0.00 0.00 0.00 2.93
4340 5661 3.181398 ACCTACTCTAACCCTCCCTGTTT 60.181 47.826 0.00 0.00 0.00 2.83
4341 5662 2.386113 ACCTACTCTAACCCTCCCTGTT 59.614 50.000 0.00 0.00 0.00 3.16
4342 5663 2.009165 ACCTACTCTAACCCTCCCTGT 58.991 52.381 0.00 0.00 0.00 4.00
4343 5664 2.850695 ACCTACTCTAACCCTCCCTG 57.149 55.000 0.00 0.00 0.00 4.45
4344 5665 3.863538 ACTAACCTACTCTAACCCTCCCT 59.136 47.826 0.00 0.00 0.00 4.20
4345 5666 4.262891 ACTAACCTACTCTAACCCTCCC 57.737 50.000 0.00 0.00 0.00 4.30
4346 5667 5.718607 TGAAACTAACCTACTCTAACCCTCC 59.281 44.000 0.00 0.00 0.00 4.30
4347 5668 6.847421 TGAAACTAACCTACTCTAACCCTC 57.153 41.667 0.00 0.00 0.00 4.30
4348 5669 7.190501 AGATGAAACTAACCTACTCTAACCCT 58.809 38.462 0.00 0.00 0.00 4.34
4349 5670 7.421087 AGATGAAACTAACCTACTCTAACCC 57.579 40.000 0.00 0.00 0.00 4.11
4350 5671 9.800433 GTTAGATGAAACTAACCTACTCTAACC 57.200 37.037 0.00 0.00 43.43 2.85
4361 5682 8.890718 GGAATAGTTGGGTTAGATGAAACTAAC 58.109 37.037 0.00 0.00 46.41 2.34
4362 5683 8.607713 TGGAATAGTTGGGTTAGATGAAACTAA 58.392 33.333 0.00 0.00 37.02 2.24
4363 5684 8.153221 TGGAATAGTTGGGTTAGATGAAACTA 57.847 34.615 0.00 0.00 37.64 2.24
4364 5685 7.027874 TGGAATAGTTGGGTTAGATGAAACT 57.972 36.000 0.00 0.00 35.39 2.66
4365 5686 6.884836 ACTGGAATAGTTGGGTTAGATGAAAC 59.115 38.462 0.00 0.00 35.67 2.78
4366 5687 6.884295 CACTGGAATAGTTGGGTTAGATGAAA 59.116 38.462 0.00 0.00 37.60 2.69
4367 5688 6.414732 CACTGGAATAGTTGGGTTAGATGAA 58.585 40.000 0.00 0.00 37.60 2.57
4368 5689 5.104527 CCACTGGAATAGTTGGGTTAGATGA 60.105 44.000 0.00 0.00 37.60 2.92
4369 5690 5.104527 TCCACTGGAATAGTTGGGTTAGATG 60.105 44.000 0.00 0.00 37.60 2.90
4370 5691 5.036916 TCCACTGGAATAGTTGGGTTAGAT 58.963 41.667 0.00 0.00 37.60 1.98
4371 5692 4.431378 TCCACTGGAATAGTTGGGTTAGA 58.569 43.478 0.00 0.00 37.60 2.10
4372 5693 4.469945 TCTCCACTGGAATAGTTGGGTTAG 59.530 45.833 0.00 0.00 37.60 2.34
4373 5694 4.431378 TCTCCACTGGAATAGTTGGGTTA 58.569 43.478 0.00 0.00 37.60 2.85
4374 5695 3.256704 TCTCCACTGGAATAGTTGGGTT 58.743 45.455 0.00 0.00 37.60 4.11
4375 5696 2.840651 CTCTCCACTGGAATAGTTGGGT 59.159 50.000 0.00 0.00 37.60 4.51
4376 5697 2.171448 CCTCTCCACTGGAATAGTTGGG 59.829 54.545 0.00 0.00 37.60 4.12
