Multiple sequence alignment - TraesCS2A01G392700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G392700 chr2A 100.000 3194 0 0 1 3194 642729327 642726134 0.000000e+00 5899.0
1 TraesCS2A01G392700 chr2D 89.953 2349 123 47 221 2508 498101670 498099374 0.000000e+00 2926.0
2 TraesCS2A01G392700 chr2D 92.629 502 30 5 2508 3005 323916608 323916110 0.000000e+00 715.0
3 TraesCS2A01G392700 chr2D 92.757 497 30 4 2515 3007 160680961 160681455 0.000000e+00 713.0
4 TraesCS2A01G392700 chr2D 93.438 381 24 1 1001 1381 425213967 425214346 5.980000e-157 564.0
5 TraesCS2A01G392700 chr2D 92.268 388 29 1 994 1381 627324266 627324652 1.670000e-152 549.0
6 TraesCS2A01G392700 chr2D 99.070 215 2 0 1 215 498102154 498101940 1.390000e-103 387.0
7 TraesCS2A01G392700 chr2D 97.368 38 1 0 1123 1160 620610696 620610659 7.400000e-07 65.8
8 TraesCS2A01G392700 chr2B 89.989 1818 96 34 754 2508 584475242 584473448 0.000000e+00 2270.0
9 TraesCS2A01G392700 chr2B 95.430 744 22 8 1 741 584476024 584475290 0.000000e+00 1175.0
10 TraesCS2A01G392700 chr1D 92.688 506 31 4 2504 3005 283421601 283421098 0.000000e+00 725.0
11 TraesCS2A01G392700 chr1D 92.247 503 32 5 2507 3005 448481683 448481184 0.000000e+00 706.0
12 TraesCS2A01G392700 chr1B 92.857 504 28 6 2507 3004 256912828 256912327 0.000000e+00 725.0
13 TraesCS2A01G392700 chr1B 89.796 245 25 0 1001 1245 167949637 167949881 6.650000e-82 315.0
14 TraesCS2A01G392700 chr7D 92.292 506 32 5 2504 3005 275048394 275048896 0.000000e+00 712.0
15 TraesCS2A01G392700 chr7D 92.292 506 32 5 2506 3005 418618692 418619196 0.000000e+00 712.0
16 TraesCS2A01G392700 chr7D 100.000 35 0 0 1123 1157 546767695 546767729 7.400000e-07 65.8
17 TraesCS2A01G392700 chr3B 92.079 505 32 6 2507 3006 667236334 667235833 0.000000e+00 704.0
18 TraesCS2A01G392700 chr5A 91.489 517 35 7 2496 3005 620282863 620283377 0.000000e+00 702.0
19 TraesCS2A01G392700 chr3A 97.143 35 1 0 1123 1157 56739406 56739440 3.440000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G392700 chr2A 642726134 642729327 3193 True 5899.0 5899 100.0000 1 3194 1 chr2A.!!$R1 3193
1 TraesCS2A01G392700 chr2D 498099374 498102154 2780 True 1656.5 2926 94.5115 1 2508 2 chr2D.!!$R3 2507
2 TraesCS2A01G392700 chr2B 584473448 584476024 2576 True 1722.5 2270 92.7095 1 2508 2 chr2B.!!$R1 2507
3 TraesCS2A01G392700 chr1D 283421098 283421601 503 True 725.0 725 92.6880 2504 3005 1 chr1D.!!$R1 501
4 TraesCS2A01G392700 chr1B 256912327 256912828 501 True 725.0 725 92.8570 2507 3004 1 chr1B.!!$R1 497
5 TraesCS2A01G392700 chr7D 275048394 275048896 502 False 712.0 712 92.2920 2504 3005 1 chr7D.!!$F1 501
6 TraesCS2A01G392700 chr7D 418618692 418619196 504 False 712.0 712 92.2920 2506 3005 1 chr7D.!!$F2 499
7 TraesCS2A01G392700 chr3B 667235833 667236334 501 True 704.0 704 92.0790 2507 3006 1 chr3B.!!$R1 499
8 TraesCS2A01G392700 chr5A 620282863 620283377 514 False 702.0 702 91.4890 2496 3005 1 chr5A.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 1062 0.89553 GTGACACTTCCCTCGATGGA 59.104 55.0 5.19 5.19 38.35 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2203 2555 1.081556 TATCATGTGACGTGGCGTGC 61.082 55.0 4.78 0.0 41.37 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 133 3.966930 GAGGCGGAGGTGGGAGTCT 62.967 68.421 0.00 0.00 0.00 3.24
448 713 3.058160 GCACCTTCTGCATGGCGT 61.058 61.111 0.00 0.00 46.29 5.68
495 760 2.117423 TGAGTGGAGGAGACGGCA 59.883 61.111 0.00 0.00 0.00 5.69
555 820 2.650196 GGCAAATGCGCACAAGGA 59.350 55.556 14.90 0.00 43.26 3.36
579 844 4.200283 GGCGAGGCGGACAGAGAG 62.200 72.222 0.00 0.00 0.00 3.20
580 845 3.134792 GCGAGGCGGACAGAGAGA 61.135 66.667 0.00 0.00 0.00 3.10
581 846 2.795297 CGAGGCGGACAGAGAGAC 59.205 66.667 0.00 0.00 0.00 3.36
740 1049 5.643379 AAAACATGACAGTTTGTGACACT 57.357 34.783 7.20 0.00 40.60 3.55
741 1050 5.643379 AAACATGACAGTTTGTGACACTT 57.357 34.783 7.20 0.00 40.03 3.16
