Multiple sequence alignment - TraesCS2A01G390900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G390900 chr2A 100.000 5571 0 0 815 6385 640684889 640690459 0.000000e+00 10288.0
1 TraesCS2A01G390900 chr2A 100.000 390 0 0 1 390 640684075 640684464 0.000000e+00 721.0
2 TraesCS2A01G390900 chr2A 86.902 397 30 12 3691 4082 640686914 640687293 5.920000e-115 425.0
3 TraesCS2A01G390900 chr2A 86.902 397 30 12 2840 3219 640687765 640688156 5.920000e-115 425.0
4 TraesCS2A01G390900 chr2A 91.288 264 17 2 127 390 437629617 437629874 7.870000e-94 355.0
5 TraesCS2A01G390900 chr2A 87.597 129 12 4 4 130 531153250 531153124 5.160000e-31 147.0
6 TraesCS2A01G390900 chr2B 98.424 3110 34 7 3278 6385 580007865 580004769 0.000000e+00 5457.0
7 TraesCS2A01G390900 chr2B 97.045 2504 30 5 819 3284 580021016 580018519 0.000000e+00 4174.0
8 TraesCS2A01G390900 chr2B 82.338 787 68 30 3707 4447 580018949 580018188 9.100000e-173 617.0
9 TraesCS2A01G390900 chr2B 87.927 381 26 10 2854 3219 580007436 580007061 1.270000e-116 431.0
10 TraesCS2A01G390900 chr2B 91.603 262 16 2 129 390 76234362 76234617 2.190000e-94 357.0
11 TraesCS2A01G390900 chr2B 91.406 128 1 1 1 128 580021185 580021068 3.960000e-37 167.0
12 TraesCS2A01G390900 chr5A 78.295 774 133 21 1053 1816 504932773 504932025 3.490000e-127 466.0
13 TraesCS2A01G390900 chr5A 91.255 263 17 4 128 390 438851419 438851163 2.830000e-93 353.0
14 TraesCS2A01G390900 chr5B 74.268 1263 245 50 1053 2281 479713973 479712757 5.830000e-125 459.0
15 TraesCS2A01G390900 chr4A 91.667 264 16 2 127 390 201806779 201806522 1.690000e-95 361.0
16 TraesCS2A01G390900 chr3A 91.954 261 15 4 130 390 312039207 312039461 1.690000e-95 361.0
17 TraesCS2A01G390900 chr3B 91.603 262 16 2 129 390 561374374 561374629 2.190000e-94 357.0
18 TraesCS2A01G390900 chr6A 91.288 264 17 4 127 390 562065700 562065443 7.870000e-94 355.0
19 TraesCS2A01G390900 chr1B 91.571 261 16 2 130 390 3245508 3245254 7.870000e-94 355.0
20 TraesCS2A01G390900 chr1B 96.667 180 6 0 5922 6101 672563359 672563180 3.740000e-77 300.0
21 TraesCS2A01G390900 chr1A 91.255 263 17 4 128 390 398249969 398249713 2.830000e-93 353.0
22 TraesCS2A01G390900 chrUn 96.667 180 6 0 5922 6101 206789430 206789609 3.740000e-77 300.0
23 TraesCS2A01G390900 chrUn 96.175 183 7 0 5922 6104 353900049 353899867 3.740000e-77 300.0
24 TraesCS2A01G390900 chr7D 96.667 180 6 0 5922 6101 203490782 203490961 3.740000e-77 300.0
25 TraesCS2A01G390900 chr7D 96.667 180 6 0 5922 6101 381910759 381910938 3.740000e-77 300.0
26 TraesCS2A01G390900 chr7D 79.688 128 19 7 7 128 30302948 30303074 1.140000e-12 86.1
27 TraesCS2A01G390900 chr7D 85.185 54 8 0 1664 1717 122960161 122960214 8.940000e-04 56.5
28 TraesCS2A01G390900 chr6D 96.667 180 6 0 5922 6101 124508306 124508485 3.740000e-77 300.0
29 TraesCS2A01G390900 chr4D 96.667 180 6 0 5922 6101 123326255 123326434 3.740000e-77 300.0
30 TraesCS2A01G390900 chr4B 96.667 180 6 0 5922 6101 209290621 209290800 3.740000e-77 300.0
31 TraesCS2A01G390900 chr4B 82.051 117 10 11 7 117 664912291 664912402 8.820000e-14 89.8
32 TraesCS2A01G390900 chr7B 80.153 131 18 5 5 130 737905970 737906097 2.450000e-14 91.6
33 TraesCS2A01G390900 chr7B 80.153 131 16 7 5 130 737180297 737180422 8.820000e-14 89.8
34 TraesCS2A01G390900 chr7B 79.845 129 20 4 5 130 738639808 738639683 8.820000e-14 89.8
35 TraesCS2A01G390900 chr7B 79.389 131 17 8 5 130 737481137 737481262 4.100000e-12 84.2
36 TraesCS2A01G390900 chr7A 81.982 111 14 6 7 115 183945593 183945699 8.820000e-14 89.8
37 TraesCS2A01G390900 chr7A 81.707 82 13 2 1637 1717 157965996 157966076 4.130000e-07 67.6
38 TraesCS2A01G390900 chr7A 81.707 82 13 2 1637 1717 157974225 157974305 4.130000e-07 67.6
39 TraesCS2A01G390900 chr7A 81.481 81 13 2 1637 1716 157957790 157957869 1.490000e-06 65.8
40 TraesCS2A01G390900 chr7A 87.037 54 7 0 1664 1717 125925965 125926018 1.920000e-05 62.1
41 TraesCS2A01G390900 chr7A 91.111 45 4 0 1673 1717 126095069 126095025 1.920000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G390900 chr2A 640684075 640690459 6384 False 2964.750000 10288 93.4510 1 6385 4 chr2A.!!$F2 6384
1 TraesCS2A01G390900 chr2B 580004769 580007865 3096 True 2944.000000 5457 93.1755 2854 6385 2 chr2B.!!$R1 3531
2 TraesCS2A01G390900 chr2B 580018188 580021185 2997 True 1652.666667 4174 90.2630 1 4447 3 chr2B.!!$R2 4446
3 TraesCS2A01G390900 chr5A 504932025 504932773 748 True 466.000000 466 78.2950 1053 1816 1 chr5A.!!$R2 763
4 TraesCS2A01G390900 chr5B 479712757 479713973 1216 True 459.000000 459 74.2680 1053 2281 1 chr5B.!!$R1 1228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 982 0.318441 TGAAGCTCCAGTCTTGTCCG 59.682 55.0 0.00 0.00 0.00 4.79 F
1575 1597 0.322816 TGAATGTGAAGGAGCTGCCC 60.323 55.0 0.00 0.00 37.37 5.36 F
3332 3394 0.037605 GCCCCATACGTATTCCTCGG 60.038 60.0 5.03 3.59 0.00 4.63 F
3444 3506 0.031515 TCCATGTGTATCCCCGTCCT 60.032 55.0 0.00 0.00 0.00 3.85 F
3445 3507 0.106708 CCATGTGTATCCCCGTCCTG 59.893 60.0 0.00 0.00 0.00 3.86 F
3446 3508 0.106708 CATGTGTATCCCCGTCCTGG 59.893 60.0 0.00 0.00 37.55 4.45 F
3657 3719 0.110486 AATTGGAGCACCGGTCAAGT 59.890 50.0 2.59 1.76 39.42 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2073 1.155042 CAAGACTTCCTCTGCAGCAC 58.845 55.000 9.47 0.0 0.00 4.40 R
3425 3487 0.031515 AGGACGGGGATACACATGGA 60.032 55.000 0.00 0.0 44.36 3.41 R
4759 4843 0.250770 AAGAAGTTTCCCGCTCCACC 60.251 55.000 0.00 0.0 0.00 4.61 R
4809 4894 4.142902 GGATTTGGTGTGTCAGACGTATTG 60.143 45.833 0.00 0.0 0.00 1.90 R
5194 5279 4.274950 AGAACAATAAGACAACAACACCCG 59.725 41.667 0.00 0.0 0.00 5.28 R
5243 5328 6.037610 CACTAGAAGCAATAATTCTCGCCTTT 59.962 38.462 0.00 0.0 38.05 3.11 R
5626 5711 7.858382 CACGGACATACAACTCACAAAATAAAA 59.142 33.333 0.00 0.0 0.00 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.938906 AGTAAACAGAAAACGTAGAAAAGAACA 58.061 29.630 0.00 0.00 0.00 3.18
47 48 9.207042 GTAAACAGAAAACGTAGAAAAGAACAG 57.793 33.333 0.00 0.00 0.00 3.16
49 50 7.605410 ACAGAAAACGTAGAAAAGAACAGAA 57.395 32.000 0.00 0.00 0.00 3.02
128 129 1.594310 GCTTCCCTCTGTCTCGCTT 59.406 57.895 0.00 0.00 0.00 4.68
130 131 1.202359 GCTTCCCTCTGTCTCGCTTAG 60.202 57.143 0.00 0.00 0.00 2.18
131 132 1.407258 CTTCCCTCTGTCTCGCTTAGG 59.593 57.143 0.00 0.00 0.00 2.69
132 133 1.038130 TCCCTCTGTCTCGCTTAGGC 61.038 60.000 0.00 0.00 0.00 3.93
134 135 1.681538 CCTCTGTCTCGCTTAGGCTA 58.318 55.000 0.00 0.00 36.09 3.93
135 136 1.606668 CCTCTGTCTCGCTTAGGCTAG 59.393 57.143 0.00 0.00 36.09 3.42
136 137 2.294074 CTCTGTCTCGCTTAGGCTAGT 58.706 52.381 0.00 0.00 33.65 2.57
137 138 2.289547 CTCTGTCTCGCTTAGGCTAGTC 59.710 54.545 0.00 0.00 33.65 2.59
138 139 1.003331 CTGTCTCGCTTAGGCTAGTCG 60.003 57.143 10.10 10.10 33.65 4.18
140 141 2.208431 GTCTCGCTTAGGCTAGTCGTA 58.792 52.381 14.23 5.02 33.65 3.43
144 145 2.292569 TCGCTTAGGCTAGTCGTAATGG 59.707 50.000 14.23 0.00 36.09 3.16
145 146 2.034305 CGCTTAGGCTAGTCGTAATGGT 59.966 50.000 8.67 0.00 36.09 3.55
149 150 5.471456 GCTTAGGCTAGTCGTAATGGTAGTA 59.529 44.000 0.00 0.00 35.22 1.82
150 151 6.150809 GCTTAGGCTAGTCGTAATGGTAGTAT 59.849 42.308 0.00 0.00 35.22 2.12
151 152 7.626028 GCTTAGGCTAGTCGTAATGGTAGTATC 60.626 44.444 0.00 0.00 35.22 2.24
152 153 5.628130 AGGCTAGTCGTAATGGTAGTATCA 58.372 41.667 0.00 0.00 0.00 2.15
153 154 6.246919 AGGCTAGTCGTAATGGTAGTATCAT 58.753 40.000 0.00 0.00 0.00 2.45
154 155 7.400439 AGGCTAGTCGTAATGGTAGTATCATA 58.600 38.462 0.00 0.00 0.00 2.15
157 158 8.728833 GCTAGTCGTAATGGTAGTATCATAGTT 58.271 37.037 0.00 0.00 0.00 2.24
160 161 9.790344 AGTCGTAATGGTAGTATCATAGTTAGT 57.210 33.333 0.00 0.00 0.00 2.24
168 169 9.528489 TGGTAGTATCATAGTTAGTATCATGCA 57.472 33.333 0.00 0.00 0.00 3.96
175 176 8.593492 TCATAGTTAGTATCATGCATGTCAAC 57.407 34.615 25.43 19.94 0.00 3.18
176 177 8.424133 TCATAGTTAGTATCATGCATGTCAACT 58.576 33.333 25.43 24.67 0.00 3.16
179 180 8.654230 AGTTAGTATCATGCATGTCAACTAAG 57.346 34.615 29.86 9.11 33.08 2.18
180 181 5.998454 AGTATCATGCATGTCAACTAAGC 57.002 39.130 25.43 7.61 0.00 3.09
181 182 5.430886 AGTATCATGCATGTCAACTAAGCA 58.569 37.500 25.43 3.20 39.79 3.91
182 183 5.882000 AGTATCATGCATGTCAACTAAGCAA 59.118 36.000 25.43 2.66 38.85 3.91
183 184 5.847111 ATCATGCATGTCAACTAAGCAAT 57.153 34.783 25.43 5.02 38.85 3.56
184 185 5.648178 TCATGCATGTCAACTAAGCAATT 57.352 34.783 25.43 0.00 38.85 2.32
185 186 6.028146 TCATGCATGTCAACTAAGCAATTT 57.972 33.333 25.43 0.00 38.85 1.82
186 187 6.457355 TCATGCATGTCAACTAAGCAATTTT 58.543 32.000 25.43 0.00 38.85 1.82
187 188 6.366604 TCATGCATGTCAACTAAGCAATTTTG 59.633 34.615 25.43 0.00 38.85 2.44
