Multiple sequence alignment - TraesCS2A01G390800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G390800 | chr2A | 100.000 | 5140 | 0 | 0 | 1 | 5140 | 640268732 | 640273871 | 0.000000e+00 | 9492.0 |
1 | TraesCS2A01G390800 | chr2A | 89.481 | 713 | 52 | 9 | 2194 | 2891 | 302436618 | 302437322 | 0.000000e+00 | 880.0 |
2 | TraesCS2A01G390800 | chr2A | 89.422 | 709 | 46 | 12 | 2198 | 2891 | 424538239 | 424537545 | 0.000000e+00 | 867.0 |
3 | TraesCS2A01G390800 | chr2A | 78.531 | 354 | 38 | 14 | 1002 | 1345 | 348629164 | 348628839 | 1.130000e-46 | 198.0 |
4 | TraesCS2A01G390800 | chr2A | 79.801 | 302 | 33 | 14 | 1040 | 1341 | 259175862 | 259175589 | 1.460000e-45 | 195.0 |
5 | TraesCS2A01G390800 | chr2A | 88.199 | 161 | 14 | 4 | 1838 | 1998 | 424538504 | 424538349 | 2.440000e-43 | 187.0 |
6 | TraesCS2A01G390800 | chr2D | 91.172 | 3908 | 178 | 76 | 744 | 4539 | 493177597 | 493173745 | 0.000000e+00 | 5151.0 |
7 | TraesCS2A01G390800 | chr2D | 90.463 | 713 | 45 | 7 | 2194 | 2891 | 245572830 | 245572126 | 0.000000e+00 | 918.0 |
8 | TraesCS2A01G390800 | chr2D | 85.343 | 539 | 35 | 16 | 191 | 704 | 493178191 | 493177672 | 7.630000e-143 | 518.0 |
9 | TraesCS2A01G390800 | chr2B | 88.938 | 3878 | 192 | 100 | 758 | 4539 | 581471536 | 581467800 | 0.000000e+00 | 4566.0 |
10 | TraesCS2A01G390800 | chr2B | 85.933 | 654 | 46 | 24 | 1967 | 2595 | 42565044 | 42565676 | 0.000000e+00 | 656.0 |
11 | TraesCS2A01G390800 | chr2B | 88.676 | 521 | 27 | 18 | 191 | 698 | 581472148 | 581471647 | 1.580000e-169 | 606.0 |
12 | TraesCS2A01G390800 | chr2B | 83.333 | 114 | 10 | 6 | 3 | 115 | 581472296 | 581472191 | 4.240000e-16 | 97.1 |
13 | TraesCS2A01G390800 | chr1D | 95.702 | 605 | 24 | 2 | 4537 | 5140 | 474732095 | 474732698 | 0.000000e+00 | 972.0 |
14 | TraesCS2A01G390800 | chr5B | 88.128 | 716 | 49 | 11 | 2190 | 2891 | 291605669 | 291604976 | 0.000000e+00 | 819.0 |
15 | TraesCS2A01G390800 | chr5B | 81.196 | 920 | 105 | 35 | 1369 | 2255 | 496648921 | 496648037 | 0.000000e+00 | 678.0 |
16 | TraesCS2A01G390800 | chr5B | 89.308 | 159 | 12 | 4 | 1838 | 1996 | 291605927 | 291605774 | 1.460000e-45 | 195.0 |
17 | TraesCS2A01G390800 | chr5A | 87.938 | 713 | 60 | 10 | 2194 | 2891 | 222769863 | 222769162 | 0.000000e+00 | 817.0 |
18 | TraesCS2A01G390800 | chr5A | 78.671 | 286 | 53 | 8 | 1182 | 1462 | 689897000 | 689897282 | 3.160000e-42 | 183.0 |