742 1051 4.882671 ACATGACAGTTTGTGACACTTC 57.117 40.909 7.20 0.00 33.49 3.01
743 1052 3.627577 ACATGACAGTTTGTGACACTTCC 59.372 43.478 7.20 0.00 33.49 3.46
744 1053 2.639065 TGACAGTTTGTGACACTTCCC 58.361 47.619 7.20 0.00 0.00 3.97
745 1054 2.238646 TGACAGTTTGTGACACTTCCCT 59.761 45.455 7.20 0.00 0.00 4.20
746 1055 2.872858 GACAGTTTGTGACACTTCCCTC 59.127 50.000 7.20 0.00 0.00 4.30
747 1056 1.867233 CAGTTTGTGACACTTCCCTCG 59.133 52.381 7.20 0.00 0.00 4.63
750 1060 2.455674 TTGTGACACTTCCCTCGATG 57.544 50.000 7.20 0.00 0.00 3.84
752 1062 0.895530 GTGACACTTCCCTCGATGGA 59.104 55.000 5.19 5.19 38.35 3.41
816 1126 2.355837 GCGCGTGACCTCAACAGA 60.356 61.111 8.43 0.00 0.00 3.41
818 1128 2.365068 CGCGTGACCTCAACAGACG 61.365 63.158 0.00 0.00 0.00 4.18
819 1129 3.538841 CGTGACCTCAACAGACGC 58.461 61.111 0.00 0.00 0.00 5.19
820 1130 1.299850 CGTGACCTCAACAGACGCA 60.300 57.895 0.00 0.00 0.00 5.24
827 1162 1.005748 TCAACAGACGCAGAGCCAG 60.006 57.895 0.00 0.00 0.00 4.85
878 1213 1.793714 CGATGGCAATGGCACGTAAAC 60.794 52.381 12.83 0.00 41.84 2.01
886 1221 1.313772 TGGCACGTAAACTTGCACAT 58.686 45.000 12.82 0.00 42.15 3.21
899 1234 4.124238 ACTTGCACATACCGCGTATAAAT 58.876 39.130 4.92 0.00 0.00 1.40
958 1302 3.944871 GCAATATTTGGCAGGGTCG 57.055 52.632 0.00 0.00 0.00 4.79
1504 1849 1.129811 CCCTTCGTGCATTTTCGTACC 59.870 52.381 0.00 0.00 0.00 3.34
1512 1857 2.565391 TGCATTTTCGTACCTCCTGAGA 59.435 45.455 0.00 0.00 0.00 3.27
1515 1860 4.745620 GCATTTTCGTACCTCCTGAGATAC 59.254 45.833 0.00 0.00 0.00 2.24
1523 1868 2.766263 ACCTCCTGAGATACAAATCGCA 59.234 45.455 0.00 0.00 39.29 5.10
1528 1873 2.193447 TGAGATACAAATCGCAGTCGC 58.807 47.619 0.00 0.00 37.05 5.19
1529 1874 2.193447 GAGATACAAATCGCAGTCGCA 58.807 47.619 0.00 0.00 38.40 5.10
1530 1875 2.196749 AGATACAAATCGCAGTCGCAG 58.803 47.619 0.00 0.00 38.40 5.18
1531 1876 2.159240 AGATACAAATCGCAGTCGCAGA 60.159 45.455 0.00 0.00 38.40 4.26
1532 1877 2.073117 TACAAATCGCAGTCGCAGAA 57.927 45.000 0.00 0.00 39.69 3.02
1533 1878 1.225855 ACAAATCGCAGTCGCAGAAA 58.774 45.000 0.00 0.00 39.69 2.52
1534 1879 1.806542 ACAAATCGCAGTCGCAGAAAT 59.193 42.857 0.00 0.00 39.69 2.17
1535 1880 2.171567 CAAATCGCAGTCGCAGAAATG 58.828 47.619 0.00 0.00 39.69 2.32
1536 1881 1.442769 AATCGCAGTCGCAGAAATGT 58.557 45.000 0.00 0.00 39.69 2.71
1537 1882 1.002366 ATCGCAGTCGCAGAAATGTC 58.998 50.000 0.00 0.00 39.69 3.06
1538 1883 1.057822 CGCAGTCGCAGAAATGTCG 59.942 57.895 0.00 0.00 39.69 4.35
1539 1884 1.617755 CGCAGTCGCAGAAATGTCGT 61.618 55.000 0.00 0.00 39.69 4.34
1542 1894 0.319900 AGTCGCAGAAATGTCGTGCT 60.320 50.000 5.98 0.00 39.69 4.40
1564 1916 0.597637 CTTCTGGTCGCAGTTGACGT 60.598 55.000 0.00 0.00 39.83 4.34
1571 1923 2.935955 GCAGTTGACGTGGTTCCG 59.064 61.111 0.00 0.00 0.00 4.30
1613 1965 4.719106 GTGCTGCAGCCTGCTCCT 62.719 66.667 34.64 0.00 45.31 3.69
1708 2060 1.450312 CTCGTCCCCAACCAGATGC 60.450 63.158 0.00 0.00 0.00 3.91
1710 2062 1.746615 CGTCCCCAACCAGATGCTG 60.747 63.158 0.00 0.00 0.00 4.41
1738 2090 1.632948 GCGCTACTTCCGAAACCCAC 61.633 60.000 0.00 0.00 0.00 4.61
1766 2118 2.362369 CCAGGCGTCTCAGGTCCAT 61.362 63.158 0.00 0.00 0.00 3.41
2163 2515 4.143333 GGCGGTGCCGAGCTCTTA 62.143 66.667 15.45 0.00 39.62 2.10
2185 2537 3.470567 GTGCGACTGTTCCGAGCG 61.471 66.667 0.00 0.00 0.00 5.03
2203 2555 1.668419 CGGGAAGTGATTAAGCTGGG 58.332 55.000 0.00 0.00 0.00 4.45
2264 2629 3.908643 AAAGATACTCCCTCGGAAACC 57.091 47.619 0.00 0.00 0.00 3.27
2281 2646 4.261197 GGAAACCGATCAATCCACTTATGC 60.261 45.833 0.00 0.00 32.08 3.14
2284 2649 3.244215 ACCGATCAATCCACTTATGCGAT 60.244 43.478 0.00 0.00 0.00 4.58
2300 2665 7.773864 TTATGCGATAAGTAATTTGGAACGA 57.226 32.000 0.00 0.00 0.00 3.85
2301 2666 6.671614 ATGCGATAAGTAATTTGGAACGAA 57.328 33.333 0.00 0.00 0.00 3.85
2302 2667 6.483385 TGCGATAAGTAATTTGGAACGAAA 57.517 33.333 0.00 0.00 0.00 3.46
2303 2668 6.900189 TGCGATAAGTAATTTGGAACGAAAA 58.100 32.000 0.00 0.00 0.00 2.29