4377 5698 2.840651 ACCTCTCCACTGGAATAGTTGG 59.159 50.000 0.00 0.00 37.60 3.77
4378 5699 3.866651 CACCTCTCCACTGGAATAGTTG 58.133 50.000 0.00 0.00 37.60 3.16
4379 5700 2.237392 GCACCTCTCCACTGGAATAGTT 59.763 50.000 0.00 0.00 37.60 2.24
4380 5701 1.834263 GCACCTCTCCACTGGAATAGT 59.166 52.381 0.00 0.00 41.36 2.12
4381 5702 2.114616 AGCACCTCTCCACTGGAATAG 58.885 52.381 0.00 0.03 0.00 1.73
4382 5703 2.254152 AGCACCTCTCCACTGGAATA 57.746 50.000 0.00 0.00 0.00 1.75
4383 5704 1.366319 AAGCACCTCTCCACTGGAAT 58.634 50.000 0.00 0.00 0.00 3.01
4384 5705 2.024176 TAAGCACCTCTCCACTGGAA 57.976 50.000 0.00 0.00 0.00 3.53
4385 5706 2.254152 ATAAGCACCTCTCCACTGGA 57.746 50.000 0.00 0.00 0.00 3.86
4386 5707 3.012518 CAAATAAGCACCTCTCCACTGG 58.987 50.000 0.00 0.00 0.00 4.00
4387 5708 3.012518 CCAAATAAGCACCTCTCCACTG 58.987 50.000 0.00 0.00 0.00 3.66
4388 5709 2.912956 TCCAAATAAGCACCTCTCCACT 59.087 45.455 0.00 0.00 0.00 4.00
4389 5710 3.350219 TCCAAATAAGCACCTCTCCAC 57.650 47.619 0.00 0.00 0.00 4.02
4390 5711 4.591321 AATCCAAATAAGCACCTCTCCA 57.409 40.909 0.00 0.00 0.00 3.86
4391 5712 5.930135 TCTAATCCAAATAAGCACCTCTCC 58.070 41.667 0.00 0.00 0.00 3.71
4392 5713 6.481644 CACTCTAATCCAAATAAGCACCTCTC 59.518 42.308 0.00 0.00 0.00 3.20
4393 5714 6.352516 CACTCTAATCCAAATAAGCACCTCT 58.647 40.000 0.00 0.00 0.00 3.69
4394 5715 5.529060 CCACTCTAATCCAAATAAGCACCTC 59.471 44.000 0.00 0.00 0.00 3.85
4395 5716 5.440610 CCACTCTAATCCAAATAAGCACCT 58.559 41.667 0.00 0.00 0.00 4.00
4396 5717 4.580580 CCCACTCTAATCCAAATAAGCACC 59.419 45.833 0.00 0.00 0.00 5.01
4397 5718 5.193679 ACCCACTCTAATCCAAATAAGCAC 58.806 41.667 0.00 0.00 0.00 4.40
4398 5719 5.450818 ACCCACTCTAATCCAAATAAGCA 57.549 39.130 0.00 0.00 0.00 3.91
4399 5720 7.280356 TCTAACCCACTCTAATCCAAATAAGC 58.720 38.462 0.00 0.00 0.00 3.09
4400 5721 9.681062 TTTCTAACCCACTCTAATCCAAATAAG 57.319 33.333 0.00 0.00 0.00 1.73
4405 5726 9.457436 GTTATTTTCTAACCCACTCTAATCCAA 57.543 33.333 0.00 0.00 0.00 3.53
4406 5727 8.832735 AGTTATTTTCTAACCCACTCTAATCCA 58.167 33.333 0.00 0.00 0.00 3.41
4407 5728 9.327628 GAGTTATTTTCTAACCCACTCTAATCC 57.672 37.037 0.00 0.00 0.00 3.01
4438 5759 8.185506 TGTTTGGATACTCTAACACAGTTAGA 57.814 34.615 16.22 16.22 31.46 2.10