19 | TraesCS2A01G390800 | chr5A | 87.421 | 159 | 15 | 4 | 1838 | 1996 | 222770121 | 222769968 | 1.470000e-40 | 178.0 |
20 | TraesCS2A01G390800 | chr4A | 87.921 | 712 | 58 | 10 | 2194 | 2891 | 535941721 | 535942418 | 0.000000e+00 | 813.0 |
21 | TraesCS2A01G390800 | chr4A | 83.626 | 684 | 66 | 21 | 1967 | 2627 | 375968765 | 375968105 | 7.360000e-168 | 601.0 |
22 | TraesCS2A01G390800 | chr4A | 84.080 | 603 | 72 | 15 | 4539 | 5136 | 682993214 | 682992631 | 1.250000e-155 | 560.0 |
23 | TraesCS2A01G390800 | chr7B | 87.133 | 715 | 55 | 10 | 2194 | 2891 | 428783910 | 428784604 | 0.000000e+00 | 776.0 |
24 | TraesCS2A01G390800 | chr7B | 82.210 | 371 | 53 | 11 | 4778 | 5140 | 608864602 | 608864237 | 1.800000e-79 | 307.0 |
25 | TraesCS2A01G390800 | chr7B | 88.050 | 159 | 14 | 3 | 1838 | 1996 | 428783649 | 428783802 | 3.160000e-42 | 183.0 |
26 | TraesCS2A01G390800 | chr7A | 83.313 | 827 | 81 | 30 | 1365 | 2182 | 369895114 | 369894336 | 0.000000e+00 | 710.0 |
27 | TraesCS2A01G390800 | chr7A | 83.333 | 684 | 67 | 22 | 1967 | 2627 | 320367651 | 320366992 | 5.730000e-164 | 588.0 |
28 | TraesCS2A01G390800 | chr7A | 86.119 | 353 | 35 | 9 | 1002 | 1341 | 369895451 | 369895100 | 8.130000e-98 | 368.0 |
29 | TraesCS2A01G390800 | chr7A | 86.333 | 300 | 28 | 11 | 1042 | 1341 | 705117580 | 705117294 | 1.070000e-81 | 315.0 |
30 | TraesCS2A01G390800 | chr7A | 85.667 | 300 | 30 | 12 | 1042 | 1341 | 408599505 | 408599791 | 2.330000e-78 | 303.0 |
31 | TraesCS2A01G390800 | chr7A | 82.703 | 185 | 28 | 4 | 1637 | 1821 | 611728484 | 611728664 | 1.480000e-35 | 161.0 |
32 | TraesCS2A01G390800 | chr1A | 82.439 | 820 | 86 | 28 | 1370 | 2180 | 382777870 | 382777100 | 0.000000e+00 | 664.0 |
33 | TraesCS2A01G390800 | chr1A | 83.697 | 687 | 62 | 30 | 1967 | 2627 | 158971993 | 158972655 | 2.050000e-168 | 603.0 |
34 | TraesCS2A01G390800 | chr1A | 84.158 | 606 | 68 | 14 | 4535 | 5136 | 441837910 | 441837329 | 3.470000e-156 | 562.0 |
35 | TraesCS2A01G390800 | chr1A | 86.218 | 312 | 37 | 5 | 1034 | 1341 | 382778169 | 382777860 | 2.970000e-87 | 333.0 |
36 | TraesCS2A01G390800 | chr6B | 84.358 | 716 | 62 | 27 | 1967 | 2659 | 518610139 | 518610827 | 0.000000e+00 | 656.0 |
37 | TraesCS2A01G390800 | chr6B | 86.322 | 329 | 39 | 6 | 1147 | 1471 | 512234442 | 512234768 | 2.280000e-93 | 353.0 |