2305 2670 6.468000 GCGATAAGTAATTTGGAACGAAAAGG 59.532 38.462 0.00 0.00 0.00 3.11
2306 2671 6.964934 CGATAAGTAATTTGGAACGAAAAGGG 59.035 38.462 0.00 0.00 0.00 3.95
2312 2686 6.564709 AATTTGGAACGAAAAGGGTACTAC 57.435 37.500 0.00 0.00 0.00 2.73
2319 2693 4.768583 ACGAAAAGGGTACTACAACAACA 58.231 39.130 0.00 0.00 0.00 3.33
2336 2711 7.406553 ACAACAACATAAATAATGGATCGACG 58.593 34.615 0.00 0.00 40.16 5.12
2343 2718 7.602644 ACATAAATAATGGATCGACGTATTGCT 59.397 33.333 0.00 0.00 40.16 3.91
2344 2719 6.467723 AAATAATGGATCGACGTATTGCTC 57.532 37.500 0.00 0.00 0.00 4.26
2364 2746 5.357596 TGCTCATGAAACTATAGCAATGCAA 59.642 36.000 8.35 0.00 40.05 4.08
2365 2747 6.127675 TGCTCATGAAACTATAGCAATGCAAA 60.128 34.615 8.35 0.00 40.05 3.68
2412 2794 9.872684 ATTCCAACTAAGAATGTGATATTCCAT 57.127 29.630 0.00 0.00 32.74 3.41
2453 2835 4.850386 AGAGAACCCTGTAGTTTAACCCAT 59.150 41.667 0.00 0.00 0.00 4.00
2454 2836 6.027482 AGAGAACCCTGTAGTTTAACCCATA 58.973 40.000 0.00 0.00 0.00 2.74
2455 2837 6.058553 AGAACCCTGTAGTTTAACCCATAC 57.941 41.667 0.00 0.00 0.00 2.39
2456 2838 5.789054 AGAACCCTGTAGTTTAACCCATACT 59.211 40.000 0.00 0.00 0.00 2.12
2457 2839 5.688814 ACCCTGTAGTTTAACCCATACTC 57.311 43.478 0.00 0.00 0.00 2.59
2458 2840 5.095809 ACCCTGTAGTTTAACCCATACTCA 58.904 41.667 0.00 0.00 0.00 3.41
2459 2841 5.729718 ACCCTGTAGTTTAACCCATACTCAT 59.270 40.000 0.00 0.00 0.00 2.90
2460 2842 6.904654 ACCCTGTAGTTTAACCCATACTCATA 59.095 38.462 0.00 0.00 0.00 2.15
2461 2843 7.070821 ACCCTGTAGTTTAACCCATACTCATAG 59.929 40.741 0.00 0.00 0.00 2.23
2547 2933 3.537580 ACGAGTTGGTAATGTTGTGTGT 58.462 40.909 0.00 0.00 0.00 3.72
2565 2951 5.585844 TGTGTGTCTGCCATCTTGTAATATG 59.414 40.000 0.00 0.00 0.00 1.78
2589 2978 6.174760 GGACCGTATCTATATCTCACAGACT 58.825 44.000 0.00 0.00 0.00 3.24
2635 3025 1.867363 AAGATACCCGCACCTCTCTT 58.133 50.000 0.00 0.00 0.00 2.85
2646 3036 3.745975 CGCACCTCTCTTCACATTTACAA 59.254 43.478 0.00 0.00 0.00 2.41
2794 3185 2.802724 CCGACCACCAGTCACCACA 61.803 63.158 0.00 0.00 46.69 4.17
2805 3196 2.518349 CACCACAACGCCCCACTT 60.518 61.111 0.00 0.00 0.00 3.16
2824 3215 4.036262 CACTTCTCCTCACCTTATCTCTCG 59.964 50.000 0.00 0.00 0.00 4.04
2933 3325 1.215423 GGGATTACTCCTGCATGGGTT 59.785 52.381 0.00 0.00 41.74 4.11
3006 3399 1.742411 GCACGGGCATCTTGCTAGTAA 60.742 52.381 3.77 0.00 44.28 2.24
3007 3400 2.838736 CACGGGCATCTTGCTAGTAAT 58.161 47.619 0.00 0.00 44.28 1.89
3008 3401 3.802329 GCACGGGCATCTTGCTAGTAATA 60.802 47.826 3.77 0.00 44.28 0.98
3009 3402 4.377021 CACGGGCATCTTGCTAGTAATAA 58.623 43.478 0.00 0.00 44.28 1.40
3010 3403 4.211374 CACGGGCATCTTGCTAGTAATAAC 59.789 45.833 0.00 0.00 44.28 1.89
3011 3404 4.101119 ACGGGCATCTTGCTAGTAATAACT 59.899 41.667 0.00 0.00 44.28 2.24
3012 3405 4.686554 CGGGCATCTTGCTAGTAATAACTC 59.313 45.833 0.00 0.00 44.28 3.01
3013 3406 4.998033 GGGCATCTTGCTAGTAATAACTCC 59.002 45.833 0.00 0.00 44.28 3.85
3014 3407 5.221742 GGGCATCTTGCTAGTAATAACTCCT 60.222 44.000 0.00 0.00 44.28 3.69
3015 3408 6.014499 GGGCATCTTGCTAGTAATAACTCCTA 60.014 42.308 0.00 0.00 44.28 2.94
3016 3409 7.310734 GGGCATCTTGCTAGTAATAACTCCTAT 60.311 40.741 0.00 0.00 44.28 2.57
3017 3410 8.750298 GGCATCTTGCTAGTAATAACTCCTATA 58.250 37.037 0.00 0.00 44.28 1.31
3043 3436 8.955061 ACAAAGATTTACGATGATGTTTCTTG 57.045 30.769 0.00 0.00 0.00 3.02
3044 3437 8.783093 ACAAAGATTTACGATGATGTTTCTTGA 58.217 29.630 0.00 0.00 0.00 3.02
3045 3438 9.611284 CAAAGATTTACGATGATGTTTCTTGAA 57.389 29.630 0.00 0.00 0.00 2.69
3046 3439 9.831737 AAAGATTTACGATGATGTTTCTTGAAG 57.168 29.630 0.00 0.00 0.00 3.02
3047 3440 8.777865 AGATTTACGATGATGTTTCTTGAAGA 57.222 30.769 0.00 0.00 0.00 2.87
3048 3441 8.660373 AGATTTACGATGATGTTTCTTGAAGAC 58.340 33.333 0.00 0.00 0.00 3.01
3049 3442 7.722795 TTTACGATGATGTTTCTTGAAGACA 57.277 32.000 0.00 0.00 0.00 3.41
3050 3443 7.905604 TTACGATGATGTTTCTTGAAGACAT 57.094 32.000 0.00 0.00 36.76 3.06
3051 3444 6.414408 ACGATGATGTTTCTTGAAGACATC 57.586 37.500 15.98 15.98 46.11 3.06