188 189 5.840715 TGCATGTCAACTAAGCAATTTTGA 58.159 33.333 0.00 0.00 31.42 2.69
190 191 6.366604 TGCATGTCAACTAAGCAATTTTGATG 59.633 34.615 0.00 0.00 30.96 3.07
191 192 6.587226 GCATGTCAACTAAGCAATTTTGATGA 59.413 34.615 0.00 0.00 30.96 2.92
193 194 6.680810 TGTCAACTAAGCAATTTTGATGAGG 58.319 36.000 0.00 0.00 29.13 3.86
194 195 6.265196 TGTCAACTAAGCAATTTTGATGAGGT 59.735 34.615 0.00 0.00 29.13 3.85
195 196 6.583806 GTCAACTAAGCAATTTTGATGAGGTG 59.416 38.462 4.83 4.83 42.77 4.00
196 197 6.265196 TCAACTAAGCAATTTTGATGAGGTGT 59.735 34.615 10.06 0.00 42.19 4.16
197 198 6.259550 ACTAAGCAATTTTGATGAGGTGTC 57.740 37.500 0.00 0.00 29.13 3.67
200 201 6.839124 AAGCAATTTTGATGAGGTGTCATA 57.161 33.333 0.00 0.00 43.92 2.15
201 202 6.839124 AGCAATTTTGATGAGGTGTCATAA 57.161 33.333 0.00 0.00 43.92 1.90
202 203 6.624423 AGCAATTTTGATGAGGTGTCATAAC 58.376 36.000 0.00 0.00 43.92 1.89
247 248 9.933240 TGATGGAGTATCATAGAGTATCATGAT 57.067 33.333 13.81 13.81 40.82 2.45
286 287 6.851222 ATGCTATACTACTTTGTGTCATGC 57.149 37.500 0.00 0.00 0.00 4.06
287 288 5.729510 TGCTATACTACTTTGTGTCATGCA 58.270 37.500 0.00 0.00 0.00 3.96
288 289 6.348498 TGCTATACTACTTTGTGTCATGCAT 58.652 36.000 0.00 0.00 0.00 3.96
289 290 6.258507 TGCTATACTACTTTGTGTCATGCATG 59.741 38.462 21.07 21.07 0.00 4.06
290 291 6.479990 GCTATACTACTTTGTGTCATGCATGA 59.520 38.462 25.42 25.42 0.00 3.07
931 944 2.770048 CTCCTTCGGCCCCCAGAT 60.770 66.667 0.00 0.00 0.00 2.90
932 945 3.089874 TCCTTCGGCCCCCAGATG 61.090 66.667 0.00 0.00 0.00 2.90
933 946 3.089874 CCTTCGGCCCCCAGATGA 61.090 66.667 0.00 0.00 0.00 2.92
934 947 2.507944 CTTCGGCCCCCAGATGAG 59.492 66.667 0.00 0.00 0.00 2.90
935 948 2.285368 TTCGGCCCCCAGATGAGT 60.285 61.111 0.00 0.00 0.00 3.41
965 978 3.415212 TCCAATTGAAGCTCCAGTCTTG 58.585 45.455 7.12 0.00 0.00 3.02
969 982 0.318441 TGAAGCTCCAGTCTTGTCCG 59.682 55.000 0.00 0.00 0.00 4.79
1549 1571 0.833287 GACCTCCAAGCTGCTGGATA 59.167 55.000 17.24 1.11 44.59 2.59
1575 1597 0.322816 TGAATGTGAAGGAGCTGCCC 60.323 55.000 0.00 0.00 37.37 5.36
1618 1640 0.460811 TCTCGCATCGCAGATGCTTT 60.461 50.000 28.17 0.00 45.12 3.51
1806 1837 2.092968 TGACTGCTGCCCCTACTATTTG 60.093 50.000 0.00 0.00 0.00 2.32
1861 1892 7.493971 GCACTATCAAGTATGTCAAGATGAACT 59.506 37.037 0.00 0.00 33.48 3.01
1978 2012 6.465948 ACTGAGATTGATATTCCTGCTGATC 58.534 40.000 0.00 0.00 0.00 2.92
2039 2073 2.045926 CGCCAACAAGGAGGGGAG 60.046 66.667 0.00 0.00 41.22 4.30
2189 2226 4.662468 TCTCTGTTGATCTCAGTATGCC 57.338 45.455 14.62 0.00 34.76 4.40
2472 2532 3.464907 CAGATCCACATCCAGTAAGCAG 58.535 50.000 0.00 0.00 0.00 4.24
2563 2625 3.118261 TGTCCATTGCTCTAGGATTGTCC 60.118 47.826 0.00 0.00 36.58 4.02
2696 2758 3.057526 GCTTCTTGCGTTAGTTGGGAAAT 60.058 43.478 0.00 0.00 0.00 2.17
2752 2814 2.758089 GCTGCAGTGAATCCAGCCG 61.758 63.158 16.64 0.00 44.60 5.52
2910 2972 8.627208 AAATCCGATATTGAACTGCAGATAAT 57.373 30.769 23.35 18.13 0.00 1.28
2990 3052 3.790789 GCAACAAAACTGTTACGTCCTGG 60.791 47.826 0.00 0.00 0.00 4.45
3283 3345 9.710900 CACTAGTTATGGATGCTATTATCAACA 57.289 33.333 0.00 0.00 0.00 3.33
3284 3346 9.935241 ACTAGTTATGGATGCTATTATCAACAG 57.065 33.333 0.00 0.00 0.00 3.16
3285 3347 7.678947 AGTTATGGATGCTATTATCAACAGC 57.321 36.000 0.00 0.00 35.82 4.40
3294 3356 6.798482 TGCTATTATCAACAGCAATGAAAGG 58.202 36.000 0.00 0.00 42.09 3.11
3295 3357 5.689068 GCTATTATCAACAGCAATGAAAGGC 59.311 40.000 0.00 0.00 35.35 4.35
3296 3358 4.454728 TTATCAACAGCAATGAAAGGCC 57.545 40.909 0.00 0.00 0.00 5.19
3297 3359 1.999648 TCAACAGCAATGAAAGGCCT 58.000 45.000 0.00 0.00 0.00 5.19
3298 3360 1.614903 TCAACAGCAATGAAAGGCCTG 59.385 47.619 5.69 0.00 0.00 4.85
3299 3361 1.614903 CAACAGCAATGAAAGGCCTGA 59.385 47.619 5.69 0.00 0.00 3.86
3300 3362 2.226962 ACAGCAATGAAAGGCCTGAT 57.773 45.000 5.69 0.00 0.00 2.90
3301 3363 2.097825 ACAGCAATGAAAGGCCTGATC 58.902 47.619 5.69 9.20 0.00 2.92
3302 3364 2.097036 CAGCAATGAAAGGCCTGATCA 58.903 47.619 20.43 20.43 0.00 2.92
3303 3365 2.494471 CAGCAATGAAAGGCCTGATCAA 59.506 45.455 21.62 8.81 0.00 2.57
3304 3366 2.758979 AGCAATGAAAGGCCTGATCAAG 59.241 45.455 21.62 17.90 0.00 3.02
3305 3367 2.494870 GCAATGAAAGGCCTGATCAAGT 59.505 45.455 21.62 12.22 0.00 3.16
3306 3368 3.428589 GCAATGAAAGGCCTGATCAAGTC 60.429 47.826 21.62 11.63 0.00 3.01
3307 3369 2.099141 TGAAAGGCCTGATCAAGTCG 57.901 50.000 16.96 0.00 0.00 4.18
3308 3370 1.347707 TGAAAGGCCTGATCAAGTCGT 59.652 47.619 16.96 0.00 0.00 4.34
3309 3371 2.565391 TGAAAGGCCTGATCAAGTCGTA 59.435 45.455 16.96 0.00 0.00 3.43
3310 3372 3.007506 TGAAAGGCCTGATCAAGTCGTAA 59.992 43.478 16.96 0.00 0.00 3.18
3311 3373 2.674796 AGGCCTGATCAAGTCGTAAC 57.325 50.000 3.11 0.00 0.00 2.50
3312 3374 1.899814 AGGCCTGATCAAGTCGTAACA 59.100 47.619 3.11 0.00 0.00 2.41
3313 3375 2.093973 AGGCCTGATCAAGTCGTAACAG 60.094 50.000 3.11 0.00 0.00 3.16
3314 3376 1.661112 GCCTGATCAAGTCGTAACAGC 59.339 52.381 0.00 0.00 0.00 4.40
3315 3377 2.271800 CCTGATCAAGTCGTAACAGCC 58.728 52.381 0.00 0.00 0.00 4.85
3316 3378 2.271800 CTGATCAAGTCGTAACAGCCC 58.728 52.381 0.00 0.00 0.00 5.19
3317 3379 1.066430 TGATCAAGTCGTAACAGCCCC 60.066 52.381 0.00 0.00 0.00 5.80
3318 3380 0.981183 ATCAAGTCGTAACAGCCCCA 59.019 50.000 0.00 0.00 0.00 4.96
3319 3381 0.981183 TCAAGTCGTAACAGCCCCAT 59.019 50.000 0.00 0.00 0.00 4.00
3320 3382 2.181125 TCAAGTCGTAACAGCCCCATA 58.819 47.619 0.00 0.00 0.00 2.74
3321 3383 2.093869 TCAAGTCGTAACAGCCCCATAC 60.094 50.000 0.00 0.00 0.00 2.39
3322 3384 0.458669 AGTCGTAACAGCCCCATACG 59.541 55.000 0.00 0.00 42.70 3.06
3323 3385 0.174162 GTCGTAACAGCCCCATACGT 59.826 55.000 0.00 0.00 42.15 3.57
3324 3386 1.405105 GTCGTAACAGCCCCATACGTA 59.595 52.381 0.00 0.00 42.15 3.57
3325 3387 2.035066 GTCGTAACAGCCCCATACGTAT 59.965 50.000 1.14 1.14 42.15 3.06
3326 3388 2.694628 TCGTAACAGCCCCATACGTATT 59.305 45.455 5.03 0.00 42.15 1.89
3327 3389 3.054878 CGTAACAGCCCCATACGTATTC 58.945 50.000 5.03 0.00 38.03 1.75
3328 3390 2.632987 AACAGCCCCATACGTATTCC 57.367 50.000 5.03 0.00 0.00 3.01
3329 3391 1.802553 ACAGCCCCATACGTATTCCT 58.197 50.000 5.03 0.00 0.00 3.36
3330 3392 1.692519 ACAGCCCCATACGTATTCCTC 59.307 52.381 5.03 0.00 0.00 3.71
3331 3393 0.966920 AGCCCCATACGTATTCCTCG 59.033 55.000 5.03 0.00 0.00 4.63
3332 3394 0.037605 GCCCCATACGTATTCCTCGG 60.038 60.000 5.03 3.59 0.00 4.63
3333 3395 0.606604 CCCCATACGTATTCCTCGGG 59.393 60.000 17.24 17.24 0.00 5.14
3334 3396 1.335145 CCCATACGTATTCCTCGGGT 58.665 55.000 16.33 0.00 0.00 5.28
3335 3397 2.517959 CCCATACGTATTCCTCGGGTA 58.482 52.381 16.33 0.00 0.00 3.69
3336 3398 3.094572 CCCATACGTATTCCTCGGGTAT 58.905 50.000 16.33 0.00 0.00 2.73
3337 3399 4.272489 CCCATACGTATTCCTCGGGTATA 58.728 47.826 16.33 0.00 0.00 1.47
3338 3400 4.096984 CCCATACGTATTCCTCGGGTATAC 59.903 50.000 16.33 0.00 34.18 1.47
3339 3401 4.096984 CCATACGTATTCCTCGGGTATACC 59.903 50.000 13.99 13.99 34.05 2.73
3350 3412 3.374506 GGTATACCCTGCGTGTTCC 57.625 57.895 11.17 0.00 0.00 3.62
3351 3413 0.538118 GGTATACCCTGCGTGTTCCA 59.462 55.000 11.17 0.00 0.00 3.53
3352 3414 1.472728 GGTATACCCTGCGTGTTCCAG 60.473 57.143 11.17 0.00 0.00 3.86
3353 3415 0.177141 TATACCCTGCGTGTTCCAGC 59.823 55.000 0.00 0.00 0.00 4.85
3354 3416 1.553690 ATACCCTGCGTGTTCCAGCT 61.554 55.000 0.00 0.00 0.00 4.24
3355 3417 2.449031 TACCCTGCGTGTTCCAGCTG 62.449 60.000 6.78 6.78 0.00 4.24
3356 3418 2.281070 CCTGCGTGTTCCAGCTGT 60.281 61.111 13.81 0.00 0.00 4.40
3357 3419 1.005037 CCTGCGTGTTCCAGCTGTA 60.005 57.895 13.81 0.00 0.00 2.74
3358 3420 0.391661 CCTGCGTGTTCCAGCTGTAT 60.392 55.000 13.81 0.00 0.00 2.29
3359 3421 1.442769 CTGCGTGTTCCAGCTGTATT 58.557 50.000 13.81 0.00 0.00 1.89
3360 3422 1.394917 CTGCGTGTTCCAGCTGTATTC 59.605 52.381 13.81 0.87 0.00 1.75
3361 3423 1.001974 TGCGTGTTCCAGCTGTATTCT 59.998 47.619 13.81 0.00 0.00 2.40
3362 3424 1.394917 GCGTGTTCCAGCTGTATTCTG 59.605 52.381 13.81 0.00 0.00 3.02
3363 3425 2.930887 GCGTGTTCCAGCTGTATTCTGA 60.931 50.000 13.81 0.00 33.54 3.27
3364 3426 3.525537 CGTGTTCCAGCTGTATTCTGAT 58.474 45.455 13.81 0.00 33.54 2.90
3365 3427 3.935203 CGTGTTCCAGCTGTATTCTGATT 59.065 43.478 13.81 0.00 33.54 2.57
3366 3428 4.393062 CGTGTTCCAGCTGTATTCTGATTT 59.607 41.667 13.81 0.00 33.54 2.17
3367 3429 5.106555 CGTGTTCCAGCTGTATTCTGATTTT 60.107 40.000 13.81 0.00 33.54 1.82
3368 3430 6.568462 CGTGTTCCAGCTGTATTCTGATTTTT 60.568 38.462 13.81 0.00 33.54 1.94
3402 3464 9.861138 TTTTAATTCGAAAATTGTGATGCTTTG 57.139 25.926 0.00 0.00 35.84 2.77
3403 3465 6.470557 AATTCGAAAATTGTGATGCTTTGG 57.529 33.333 0.00 0.00 33.78 3.28
3404 3466 3.911868 TCGAAAATTGTGATGCTTTGGG 58.088 40.909 0.00 0.00 0.00 4.12
3405 3467 3.571828 TCGAAAATTGTGATGCTTTGGGA 59.428 39.130 0.00 0.00 0.00 4.37