38 | TraesCS2A01G390800 | chr6B | 85.220 | 318 | 33 | 10 | 1882 | 2188 | 637179454 | 637179768 | 1.070000e-81 | 315.0 |
39 | TraesCS2A01G390800 | chr7D | 85.050 | 602 | 69 | 10 | 4538 | 5136 | 599195828 | 599196411 | 1.230000e-165 | 593.0 |
40 | TraesCS2A01G390800 | chr7D | 82.703 | 185 | 28 | 4 | 1637 | 1821 | 531439814 | 531439994 | 1.480000e-35 | 161.0 |
41 | TraesCS2A01G390800 | chr1B | 81.011 | 811 | 98 | 33 | 1379 | 2182 | 82619649 | 82618888 | 1.230000e-165 | 593.0 |
42 | TraesCS2A01G390800 | chr1B | 85.987 | 157 | 13 | 6 | 1002 | 1149 | 468219628 | 468219472 | 5.330000e-35 | 159.0 |
43 | TraesCS2A01G390800 | chr6A | 84.080 | 603 | 72 | 15 | 4539 | 5136 | 553764598 | 553765181 | 1.250000e-155 | 560.0 |
44 | TraesCS2A01G390800 | chr6A | 86.875 | 320 | 37 | 5 | 1156 | 1471 | 452099978 | 452099660 | 2.280000e-93 | 353.0 |
45 | TraesCS2A01G390800 | chr6A | 85.632 | 174 | 15 | 3 | 2856 | 3029 | 409745543 | 409745380 | 1.900000e-39 | 174.0 |
46 | TraesCS2A01G390800 | chr6A | 78.369 | 282 | 50 | 11 | 1195 | 1471 | 410583959 | 410583684 | 6.840000e-39 | 172.0 |
47 | TraesCS2A01G390800 | chr3A | 83.887 | 602 | 65 | 15 | 4538 | 5136 | 437989882 | 437990454 | 3.500000e-151 | 545.0 |
48 | TraesCS2A01G390800 | chr3A | 83.476 | 351 | 46 | 8 | 4795 | 5140 | 545289384 | 545289727 | 2.990000e-82 | 316.0 |
49 | TraesCS2A01G390800 | chr5D | 81.781 | 494 | 64 | 17 | 4666 | 5136 | 370956422 | 370956912 | 1.740000e-104 | 390.0 |
50 | TraesCS2A01G390800 | chr5D | 95.556 | 45 | 2 | 0 | 4686 | 4730 | 370956494 | 370956538 | 7.140000e-09 | 73.1 |
51 | TraesCS2A01G390800 | chr6D | 86.562 | 320 | 38 | 5 | 1156 | 1471 | 315178643 | 315178325 | 1.060000e-91 | 348.0 |
52 | TraesCS2A01G390800 | chr6D | 78.873 | 284 | 45 | 13 | 1195 | 1471 | 304735660 | 304735935 | 1.470000e-40 | 178.0 |
53 | TraesCS2A01G390800 | chr3B | 83.143 | 350 | 35 | 14 | 1002 | 1341 | 397265564 | 397265229 | 1.080000e-76 | 298.0 |
54 | TraesCS2A01G390800 | chr3B | 85.632 | 174 | 15 | 3 | 2856 | 3029 | 245468780 | 245468943 | 1.900000e-39 | 174.0 |
55 | TraesCS2A01G390800 | chr3B | 91.589 | 107 | 9 | 0 | 2923 | 3029 | 397264562 | 397264456 | 1.150000e-31 | 148.0 |
56 | TraesCS2A01G390800 | chr4B | 86.207 | 174 | 14 | 3 | 2856 | 3029 | 360899011 | 360898848 | 4.090000e-41 | 180.0 |