3052 3445 6.169094 ACGATGATGTTTCTTGAAGACATCT 58.831 36.000 20.66 11.09 46.09 2.90
3053 3446 6.652481 ACGATGATGTTTCTTGAAGACATCTT 59.348 34.615 20.66 16.54 46.09 2.40
3069 3462 9.213799 GAAGACATCTTCTCCATGGTATAAATC 57.786 37.037 12.58 1.92 46.59 2.17
3070 3463 8.503428 AGACATCTTCTCCATGGTATAAATCT 57.497 34.615 12.58 4.20 0.00 2.40
3071 3464 8.592809 AGACATCTTCTCCATGGTATAAATCTC 58.407 37.037 12.58 0.16 0.00 2.75
3072 3465 8.503428 ACATCTTCTCCATGGTATAAATCTCT 57.497 34.615 12.58 0.00 0.00 3.10
3073 3466 8.592809 ACATCTTCTCCATGGTATAAATCTCTC 58.407 37.037 12.58 0.00 0.00 3.20
3074 3467 8.591940 CATCTTCTCCATGGTATAAATCTCTCA 58.408 37.037 12.58 0.00 0.00 3.27
3075 3468 8.553085 TCTTCTCCATGGTATAAATCTCTCAA 57.447 34.615 12.58 0.00 0.00 3.02
3076 3469 8.646004 TCTTCTCCATGGTATAAATCTCTCAAG 58.354 37.037 12.58 0.00 0.00 3.02
3077 3470 8.553085 TTCTCCATGGTATAAATCTCTCAAGA 57.447 34.615 12.58 0.00 35.54 3.02
3078 3471 7.957002 TCTCCATGGTATAAATCTCTCAAGAC 58.043 38.462 12.58 0.00 33.32 3.01
3079 3472 6.749139 TCCATGGTATAAATCTCTCAAGACG 58.251 40.000 12.58 0.00 33.32 4.18
3080 3473 6.549736 TCCATGGTATAAATCTCTCAAGACGA 59.450 38.462 12.58 0.00 33.32 4.20
3081 3474 7.069455 TCCATGGTATAAATCTCTCAAGACGAA 59.931 37.037 12.58 0.00 33.32 3.85
3082 3475 7.710907 CCATGGTATAAATCTCTCAAGACGAAA 59.289 37.037 2.57 0.00 33.32 3.46
3083 3476 9.265901 CATGGTATAAATCTCTCAAGACGAAAT 57.734 33.333 0.00 0.00 33.32 2.17
3085 3478 9.745880 TGGTATAAATCTCTCAAGACGAAATAC 57.254 33.333 0.00 0.00 33.32 1.89
3086 3479 9.968870 GGTATAAATCTCTCAAGACGAAATACT 57.031 33.333 0.00 0.00 33.32 2.12
3119 3512 9.908152 ACTTTAGTAAAATGCAACAATTAGACC 57.092 29.630 0.00 0.00 0.00 3.85
3120 3513 8.958175 TTTAGTAAAATGCAACAATTAGACCG 57.042 30.769 0.00 0.00 0.00 4.79
3121 3514 6.811253 AGTAAAATGCAACAATTAGACCGA 57.189 33.333 0.00 0.00 0.00 4.69
3122 3515 7.209471 AGTAAAATGCAACAATTAGACCGAA 57.791 32.000 0.00 0.00 0.00 4.30
3123 3516 7.305474 AGTAAAATGCAACAATTAGACCGAAG 58.695 34.615 0.00 0.00 0.00 3.79
3124 3517 5.705609 AAATGCAACAATTAGACCGAAGT 57.294 34.783 0.00 0.00 0.00 3.01
3125 3518 4.685169 ATGCAACAATTAGACCGAAGTG 57.315 40.909 0.00 0.00 0.00 3.16
3126 3519 3.734463 TGCAACAATTAGACCGAAGTGA 58.266 40.909 0.00 0.00 0.00 3.41
3127 3520 3.496884 TGCAACAATTAGACCGAAGTGAC 59.503 43.478 0.00 0.00 0.00 3.67
3128 3521 3.423123 GCAACAATTAGACCGAAGTGACG 60.423 47.826 0.00 0.00 0.00 4.35
3129 3522 3.928727 ACAATTAGACCGAAGTGACGA 57.071 42.857 0.00 0.00 35.09 4.20
3130 3523 4.451629 ACAATTAGACCGAAGTGACGAT 57.548 40.909 0.00 0.00 35.09 3.73
3131 3524 5.571784 ACAATTAGACCGAAGTGACGATA 57.428 39.130 0.00 0.00 35.09 2.92
3132 3525 6.145338 ACAATTAGACCGAAGTGACGATAT 57.855 37.500 0.00 0.00 35.09 1.63
3133 3526 5.977725 ACAATTAGACCGAAGTGACGATATG 59.022 40.000 0.00 0.00 35.09 1.78
3134 3527 4.563337 TTAGACCGAAGTGACGATATGG 57.437 45.455 0.00 0.00 35.09 2.74
3135 3528 1.067212 AGACCGAAGTGACGATATGGC 59.933 52.381 0.00 0.00 35.09 4.40
3136 3529 0.104304 ACCGAAGTGACGATATGGCC 59.896 55.000 0.00 0.00 35.09 5.36
3137 3530 0.104120 CCGAAGTGACGATATGGCCA 59.896 55.000 8.56 8.56 35.09 5.36
3138 3531 1.209128 CGAAGTGACGATATGGCCAC 58.791 55.000 8.16 0.00 35.09 5.01
3139 3532 1.583054 GAAGTGACGATATGGCCACC 58.417 55.000 8.16 0.00 0.00 4.61
3140 3533 0.180406 AAGTGACGATATGGCCACCC 59.820 55.000 8.16 0.00 0.00 4.61
3141 3534 0.691078 AGTGACGATATGGCCACCCT 60.691 55.000 8.16 0.00 0.00 4.34
3142 3535 0.249911 GTGACGATATGGCCACCCTC 60.250 60.000 8.16 4.00 0.00 4.30
3143 3536 0.398522 TGACGATATGGCCACCCTCT 60.399 55.000 8.16 0.00 0.00 3.69
3144 3537 0.318762 GACGATATGGCCACCCTCTC 59.681 60.000 8.16 0.00 0.00 3.20
3145 3538 0.398522 ACGATATGGCCACCCTCTCA 60.399 55.000 8.16 0.00 0.00 3.27
3146 3539 0.758734 CGATATGGCCACCCTCTCAA 59.241 55.000 8.16 0.00 0.00 3.02
3147 3540 1.349026 CGATATGGCCACCCTCTCAAT 59.651 52.381 8.16 0.00 0.00 2.57