3406 3468 4.220382 TCGAAAATTGTGATGCTTTGGGAT 59.780 37.500 0.00 0.00 0.00 3.85
3407 3469 5.417266 TCGAAAATTGTGATGCTTTGGGATA 59.583 36.000 0.00 0.00 0.00 2.59
3408 3470 5.516339 CGAAAATTGTGATGCTTTGGGATAC 59.484 40.000 0.00 0.00 0.00 2.24
3409 3471 4.637483 AATTGTGATGCTTTGGGATACG 57.363 40.909 0.00 0.00 37.60 3.06
3410 3472 2.779755 TGTGATGCTTTGGGATACGT 57.220 45.000 0.00 0.00 37.60 3.57
3411 3473 2.355197 TGTGATGCTTTGGGATACGTG 58.645 47.619 0.00 0.00 37.60 4.49
3412 3474 2.290008 TGTGATGCTTTGGGATACGTGT 60.290 45.455 0.00 0.00 37.60 4.49
3413 3475 3.055747 TGTGATGCTTTGGGATACGTGTA 60.056 43.478 0.00 0.00 37.60 2.90
3414 3476 4.127171 GTGATGCTTTGGGATACGTGTAT 58.873 43.478 0.00 0.00 37.60 2.29
3415 3477 4.211374 GTGATGCTTTGGGATACGTGTATC 59.789 45.833 10.83 10.83 40.83 2.24
3427 3489 3.190337 GTGTATCCCACGCGTATCC 57.810 57.895 13.44 0.00 33.61 2.59
3428 3490 0.386476 GTGTATCCCACGCGTATCCA 59.614 55.000 13.44 0.00 33.61 3.41
3429 3491 1.000506 GTGTATCCCACGCGTATCCAT 59.999 52.381 13.44 4.31 33.61 3.41
3430 3492 1.000394 TGTATCCCACGCGTATCCATG 60.000 52.381 13.44 0.00 0.00 3.66
3431 3493 1.000506 GTATCCCACGCGTATCCATGT 59.999 52.381 13.44 0.00 0.00 3.21
3432 3494 0.249868 ATCCCACGCGTATCCATGTG 60.250 55.000 13.44 0.00 0.00 3.21
3433 3495 1.153449 CCCACGCGTATCCATGTGT 60.153 57.895 13.44 0.00 34.70 3.72
3434 3496 0.103390 CCCACGCGTATCCATGTGTA 59.897 55.000 13.44 0.00 33.08 2.90
3435 3497 1.270094 CCCACGCGTATCCATGTGTAT 60.270 52.381 13.44 0.00 33.08 2.29
3436 3498 2.058798 CCACGCGTATCCATGTGTATC 58.941 52.381 13.44 0.00 33.08 2.24
3437 3499 2.058798 CACGCGTATCCATGTGTATCC 58.941 52.381 13.44 0.00 33.08 2.59
3438 3500 1.000506 ACGCGTATCCATGTGTATCCC 59.999 52.381 11.67 0.00 32.60 3.85
3439 3501 1.671850 CGCGTATCCATGTGTATCCCC 60.672 57.143 0.00 0.00 0.00 4.81
3440 3502 1.671850 GCGTATCCATGTGTATCCCCG 60.672 57.143 0.00 0.00 0.00 5.73
3441 3503 1.616865 CGTATCCATGTGTATCCCCGT 59.383 52.381 0.00 0.00 0.00 5.28
3442 3504 2.352421 CGTATCCATGTGTATCCCCGTC 60.352 54.545 0.00 0.00 0.00 4.79
3443 3505 1.056660 ATCCATGTGTATCCCCGTCC 58.943 55.000 0.00 0.00 0.00 4.79
3444 3506 0.031515 TCCATGTGTATCCCCGTCCT 60.032 55.000 0.00 0.00 0.00 3.85
3445 3507 0.106708 CCATGTGTATCCCCGTCCTG 59.893 60.000 0.00 0.00 0.00 3.86
3446 3508 0.106708 CATGTGTATCCCCGTCCTGG 59.893 60.000 0.00 0.00 37.55 4.45
3447 3509 0.326238 ATGTGTATCCCCGTCCTGGT 60.326 55.000 0.00 0.00 35.15 4.00
3448 3510 1.261938 TGTGTATCCCCGTCCTGGTG 61.262 60.000 0.00 0.00 35.15 4.17
3449 3511 2.363975 TGTATCCCCGTCCTGGTGC 61.364 63.158 0.00 0.00 35.15 5.01
3450 3512 2.039787 TATCCCCGTCCTGGTGCA 59.960 61.111 0.00 0.00 35.15 4.57
3451 3513 2.063979 TATCCCCGTCCTGGTGCAG 61.064 63.158 0.00 0.00 35.15 4.41
3452 3514 2.815684 TATCCCCGTCCTGGTGCAGT 62.816 60.000 0.00 0.00 35.15 4.40
3453 3515 4.704833 CCCCGTCCTGGTGCAGTG 62.705 72.222 0.00 0.00 35.15 3.66
3454 3516 3.941188 CCCGTCCTGGTGCAGTGT 61.941 66.667 0.00 0.00 35.15 3.55
3455 3517 2.357517 CCGTCCTGGTGCAGTGTC 60.358 66.667 0.00 0.00 0.00 3.67
3456 3518 2.357517 CGTCCTGGTGCAGTGTCC 60.358 66.667 0.00 0.00 0.00 4.02
3457 3519 2.872388 CGTCCTGGTGCAGTGTCCT 61.872 63.158 0.00 0.00 0.00 3.85
3458 3520 1.302033 GTCCTGGTGCAGTGTCCTG 60.302 63.158 0.00 7.06 41.91 3.86
3468 3530 3.474806 GTGTCCTGCACCGATTCG 58.525 61.111 0.00 0.00 42.10 3.34
3479 3541 2.605094 CCGATTCGGCACCTATGTG 58.395 57.895 12.95 0.00 45.65 3.21
3488 3550 3.606886 CACCTATGTGCCGTATCCC 57.393 57.895 0.00 0.00 35.31 3.85
3489 3551 1.048601 CACCTATGTGCCGTATCCCT 58.951 55.000 0.00 0.00 35.31 4.20
3490 3552 1.048601 ACCTATGTGCCGTATCCCTG 58.951 55.000 0.00 0.00 0.00 4.45
3491 3553 0.320771 CCTATGTGCCGTATCCCTGC 60.321 60.000 0.00 0.00 0.00 4.85
3492 3554 0.392706 CTATGTGCCGTATCCCTGCA 59.607 55.000 0.00 0.00 0.00 4.41
3493 3555 1.002430 CTATGTGCCGTATCCCTGCAT 59.998 52.381 0.00 0.00 37.34 3.96
3494 3556 0.250467 ATGTGCCGTATCCCTGCATC 60.250 55.000 0.00 0.00 37.34 3.91
3495 3557 1.146041 GTGCCGTATCCCTGCATCA 59.854 57.895 0.00 0.00 37.34 3.07
3496 3558 0.250467 GTGCCGTATCCCTGCATCAT 60.250 55.000 0.00 0.00 37.34 2.45
3497 3559 1.001974 GTGCCGTATCCCTGCATCATA 59.998 52.381 0.00 0.00 37.34 2.15
3498 3560 1.276138 TGCCGTATCCCTGCATCATAG 59.724 52.381 0.00 0.00 0.00 2.23
3499 3561 1.550524 GCCGTATCCCTGCATCATAGA 59.449 52.381 0.00 0.00 0.00 1.98
3500 3562 2.028112 GCCGTATCCCTGCATCATAGAA 60.028 50.000 0.00 0.00 0.00 2.10
3501 3563 3.589988 CCGTATCCCTGCATCATAGAAC 58.410 50.000 0.00 0.00 0.00 3.01
3502 3564 3.006859 CCGTATCCCTGCATCATAGAACA 59.993 47.826 0.00 0.00 0.00 3.18
3503 3565 3.990469 CGTATCCCTGCATCATAGAACAC 59.010 47.826 0.00 0.00 0.00 3.32
3504 3566 4.501400 CGTATCCCTGCATCATAGAACACA 60.501 45.833 0.00 0.00 0.00 3.72
3505 3567 4.719026 ATCCCTGCATCATAGAACACAT 57.281 40.909 0.00 0.00 0.00 3.21
3506 3568 4.077300 TCCCTGCATCATAGAACACATC 57.923 45.455 0.00 0.00 0.00 3.06
3507 3569 3.144506 CCCTGCATCATAGAACACATCC 58.855 50.000 0.00 0.00 0.00 3.51
3508 3570 3.144506 CCTGCATCATAGAACACATCCC 58.855 50.000 0.00 0.00 0.00 3.85
3509 3571 3.434024 CCTGCATCATAGAACACATCCCA 60.434 47.826 0.00 0.00 0.00 4.37
3510 3572 4.395625 CTGCATCATAGAACACATCCCAT 58.604 43.478 0.00 0.00 0.00 4.00
3511 3573 5.513614 CCTGCATCATAGAACACATCCCATA 60.514 44.000 0.00 0.00 0.00 2.74
3512 3574 5.939447 TGCATCATAGAACACATCCCATAA 58.061 37.500 0.00 0.00 0.00 1.90
3513 3575 6.545567 TGCATCATAGAACACATCCCATAAT 58.454 36.000 0.00 0.00 0.00 1.28
3514 3576 6.656270 TGCATCATAGAACACATCCCATAATC 59.344 38.462 0.00 0.00 0.00 1.75
3515 3577 6.656270 GCATCATAGAACACATCCCATAATCA 59.344 38.462 0.00 0.00 0.00 2.57
3516 3578 7.338703 GCATCATAGAACACATCCCATAATCAT 59.661 37.037 0.00 0.00 0.00 2.45
3517 3579 9.895138 CATCATAGAACACATCCCATAATCATA 57.105 33.333 0.00 0.00 0.00 2.15
3551 3613 9.438228 AAAACTAGAGGAGAGTTAATTAAGCAC 57.562 33.333 0.00 0.00 36.10 4.40
3552 3614 7.719871 ACTAGAGGAGAGTTAATTAAGCACA 57.280 36.000 0.00 0.00 0.00 4.57
3553 3615 8.135382 ACTAGAGGAGAGTTAATTAAGCACAA 57.865 34.615 0.00 0.00 0.00 3.33
3554 3616 8.763601 ACTAGAGGAGAGTTAATTAAGCACAAT 58.236 33.333 0.00 0.00 0.00 2.71
3555 3617 9.606631 CTAGAGGAGAGTTAATTAAGCACAATT 57.393 33.333 0.00 1.76 32.91 2.32
3587 3649 9.878667 TTACATCAAATAATTCAAGGTACTCGA 57.121 29.630 0.00 0.00 38.49 4.04
3588 3650 8.964476 ACATCAAATAATTCAAGGTACTCGAT 57.036 30.769 0.00 0.00 38.49 3.59
3589 3651 8.830580 ACATCAAATAATTCAAGGTACTCGATG 58.169 33.333 0.00 0.00 38.49 3.84
3590 3652 9.045223 CATCAAATAATTCAAGGTACTCGATGA 57.955 33.333 0.00 0.00 38.49 2.92
3591 3653 8.420374 TCAAATAATTCAAGGTACTCGATGAC 57.580 34.615 0.00 0.00 38.49 3.06
3592 3654 8.038351 TCAAATAATTCAAGGTACTCGATGACA 58.962 33.333 0.00 0.00 38.49 3.58
3593 3655 8.331022 CAAATAATTCAAGGTACTCGATGACAG 58.669 37.037 0.00 0.00 38.49 3.51
3594 3656 2.941453 TCAAGGTACTCGATGACAGC 57.059 50.000 0.00 0.00 38.49 4.40
3595 3657 2.167662 TCAAGGTACTCGATGACAGCA 58.832 47.619 0.00 0.00 38.49 4.41
3596 3658 2.094700 TCAAGGTACTCGATGACAGCAC 60.095 50.000 0.00 0.00 38.49 4.40
3597 3659 1.545841 AGGTACTCGATGACAGCACA 58.454 50.000 0.00 0.00 0.00 4.57
3598 3660 1.893137 AGGTACTCGATGACAGCACAA 59.107 47.619 0.00 0.00 0.00 3.33
3599 3661 2.094494 AGGTACTCGATGACAGCACAAG 60.094 50.000 0.00 0.00 0.00 3.16
3600 3662 2.352814 GGTACTCGATGACAGCACAAGT 60.353 50.000 0.00 0.00 0.00 3.16
3601 3663 3.119602 GGTACTCGATGACAGCACAAGTA 60.120 47.826 0.00 0.00 0.00 2.24
3602 3664 3.876274 ACTCGATGACAGCACAAGTAT 57.124 42.857 0.00 0.00 0.00 2.12
3603 3665 3.775202 ACTCGATGACAGCACAAGTATC 58.225 45.455 0.00 0.00 0.00 2.24
3604 3666 3.445450 ACTCGATGACAGCACAAGTATCT 59.555 43.478 0.00 0.00 0.00 1.98
3605 3667 3.774066 TCGATGACAGCACAAGTATCTG 58.226 45.455 0.00 0.00 0.00 2.90
3606 3668 2.862536 CGATGACAGCACAAGTATCTGG 59.137 50.000 0.00 0.00 32.42 3.86
3607 3669 3.429410 CGATGACAGCACAAGTATCTGGA 60.429 47.826 0.00 0.00 32.42 3.86
3608 3670 4.507710 GATGACAGCACAAGTATCTGGAA 58.492 43.478 0.00 0.00 32.42 3.53
3609 3671 3.664107 TGACAGCACAAGTATCTGGAAC 58.336 45.455 0.00 0.00 32.42 3.62
3610 3672 3.003480 GACAGCACAAGTATCTGGAACC 58.997 50.000 0.00 0.00 32.42 3.62
3611 3673 2.290323 ACAGCACAAGTATCTGGAACCC 60.290 50.000 0.00 0.00 32.42 4.11
3612 3674 1.282157 AGCACAAGTATCTGGAACCCC 59.718 52.381 0.00 0.00 0.00 4.95
3613 3675 1.004277 GCACAAGTATCTGGAACCCCA 59.996 52.381 0.00 0.00 40.95 4.96
3614 3676 2.554344 GCACAAGTATCTGGAACCCCAA 60.554 50.000 0.00 0.00 42.98 4.12
3615 3677 3.877735 GCACAAGTATCTGGAACCCCAAT 60.878 47.826 0.00 0.00 42.98 3.16
3616 3678 4.627741 GCACAAGTATCTGGAACCCCAATA 60.628 45.833 0.00 0.00 42.98 1.90