4439 5760 7.545965 CCTGTTTGGATACTCTAACACAGTTAG 59.454 40.741 9.97 9.97 38.35 2.34
4440 5761 7.233962 TCCTGTTTGGATACTCTAACACAGTTA 59.766 37.037 0.00 0.00 40.56 2.24
4441 5762 6.042781 TCCTGTTTGGATACTCTAACACAGTT 59.957 38.462 0.00 0.00 40.56 3.16
4442 5763 5.542635 TCCTGTTTGGATACTCTAACACAGT 59.457 40.000 0.00 0.00 40.56 3.55
4443 5764 6.037786 TCCTGTTTGGATACTCTAACACAG 57.962 41.667 0.00 0.00 40.56 3.66
4454 5775 7.491791 ACATGACAACGGTCCTGTTTGGATA 62.492 44.000 0.00 0.00 46.49 2.59
4455 5776 6.805215 ACATGACAACGGTCCTGTTTGGAT 62.805 45.833 0.00 0.00 46.49 3.41
4456 5777 0.542333 TGACAACGGTCCTGTTTGGA 59.458 50.000 0.00 0.00 43.65 3.53
4457 5778 1.266718 CATGACAACGGTCCTGTTTGG 59.733 52.381 0.00 0.00 43.65 3.28
4458 5779 1.946768 ACATGACAACGGTCCTGTTTG 59.053 47.619 0.00 0.00 46.49 2.93
4459 5780 2.341846 ACATGACAACGGTCCTGTTT 57.658 45.000 0.00 0.00 46.49 2.83
4462 5783 1.270305 ACTGACATGACAACGGTCCTG 60.270 52.381 0.00 0.00 43.65 3.86
4463 5784 1.048601 ACTGACATGACAACGGTCCT 58.951 50.000 0.00 0.00 43.65 3.85
4464 5785 1.148310 CACTGACATGACAACGGTCC 58.852 55.000 0.00 0.00 43.65 4.46
4465 5786 2.148916 TCACTGACATGACAACGGTC 57.851 50.000 0.00 0.00 44.57 4.79
4466 5787 2.102420 TCTTCACTGACATGACAACGGT 59.898 45.455 0.00 0.00 0.00 4.83
4467 5788 2.476619 GTCTTCACTGACATGACAACGG 59.523 50.000 0.00 0.00 36.97 4.44
4468 5789 3.123050 TGTCTTCACTGACATGACAACG 58.877 45.455 0.00 0.00 41.43 4.10
4469 5790 4.572389 ACTTGTCTTCACTGACATGACAAC 59.428 41.667 14.47 0.00 45.03 3.32
4470 5791 4.769688 ACTTGTCTTCACTGACATGACAA 58.230 39.130 14.47 15.14 45.03 3.18
4471 5792 4.141959 TGACTTGTCTTCACTGACATGACA 60.142 41.667 14.47 12.07 45.03 3.58
4472 5793 4.371786 TGACTTGTCTTCACTGACATGAC 58.628 43.478 14.47 10.20 45.03 3.06
4473 5794 4.670896 TGACTTGTCTTCACTGACATGA 57.329 40.909 14.47 0.00 45.03 3.07
4516 5837 9.599866 GCATGGCCTAGAGTTAATTTTATTTTT 57.400 29.630 3.32 0.00 0.00 1.94
4517 5838 8.981659 AGCATGGCCTAGAGTTAATTTTATTTT 58.018 29.630 3.32 0.00 0.00 1.82
4518 5839 8.539117 AGCATGGCCTAGAGTTAATTTTATTT 57.461 30.769 3.32 0.00 0.00 1.40
4519 5840 7.041098 CGAGCATGGCCTAGAGTTAATTTTATT 60.041 37.037 3.32 0.00 0.00 1.40
4520 5841 6.428159 CGAGCATGGCCTAGAGTTAATTTTAT 59.572 38.462 3.32 0.00 0.00 1.40