3148 3541 2.613977 CGATATGGCCACCCTCTCAATC 60.614 54.545 8.16 0.47 0.00 2.67
3149 3542 1.140312 TATGGCCACCCTCTCAATCC 58.860 55.000 8.16 0.00 0.00 3.01
3150 3543 1.649271 ATGGCCACCCTCTCAATCCC 61.649 60.000 8.16 0.00 0.00 3.85
3151 3544 2.597903 GCCACCCTCTCAATCCCC 59.402 66.667 0.00 0.00 0.00 4.81
3152 3545 3.061905 GCCACCCTCTCAATCCCCC 62.062 68.421 0.00 0.00 0.00 5.40
3166 3559 3.741325 CCCCCTCCCGAACTTGAT 58.259 61.111 0.00 0.00 0.00 2.57
3167 3560 1.999346 CCCCCTCCCGAACTTGATT 59.001 57.895 0.00 0.00 0.00 2.57
3168 3561 1.209621 CCCCCTCCCGAACTTGATTA 58.790 55.000 0.00 0.00 0.00 1.75
3169 3562 1.134189 CCCCCTCCCGAACTTGATTAC 60.134 57.143 0.00 0.00 0.00 1.89
3170 3563 1.838077 CCCCTCCCGAACTTGATTACT 59.162 52.381 0.00 0.00 0.00 2.24
3171 3564 3.036091 CCCCTCCCGAACTTGATTACTA 58.964 50.000 0.00 0.00 0.00 1.82
3172 3565 3.453353 CCCCTCCCGAACTTGATTACTAA 59.547 47.826 0.00 0.00 0.00 2.24
3173 3566 4.102681 CCCCTCCCGAACTTGATTACTAAT 59.897 45.833 0.00 0.00 0.00 1.73
3174 3567 5.306160 CCCCTCCCGAACTTGATTACTAATA 59.694 44.000 0.00 0.00 0.00 0.98
3175 3568 6.183361 CCCCTCCCGAACTTGATTACTAATAA 60.183 42.308 0.00 0.00 0.00 1.40
3176 3569 7.277396 CCCTCCCGAACTTGATTACTAATAAA 58.723 38.462 0.00 0.00 0.00 1.40
3177 3570 7.441458 CCCTCCCGAACTTGATTACTAATAAAG 59.559 40.741 4.78 4.78 35.75 1.85
3178 3571 7.041984 CCTCCCGAACTTGATTACTAATAAAGC 60.042 40.741 5.96 0.00 33.33 3.51
3179 3572 7.562135 TCCCGAACTTGATTACTAATAAAGCT 58.438 34.615 5.96 0.00 33.33 3.74
3180 3573 8.044908 TCCCGAACTTGATTACTAATAAAGCTT 58.955 33.333 5.96 0.00 33.33 3.74
3181 3574 8.674607 CCCGAACTTGATTACTAATAAAGCTTT 58.325 33.333 17.30 17.30 33.33 3.51
3192 3585 7.228314 ACTAATAAAGCTTTTTGAAGGACCC 57.772 36.000 18.47 0.00 0.00 4.46
3193 3586 5.483685 AATAAAGCTTTTTGAAGGACCCC 57.516 39.130 18.47 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
495 760 2.683933 CACCCTACCTCGCCCACT 60.684 66.667 0.00 0.00 0.00 4.00
579 844 2.052157 CGTGTTGTCTCTTCTTCCGTC 58.948 52.381 0.00 0.00 0.00 4.79
580 845 1.679680 TCGTGTTGTCTCTTCTTCCGT 59.320 47.619 0.00 0.00 0.00 4.69
581 846 2.287668 ACTCGTGTTGTCTCTTCTTCCG 60.288 50.000 0.00 0.00 0.00 4.30
629 903 1.078426 CCCAGTCCAGGCTAAACCG 60.078 63.158 0.00 0.00 46.52 4.44
723 998 3.117888 AGGGAAGTGTCACAAACTGTCAT 60.118 43.478 5.62 0.00 0.00 3.06
737 1046 2.234908 ACTTTCTCCATCGAGGGAAGTG 59.765 50.000 20.80 8.90 39.41 3.16
738 1047 2.498078 GACTTTCTCCATCGAGGGAAGT 59.502 50.000 20.80 19.82 41.49 3.01
739 1048 2.159028 GGACTTTCTCCATCGAGGGAAG 60.159 54.545 20.80 16.67 39.21 3.46
740 1049 1.831736 GGACTTTCTCCATCGAGGGAA 59.168 52.381 20.80 8.48 39.21 3.97
741 1050 1.486211 GGACTTTCTCCATCGAGGGA 58.514 55.000 19.23 19.23 39.21 4.20
742 1051 0.103208 CGGACTTTCTCCATCGAGGG 59.897 60.000 10.57 10.57 39.39 4.30
743 1052 1.103803 TCGGACTTTCTCCATCGAGG 58.896 55.000 0.00 0.00 39.39 4.63
744 1053 2.924290 GTTTCGGACTTTCTCCATCGAG 59.076 50.000 0.00 0.00 39.39 4.04
745 1054 2.297880 TGTTTCGGACTTTCTCCATCGA 59.702 45.455 0.00 0.00 39.39 3.59
746 1055 2.412089 GTGTTTCGGACTTTCTCCATCG 59.588 50.000 0.00 0.00 39.39 3.84
747 1056 3.665190 AGTGTTTCGGACTTTCTCCATC 58.335 45.455 0.00 0.00 39.39 3.51
750 1060 2.994578 GCTAGTGTTTCGGACTTTCTCC 59.005 50.000 0.00 0.00 35.33 3.71
752 1062 3.612004 CGAGCTAGTGTTTCGGACTTTCT 60.612 47.826 0.00 0.00 0.00 2.52
765 1075 2.995939 TGCTGTTGAAATCGAGCTAGTG 59.004 45.455 0.00 0.00 32.41 2.74
816 1126 1.160137 GTTTGATTCTGGCTCTGCGT 58.840 50.000 0.00 0.00 0.00 5.24
818 1128 1.129437 GTCGTTTGATTCTGGCTCTGC 59.871 52.381 0.00 0.00 0.00 4.26
819 1129 2.670414 GAGTCGTTTGATTCTGGCTCTG 59.330 50.000 0.00 0.00 0.00 3.35
820 1130 2.672478 CGAGTCGTTTGATTCTGGCTCT 60.672 50.000 3.82 0.00 0.00 4.09
827 1162 6.467047 TCGTAGTATTTCGAGTCGTTTGATTC 59.533 38.462 13.12 1.45 0.00 2.52
878 1213 4.725556 ATTTATACGCGGTATGTGCAAG 57.274 40.909 12.47 0.00 30.79 4.01
886 1221 2.158928 AGTGCCCAATTTATACGCGGTA 60.159 45.455 12.47 0.00 0.00 4.02