3617 3679 5.505780 CACAAGTATCTGGAACCCCAATAA 58.494 41.667 0.00 0.00 42.98 1.40
3618 3680 6.129179 CACAAGTATCTGGAACCCCAATAAT 58.871 40.000 0.00 0.00 42.98 1.28
3619 3681 6.607198 CACAAGTATCTGGAACCCCAATAATT 59.393 38.462 0.00 0.00 42.98 1.40
3620 3682 7.777910 CACAAGTATCTGGAACCCCAATAATTA 59.222 37.037 0.00 0.00 42.98 1.40
3621 3683 8.511126 ACAAGTATCTGGAACCCCAATAATTAT 58.489 33.333 0.00 0.00 42.98 1.28
3622 3684 8.796475 CAAGTATCTGGAACCCCAATAATTATG 58.204 37.037 0.00 0.00 42.98 1.90
3623 3685 8.057246 AGTATCTGGAACCCCAATAATTATGT 57.943 34.615 0.00 0.00 42.98 2.29
3624 3686 8.511126 AGTATCTGGAACCCCAATAATTATGTT 58.489 33.333 0.00 0.00 42.98 2.71
3625 3687 9.802039 GTATCTGGAACCCCAATAATTATGTTA 57.198 33.333 0.00 0.00 42.98 2.41
3626 3688 8.940397 ATCTGGAACCCCAATAATTATGTTAG 57.060 34.615 0.00 0.00 42.98 2.34
3627 3689 8.108378 TCTGGAACCCCAATAATTATGTTAGA 57.892 34.615 0.00 0.00 42.98 2.10
3628 3690 7.996644 TCTGGAACCCCAATAATTATGTTAGAC 59.003 37.037 0.00 0.00 42.98 2.59
3629 3691 7.644062 TGGAACCCCAATAATTATGTTAGACA 58.356 34.615 0.00 0.00 40.09 3.41
3630 3692 7.558444 TGGAACCCCAATAATTATGTTAGACAC 59.442 37.037 0.00 0.00 40.09 3.67
3631 3693 7.558444 GGAACCCCAATAATTATGTTAGACACA 59.442 37.037 0.00 0.00 40.71 3.72
3632 3694 8.887264 AACCCCAATAATTATGTTAGACACAA 57.113 30.769 0.00 0.00 39.50 3.33
3633 3695 8.887264 ACCCCAATAATTATGTTAGACACAAA 57.113 30.769 0.00 0.00 39.50 2.83
3634 3696 8.745590 ACCCCAATAATTATGTTAGACACAAAC 58.254 33.333 0.00 0.00 39.50 2.93
3635 3697 8.966868 CCCCAATAATTATGTTAGACACAAACT 58.033 33.333 0.00 0.00 39.50 2.66
3646 3708 8.263940 TGTTAGACACAAACTATAATTGGAGC 57.736 34.615 0.00 0.00 29.87 4.70
3647 3709 7.880713 TGTTAGACACAAACTATAATTGGAGCA 59.119 33.333 0.00 0.00 29.87 4.26
3648 3710 6.743575 AGACACAAACTATAATTGGAGCAC 57.256 37.500 0.00 0.00 32.02 4.40
3649 3711 5.648092 AGACACAAACTATAATTGGAGCACC 59.352 40.000 0.00 0.00 32.02 5.01
3650 3712 4.394920 ACACAAACTATAATTGGAGCACCG 59.605 41.667 0.00 0.00 39.42 4.94
3651 3713 3.945285 ACAAACTATAATTGGAGCACCGG 59.055 43.478 0.00 0.00 39.42 5.28
3652 3714 3.926058 AACTATAATTGGAGCACCGGT 57.074 42.857 0.00 0.00 39.42 5.28
3653 3715 3.470645 ACTATAATTGGAGCACCGGTC 57.529 47.619 2.59 0.00 39.42 4.79
3654 3716 2.769663 ACTATAATTGGAGCACCGGTCA 59.230 45.455 2.59 0.00 39.42 4.02
3655 3717 2.799126 ATAATTGGAGCACCGGTCAA 57.201 45.000 2.59 6.50 39.42 3.18
3656 3718 2.107950 TAATTGGAGCACCGGTCAAG 57.892 50.000 2.59 0.00 39.42 3.02
3657 3719 0.110486 AATTGGAGCACCGGTCAAGT 59.890 50.000 2.59 1.76 39.42 3.16
3658 3720 0.981183 ATTGGAGCACCGGTCAAGTA 59.019 50.000 2.59 0.00 39.42 2.24
3659 3721 0.759959 TTGGAGCACCGGTCAAGTAA 59.240 50.000 2.59 0.00 39.42 2.24
3660 3722 0.320374 TGGAGCACCGGTCAAGTAAG 59.680 55.000 2.59 0.00 39.42 2.34
3661 3723 0.606604 GGAGCACCGGTCAAGTAAGA 59.393 55.000 2.59 0.00 0.00 2.10
3662 3724 1.672145 GGAGCACCGGTCAAGTAAGAC 60.672 57.143 2.59 0.00 37.80 3.01
3673 3735 5.627499 GTCAAGTAAGACCATTGATGCAA 57.373 39.130 0.00 0.00 35.56 4.08
3674 3736 6.012658 GTCAAGTAAGACCATTGATGCAAA 57.987 37.500 0.00 0.00 35.56 3.68
3675 3737 6.446318 GTCAAGTAAGACCATTGATGCAAAA 58.554 36.000 0.00 0.00 35.56 2.44
3676 3738 6.363357 GTCAAGTAAGACCATTGATGCAAAAC 59.637 38.462 0.00 0.00 35.56 2.43
3677 3739 6.040278 TCAAGTAAGACCATTGATGCAAAACA 59.960 34.615 0.00 0.00 0.00 2.83
3678 3740 5.772521 AGTAAGACCATTGATGCAAAACAC 58.227 37.500 0.00 0.00 0.00 3.32
3679 3741 4.669206 AAGACCATTGATGCAAAACACA 57.331 36.364 0.00 0.00 0.00 3.72
3680 3742 4.877378 AGACCATTGATGCAAAACACAT 57.123 36.364 0.00 0.00 0.00 3.21
3681 3743 5.217978 AGACCATTGATGCAAAACACATT 57.782 34.783 0.00 0.00 0.00 2.71
3682 3744 6.343716 AGACCATTGATGCAAAACACATTA 57.656 33.333 0.00 0.00 0.00 1.90
3683 3745 6.938507 AGACCATTGATGCAAAACACATTAT 58.061 32.000 0.00 0.00 0.00 1.28
3684 3746 8.065473 AGACCATTGATGCAAAACACATTATA 57.935 30.769 0.00 0.00 0.00 0.98
3685 3747 8.698210 AGACCATTGATGCAAAACACATTATAT 58.302 29.630 0.00 0.00 0.00 0.86
3686 3748 9.316730 GACCATTGATGCAAAACACATTATATT 57.683 29.630 0.00 0.00 0.00 1.28
3687 3749 9.669887 ACCATTGATGCAAAACACATTATATTT 57.330 25.926 0.00 0.00 0.00 1.40
3691 3753 9.716531 TTGATGCAAAACACATTATATTTTCCA 57.283 25.926 0.00 0.00 0.00 3.53
3692 3754 9.887629 TGATGCAAAACACATTATATTTTCCAT 57.112 25.926 0.00 0.00 28.65 3.41
3694 3756 9.669887 ATGCAAAACACATTATATTTTCCATGT 57.330 25.926 0.00 0.00 25.71 3.21
3714 3776 9.483916 TCCATGTAGTATTTTATTATGACACCG 57.516 33.333 0.00 0.00 0.00 4.94
3715 3777 9.483916 CCATGTAGTATTTTATTATGACACCGA 57.516 33.333 0.00 0.00 0.00 4.69
3730 3792 9.529325 TTATGACACCGAATTAGAAAGTATGAG 57.471 33.333 0.00 0.00 0.00 2.90
3731 3793 7.165460 TGACACCGAATTAGAAAGTATGAGA 57.835 36.000 0.00 0.00 0.00 3.27
3732 3794 7.608153 TGACACCGAATTAGAAAGTATGAGAA 58.392 34.615 0.00 0.00 0.00 2.87
3733 3795 8.092068 TGACACCGAATTAGAAAGTATGAGAAA 58.908 33.333 0.00 0.00 0.00 2.52
3734 3796 8.252964 ACACCGAATTAGAAAGTATGAGAAAC 57.747 34.615 0.00 0.00 0.00 2.78
3735 3797 7.333672 ACACCGAATTAGAAAGTATGAGAAACC 59.666 37.037 0.00 0.00 0.00 3.27
3736 3798 7.333423 CACCGAATTAGAAAGTATGAGAAACCA 59.667 37.037 0.00 0.00 0.00 3.67
3737 3799 7.881232 ACCGAATTAGAAAGTATGAGAAACCAA 59.119 33.333 0.00 0.00 0.00 3.67
3738 3800 8.726988 CCGAATTAGAAAGTATGAGAAACCAAA 58.273 33.333 0.00 0.00 0.00 3.28
3739 3801 9.760660 CGAATTAGAAAGTATGAGAAACCAAAG 57.239 33.333 0.00 0.00 0.00 2.77
3742 3804 8.617290 TTAGAAAGTATGAGAAACCAAAGTCC 57.383 34.615 0.00 0.00 0.00 3.85
3743 3805 6.004574 AGAAAGTATGAGAAACCAAAGTCCC 58.995 40.000 0.00 0.00 0.00 4.46
3744 3806 4.993705 AGTATGAGAAACCAAAGTCCCA 57.006 40.909 0.00 0.00 0.00 4.37
3745 3807 5.520748 AGTATGAGAAACCAAAGTCCCAT 57.479 39.130 0.00 0.00 0.00 4.00
3746 3808 6.636454 AGTATGAGAAACCAAAGTCCCATA 57.364 37.500 0.00 0.00 0.00 2.74
3747 3809 7.213178 AGTATGAGAAACCAAAGTCCCATAT 57.787 36.000 0.00 0.00 0.00 1.78
3748 3810 7.643123 AGTATGAGAAACCAAAGTCCCATATT 58.357 34.615 0.00 0.00 0.00 1.28
3749 3811 6.780457 ATGAGAAACCAAAGTCCCATATTG 57.220 37.500 0.00 0.00 0.00 1.90
3750 3812 5.886609 TGAGAAACCAAAGTCCCATATTGA 58.113 37.500 0.00 0.00 0.00 2.57
3751 3813 6.310941 TGAGAAACCAAAGTCCCATATTGAA 58.689 36.000 0.00 0.00 0.00 2.69
3752 3814 6.208599 TGAGAAACCAAAGTCCCATATTGAAC 59.791 38.462 0.00 0.00 0.00 3.18
3753 3815 6.314917 AGAAACCAAAGTCCCATATTGAACT 58.685 36.000 0.00 0.00 0.00 3.01
3754 3816 5.982890 AACCAAAGTCCCATATTGAACTG 57.017 39.130 0.00 0.00 0.00 3.16
3755 3817 3.763897 ACCAAAGTCCCATATTGAACTGC 59.236 43.478 0.00 0.00 0.00 4.40
3756 3818 3.763360 CCAAAGTCCCATATTGAACTGCA 59.237 43.478 0.00 0.00 0.00 4.41
3757 3819 4.142315 CCAAAGTCCCATATTGAACTGCAG 60.142 45.833 13.48 13.48 0.00 4.41
3758 3820 4.574674 AAGTCCCATATTGAACTGCAGA 57.425 40.909 23.35 0.00 0.00 4.26
3759 3821 4.785346 AGTCCCATATTGAACTGCAGAT 57.215 40.909 23.35 9.01 0.00 2.90
3760 3822 5.894298 AGTCCCATATTGAACTGCAGATA 57.106 39.130 23.35 8.08 0.00 1.98
3761 3823 6.252599 AGTCCCATATTGAACTGCAGATAA 57.747 37.500 23.35 12.30 0.00 1.75
3762 3824 6.662755 AGTCCCATATTGAACTGCAGATAAA 58.337 36.000 23.35 8.78 0.00 1.40
3763 3825 6.769822 AGTCCCATATTGAACTGCAGATAAAG 59.230 38.462 23.35 5.06 0.00 1.85
3764 3826 6.767902 GTCCCATATTGAACTGCAGATAAAGA 59.232 38.462 23.35 5.67 0.00 2.52
3765 3827 7.283127 GTCCCATATTGAACTGCAGATAAAGAA 59.717 37.037 23.35 0.82 0.00 2.52
3766 3828 7.833682 TCCCATATTGAACTGCAGATAAAGAAA 59.166 33.333 23.35 5.05 0.00 2.52
3767 3829 8.469200 CCCATATTGAACTGCAGATAAAGAAAA 58.531 33.333 23.35 3.46 0.00 2.29
3772 3834 9.846248 ATTGAACTGCAGATAAAGAAAATGTAC 57.154 29.630 23.35 0.00 0.00 2.90
3773 3835 7.816640 TGAACTGCAGATAAAGAAAATGTACC 58.183 34.615 23.35 0.00 0.00 3.34
3774 3836 7.665559 TGAACTGCAGATAAAGAAAATGTACCT 59.334 33.333 23.35 0.00 0.00 3.08
3775 3837 9.162764 GAACTGCAGATAAAGAAAATGTACCTA 57.837 33.333 23.35 0.00 0.00 3.08
3776 3838 9.686683 AACTGCAGATAAAGAAAATGTACCTAT 57.313 29.630 23.35 0.00 0.00 2.57
3779 3841 9.778741 TGCAGATAAAGAAAATGTACCTATAGG 57.221 33.333 17.73 17.73 42.17 2.57
3793 3855 4.667519 CCTATAGGTACTTTGCGGTCTT 57.332 45.455 10.96 0.00 41.75 3.01
3794 3856 4.618965 CCTATAGGTACTTTGCGGTCTTC 58.381 47.826 10.96 0.00 41.75 2.87
3795 3857 4.098960 CCTATAGGTACTTTGCGGTCTTCA 59.901 45.833 10.96 0.00 41.75 3.02
3796 3858 2.922740 AGGTACTTTGCGGTCTTCAA 57.077 45.000 0.00 0.00 27.25 2.69
3797 3859 2.767505 AGGTACTTTGCGGTCTTCAAG 58.232 47.619 0.00 0.00 27.25 3.02
3798 3860 2.104281 AGGTACTTTGCGGTCTTCAAGT 59.896 45.455 0.00 0.00 27.25 3.16
3799 3861 2.479275 GGTACTTTGCGGTCTTCAAGTC 59.521 50.000 0.00 0.00 0.00 3.01