57 | TraesCS2A01G390800 | chr4B | 94.393 | 107 | 6 | 0 | 2923 | 3029 | 205679051 | 205679157 | 1.140000e-36 | 165.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G390800 | chr2A | 640268732 | 640273871 | 5139 | False | 9492.000000 | 9492 | 100.000000 | 1 | 5140 | 1 | chr2A.!!$F2 | 5139 |
1 | TraesCS2A01G390800 | chr2A | 302436618 | 302437322 | 704 | False | 880.000000 | 880 | 89.481000 | 2194 | 2891 | 1 | chr2A.!!$F1 | 697 |
2 | TraesCS2A01G390800 | chr2A | 424537545 | 424538504 | 959 | True | 527.000000 | 867 | 88.810500 | 1838 | 2891 | 2 | chr2A.!!$R3 | 1053 |
3 | TraesCS2A01G390800 | chr2D | 493173745 | 493178191 | 4446 | True | 2834.500000 | 5151 | 88.257500 | 191 | 4539 | 2 | chr2D.!!$R2 | 4348 |
4 | TraesCS2A01G390800 | chr2D | 245572126 | 245572830 | 704 | True | 918.000000 | 918 | 90.463000 | 2194 | 2891 | 1 | chr2D.!!$R1 | 697 |
5 | TraesCS2A01G390800 | chr2B | 581467800 | 581472296 | 4496 | True | 1756.366667 | 4566 | 86.982333 | 3 | 4539 | 3 | chr2B.!!$R1 | 4536 |
6 | TraesCS2A01G390800 | chr2B | 42565044 | 42565676 | 632 | False | 656.000000 | 656 | 85.933000 | 1967 | 2595 | 1 | chr2B.!!$F1 | 628 |
7 | TraesCS2A01G390800 | chr1D | 474732095 | 474732698 | 603 | False | 972.000000 | 972 | 95.702000 | 4537 | 5140 | 1 | chr1D.!!$F1 | 603 |
8 | TraesCS2A01G390800 | chr5B | 496648037 | 496648921 | 884 | True | 678.000000 | 678 | 81.196000 | 1369 | 2255 | 1 | chr5B.!!$R1 | 886 |
9 | TraesCS2A01G390800 | chr5B | 291604976 | 291605927 | 951 | True | 507.000000 | 819 | 88.718000 | 1838 | 2891 | 2 | chr5B.!!$R2 | 1053 |
10 | TraesCS2A01G390800 | chr5A | 222769162 | 222770121 | 959 | True | 497.500000 | 817 | 87.679500 | 1838 | 2891 | 2 | chr5A.!!$R1 | 1053 |
11 | TraesCS2A01G390800 | chr4A | 535941721 | 535942418 | 697 | False | 813.000000 | 813 | 87.921000 | 2194 | 2891 | 1 | chr4A.!!$F1 | 697 |
12 | TraesCS2A01G390800 | chr4A | 375968105 | 375968765 | 660 | True | 601.000000 | 601 | 83.626000 | 1967 | 2627 | 1 | chr4A.!!$R1 | 660 |
13 | TraesCS2A01G390800 | chr4A | 682992631 | 682993214 | 583 | True | 560.000000 | 560 | 84.080000 | 4539 | 5136 | 1 | chr4A.!!$R2 | 597 |
14 | TraesCS2A01G390800 | chr7B | 428783649 | 428784604 | 955 | False | 479.500000 | 776 | 87.591500 | 1838 | 2891 | 2 | chr7B.!!$F1 | 1053 |
15 | TraesCS2A01G390800 | chr7A | 320366992 | 320367651 | 659 | True | 588.000000 | 588 | 83.333000 | 1967 | 2627 | 1 | chr7A.!!$R1 | 660 |