1343 1687 2.430244 CGGTCAAGGTCGTGTCCG 60.430 66.667 7.86 7.86 42.28 4.79
1482 1826 1.241315 ACGAAAATGCACGAAGGGGG 61.241 55.000 1.06 0.00 0.00 5.40
1504 1849 4.047822 GACTGCGATTTGTATCTCAGGAG 58.952 47.826 9.23 0.00 44.30 3.69
1523 1868 0.319900 AGCACGACATTTCTGCGACT 60.320 50.000 0.00 0.00 33.55 4.18
1524 1869 0.512952 AAGCACGACATTTCTGCGAC 59.487 50.000 0.00 0.00 33.55 5.19
1525 1870 0.512518 CAAGCACGACATTTCTGCGA 59.487 50.000 0.00 0.00 33.55 5.10
1526 1871 1.061799 GCAAGCACGACATTTCTGCG 61.062 55.000 0.00 0.00 33.55 5.18
1527 1872 0.239347 AGCAAGCACGACATTTCTGC 59.761 50.000 0.00 0.00 0.00 4.26
1528 1873 2.225019 AGAAGCAAGCACGACATTTCTG 59.775 45.455 0.00 0.00 0.00 3.02
1529 1874 2.225019 CAGAAGCAAGCACGACATTTCT 59.775 45.455 0.00 0.00 0.00 2.52
1530 1875 2.578495 CAGAAGCAAGCACGACATTTC 58.422 47.619 0.00 0.00 0.00 2.17
1531 1876 1.267806 CCAGAAGCAAGCACGACATTT 59.732 47.619 0.00 0.00 0.00 2.32
1532 1877 0.877071 CCAGAAGCAAGCACGACATT 59.123 50.000 0.00 0.00 0.00 2.71
1533 1878 0.250467 ACCAGAAGCAAGCACGACAT 60.250 50.000 0.00 0.00 0.00 3.06
1534 1879 0.880278 GACCAGAAGCAAGCACGACA 60.880 55.000 0.00 0.00 0.00 4.35
1535 1880 1.862806 GACCAGAAGCAAGCACGAC 59.137 57.895 0.00 0.00 0.00 4.34
1536 1881 1.664649 CGACCAGAAGCAAGCACGA 60.665 57.895 0.00 0.00 0.00 4.35
1537 1882 2.856032 CGACCAGAAGCAAGCACG 59.144 61.111 0.00 0.00 0.00 5.34
1538 1883 2.180131 CTGCGACCAGAAGCAAGCAC 62.180 60.000 0.00 0.00 43.31 4.40
1539 1884 1.962822 CTGCGACCAGAAGCAAGCA 60.963 57.895 0.00 0.00 43.31 3.91
1542 1894 0.179059 TCAACTGCGACCAGAAGCAA 60.179 50.000 0.00 0.00 43.31 3.91
1749 2101 1.142748 GATGGACCTGAGACGCCTG 59.857 63.158 0.00 0.00 0.00 4.85
2147 2499 1.491505 GATTAAGAGCTCGGCACCGC 61.492 60.000 8.37 0.00 39.59 5.68
2151 2503 1.740380 GCACTGATTAAGAGCTCGGCA 60.740 52.381 8.37 2.71 39.23 5.69
2185 2537 1.340991 TGCCCAGCTTAATCACTTCCC 60.341 52.381 0.00 0.00 0.00 3.97
2203 2555 1.081556 TATCATGTGACGTGGCGTGC 61.082 55.000 4.78 0.00 41.37 5.34
2258 2610 4.261197 GCATAAGTGGATTGATCGGTTTCC 60.261 45.833 0.00 0.00 0.00 3.13
2263 2628 2.754472 TCGCATAAGTGGATTGATCGG 58.246 47.619 0.00 0.00 0.00 4.18
2264 2629 6.087518 CTTATCGCATAAGTGGATTGATCG 57.912 41.667 7.40 0.00 37.91 3.69
2275 2640 7.847487 TCGTTCCAAATTACTTATCGCATAAG 58.153 34.615 11.86 11.86 45.97 1.73
2278 2643 6.671614 TTCGTTCCAAATTACTTATCGCAT 57.328 33.333 0.00 0.00 0.00 4.73
2281 2646 6.964934 CCCTTTTCGTTCCAAATTACTTATCG 59.035 38.462 0.00 0.00 0.00 2.92
2284 2649 7.938490 AGTACCCTTTTCGTTCCAAATTACTTA 59.062 33.333 0.00 0.00 0.00 2.24
2296 2661 5.184711 TGTTGTTGTAGTACCCTTTTCGTT 58.815 37.500 0.00 0.00 0.00 3.85
2297 2662 4.768583 TGTTGTTGTAGTACCCTTTTCGT 58.231 39.130 0.00 0.00 0.00 3.85
2298 2663 5.934935 ATGTTGTTGTAGTACCCTTTTCG 57.065 39.130 0.00 0.00 0.00 3.46
2303 2668 9.403583 CCATTATTTATGTTGTTGTAGTACCCT 57.596 33.333 0.00 0.00 31.99 4.34
2312 2686 7.406553 ACGTCGATCCATTATTTATGTTGTTG 58.593 34.615 0.00 0.00 31.99 3.33
2319 2693 7.817478 TGAGCAATACGTCGATCCATTATTTAT 59.183 33.333 0.00 0.00 0.00 1.40
2343 2718 9.902196 CATATTTGCATTGCTATAGTTTCATGA 57.098 29.630 10.49 0.00 0.00 3.07
2344 2719 9.902196 TCATATTTGCATTGCTATAGTTTCATG 57.098 29.630 10.49 3.93 0.00 3.07
2376 2758 9.927081 ACATTCTTAGTTGGAATTCCATAAGAT 57.073 29.630 32.22 24.08 46.97 2.40
2397 2779 9.976511 ACATTGATTTGATGGAATATCACATTC 57.023 29.630 0.00 0.00 0.00 2.67
2424 2806 9.293404 GGTTAAACTACAGGGTTCTCTAAAAAT 57.707 33.333 0.00 0.00 0.00 1.82
2429 2811 5.405279 TGGGTTAAACTACAGGGTTCTCTA 58.595 41.667 0.00 0.00 0.00 2.43
2439 2821 6.384595 TGGCTATGAGTATGGGTTAAACTACA 59.615 38.462 0.00 0.00 0.00 2.74
2453 2835 6.072119 CGATGTACCTGTAATGGCTATGAGTA 60.072 42.308 0.00 0.00 0.00 2.59
2454 2836 5.279006 CGATGTACCTGTAATGGCTATGAGT 60.279 44.000 0.00 0.00 0.00 3.41
2455 2837 5.164233 CGATGTACCTGTAATGGCTATGAG 58.836 45.833 0.00 0.00 0.00 2.90
2456 2838 4.560716 GCGATGTACCTGTAATGGCTATGA 60.561 45.833 0.00 0.00 0.00 2.15