3800 3862 2.622064 ACTTTGCGGTCTTCAAGTCT 57.378 45.000 0.00 0.00 0.00 3.24
3801 3863 2.919228 ACTTTGCGGTCTTCAAGTCTT 58.081 42.857 0.00 0.00 0.00 3.01
3802 3864 3.279434 ACTTTGCGGTCTTCAAGTCTTT 58.721 40.909 0.00 0.00 0.00 2.52
3803 3865 3.065371 ACTTTGCGGTCTTCAAGTCTTTG 59.935 43.478 0.00 0.00 35.57 2.77
3804 3866 0.944386 TGCGGTCTTCAAGTCTTTGC 59.056 50.000 0.00 0.00 34.21 3.68
3805 3867 0.944386 GCGGTCTTCAAGTCTTTGCA 59.056 50.000 0.00 0.00 34.21 4.08
3806 3868 1.069636 GCGGTCTTCAAGTCTTTGCAG 60.070 52.381 0.00 0.00 34.21 4.41
3807 3869 1.532868 CGGTCTTCAAGTCTTTGCAGG 59.467 52.381 0.00 0.00 34.21 4.85
3808 3870 1.268079 GGTCTTCAAGTCTTTGCAGGC 59.732 52.381 0.00 0.00 32.39 4.85
3809 3871 1.949525 GTCTTCAAGTCTTTGCAGGCA 59.050 47.619 0.00 0.00 33.23 4.75
3810 3872 1.949525 TCTTCAAGTCTTTGCAGGCAC 59.050 47.619 0.00 0.00 34.21 5.01
3811 3873 1.677576 CTTCAAGTCTTTGCAGGCACA 59.322 47.619 0.00 0.00 34.21 4.57
3812 3874 1.761449 TCAAGTCTTTGCAGGCACAA 58.239 45.000 0.00 0.00 34.21 3.33
3813 3875 2.098614 TCAAGTCTTTGCAGGCACAAA 58.901 42.857 0.00 5.72 37.20 2.83
3814 3876 2.694628 TCAAGTCTTTGCAGGCACAAAT 59.305 40.909 6.22 0.00 38.76 2.32
3815 3877 2.798283 CAAGTCTTTGCAGGCACAAATG 59.202 45.455 6.22 0.00 38.76 2.32
3816 3878 2.034124 AGTCTTTGCAGGCACAAATGT 58.966 42.857 6.22 0.00 38.76 2.71
3817 3879 3.221771 AGTCTTTGCAGGCACAAATGTA 58.778 40.909 6.22 0.00 38.76 2.29
3818 3880 3.254166 AGTCTTTGCAGGCACAAATGTAG 59.746 43.478 6.22 0.00 38.76 2.74
3819 3881 3.004734 GTCTTTGCAGGCACAAATGTAGT 59.995 43.478 6.22 0.00 38.76 2.73
3956 4018 1.005097 AGCATGAATCTGCCAAGGTGA 59.995 47.619 0.00 0.00 43.33 4.02
4020 4082 8.344446 ACAAACACCCCATTATTAGTAGAAAC 57.656 34.615 0.00 0.00 0.00 2.78
4061 4123 2.774439 ACAAACACGCCAAGCTTTAG 57.226 45.000 0.00 0.00 0.00 1.85
4194 4256 7.814107 GGATCACTTGAAATGTTTAAATCAGCA 59.186 33.333 0.00 0.00 0.00 4.41
4354 4436 7.331934 ACATATACCGGATTCAGATTTTGATCG 59.668 37.037 9.46 0.00 35.27 3.69
4460 4544 2.499197 TCAAGTTGTGTGTGTGTGTGT 58.501 42.857 2.11 0.00 0.00 3.72
4461 4545 2.225255 TCAAGTTGTGTGTGTGTGTGTG 59.775 45.455 2.11 0.00 0.00 3.82
4506 4590 4.643387 GGTCGGGCTGCAGTGGTT 62.643 66.667 16.64 0.00 0.00 3.67
4514 4598 1.588082 CTGCAGTGGTTTGGCATCC 59.412 57.895 5.25 0.00 36.87 3.51
4517 4601 2.676471 AGTGGTTTGGCATCCGGC 60.676 61.111 0.00 0.00 43.74 6.13
4657 4741 0.907704 TTGGTGGAGAGGGCGTGTAT 60.908 55.000 0.00 0.00 0.00 2.29
4671 4755 1.807755 CGTGTATGGCAGATGTCAGGG 60.808 57.143 0.00 0.00 30.80 4.45
4759 4843 1.681945 GCTGAAGCAGAGAAGTCGCG 61.682 60.000 0.00 0.00 41.59 5.87
4809 4894 3.045601 TCTAGGTGCTTCAGTTTGAGC 57.954 47.619 0.00 0.00 0.00 4.26
4873 4958 1.251251 GCAATGCCTGAGACCACTTT 58.749 50.000 0.00 0.00 0.00 2.66
4916 5001 4.296690 GAATCCGACCGTCGATCTTTAAT 58.703 43.478 22.40 1.74 43.74 1.40
5027 5112 2.293122 CCGAAGCCAACTTGAAATGTGA 59.707 45.455 0.00 0.00 35.82 3.58
5088 5173 6.083630 TCACTTGTTTTTCTTCAGTGAAACG 58.916 36.000 7.06 0.00 45.86 3.60
5194 5279 4.518970 TGGTCAAGAAAGTGAGTTATTGCC 59.481 41.667 0.00 0.00 0.00 4.52
5269 5354 5.050490 GGCGAGAATTATTGCTTCTAGTGA 58.950 41.667 11.93 0.00 33.18 3.41
5625 5710 6.575244 TGGGTGTCATTTAGATCCTACATT 57.425 37.500 0.00 0.00 0.00 2.71
5626 5711 6.969043 TGGGTGTCATTTAGATCCTACATTT 58.031 36.000 0.00 0.00 0.00 2.32
5863 5948 8.143835 ACTCAAAGTTTATCTTTTCATTGTGGG 58.856 33.333 0.00 0.00 42.95 4.61
5942 6027 3.579586 TCGTTCCAGGCCTTCTTTTACTA 59.420 43.478 0.00 0.00 0.00 1.82
6032 6117 2.208132 TAAAGGAATTTCTGCGCCCA 57.792 45.000 4.18 0.00 0.00 5.36
6052 6137 3.496692 CCAGTTCCTGATCAAGTGTTGGA 60.497 47.826 0.00 0.00 32.44 3.53
6055 6140 5.067674 CAGTTCCTGATCAAGTGTTGGAAAA 59.932 40.000 12.10 0.00 35.68 2.29
6056 6141 5.656416 AGTTCCTGATCAAGTGTTGGAAAAA 59.344 36.000 12.10 0.00 35.68 1.94
6057 6142 5.514274 TCCTGATCAAGTGTTGGAAAAAC 57.486 39.130 0.00 0.00 32.95 2.43
6058 6143 4.340950 TCCTGATCAAGTGTTGGAAAAACC 59.659 41.667 0.00 0.00 33.34 3.27
6059 6144 4.290155 CTGATCAAGTGTTGGAAAAACCG 58.710 43.478 0.00 0.00 42.61 4.44
6060 6145 3.067461 TGATCAAGTGTTGGAAAAACCGG 59.933 43.478 0.00 0.00 42.61 5.28
6061 6146 2.724454 TCAAGTGTTGGAAAAACCGGA 58.276 42.857 9.46 0.00 42.61 5.14
6062 6147 3.090037 TCAAGTGTTGGAAAAACCGGAA 58.910 40.909 9.46 0.00 42.61 4.30
6188 6273 3.935203 TCCTCGTGCTTGAATCTCAATTC 59.065 43.478 0.00 0.00 41.48 2.17
6213 6298 4.201812 TGAGTGTTTCTCTTGTTTGCTTCG 60.202 41.667 0.00 0.00 43.13 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.593095 GGTACAACCTCCTTTTTCTGTTCTT 59.407 40.000 0.00 0.00 34.73 2.52
41 42 5.131067 GGTACAACCTCCTTTTTCTGTTCT 58.869 41.667 0.00 0.00 34.73 3.01
42 43 4.277672 GGGTACAACCTCCTTTTTCTGTTC 59.722 45.833 0.00 0.00 38.64 3.18
43 44 4.079385 AGGGTACAACCTCCTTTTTCTGTT 60.079 41.667 0.00 0.00 38.64 3.16
128 129 6.772605 TGATACTACCATTACGACTAGCCTA 58.227 40.000 0.00 0.00 0.00 3.93
130 131 5.954296 TGATACTACCATTACGACTAGCC 57.046 43.478 0.00 0.00 0.00 3.93
131 132 8.266392 ACTATGATACTACCATTACGACTAGC 57.734 38.462 0.00 0.00 0.00 3.42
134 135 9.790344 ACTAACTATGATACTACCATTACGACT 57.210 33.333 0.00 0.00 0.00 4.18
149 150 9.212641 GTTGACATGCATGATACTAACTATGAT 57.787 33.333 32.75 4.97 0.00 2.45
150 151 8.424133 AGTTGACATGCATGATACTAACTATGA 58.576 33.333 32.75 0.00 0.00 2.15
151 152 8.599055 AGTTGACATGCATGATACTAACTATG 57.401 34.615 32.75 3.42 0.00 2.23
153 154 9.750125 CTTAGTTGACATGCATGATACTAACTA 57.250 33.333 32.75 27.20 31.86 2.24
154 155 7.225538 GCTTAGTTGACATGCATGATACTAACT 59.774 37.037 32.75 28.02 31.86 2.24
157 158 6.581712 TGCTTAGTTGACATGCATGATACTA 58.418 36.000 32.75 26.93 0.00 1.82
160 161 6.947644 ATTGCTTAGTTGACATGCATGATA 57.052 33.333 32.75 17.43 33.50 2.15
161 162 5.847111 ATTGCTTAGTTGACATGCATGAT 57.153 34.783 32.75 16.80 33.50 2.45
163 164 6.366604 TCAAAATTGCTTAGTTGACATGCATG 59.633 34.615 25.09 25.09 33.50 4.06
164 165 6.457355 TCAAAATTGCTTAGTTGACATGCAT 58.543 32.000 0.00 0.00 33.50 3.96
165 166 5.840715 TCAAAATTGCTTAGTTGACATGCA 58.159 33.333 0.00 0.00 0.00 3.96
166 167 6.587226 TCATCAAAATTGCTTAGTTGACATGC 59.413 34.615 0.00 0.00 33.09 4.06
167 168 7.274904 CCTCATCAAAATTGCTTAGTTGACATG 59.725 37.037 0.00 0.00 33.09 3.21
168 169 7.039504 ACCTCATCAAAATTGCTTAGTTGACAT 60.040 33.333 0.00 0.00 33.09 3.06
169 170 6.265196 ACCTCATCAAAATTGCTTAGTTGACA 59.735 34.615 0.00 0.00 33.09 3.58
171 172 6.265196 ACACCTCATCAAAATTGCTTAGTTGA 59.735 34.615 0.00 0.00 34.68 3.18
175 176 6.258230 TGACACCTCATCAAAATTGCTTAG 57.742 37.500 0.00 0.00 0.00 2.18
176 177 6.839124 ATGACACCTCATCAAAATTGCTTA 57.161 33.333 0.00 0.00 30.64 3.09
178 179 6.350445 GGTTATGACACCTCATCAAAATTGCT 60.350 38.462 0.00 0.00 38.21 3.91
179 180 5.807011 GGTTATGACACCTCATCAAAATTGC 59.193 40.000 0.00 0.00 38.21 3.56
180 181 7.161773 AGGTTATGACACCTCATCAAAATTG 57.838 36.000 0.00 0.00 44.63 2.32
230 231 9.853177 TGATACGGTATCATGATACTCTATGAT 57.147 33.333 33.88 22.01 44.05 2.45
260 261 8.826710 GCATGACACAAAGTAGTATAGCATTTA 58.173 33.333 0.00 0.00 0.00 1.40
262 263 6.823182 TGCATGACACAAAGTAGTATAGCATT 59.177 34.615 0.00 0.00 0.00 3.56
263 264 6.348498 TGCATGACACAAAGTAGTATAGCAT 58.652 36.000 0.00 0.00 0.00 3.79
265 266 6.479990 TCATGCATGACACAAAGTAGTATAGC 59.520 38.462 25.42 0.00 0.00 2.97
921 934 1.492993 GGGATACTCATCTGGGGGCC 61.493 65.000 0.00 0.00 0.00 5.80
930 943 6.041296 GCTTCAATTGGATTTGGGATACTCAT 59.959 38.462 5.42 0.00 0.00 2.90
931 944 5.360714 GCTTCAATTGGATTTGGGATACTCA 59.639 40.000 5.42 0.00 0.00 3.41
932 945 5.595952 AGCTTCAATTGGATTTGGGATACTC 59.404 40.000 5.42 0.00 0.00 2.59
933 946 5.522641 AGCTTCAATTGGATTTGGGATACT 58.477 37.500 5.42 0.00 0.00 2.12
934 947 5.221322 GGAGCTTCAATTGGATTTGGGATAC 60.221 44.000 5.42 0.00 0.00 2.24
935 948 4.895297 GGAGCTTCAATTGGATTTGGGATA 59.105 41.667 5.42 0.00 0.00 2.59
980 993 4.280174 CCATGGATTCTGATTGGTCAATCC 59.720 45.833 5.56 6.54 44.93 3.01
993 1006 0.463295 CAGCTGTCGCCATGGATTCT 60.463 55.000 18.40 0.00 36.60 2.40
1549 1571 3.710677 AGCTCCTTCACATTCAGCTCTAT 59.289 43.478 0.00 0.00 35.46 1.98
1618 1640 3.056393 ACCTTTGTTGTCCGATGATACGA 60.056 43.478 0.00 0.00 35.09 3.43
1978 2012 5.517770 GCAACAGCTTATAATGCCTTTTGAG 59.482 40.000 9.29 0.00 0.00 3.02
2039 2073 1.155042 CAAGACTTCCTCTGCAGCAC 58.845 55.000 9.47 0.00 0.00 4.40
2563 2625 6.299604 GTTGTAATCTCAGTTTCATCACACG 58.700 40.000 0.00 0.00 0.00 4.49
2696 2758 9.725019 TTCTCAACTCAGCAGATTTAATTTCTA 57.275 29.630 0.00 0.00 0.00 2.10
2887 2949 7.389232 TCATTATCTGCAGTTCAATATCGGAT 58.611 34.615 14.67 0.00 0.00 4.18
3283 3345 2.519771 TGATCAGGCCTTTCATTGCT 57.480 45.000 0.00 0.00 0.00 3.91
3284 3346 2.494870 ACTTGATCAGGCCTTTCATTGC 59.505 45.455 14.45 0.00 0.00 3.56