4521 5842 5.758296 CGAGCATGGCCTAGAGTTAATTTTA 59.242 40.000 3.32 0.00 0.00 1.52
4522 5843 4.576463 CGAGCATGGCCTAGAGTTAATTTT 59.424 41.667 3.32 0.00 0.00 1.82
4523 5844 4.130118 CGAGCATGGCCTAGAGTTAATTT 58.870 43.478 3.32 0.00 0.00 1.82
4524 5845 3.495100 CCGAGCATGGCCTAGAGTTAATT 60.495 47.826 3.32 0.00 0.00 1.40
4525 5846 2.037772 CCGAGCATGGCCTAGAGTTAAT 59.962 50.000 3.32 0.00 0.00 1.40
4526 5847 1.412710 CCGAGCATGGCCTAGAGTTAA 59.587 52.381 3.32 0.00 0.00 2.01
4527 5848 1.040646 CCGAGCATGGCCTAGAGTTA 58.959 55.000 3.32 0.00 0.00 2.24
4528 5849 0.978146 ACCGAGCATGGCCTAGAGTT 60.978 55.000 3.32 0.00 0.00 3.01
4529 5850 0.978146 AACCGAGCATGGCCTAGAGT 60.978 55.000 3.32 0.00 0.00 3.24
4530 5851 1.000283 CTAACCGAGCATGGCCTAGAG 60.000 57.143 3.32 0.00 0.00 2.43
4531 5852 1.040646 CTAACCGAGCATGGCCTAGA 58.959 55.000 3.32 0.00 0.00 2.43
4532 5853 0.753262 ACTAACCGAGCATGGCCTAG 59.247 55.000 3.32 0.00 0.00 3.02
4533 5854 1.138266 GAACTAACCGAGCATGGCCTA 59.862 52.381 3.32 0.00 0.00 3.93
4534 5855 0.107654 GAACTAACCGAGCATGGCCT 60.108 55.000 3.32 0.00 0.00 5.19
4535 5856 0.392461 TGAACTAACCGAGCATGGCC 60.392 55.000 0.00 0.00 0.00 5.36
4536 5857 1.009829 CTGAACTAACCGAGCATGGC 58.990 55.000 0.00 0.00 0.00 4.40
4537 5858 2.672961 TCTGAACTAACCGAGCATGG 57.327 50.000 0.00 0.00 0.00 3.66
4538 5859 3.126831 GGATCTGAACTAACCGAGCATG 58.873 50.000 0.00 0.00 0.00 4.06
4539 5860 2.223829 CGGATCTGAACTAACCGAGCAT 60.224 50.000 0.00 0.00 45.31 3.79
4540 5861 1.134367 CGGATCTGAACTAACCGAGCA 59.866 52.381 0.00 0.00 45.31 4.26
4541 5862 1.134560 ACGGATCTGAACTAACCGAGC 59.865 52.381 9.00 0.00 45.31 5.03
4542 5863 3.179830 CAACGGATCTGAACTAACCGAG 58.820 50.000 9.00 0.00 45.31 4.63
4543 5864 2.673043 GCAACGGATCTGAACTAACCGA 60.673 50.000 9.00 0.00 45.31 4.69
4545 5866 2.973945 AGCAACGGATCTGAACTAACC 58.026 47.619 9.00 0.00 0.00 2.85
4566 6480 1.575419 AAACCACGACTATAGGGCCA 58.425 50.000 6.18 0.00 0.00 5.36
4617 6547 2.602676 GGGTGAGGTGGCCTAAGCA 61.603 63.158 3.32 0.00 42.56 3.91
4691 6676 0.183014 TACCCACACTGGCCGAAAAA 59.817 50.000 0.00 0.00 35.79 1.94
4692 6677 0.183014 TTACCCACACTGGCCGAAAA 59.817 50.000 0.00 0.00 35.79 2.29
4745 6730 9.113838 GGAACTGAATACACTTCATATGATGTT 57.886 33.333 18.84 13.49 31.13 2.71