2457 2839 3.679980 GCGATGTACCTGTAATGGCTATG 59.320 47.826 0.00 0.00 0.00 2.23
2458 2840 3.323691 TGCGATGTACCTGTAATGGCTAT 59.676 43.478 0.00 0.00 0.00 2.97
2459 2841 2.696187 TGCGATGTACCTGTAATGGCTA 59.304 45.455 0.00 0.00 0.00 3.93
2460 2842 1.484653 TGCGATGTACCTGTAATGGCT 59.515 47.619 0.00 0.00 0.00 4.75
2461 2843 1.948104 TGCGATGTACCTGTAATGGC 58.052 50.000 0.00 0.00 0.00 4.40
2536 2921 2.867624 AGATGGCAGACACACAACATT 58.132 42.857 0.00 0.00 0.00 2.71
2547 2933 4.503123 CGGTCCATATTACAAGATGGCAGA 60.503 45.833 10.18 0.00 45.20 4.26
2565 2951 6.092944 CAGTCTGTGAGATATAGATACGGTCC 59.907 46.154 0.00 0.00 0.00 4.46
2585 2974 7.516198 AATTGTCATAGTTTGCTTTCAGTCT 57.484 32.000 0.00 0.00 0.00 3.24
2635 3025 5.337169 GGCAAGGCCTTATTTGTAAATGTGA 60.337 40.000 20.00 0.00 46.69 3.58
2794 3185 1.841556 TGAGGAGAAGTGGGGCGTT 60.842 57.895 0.00 0.00 0.00 4.84
2805 3196 3.456644 AGACGAGAGATAAGGTGAGGAGA 59.543 47.826 0.00 0.00 0.00 3.71
2905 3297 3.134623 TGCAGGAGTAATCCCATGTGTAG 59.865 47.826 5.39 0.00 0.00 2.74
3017 3410 9.398170 CAAGAAACATCATCGTAAATCTTTGTT 57.602 29.630 0.00 0.00 0.00 2.83
3018 3411 8.783093 TCAAGAAACATCATCGTAAATCTTTGT 58.217 29.630 0.00 0.00 0.00 2.83
3019 3412 9.611284 TTCAAGAAACATCATCGTAAATCTTTG 57.389 29.630 0.00 0.00 0.00 2.77
3020 3413 9.831737 CTTCAAGAAACATCATCGTAAATCTTT 57.168 29.630 0.00 0.00 0.00 2.52
3021 3414 9.219603 TCTTCAAGAAACATCATCGTAAATCTT 57.780 29.630 0.00 0.00 0.00 2.40
3022 3415 8.660373 GTCTTCAAGAAACATCATCGTAAATCT 58.340 33.333 0.00 0.00 0.00 2.40
3023 3416 8.443160 TGTCTTCAAGAAACATCATCGTAAATC 58.557 33.333 0.00 0.00 0.00 2.17
3024 3417 8.322906 TGTCTTCAAGAAACATCATCGTAAAT 57.677 30.769 0.00 0.00 0.00 1.40
3025 3418 7.722795 TGTCTTCAAGAAACATCATCGTAAA 57.277 32.000 0.00 0.00 0.00 2.01
3026 3419 7.905604 ATGTCTTCAAGAAACATCATCGTAA 57.094 32.000 0.00 0.00 0.00 3.18
3027 3420 7.525688 GATGTCTTCAAGAAACATCATCGTA 57.474 36.000 20.51 0.00 45.48 3.43
3028 3421 6.414408 GATGTCTTCAAGAAACATCATCGT 57.586 37.500 20.51 0.00 45.48 3.73
3044 3437 8.943085 AGATTTATACCATGGAGAAGATGTCTT 58.057 33.333 21.47 0.00 36.41 3.01
3045 3438 8.503428 AGATTTATACCATGGAGAAGATGTCT 57.497 34.615 21.47 8.87 40.25 3.41
3046 3439 8.592809 AGAGATTTATACCATGGAGAAGATGTC 58.407 37.037 21.47 13.64 0.00 3.06
3047 3440 8.503428 AGAGATTTATACCATGGAGAAGATGT 57.497 34.615 21.47 5.18 0.00 3.06
3048 3441 8.591940 TGAGAGATTTATACCATGGAGAAGATG 58.408 37.037 21.47 0.00 0.00 2.90
3049 3442 8.733092 TGAGAGATTTATACCATGGAGAAGAT 57.267 34.615 21.47 6.57 0.00 2.40
3050 3443 8.553085 TTGAGAGATTTATACCATGGAGAAGA 57.447 34.615 21.47 1.21 0.00 2.87
3051 3444 8.646004 TCTTGAGAGATTTATACCATGGAGAAG 58.354 37.037 21.47 0.00 0.00 2.85
3052 3445 8.424918 GTCTTGAGAGATTTATACCATGGAGAA 58.575 37.037 21.47 6.18 33.70 2.87
3053 3446 7.255625 CGTCTTGAGAGATTTATACCATGGAGA 60.256 40.741 21.47 6.11 33.70 3.71
3054 3447 6.865726 CGTCTTGAGAGATTTATACCATGGAG 59.134 42.308 21.47 0.00 33.70 3.86
3055 3448 6.549736 TCGTCTTGAGAGATTTATACCATGGA 59.450 38.462 21.47 2.01 33.70 3.41
3056 3449 6.749139 TCGTCTTGAGAGATTTATACCATGG 58.251 40.000 11.19 11.19 33.70 3.66
3057 3450 8.648557 TTTCGTCTTGAGAGATTTATACCATG 57.351 34.615 0.00 0.00 33.70 3.66
3059 3452 9.745880 GTATTTCGTCTTGAGAGATTTATACCA 57.254 33.333 0.00 0.00 33.70 3.25
3060 3453 9.968870 AGTATTTCGTCTTGAGAGATTTATACC 57.031 33.333 0.00 0.00 33.70 2.73
3093 3486 9.908152 GGTCTAATTGTTGCATTTTACTAAAGT 57.092 29.630 0.00 0.00 0.00 2.66
3094 3487 9.061610 CGGTCTAATTGTTGCATTTTACTAAAG 57.938 33.333 0.00 0.00 0.00 1.85
3095 3488 8.784994 TCGGTCTAATTGTTGCATTTTACTAAA 58.215 29.630 0.00 0.00 0.00 1.85
3096 3489 8.325421 TCGGTCTAATTGTTGCATTTTACTAA 57.675 30.769 0.00 0.00 0.00 2.24
3097 3490 7.908827 TCGGTCTAATTGTTGCATTTTACTA 57.091 32.000 0.00 0.00 0.00 1.82
3098 3491 6.811253 TCGGTCTAATTGTTGCATTTTACT 57.189 33.333 0.00 0.00 0.00 2.24
3099 3492 7.060633 CACTTCGGTCTAATTGTTGCATTTTAC 59.939 37.037 0.00 0.00 0.00 2.01