3285 3347 3.181503 CGACTTGATCAGGCCTTTCATTG 60.182 47.826 14.45 12.66 0.00 2.82
3286 3348 3.012518 CGACTTGATCAGGCCTTTCATT 58.987 45.455 14.45 6.44 0.00 2.57
3287 3349 2.026822 ACGACTTGATCAGGCCTTTCAT 60.027 45.455 14.45 2.39 0.00 2.57
3288 3350 1.347707 ACGACTTGATCAGGCCTTTCA 59.652 47.619 0.00 6.82 0.00 2.69
3289 3351 2.100605 ACGACTTGATCAGGCCTTTC 57.899 50.000 0.00 3.58 0.00 2.62
3290 3352 3.244422 TGTTACGACTTGATCAGGCCTTT 60.244 43.478 0.00 0.00 0.00 3.11
3291 3353 2.301870 TGTTACGACTTGATCAGGCCTT 59.698 45.455 0.00 0.00 0.00 4.35
3292 3354 1.899814 TGTTACGACTTGATCAGGCCT 59.100 47.619 0.00 0.00 0.00 5.19
3293 3355 2.271800 CTGTTACGACTTGATCAGGCC 58.728 52.381 4.46 0.00 0.00 5.19
3294 3356 1.661112 GCTGTTACGACTTGATCAGGC 59.339 52.381 4.46 0.00 0.00 4.85
3295 3357 2.271800 GGCTGTTACGACTTGATCAGG 58.728 52.381 2.78 2.78 0.00 3.86
3296 3358 2.271800 GGGCTGTTACGACTTGATCAG 58.728 52.381 0.00 0.00 0.00 2.90
3297 3359 1.066430 GGGGCTGTTACGACTTGATCA 60.066 52.381 0.00 0.00 0.00 2.92
3298 3360 1.066430 TGGGGCTGTTACGACTTGATC 60.066 52.381 0.00 0.00 0.00 2.92
3299 3361 0.981183 TGGGGCTGTTACGACTTGAT 59.019 50.000 0.00 0.00 0.00 2.57
3300 3362 0.981183 ATGGGGCTGTTACGACTTGA 59.019 50.000 0.00 0.00 0.00 3.02
3301 3363 2.277084 GTATGGGGCTGTTACGACTTG 58.723 52.381 0.00 0.00 0.00 3.16
3302 3364 1.134907 CGTATGGGGCTGTTACGACTT 60.135 52.381 7.54 0.00 40.77 3.01
3303 3365 0.458669 CGTATGGGGCTGTTACGACT 59.541 55.000 7.54 0.00 40.77 4.18
3304 3366 0.174162 ACGTATGGGGCTGTTACGAC 59.826 55.000 16.31 0.00 40.77 4.34
3305 3367 1.761449 TACGTATGGGGCTGTTACGA 58.239 50.000 16.31 2.95 40.77 3.43
3306 3368 2.806608 ATACGTATGGGGCTGTTACG 57.193 50.000 7.41 10.50 43.17 3.18
3307 3369 3.070590 AGGAATACGTATGGGGCTGTTAC 59.929 47.826 9.24 0.00 0.00 2.50
3308 3370 3.311091 AGGAATACGTATGGGGCTGTTA 58.689 45.455 9.24 0.00 0.00 2.41
3309 3371 2.104281 GAGGAATACGTATGGGGCTGTT 59.896 50.000 9.24 0.00 0.00 3.16
3310 3372 1.692519 GAGGAATACGTATGGGGCTGT 59.307 52.381 9.24 0.00 0.00 4.40
3311 3373 1.336887 CGAGGAATACGTATGGGGCTG 60.337 57.143 9.24 0.00 0.00 4.85
3312 3374 0.966920 CGAGGAATACGTATGGGGCT 59.033 55.000 9.24 0.00 0.00 5.19
3313 3375 0.037605 CCGAGGAATACGTATGGGGC 60.038 60.000 9.24 0.00 0.00 5.80
3314 3376 0.606604 CCCGAGGAATACGTATGGGG 59.393 60.000 16.64 14.14 0.00 4.96
3315 3377 1.335145 ACCCGAGGAATACGTATGGG 58.665 55.000 20.86 20.86 41.06 4.00
3316 3378 4.096984 GGTATACCCGAGGAATACGTATGG 59.903 50.000 11.17 7.30 0.00 2.74
3317 3379 5.240713 GGTATACCCGAGGAATACGTATG 57.759 47.826 11.17 0.00 0.00 2.39
3332 3394 0.538118 TGGAACACGCAGGGTATACC 59.462 55.000 13.99 13.99 40.67 2.73
3333 3395 1.935933 CTGGAACACGCAGGGTATAC 58.064 55.000 0.00 0.00 0.00 1.47
3334 3396 0.177141 GCTGGAACACGCAGGGTATA 59.823 55.000 0.00 0.00 33.80 1.47
3335 3397 1.078426 GCTGGAACACGCAGGGTAT 60.078 57.895 0.00 0.00 33.80 2.73
3336 3398 2.214216 AGCTGGAACACGCAGGGTA 61.214 57.895 0.00 0.00 35.52 3.69
3337 3399 3.560251 AGCTGGAACACGCAGGGT 61.560 61.111 0.00 0.00 35.52 4.34
3338 3400 2.449031 TACAGCTGGAACACGCAGGG 62.449 60.000 19.93 0.00 35.52 4.45
3339 3401 0.391661 ATACAGCTGGAACACGCAGG 60.392 55.000 19.93 0.00 35.52 4.85
3340 3402 1.394917 GAATACAGCTGGAACACGCAG 59.605 52.381 19.93 0.00 35.52 5.18
3341 3403 1.001974 AGAATACAGCTGGAACACGCA 59.998 47.619 19.93 0.00 35.52 5.24
3342 3404 1.394917 CAGAATACAGCTGGAACACGC 59.605 52.381 19.93 0.00 33.80 5.34
3343 3405 2.959516 TCAGAATACAGCTGGAACACG 58.040 47.619 19.93 0.20 34.20 4.49
3344 3406 5.886960 AAATCAGAATACAGCTGGAACAC 57.113 39.130 19.93 5.47 34.20 3.32
3345 3407 6.899393 AAAAATCAGAATACAGCTGGAACA 57.101 33.333 19.93 0.00 34.20 3.18
3376 3438 9.861138 CAAAGCATCACAATTTTCGAATTAAAA 57.139 25.926 0.00 0.00 33.15 1.52
3377 3439 8.494347 CCAAAGCATCACAATTTTCGAATTAAA 58.506 29.630 0.00 0.00 0.00 1.52
3378 3440 7.117523 CCCAAAGCATCACAATTTTCGAATTAA 59.882 33.333 0.00 0.00 0.00 1.40
3379 3441 6.589523 CCCAAAGCATCACAATTTTCGAATTA 59.410 34.615 0.00 0.00 0.00 1.40
3380 3442 5.409214 CCCAAAGCATCACAATTTTCGAATT 59.591 36.000 0.00 0.00 0.00 2.17
3381 3443 4.931002 CCCAAAGCATCACAATTTTCGAAT 59.069 37.500 0.00 0.00 0.00 3.34
3382 3444 4.038522 TCCCAAAGCATCACAATTTTCGAA 59.961 37.500 0.00 0.00 0.00 3.71
3383 3445 3.571828 TCCCAAAGCATCACAATTTTCGA 59.428 39.130 0.00 0.00 0.00 3.71
3384 3446 3.911868 TCCCAAAGCATCACAATTTTCG 58.088 40.909 0.00 0.00 0.00 3.46
3385 3447 5.516339 CGTATCCCAAAGCATCACAATTTTC 59.484 40.000 0.00 0.00 0.00 2.29
3386 3448 5.047377 ACGTATCCCAAAGCATCACAATTTT 60.047 36.000 0.00 0.00 0.00 1.82
3387 3449 4.462483 ACGTATCCCAAAGCATCACAATTT 59.538 37.500 0.00 0.00 0.00 1.82
3388 3450 4.016444 ACGTATCCCAAAGCATCACAATT 58.984 39.130 0.00 0.00 0.00 2.32
3389 3451 3.378112 CACGTATCCCAAAGCATCACAAT 59.622 43.478 0.00 0.00 0.00 2.71
3390 3452 2.746904 CACGTATCCCAAAGCATCACAA 59.253 45.455 0.00 0.00 0.00 3.33
3391 3453 2.290008 ACACGTATCCCAAAGCATCACA 60.290 45.455 0.00 0.00 0.00 3.58
3392 3454 2.356135 ACACGTATCCCAAAGCATCAC 58.644 47.619 0.00 0.00 0.00 3.06
3393 3455 2.779755 ACACGTATCCCAAAGCATCA 57.220 45.000 0.00 0.00 0.00 3.07
3394 3456 4.992381 GATACACGTATCCCAAAGCATC 57.008 45.455 5.99 0.00 36.75 3.91
3409 3471 0.386476 TGGATACGCGTGGGATACAC 59.614 55.000 24.59 3.86 43.67 2.90
3410 3472 1.000394 CATGGATACGCGTGGGATACA 60.000 52.381 24.59 15.38 42.51 2.29
3411 3473 1.000506 ACATGGATACGCGTGGGATAC 59.999 52.381 24.59 9.12 42.51 2.24
3412 3474 1.000394 CACATGGATACGCGTGGGATA 60.000 52.381 24.59 0.13 37.61 2.59
3413 3475 0.249868 CACATGGATACGCGTGGGAT 60.250 55.000 24.59 7.50 37.61 3.85
3414 3476 1.142965 CACATGGATACGCGTGGGA 59.857 57.895 24.59 1.10 37.61 4.37
3415 3477 0.103390 TACACATGGATACGCGTGGG 59.897 55.000 24.59 7.54 43.54 4.61
3416 3478 2.058798 GATACACATGGATACGCGTGG 58.941 52.381 24.59 6.66 43.54 4.94
3417 3479 2.058798 GGATACACATGGATACGCGTG 58.941 52.381 24.59 6.26 44.48 5.34
3418 3480 1.000506 GGGATACACATGGATACGCGT 59.999 52.381 19.17 19.17 37.87 6.01
3419 3481 1.671850 GGGGATACACATGGATACGCG 60.672 57.143 3.53 3.53 42.67 6.01
3420 3482 1.671850 CGGGGATACACATGGATACGC 60.672 57.143 0.00 0.00 44.36 4.42
3421 3483 1.616865 ACGGGGATACACATGGATACG 59.383 52.381 0.00 0.00 44.36 3.06
3422 3484 2.028385 GGACGGGGATACACATGGATAC 60.028 54.545 0.00 0.00 44.36 2.24
3423 3485 2.158219 AGGACGGGGATACACATGGATA 60.158 50.000 0.00 0.00 44.36 2.59
3424 3486 1.056660 GGACGGGGATACACATGGAT 58.943 55.000 0.00 0.00 44.36 3.41
3425 3487 0.031515 AGGACGGGGATACACATGGA 60.032 55.000 0.00 0.00 44.36 3.41
3426 3488 0.106708 CAGGACGGGGATACACATGG 59.893 60.000 0.00 0.00 44.36 3.66
3427 3489 0.106708 CCAGGACGGGGATACACATG 59.893 60.000 0.00 0.00 44.36 3.21
3428 3490 0.326238 ACCAGGACGGGGATACACAT 60.326 55.000 0.00 0.00 44.36 3.21
3429 3491 1.079621 ACCAGGACGGGGATACACA 59.920 57.895 0.00 0.00 44.36 3.72
3430 3492 1.520666 CACCAGGACGGGGATACAC 59.479 63.158 0.00 0.00 43.25 2.90
3431 3493 2.363975 GCACCAGGACGGGGATACA 61.364 63.158 0.00 0.00 43.25 2.29
3432 3494 2.311688 CTGCACCAGGACGGGGATAC 62.312 65.000 0.00 0.00 43.25 2.24
3433 3495 2.039787 TGCACCAGGACGGGGATA 59.960 61.111 0.00 0.00 43.25 2.59
3434 3496 3.402681 CTGCACCAGGACGGGGAT 61.403 66.667 0.00 0.00 43.25 3.85
3435 3497 4.954118 ACTGCACCAGGACGGGGA 62.954 66.667 0.00 0.00 43.25 4.81
3436 3498 4.704833 CACTGCACCAGGACGGGG 62.705 72.222 0.00 0.00 43.55 5.73
3437 3499 3.883744 GACACTGCACCAGGACGGG 62.884 68.421 0.00 0.00 40.22 5.28
3438 3500 2.357517 GACACTGCACCAGGACGG 60.358 66.667 0.00 0.00 42.50 4.79
3439 3501 2.357517 GGACACTGCACCAGGACG 60.358 66.667 0.00 0.00 35.51 4.79
3440 3502 1.302033 CAGGACACTGCACCAGGAC 60.302 63.158 0.00 0.00 38.01 3.85
3441 3503 3.150949 CAGGACACTGCACCAGGA 58.849 61.111 0.00 0.00 38.01 3.86
3452 3514 2.264480 CCGAATCGGTGCAGGACA 59.736 61.111 14.46 0.00 42.73 4.02
3470 3532 1.048601 AGGGATACGGCACATAGGTG 58.951 55.000 2.43 2.43 43.17 4.00
3471 3533 1.048601 CAGGGATACGGCACATAGGT 58.951 55.000 0.00 0.00 37.60 3.08
3472 3534 0.320771 GCAGGGATACGGCACATAGG 60.321 60.000 0.00 0.00 37.49 2.57
3473 3535 0.392706 TGCAGGGATACGGCACATAG 59.607 55.000 0.00 0.00 41.80 2.23
3474 3536 2.522271 TGCAGGGATACGGCACATA 58.478 52.632 0.00 0.00 41.80 2.29
3475 3537 3.319274 TGCAGGGATACGGCACAT 58.681 55.556 0.00 0.00 41.80 3.21
3479 3541 1.550524 TCTATGATGCAGGGATACGGC 59.449 52.381 0.00 0.00 37.98 5.68
3480 3542 3.006859 TGTTCTATGATGCAGGGATACGG 59.993 47.826 0.00 0.00 37.60 4.02
3481 3543 3.990469 GTGTTCTATGATGCAGGGATACG 59.010 47.826 0.00 0.00 37.60 3.06
3482 3544 4.960938 TGTGTTCTATGATGCAGGGATAC 58.039 43.478 0.00 0.00 0.00 2.24