16 | TraesCS2A01G390800 | chr7A | 369894336 | 369895451 | 1115 | True | 539.000000 | 710 | 84.716000 | 1002 | 2182 | 2 | chr7A.!!$R3 | 1180 |
17 | TraesCS2A01G390800 | chr1A | 158971993 | 158972655 | 662 | False | 603.000000 | 603 | 83.697000 | 1967 | 2627 | 1 | chr1A.!!$F1 | 660 |
18 | TraesCS2A01G390800 | chr1A | 441837329 | 441837910 | 581 | True | 562.000000 | 562 | 84.158000 | 4535 | 5136 | 1 | chr1A.!!$R1 | 601 |
19 | TraesCS2A01G390800 | chr1A | 382777100 | 382778169 | 1069 | True | 498.500000 | 664 | 84.328500 | 1034 | 2180 | 2 | chr1A.!!$R2 | 1146 |
20 | TraesCS2A01G390800 | chr6B | 518610139 | 518610827 | 688 | False | 656.000000 | 656 | 84.358000 | 1967 | 2659 | 1 | chr6B.!!$F2 | 692 |
21 | TraesCS2A01G390800 | chr7D | 599195828 | 599196411 | 583 | False | 593.000000 | 593 | 85.050000 | 4538 | 5136 | 1 | chr7D.!!$F2 | 598 |
22 | TraesCS2A01G390800 | chr1B | 82618888 | 82619649 | 761 | True | 593.000000 | 593 | 81.011000 | 1379 | 2182 | 1 | chr1B.!!$R1 | 803 |
23 | TraesCS2A01G390800 | chr6A | 553764598 | 553765181 | 583 | False | 560.000000 | 560 | 84.080000 | 4539 | 5136 | 1 | chr6A.!!$F1 | 597 |
24 | TraesCS2A01G390800 | chr3A | 437989882 | 437990454 | 572 | False | 545.000000 | 545 | 83.887000 | 4538 | 5136 | 1 | chr3A.!!$F1 | 598 |
25 | TraesCS2A01G390800 | chr3B | 397264456 | 397265564 | 1108 | True | 223.000000 | 298 | 87.366000 | 1002 | 3029 | 2 | chr3B.!!$R1 | 2027 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
94 | 95 | 0.034756 | AAGGCATATCGCATACGGCA | 59.965 | 50.0 | 0.00 | 0.00 | 45.17 | 5.69 | F |
183 | 184 | 0.168348 | CTGCTGCTGCTGCTGTTTAG | 59.832 | 55.0 | 27.67 | 15.15 | 39.81 | 1.85 | F |
209 | 217 | 0.179000 | ACAGCCGATCCAGTGAATCC | 59.821 | 55.0 | 0.00 | 0.00 | 0.00 | 3.01 | F |
753 | 826 | 0.179100 | ACGTCTCCATTCCTGATGCG | 60.179 | 55.0 | 0.00 | 0.00 | 34.25 | 4.73 | F |
2090 | 2308 | 0.033781 | CGACGACCAACCCCTAACAA | 59.966 | 55.0 | 0.00 | 0.00 | 0.00 | 2.83 | F |
2599 | 2931 | 0.165295 | GGAAGCAAACGTAACGCCTC | 59.835 | 55.0 | 0.00 | 0.00 | 0.00 | 4.70 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1862 | 2045 | 0.329931 | ACGGAGAGAGCAGAGAAGGA | 59.670 | 55.000 | 0.00 | 0.0 | 0.00 | 3.36 | R |
1914 | 2097 | 0.599204 | ACAGTAACAGCAACGACCCG | 60.599 | 55.000 | 0.00 | 0.0 | 0.00 | 5.28 | R |