4754 6739 6.595326 GTCATCATGGAACTGAATACACTTCA 59.405 38.462 0.00 0.00 0.00 3.02
4779 6764 4.940046 ACTTGGTTGCAGTAGAAGATGATG 59.060 41.667 4.44 0.00 0.00 3.07
4781 6766 4.040339 TGACTTGGTTGCAGTAGAAGATGA 59.960 41.667 4.44 0.00 0.00 2.92
4806 6791 6.873997 TGTTGTATGATCGTATGAAAGGAGT 58.126 36.000 0.00 0.00 0.00 3.85
4808 6793 7.226523 CCATTGTTGTATGATCGTATGAAAGGA 59.773 37.037 0.00 0.00 0.00 3.36
4809 6794 7.012327 ACCATTGTTGTATGATCGTATGAAAGG 59.988 37.037 0.00 0.00 0.00 3.11
4849 6834 9.466497 TTCTTCTAAAGATGAAGGCATGTTTAT 57.534 29.630 8.15 0.00 44.35 1.40
4851 6836 7.765695 TTCTTCTAAAGATGAAGGCATGTTT 57.234 32.000 0.00 0.00 46.14 2.83
4852 6837 7.765695 TTTCTTCTAAAGATGAAGGCATGTT 57.234 32.000 7.96 0.00 39.43 2.71
4869 6854 9.265901 CCGACATTGAGATATGTATTTTCTTCT 57.734 33.333 0.00 0.00 38.80 2.85
4878 6863 3.254903 CGGTCCCGACATTGAGATATGTA 59.745 47.826 0.00 0.00 38.80 2.29
4879 6864 2.035961 CGGTCCCGACATTGAGATATGT 59.964 50.000 0.00 0.00 41.30 2.29
4880 6865 2.296190 TCGGTCCCGACATTGAGATATG 59.704 50.000 3.90 0.00 44.01 1.78
4881 6866 2.594131 TCGGTCCCGACATTGAGATAT 58.406 47.619 3.90 0.00 44.01 1.63
4883 6868 2.896278 TCGGTCCCGACATTGAGAT 58.104 52.632 3.90 0.00 44.01 2.75
4893 6878 0.319900 GATGGATGACATCGGTCCCG 60.320 60.000 9.31 0.00 45.87 5.14
4910 6895 4.226427 TCTAGCTGCTTTTGACATGGAT 57.774 40.909 7.79 0.00 0.00 3.41
4916 6901 8.119226 CACATTTACTATCTAGCTGCTTTTGAC 58.881 37.037 7.79 0.00 0.00 3.18
4935 6920 4.947388 GGACAAGGAATGGCTACACATTTA 59.053 41.667 0.00 0.00 40.92 1.40
4936 6921 3.763897 GGACAAGGAATGGCTACACATTT 59.236 43.478 0.00 0.00 40.92 2.32
4937 6922 3.356290 GGACAAGGAATGGCTACACATT 58.644 45.455 0.00 0.00 43.36 2.71
4954 6939 0.260230 TTGAGGTTGGCTTTGGGACA 59.740 50.000 0.00 0.00 0.00 4.02
4955 6940 0.961753 CTTGAGGTTGGCTTTGGGAC 59.038 55.000 0.00 0.00 0.00 4.46
5004 6989 3.659786 AGTGCATAACAAGCGACTACAA 58.340 40.909 0.00 0.00 33.85 2.41
5006 6991 3.678072 TGAAGTGCATAACAAGCGACTAC 59.322 43.478 0.00 0.00 33.85 2.73
5012 6997 6.428385 ACTTATCTGAAGTGCATAACAAGC 57.572 37.500 0.00 0.00 0.00 4.01
5037 7024 6.234920 TGAAGAACCCGATGAATTTAAGACA 58.765 36.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.