3100 3493 7.041030 TCACTTCGGTCTAATTGTTGCATTTTA 60.041 33.333 0.00 0.00 0.00 1.52
3101 3494 5.920273 CACTTCGGTCTAATTGTTGCATTTT 59.080 36.000 0.00 0.00 0.00 1.82
3102 3495 5.240623 TCACTTCGGTCTAATTGTTGCATTT 59.759 36.000 0.00 0.00 0.00 2.32
3103 3496 4.759693 TCACTTCGGTCTAATTGTTGCATT 59.240 37.500 0.00 0.00 0.00 3.56
3104 3497 4.154195 GTCACTTCGGTCTAATTGTTGCAT 59.846 41.667 0.00 0.00 0.00 3.96
3105 3498 3.496884 GTCACTTCGGTCTAATTGTTGCA 59.503 43.478 0.00 0.00 0.00 4.08
3106 3499 3.423123 CGTCACTTCGGTCTAATTGTTGC 60.423 47.826 0.00 0.00 0.00 4.17
3107 3500 3.985279 TCGTCACTTCGGTCTAATTGTTG 59.015 43.478 0.00 0.00 0.00 3.33
3108 3501 4.247267 TCGTCACTTCGGTCTAATTGTT 57.753 40.909 0.00 0.00 0.00 2.83
3109 3502 3.928727 TCGTCACTTCGGTCTAATTGT 57.071 42.857 0.00 0.00 0.00 2.71
3110 3503 5.402568 CCATATCGTCACTTCGGTCTAATTG 59.597 44.000 0.00 0.00 0.00 2.32
3111 3504 5.529791 CCATATCGTCACTTCGGTCTAATT 58.470 41.667 0.00 0.00 0.00 1.40
3112 3505 4.558898 GCCATATCGTCACTTCGGTCTAAT 60.559 45.833 0.00 0.00 0.00 1.73
3113 3506 3.243301 GCCATATCGTCACTTCGGTCTAA 60.243 47.826 0.00 0.00 0.00 2.10
3114 3507 2.292569 GCCATATCGTCACTTCGGTCTA 59.707 50.000 0.00 0.00 0.00 2.59
3115 3508 1.067212 GCCATATCGTCACTTCGGTCT 59.933 52.381 0.00 0.00 0.00 3.85
3116 3509 1.488527 GCCATATCGTCACTTCGGTC 58.511 55.000 0.00 0.00 0.00 4.79
3117 3510 0.104304 GGCCATATCGTCACTTCGGT 59.896 55.000 0.00 0.00 0.00 4.69
3118 3511 0.104120 TGGCCATATCGTCACTTCGG 59.896 55.000 0.00 0.00 0.00 4.30
3119 3512 1.209128 GTGGCCATATCGTCACTTCG 58.791 55.000 9.72 0.00 0.00 3.79
3120 3513 1.583054 GGTGGCCATATCGTCACTTC 58.417 55.000 9.72 0.00 0.00 3.01
3121 3514 0.180406 GGGTGGCCATATCGTCACTT 59.820 55.000 9.72 0.00 0.00 3.16
3122 3515 0.691078 AGGGTGGCCATATCGTCACT 60.691 55.000 9.72 0.00 0.00 3.41
3123 3516 0.249911 GAGGGTGGCCATATCGTCAC 60.250 60.000 9.72 0.00 0.00 3.67
3124 3517 0.398522 AGAGGGTGGCCATATCGTCA 60.399 55.000 9.72 0.00 0.00 4.35
3125 3518 0.318762 GAGAGGGTGGCCATATCGTC 59.681 60.000 9.72 12.99 0.00 4.20
3126 3519 0.398522 TGAGAGGGTGGCCATATCGT 60.399 55.000 9.72 3.40 27.23 3.73
3127 3520 0.758734 TTGAGAGGGTGGCCATATCG 59.241 55.000 9.72 0.00 27.23 2.92
3128 3521 2.290577 GGATTGAGAGGGTGGCCATATC 60.291 54.545 9.72 7.79 0.00 1.63
3129 3522 1.707427 GGATTGAGAGGGTGGCCATAT 59.293 52.381 9.72 0.00 0.00 1.78
3130 3523 1.140312 GGATTGAGAGGGTGGCCATA 58.860 55.000 9.72 0.00 0.00 2.74
3131 3524 1.649271 GGGATTGAGAGGGTGGCCAT 61.649 60.000 9.72 0.00 0.00 4.40
3132 3525 2.308722 GGGATTGAGAGGGTGGCCA 61.309 63.158 0.00 0.00 0.00 5.36
3133 3526 2.597903 GGGATTGAGAGGGTGGCC 59.402 66.667 0.00 0.00 0.00 5.36
3134 3527 2.597903 GGGGATTGAGAGGGTGGC 59.402 66.667 0.00 0.00 0.00 5.01
3135 3528 3.335711 GGGGGATTGAGAGGGTGG 58.664 66.667 0.00 0.00 0.00 4.61
3149 3542 1.134189 GTAATCAAGTTCGGGAGGGGG 60.134 57.143 0.00 0.00 0.00 5.40
3150 3543 1.838077 AGTAATCAAGTTCGGGAGGGG 59.162 52.381 0.00 0.00 0.00 4.79
3151 3544 4.748277 TTAGTAATCAAGTTCGGGAGGG 57.252 45.455 0.00 0.00 0.00 4.30
3152 3545 7.041984 GCTTTATTAGTAATCAAGTTCGGGAGG 60.042 40.741 15.11 0.00 0.00 4.30
3153 3546 7.711339 AGCTTTATTAGTAATCAAGTTCGGGAG 59.289 37.037 15.11 0.00 0.00 4.30
3154 3547 7.562135 AGCTTTATTAGTAATCAAGTTCGGGA 58.438 34.615 15.11 0.00 0.00 5.14
3155 3548 7.787725 AGCTTTATTAGTAATCAAGTTCGGG 57.212 36.000 15.11 0.00 0.00 5.14
3166 3559 8.799367 GGGTCCTTCAAAAAGCTTTATTAGTAA 58.201 33.333 13.10 1.23 0.00 2.24
3167 3560 7.395206 GGGGTCCTTCAAAAAGCTTTATTAGTA 59.605 37.037 13.10 0.00 0.00 1.82
3168 3561 6.210784 GGGGTCCTTCAAAAAGCTTTATTAGT 59.789 38.462 13.10 0.00 0.00 2.24
3169 3562 6.631016 GGGGTCCTTCAAAAAGCTTTATTAG 58.369 40.000 13.10 7.70 0.00 1.73
3170 3563 6.599356 GGGGTCCTTCAAAAAGCTTTATTA 57.401 37.500 13.10 0.00 0.00 0.98
3171 3564 5.483685 GGGGTCCTTCAAAAAGCTTTATT 57.516 39.130 13.10 6.47 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.