2037 | 2253 | 2.546373 | CGGTTAACAAGTGAGAACGGGA | 60.546 | 50.000 | 8.10 | 0.0 | 0.00 | 5.14 | R |
2717 | 3118 | 2.333014 | GTCAGGCTGAAGTCGAAGAAG | 58.667 | 52.381 | 20.62 | 0.0 | 39.69 | 2.85 | R |
2970 | 3378 | 0.173708 | CGGAGGTGACAGTCTAAGCC | 59.826 | 60.000 | 1.31 | 0.0 | 0.00 | 4.35 | R |
4427 | 4859 | 0.323725 | AGTCGGCGGTTTACCCTCTA | 60.324 | 55.000 | 7.21 | 0.0 | 0.00 | 2.43 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 38 | 2.107366 | TGATCCCAATCACGCTAGACA | 58.893 | 47.619 | 0.00 | 0.00 | 36.98 | 3.41 |
42 | 43 | 1.672737 | CCAATCACGCTAGACAGTGCA | 60.673 | 52.381 | 0.00 | 0.00 | 38.19 | 4.57 |
81 | 82 | 0.108329 | CGACTAACGGACCAAGGCAT | 60.108 | 55.000 | 0.00 | 0.00 | 38.46 | 4.40 |
82 | 83 | 1.135527 | CGACTAACGGACCAAGGCATA | 59.864 | 52.381 | 0.00 | 0.00 | 38.46 | 3.14 |
83 | 84 | 2.223971 | CGACTAACGGACCAAGGCATAT | 60.224 | 50.000 | 0.00 | 0.00 | 38.46 | 1.78 |
84 | 85 | 3.391049 | GACTAACGGACCAAGGCATATC | 58.609 | 50.000 | 0.00 | 0.00 | 0.00 | 1.63 |
85 | 86 | 2.223971 | ACTAACGGACCAAGGCATATCG | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
86 | 87 | 0.814010 | AACGGACCAAGGCATATCGC | 60.814 | 55.000 | 0.00 | 0.00 | 41.28 | 4.58 |
92 | 93 | 1.078709 | CCAAGGCATATCGCATACGG | 58.921 | 55.000 | 0.00 | 0.00 | 45.17 | 4.02 |
93 | 94 | 0.443869 | CAAGGCATATCGCATACGGC | 59.556 | 55.000 | 0.00 | 0.00 | 45.17 | 5.68 |
94 | 95 | 0.034756 | AAGGCATATCGCATACGGCA | 59.965 | 50.000 | 0.00 | 0.00 | 45.17 | 5.69 |
96 | 97 | 0.670546 | GGCATATCGCATACGGCAGT | 60.671 | 55.000 | 0.00 | 0.00 | 45.17 | 4.40 |
101 | 102 | 1.762222 | ATCGCATACGGCAGTTTCGC | 61.762 | 55.000 | 0.00 | 0.00 | 45.17 | 4.70 |
115 | 116 | 0.317160 | TTTCGCCGAAGCTTCAGAGA | 59.683 | 50.000 | 25.47 | 18.51 | 36.60 | 3.10 |
116 | 117 | 0.317160 | TTCGCCGAAGCTTCAGAGAA | 59.683 | 50.000 | 25.47 | 22.89 | 36.60 | 2.87 |
117 | 118 | 0.317160 | TCGCCGAAGCTTCAGAGAAA | 59.683 | 50.000 | 25.47 | 3.46 | 36.60 | 2.52 |
118 | 119 | 1.148310 | CGCCGAAGCTTCAGAGAAAA | 58.852 | 50.000 | 25.47 | 0.00 | 36.60 | 2.29 |
119 | 120 | 1.127582 | CGCCGAAGCTTCAGAGAAAAG | 59.872 | 52.381 | 25.47 | 6.97 | 36.60 | 2.27 |
120 | 121 | 2.147150 | GCCGAAGCTTCAGAGAAAAGT | 58.853 | 47.619 | 25.47 | 0.00 | 35.50 | 2.66 |
121 | 122 | 2.550180 | GCCGAAGCTTCAGAGAAAAGTT | 59.450 | 45.455 | 25.47 | 0.00 | 35.50 | 2.66 |