3483 3545 5.280164 GGATGTGTTCTATGATGCAGGGATA 60.280 44.000 0.00 0.00 0.00 2.59
3484 3546 4.506271 GGATGTGTTCTATGATGCAGGGAT 60.506 45.833 0.00 0.00 0.00 3.85
3485 3547 3.181451 GGATGTGTTCTATGATGCAGGGA 60.181 47.826 0.00 0.00 0.00 4.20
3486 3548 3.144506 GGATGTGTTCTATGATGCAGGG 58.855 50.000 0.00 0.00 0.00 4.45
3487 3549 3.144506 GGGATGTGTTCTATGATGCAGG 58.855 50.000 0.00 0.00 0.00 4.85
3488 3550 3.812262 TGGGATGTGTTCTATGATGCAG 58.188 45.455 0.00 0.00 0.00 4.41
3489 3551 3.929955 TGGGATGTGTTCTATGATGCA 57.070 42.857 0.00 0.00 0.00 3.96
3490 3552 6.656270 TGATTATGGGATGTGTTCTATGATGC 59.344 38.462 0.00 0.00 0.00 3.91
3491 3553 8.803397 ATGATTATGGGATGTGTTCTATGATG 57.197 34.615 0.00 0.00 0.00 3.07
3525 3587 9.438228 GTGCTTAATTAACTCTCCTCTAGTTTT 57.562 33.333 0.00 0.00 38.18 2.43
3526 3588 8.594550 TGTGCTTAATTAACTCTCCTCTAGTTT 58.405 33.333 0.00 0.00 38.18 2.66
3527 3589 8.135382 TGTGCTTAATTAACTCTCCTCTAGTT 57.865 34.615 0.00 0.00 40.25 2.24
3528 3590 7.719871 TGTGCTTAATTAACTCTCCTCTAGT 57.280 36.000 0.00 0.00 0.00 2.57
3529 3591 9.606631 AATTGTGCTTAATTAACTCTCCTCTAG 57.393 33.333 0.00 0.00 0.00 2.43
3561 3623 9.878667 TCGAGTACCTTGAATTATTTGATGTAA 57.121 29.630 0.00 0.00 0.00 2.41
3563 3625 8.830580 CATCGAGTACCTTGAATTATTTGATGT 58.169 33.333 0.00 0.00 0.00 3.06
3564 3626 9.045223 TCATCGAGTACCTTGAATTATTTGATG 57.955 33.333 0.00 0.00 31.56 3.07
3565 3627 9.046296 GTCATCGAGTACCTTGAATTATTTGAT 57.954 33.333 0.00 0.00 0.00 2.57
3566 3628 8.038351 TGTCATCGAGTACCTTGAATTATTTGA 58.962 33.333 0.00 0.00 0.00 2.69
3567 3629 8.196802 TGTCATCGAGTACCTTGAATTATTTG 57.803 34.615 0.00 0.00 0.00 2.32
3568 3630 7.011482 GCTGTCATCGAGTACCTTGAATTATTT 59.989 37.037 0.00 0.00 0.00 1.40
3569 3631 6.480320 GCTGTCATCGAGTACCTTGAATTATT 59.520 38.462 0.00 0.00 0.00 1.40
3570 3632 5.986135 GCTGTCATCGAGTACCTTGAATTAT 59.014 40.000 0.00 0.00 0.00 1.28
3571 3633 5.105513 TGCTGTCATCGAGTACCTTGAATTA 60.106 40.000 0.00 0.00 0.00 1.40
3572 3634 4.184629 GCTGTCATCGAGTACCTTGAATT 58.815 43.478 0.00 0.00 0.00 2.17
3573 3635 3.195610 TGCTGTCATCGAGTACCTTGAAT 59.804 43.478 0.00 0.00 0.00 2.57
3574 3636 2.560981 TGCTGTCATCGAGTACCTTGAA 59.439 45.455 0.00 0.00 0.00 2.69
3575 3637 2.094700 GTGCTGTCATCGAGTACCTTGA 60.095 50.000 0.00 0.00 0.00 3.02
3576 3638 2.263077 GTGCTGTCATCGAGTACCTTG 58.737 52.381 0.00 0.00 0.00 3.61
3577 3639 1.893137 TGTGCTGTCATCGAGTACCTT 59.107 47.619 0.00 0.00 0.00 3.50
3578 3640 1.545841 TGTGCTGTCATCGAGTACCT 58.454 50.000 0.00 0.00 0.00 3.08
3579 3641 2.263077 CTTGTGCTGTCATCGAGTACC 58.737 52.381 0.00 0.00 0.00 3.34
3580 3642 2.947852 ACTTGTGCTGTCATCGAGTAC 58.052 47.619 0.00 0.00 0.00 2.73
3581 3643 4.640647 AGATACTTGTGCTGTCATCGAGTA 59.359 41.667 0.00 0.00 0.00 2.59
3582 3644 3.445450 AGATACTTGTGCTGTCATCGAGT 59.555 43.478 0.00 0.00 0.00 4.18
3583 3645 3.795639 CAGATACTTGTGCTGTCATCGAG 59.204 47.826 0.00 0.00 0.00 4.04
3584 3646 3.429410 CCAGATACTTGTGCTGTCATCGA 60.429 47.826 0.00 0.00 0.00 3.59
3585 3647 2.862536 CCAGATACTTGTGCTGTCATCG 59.137 50.000 0.00 0.00 0.00 3.84
3586 3648 4.128925 TCCAGATACTTGTGCTGTCATC 57.871 45.455 0.00 0.00 0.00 2.92
3587 3649 4.256920 GTTCCAGATACTTGTGCTGTCAT 58.743 43.478 0.00 0.00 0.00 3.06
3588 3650 3.557054 GGTTCCAGATACTTGTGCTGTCA 60.557 47.826 0.00 0.00 0.00 3.58
3589 3651 3.003480 GGTTCCAGATACTTGTGCTGTC 58.997 50.000 0.00 0.00 0.00 3.51
3590 3652 2.290323 GGGTTCCAGATACTTGTGCTGT 60.290 50.000 0.00 0.00 0.00 4.40
3591 3653 2.359900 GGGTTCCAGATACTTGTGCTG 58.640 52.381 0.00 0.00 0.00 4.41
3592 3654 1.282157 GGGGTTCCAGATACTTGTGCT 59.718 52.381 0.00 0.00 0.00 4.40
3593 3655 1.004277 TGGGGTTCCAGATACTTGTGC 59.996 52.381 0.00 0.00 38.32 4.57
3594 3656 3.433306 TTGGGGTTCCAGATACTTGTG 57.567 47.619 0.00 0.00 45.04 3.33
3595 3657 5.789574 TTATTGGGGTTCCAGATACTTGT 57.210 39.130 0.00 0.00 45.04 3.16
3596 3658 8.796475 CATAATTATTGGGGTTCCAGATACTTG 58.204 37.037 0.00 0.00 45.04 3.16
3597 3659 8.511126 ACATAATTATTGGGGTTCCAGATACTT 58.489 33.333 0.00 0.00 45.04 2.24
3598 3660 8.057246 ACATAATTATTGGGGTTCCAGATACT 57.943 34.615 0.00 0.00 45.04 2.12
3599 3661 8.706322 AACATAATTATTGGGGTTCCAGATAC 57.294 34.615 0.00 0.00 45.04 2.24
3601 3663 8.732854 TCTAACATAATTATTGGGGTTCCAGAT 58.267 33.333 0.00 0.00 45.04 2.90
3602 3664 7.996644 GTCTAACATAATTATTGGGGTTCCAGA 59.003 37.037 0.00 0.00 45.04 3.86
3603 3665 7.777910 TGTCTAACATAATTATTGGGGTTCCAG 59.222 37.037 0.00 0.00 45.04 3.86
3604 3666 7.558444 GTGTCTAACATAATTATTGGGGTTCCA 59.442 37.037 0.00 0.00 42.25 3.53
3605 3667 7.558444 TGTGTCTAACATAATTATTGGGGTTCC 59.442 37.037 0.00 0.00 32.36 3.62
3606 3668 8.514330 TGTGTCTAACATAATTATTGGGGTTC 57.486 34.615 0.00 0.00 32.36 3.62
3607 3669 8.887264 TTGTGTCTAACATAATTATTGGGGTT 57.113 30.769 0.00 0.12 38.99 4.11
3608 3670 8.745590 GTTTGTGTCTAACATAATTATTGGGGT 58.254 33.333 0.00 0.00 38.99 4.95
3609 3671 8.966868 AGTTTGTGTCTAACATAATTATTGGGG 58.033 33.333 0.00 0.00 38.99 4.96
3620 3682 8.893727 GCTCCAATTATAGTTTGTGTCTAACAT 58.106 33.333 0.00 0.00 38.99 2.71
3621 3683 7.880713 TGCTCCAATTATAGTTTGTGTCTAACA 59.119 33.333 0.00 0.00 36.85 2.41
3622 3684 8.175716 GTGCTCCAATTATAGTTTGTGTCTAAC 58.824 37.037 0.00 0.00 0.00 2.34
3623 3685 7.335924 GGTGCTCCAATTATAGTTTGTGTCTAA 59.664 37.037 0.00 0.00 0.00 2.10
3624 3686 6.821665 GGTGCTCCAATTATAGTTTGTGTCTA 59.178 38.462 0.00 0.00 0.00 2.59
3625 3687 5.648092 GGTGCTCCAATTATAGTTTGTGTCT 59.352 40.000 0.00 0.00 0.00 3.41
3626 3688 5.447279 CGGTGCTCCAATTATAGTTTGTGTC 60.447 44.000 5.52 0.00 0.00 3.67
3627 3689 4.394920 CGGTGCTCCAATTATAGTTTGTGT 59.605 41.667 5.52 0.00 0.00 3.72
3628 3690 4.201910 CCGGTGCTCCAATTATAGTTTGTG 60.202 45.833 5.52 0.00 0.00 3.33
3629 3691 3.945285 CCGGTGCTCCAATTATAGTTTGT 59.055 43.478 5.52 0.00 0.00 2.83
3630 3692 3.945285 ACCGGTGCTCCAATTATAGTTTG 59.055 43.478 6.12 0.00 0.00 2.93
3631 3693 4.196971 GACCGGTGCTCCAATTATAGTTT 58.803 43.478 14.63 0.00 0.00 2.66
3632 3694 3.199071 TGACCGGTGCTCCAATTATAGTT 59.801 43.478 14.63 0.00 0.00 2.24
3633 3695 2.769663 TGACCGGTGCTCCAATTATAGT 59.230 45.455 14.63 0.00 0.00 2.12
3634 3696 3.469008 TGACCGGTGCTCCAATTATAG 57.531 47.619 14.63 0.00 0.00 1.31
3635 3697 3.199071 ACTTGACCGGTGCTCCAATTATA 59.801 43.478 14.63 0.00 0.00 0.98
3636 3698 2.026262 ACTTGACCGGTGCTCCAATTAT 60.026 45.455 14.63 0.00 0.00 1.28
3637 3699 1.349688 ACTTGACCGGTGCTCCAATTA 59.650 47.619 14.63 0.00 0.00 1.40
3638 3700 0.110486 ACTTGACCGGTGCTCCAATT 59.890 50.000 14.63 0.51 0.00 2.32
3639 3701 0.981183 TACTTGACCGGTGCTCCAAT 59.019 50.000 14.63 3.12 0.00 3.16
3640 3702 0.759959 TTACTTGACCGGTGCTCCAA 59.240 50.000 14.63 9.33 0.00 3.53
3641 3703 0.320374 CTTACTTGACCGGTGCTCCA 59.680 55.000 14.63 0.00 0.00 3.86
3642 3704 0.606604 TCTTACTTGACCGGTGCTCC 59.393 55.000 14.63 0.00 0.00 4.70
3643 3705 1.672145 GGTCTTACTTGACCGGTGCTC 60.672 57.143 14.63 0.00 45.69 4.26
3644 3706 0.320697 GGTCTTACTTGACCGGTGCT 59.679 55.000 14.63 0.00 45.69 4.40
3645 3707 2.836944 GGTCTTACTTGACCGGTGC 58.163 57.895 14.63 4.13 45.69 5.01
3651 3713 5.627499 TTGCATCAATGGTCTTACTTGAC 57.373 39.130 0.00 0.00 32.16 3.18
3652 3714 6.040278 TGTTTTGCATCAATGGTCTTACTTGA 59.960 34.615 0.00 0.00 33.75 3.02
3653 3715 6.144402 GTGTTTTGCATCAATGGTCTTACTTG 59.856 38.462 0.00 0.00 0.00 3.16
3654 3716 6.183360 TGTGTTTTGCATCAATGGTCTTACTT 60.183 34.615 0.00 0.00 0.00 2.24
3655 3717 5.301551 TGTGTTTTGCATCAATGGTCTTACT 59.698 36.000 0.00 0.00 0.00 2.24
3656 3718 5.527951 TGTGTTTTGCATCAATGGTCTTAC 58.472 37.500 0.00 0.00 0.00 2.34
3657 3719 5.781210 TGTGTTTTGCATCAATGGTCTTA 57.219 34.783 0.00 0.00 0.00 2.10
3658 3720 4.669206 TGTGTTTTGCATCAATGGTCTT 57.331 36.364 0.00 0.00 0.00 3.01
3659 3721 4.877378 ATGTGTTTTGCATCAATGGTCT 57.123 36.364 0.00 0.00 0.00 3.85
3660 3722 8.876275 ATATAATGTGTTTTGCATCAATGGTC 57.124 30.769 0.00 0.00 0.00 4.02
3661 3723 9.669887 AAATATAATGTGTTTTGCATCAATGGT 57.330 25.926 0.00 0.00 0.00 3.55
3665 3727 9.716531 TGGAAAATATAATGTGTTTTGCATCAA 57.283 25.926 2.74 0.00 41.70 2.57
3688 3750 9.483916 CGGTGTCATAATAAAATACTACATGGA 57.516 33.333 0.00 0.00 0.00 3.41
3689 3751 9.483916 TCGGTGTCATAATAAAATACTACATGG 57.516 33.333 0.00 0.00 0.00 3.66
3704 3766 9.529325 CTCATACTTTCTAATTCGGTGTCATAA 57.471 33.333 0.00 0.00 0.00 1.90
3705 3767 8.909923 TCTCATACTTTCTAATTCGGTGTCATA 58.090 33.333 0.00 0.00 0.00 2.15
3706 3768 7.782049 TCTCATACTTTCTAATTCGGTGTCAT 58.218 34.615 0.00 0.00 0.00 3.06
3707 3769 7.165460 TCTCATACTTTCTAATTCGGTGTCA 57.835 36.000 0.00 0.00 0.00 3.58
3708 3770 8.381387 GTTTCTCATACTTTCTAATTCGGTGTC 58.619 37.037 0.00 0.00 0.00 3.67
3709 3771 7.333672 GGTTTCTCATACTTTCTAATTCGGTGT 59.666 37.037 0.00 0.00 0.00 4.16
3710 3772 7.333423 TGGTTTCTCATACTTTCTAATTCGGTG 59.667 37.037 0.00 0.00 0.00 4.94
3711 3773 7.391620 TGGTTTCTCATACTTTCTAATTCGGT 58.608 34.615 0.00 0.00 0.00 4.69
3712 3774 7.843490 TGGTTTCTCATACTTTCTAATTCGG 57.157 36.000 0.00 0.00 0.00 4.30
3713 3775 9.760660 CTTTGGTTTCTCATACTTTCTAATTCG 57.239 33.333 0.00 0.00 0.00 3.34
3716 3778 9.232473 GGACTTTGGTTTCTCATACTTTCTAAT 57.768 33.333 0.00 0.00 0.00 1.73
3717 3779 7.664318 GGGACTTTGGTTTCTCATACTTTCTAA 59.336 37.037 0.00 0.00 0.00 2.10
3718 3780 7.166167 GGGACTTTGGTTTCTCATACTTTCTA 58.834 38.462 0.00 0.00 0.00 2.10
3719 3781 6.004574 GGGACTTTGGTTTCTCATACTTTCT 58.995 40.000 0.00 0.00 0.00 2.52
3720 3782 5.768164 TGGGACTTTGGTTTCTCATACTTTC 59.232 40.000 0.00 0.00 0.00 2.62
3721 3783 5.701224 TGGGACTTTGGTTTCTCATACTTT 58.299 37.500 0.00 0.00 0.00 2.66
3722 3784 5.319043 TGGGACTTTGGTTTCTCATACTT 57.681 39.130 0.00 0.00 0.00 2.24
3723 3785 4.993705 TGGGACTTTGGTTTCTCATACT 57.006 40.909 0.00 0.00 0.00 2.12
3724 3786 7.556275 TCAATATGGGACTTTGGTTTCTCATAC 59.444 37.037 0.00 0.00 0.00 2.39
3725 3787 7.638444 TCAATATGGGACTTTGGTTTCTCATA 58.362 34.615 0.00 0.00 0.00 2.15
3726 3788 6.493166 TCAATATGGGACTTTGGTTTCTCAT 58.507 36.000 0.00 0.00 0.00 2.90
3727 3789 5.886609 TCAATATGGGACTTTGGTTTCTCA 58.113 37.500 0.00 0.00 0.00 3.27
3728 3790 6.434340 AGTTCAATATGGGACTTTGGTTTCTC 59.566 38.462 0.00 0.00 0.00 2.87
3729 3791 6.209391 CAGTTCAATATGGGACTTTGGTTTCT 59.791 38.462 0.00 0.00 0.00 2.52
3730 3792 6.389906 CAGTTCAATATGGGACTTTGGTTTC 58.610 40.000 0.00 0.00 0.00 2.78
3731 3793 5.279456 GCAGTTCAATATGGGACTTTGGTTT 60.279 40.000 0.00 0.00 0.00 3.27
3732 3794 4.220602 GCAGTTCAATATGGGACTTTGGTT 59.779 41.667 0.00 0.00 0.00 3.67
3733 3795 3.763897 GCAGTTCAATATGGGACTTTGGT 59.236 43.478 0.00 0.00 0.00 3.67
3734 3796 3.763360 TGCAGTTCAATATGGGACTTTGG 59.237 43.478 0.00 0.00 0.00 3.28
3735 3797 4.701651 TCTGCAGTTCAATATGGGACTTTG 59.298 41.667 14.67 0.00 0.00 2.77
3736 3798 4.922206 TCTGCAGTTCAATATGGGACTTT 58.078 39.130 14.67 0.00 0.00 2.66
3737 3799 4.574674 TCTGCAGTTCAATATGGGACTT 57.425 40.909 14.67 0.00 0.00 3.01
3738 3800 4.785346 ATCTGCAGTTCAATATGGGACT 57.215 40.909 14.67 0.00 0.00 3.85
3739 3801 6.767902 TCTTTATCTGCAGTTCAATATGGGAC 59.232 38.462 14.67 0.00 0.00 4.46
3740 3802 6.899089 TCTTTATCTGCAGTTCAATATGGGA 58.101 36.000 14.67 1.00 0.00 4.37
3741 3803 7.572523 TTCTTTATCTGCAGTTCAATATGGG 57.427 36.000 14.67 0.00 0.00 4.00
3746 3808 9.846248 GTACATTTTCTTTATCTGCAGTTCAAT 57.154 29.630 14.67 1.90 0.00 2.57
3747 3809 8.296713 GGTACATTTTCTTTATCTGCAGTTCAA 58.703 33.333 14.67 2.29 0.00 2.69
3748 3810 7.665559 AGGTACATTTTCTTTATCTGCAGTTCA 59.334 33.333 14.67 0.00 0.00 3.18
3749 3811 8.045176 AGGTACATTTTCTTTATCTGCAGTTC 57.955 34.615 14.67 0.00 0.00 3.01
3750 3812 9.686683 ATAGGTACATTTTCTTTATCTGCAGTT 57.313 29.630 14.67 8.22 0.00 3.16
3753 3815 9.778741 CCTATAGGTACATTTTCTTTATCTGCA 57.221 33.333 10.96 0.00 0.00 4.41
3772 3834 4.098960 TGAAGACCGCAAAGTACCTATAGG 59.901 45.833 17.73 17.73 42.17 2.57
3773 3835 5.258456 TGAAGACCGCAAAGTACCTATAG 57.742 43.478 0.00 0.00 0.00 1.31
3774 3836 5.186409 ACTTGAAGACCGCAAAGTACCTATA 59.814 40.000 0.00 0.00 0.00 1.31
3775 3837 4.020485 ACTTGAAGACCGCAAAGTACCTAT 60.020 41.667 0.00 0.00 0.00 2.57
3776 3838 3.322828 ACTTGAAGACCGCAAAGTACCTA 59.677 43.478 0.00 0.00 0.00 3.08
3777 3839 2.104281 ACTTGAAGACCGCAAAGTACCT 59.896 45.455 0.00 0.00 0.00 3.08
3778 3840 2.479275 GACTTGAAGACCGCAAAGTACC 59.521 50.000 0.00 0.00 0.00 3.34
3779 3841 3.391049 AGACTTGAAGACCGCAAAGTAC 58.609 45.455 0.00 0.00 0.00 2.73
3780 3842 3.746045 AGACTTGAAGACCGCAAAGTA 57.254 42.857 0.00 0.00 0.00 2.24
3781 3843 2.622064 AGACTTGAAGACCGCAAAGT 57.378 45.000 0.00 0.00 0.00 2.66
3782 3844 3.621794 CAAAGACTTGAAGACCGCAAAG 58.378 45.455 0.00 0.00 34.14 2.77
3783 3845 2.223479 GCAAAGACTTGAAGACCGCAAA 60.223 45.455 0.00 0.00 34.14 3.68
3784 3846 1.333619 GCAAAGACTTGAAGACCGCAA 59.666 47.619 0.00 0.00 34.14 4.85
3785 3847 0.944386 GCAAAGACTTGAAGACCGCA 59.056 50.000 0.00 0.00 34.14 5.69
3786 3848 0.944386 TGCAAAGACTTGAAGACCGC 59.056 50.000 0.00 0.00 34.14 5.68
3787 3849 1.532868 CCTGCAAAGACTTGAAGACCG 59.467 52.381 0.00 0.00 40.34 4.79
3788 3850 1.268079 GCCTGCAAAGACTTGAAGACC 59.732 52.381 0.00 0.00 40.34 3.85
3789 3851 1.949525 TGCCTGCAAAGACTTGAAGAC 59.050 47.619 0.00 0.00 40.34 3.01
3790 3852 1.949525 GTGCCTGCAAAGACTTGAAGA 59.050 47.619 0.00 0.00 40.34 2.87
3791 3853 1.677576 TGTGCCTGCAAAGACTTGAAG 59.322 47.619 0.00 0.00 37.89 3.02
3792 3854 1.761449 TGTGCCTGCAAAGACTTGAA 58.239 45.000 0.00 0.00 34.14 2.69
3793 3855 1.761449 TTGTGCCTGCAAAGACTTGA 58.239 45.000 0.00 0.00 34.14 3.02
3794 3856 2.582728 TTTGTGCCTGCAAAGACTTG 57.417 45.000 0.00 0.00 33.91 3.16
3795 3857 2.431782 ACATTTGTGCCTGCAAAGACTT 59.568 40.909 0.00 0.00 41.00 3.01
3796 3858 2.034124 ACATTTGTGCCTGCAAAGACT 58.966 42.857 0.00 0.00 41.00 3.24
3797 3859 2.514205 ACATTTGTGCCTGCAAAGAC 57.486 45.000 0.00 0.00 41.00 3.01
3798 3860 3.221771 ACTACATTTGTGCCTGCAAAGA 58.778 40.909 0.00 0.00 41.00 2.52
3799 3861 3.648339 ACTACATTTGTGCCTGCAAAG 57.352 42.857 0.00 0.00 41.00 2.77
3800 3862 3.636300 AGAACTACATTTGTGCCTGCAAA 59.364 39.130 0.00 0.00 41.77 3.68
3801 3863 3.004629 CAGAACTACATTTGTGCCTGCAA 59.995 43.478 0.00 0.00 0.00 4.08
3802 3864 2.553602 CAGAACTACATTTGTGCCTGCA 59.446 45.455 0.00 0.00 0.00 4.41
3803 3865 2.669391 GCAGAACTACATTTGTGCCTGC 60.669 50.000 0.00 0.00 39.31 4.85
3804 3866 2.816087 AGCAGAACTACATTTGTGCCTG 59.184 45.455 1.72 0.00 44.77 4.85
3805 3867 3.146104 AGCAGAACTACATTTGTGCCT 57.854 42.857 1.72 0.00 44.77 4.75
3806 3868 4.215399 TGTTAGCAGAACTACATTTGTGCC 59.785 41.667 1.72 0.00 44.77 5.01
3807 3869 5.356882 TGTTAGCAGAACTACATTTGTGC 57.643 39.130 3.52 0.00 44.18 4.57
3808 3870 8.801715 ATTTTGTTAGCAGAACTACATTTGTG 57.198 30.769 3.52 0.00 0.00 3.33
3809 3871 9.248291 CAATTTTGTTAGCAGAACTACATTTGT 57.752 29.630 3.52 0.00 0.00 2.83
3810 3872 9.248291 ACAATTTTGTTAGCAGAACTACATTTG 57.752 29.630 3.52 0.00 38.47 2.32
4020 4082 2.842457 TGGCTACATGCTCTTGCTATG 58.158 47.619 0.00 0.00 42.39 2.23
4061 4123 5.917541 TTTCTCAAATAGTTGGACGTGTC 57.082 39.130 2.65 0.00 35.29 3.67
4141 4203 7.774134 TCATTGCATTTGCTCTACAACAATAT 58.226 30.769 3.94 0.00 42.66 1.28
4431 4515 3.088532 ACACACAACTTGAAGAGGCAAA 58.911 40.909 0.00 0.00 0.00 3.68
4460 4544 1.674359 ACACAACATCTTCAACCGCA 58.326 45.000 0.00 0.00 0.00 5.69
4461 4545 2.032799 TGAACACAACATCTTCAACCGC 59.967 45.455 0.00 0.00 0.00 5.68
4506 4590 2.190313 CTAGCTGCCGGATGCCAA 59.810 61.111 5.05 0.00 40.16 4.52
4517 4601 4.408821 TTGCGGGGGTGCTAGCTG 62.409 66.667 17.23 0.07 35.36 4.24
4657 4741 1.556373 CCACTCCCTGACATCTGCCA 61.556 60.000 0.00 0.00 0.00 4.92
4671 4755 3.058639 GCTCACAGAAATTGTCACCACTC 60.059 47.826 0.00 0.00 38.16 3.51
4759 4843 0.250770 AAGAAGTTTCCCGCTCCACC 60.251 55.000 0.00 0.00 0.00 4.61
4809 4894 4.142902 GGATTTGGTGTGTCAGACGTATTG 60.143 45.833 0.00 0.00 0.00 1.90
4873 4958 5.471556 TCGTACTAGACCAAATCCAACAA 57.528 39.130 0.00 0.00 0.00 2.83
4916 5001 6.157994 ACCTCTGTTGTTATATGCTAGGGAAA 59.842 38.462 0.00 0.00 0.00 3.13
4987 5072 8.068380 GGCTTCGGTCAATATCTTATTACAAAC 58.932 37.037 0.00 0.00 0.00 2.93
5027 5112 4.514816 GGCAAAACAACACCAAGCAATAAT 59.485 37.500 0.00 0.00 0.00 1.28
5194 5279 4.274950 AGAACAATAAGACAACAACACCCG 59.725 41.667 0.00 0.00 0.00 5.28
5228 5313 7.033530 TCTCGCCTTTTCAATCAAGTAAAAA 57.966 32.000 0.00 0.00 0.00 1.94
5243 5328 6.037610 CACTAGAAGCAATAATTCTCGCCTTT 59.962 38.462 0.00 0.00 38.05 3.11
5625 5710 8.407064 ACGGACATACAACTCACAAAATAAAAA 58.593 29.630 0.00 0.00 0.00 1.94
5626 5711 7.858382 CACGGACATACAACTCACAAAATAAAA 59.142 33.333 0.00 0.00 0.00 1.52
5863 5948 3.230976 AGTTGGAATTGGTTTGAGGTCC 58.769 45.455 0.00 0.00 0.00 4.46
5909 5994 2.778299 CCTGGAACGACTTGGATGAAA 58.222 47.619 0.00 0.00 0.00 2.69
6032 6117 4.437682 TTCCAACACTTGATCAGGAACT 57.562 40.909 12.40 0.00 43.88 3.01
6052 6137 6.530019 AGAAAGCATCATATTCCGGTTTTT 57.470 33.333 0.00 0.00 0.00 1.94
6055 6140 5.930135 AGTAGAAAGCATCATATTCCGGTT 58.070 37.500 0.00 0.00 0.00 4.44
6056 6141 5.552870 AGTAGAAAGCATCATATTCCGGT 57.447 39.130 0.00 0.00 0.00 5.28
6057 6142 5.991606 TGAAGTAGAAAGCATCATATTCCGG 59.008 40.000 0.00 0.00 0.00 5.14
6058 6143 6.703607 ACTGAAGTAGAAAGCATCATATTCCG 59.296 38.462 0.00 0.00 0.00 4.30
6110 6195 4.927267 TGGATCACCCAACAACTATCTT 57.073 40.909 0.00 0.00 43.29 2.40
6199 6284 3.126831 AGACACTCGAAGCAAACAAGAG 58.873 45.455 0.00 0.00 35.28 2.85
6213 6298 3.818210 TCTCACTCTCACAGAAGACACTC 59.182 47.826 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.