122 | 123 | 3.746492 | GCCGAAGCTTCAGAGAAAAGTTA | 59.254 | 43.478 | 25.47 | 0.00 | 35.50 | 2.24 |
123 | 124 | 4.393371 | GCCGAAGCTTCAGAGAAAAGTTAT | 59.607 | 41.667 | 25.47 | 0.00 | 35.50 | 1.89 |
124 | 125 | 5.106515 | GCCGAAGCTTCAGAGAAAAGTTATT | 60.107 | 40.000 | 25.47 | 0.00 | 35.50 | 1.40 |
125 | 126 | 6.568653 | GCCGAAGCTTCAGAGAAAAGTTATTT | 60.569 | 38.462 | 25.47 | 0.00 | 35.50 | 1.40 |
126 | 127 | 7.363431 | CCGAAGCTTCAGAGAAAAGTTATTTT | 58.637 | 34.615 | 25.47 | 0.00 | 41.34 | 1.82 |
127 | 128 | 7.862873 | CCGAAGCTTCAGAGAAAAGTTATTTTT | 59.137 | 33.333 | 25.47 | 0.00 | 41.59 | 1.94 |
153 | 154 | 8.973835 | TTTAAATGTTCAGACAAAAGTTTCGT | 57.026 | 26.923 | 0.00 | 0.00 | 39.66 | 3.85 |
155 | 156 | 9.710979 | TTAAATGTTCAGACAAAAGTTTCGTAG | 57.289 | 29.630 | 0.00 | 0.00 | 39.66 | 3.51 |
159 | 160 | 6.477688 | TGTTCAGACAAAAGTTTCGTAGTAGG | 59.522 | 38.462 | 0.00 | 0.00 | 31.49 | 3.18 |
167 | 168 | 4.961435 | AGTTTCGTAGTAGGACTACTGC | 57.039 | 45.455 | 19.48 | 17.17 | 46.68 | 4.40 |
168 | 169 | 4.587891 | AGTTTCGTAGTAGGACTACTGCT | 58.412 | 43.478 | 19.48 | 0.00 | 46.68 | 4.24 |
169 | 170 | 4.395542 | AGTTTCGTAGTAGGACTACTGCTG | 59.604 | 45.833 | 19.48 | 14.37 | 46.68 | 4.41 |
173 | 174 | 0.820871 | AGTAGGACTACTGCTGCTGC | 59.179 | 55.000 | 11.00 | 8.89 | 44.11 | 5.25 |
175 | 176 | 0.820226 | TAGGACTACTGCTGCTGCTG | 59.180 | 55.000 | 18.66 | 18.66 | 42.70 | 4.41 |
176 | 177 | 2.105466 | GGACTACTGCTGCTGCTGC | 61.105 | 63.158 | 22.51 | 22.51 | 41.07 | 5.25 |
178 | 179 | 1.360194 | GACTACTGCTGCTGCTGCTG | 61.360 | 60.000 | 27.75 | 27.75 | 41.07 | 4.41 |
182 | 183 | 0.535780 | ACTGCTGCTGCTGCTGTTTA | 60.536 | 50.000 | 28.83 | 11.88 | 41.07 | 2.01 |
183 | 184 | 0.168348 | CTGCTGCTGCTGCTGTTTAG | 59.832 | 55.000 | 27.67 | 15.15 | 39.81 | 1.85 |
186 | 187 | 1.000938 | GCTGCTGCTGCTGTTTAGTTT | 60.001 | 47.619 | 22.10 | 0.00 | 39.81 | 2.66 |
187 | 188 | 2.226437 | GCTGCTGCTGCTGTTTAGTTTA | 59.774 | 45.455 | 22.10 | 0.00 | 39.81 | 2.01 |
189 | 190 | 2.226437 | TGCTGCTGCTGTTTAGTTTAGC | 59.774 | 45.455 | 17.00 | 1.69 | 40.48 | 3.09 |
190 | 191 | 2.226437 | GCTGCTGCTGTTTAGTTTAGCA | 59.774 | 45.455 | 8.53 | 0.00 | 44.45 | 3.49 |
191 | 192 | 3.814945 | CTGCTGCTGTTTAGTTTAGCAC | 58.185 | 45.455 | 0.00 | 0.00 | 42.05 | 4.40 |
192 | 193 | 3.210227 | TGCTGCTGTTTAGTTTAGCACA | 58.790 | 40.909 | 0.00 | 0.00 | 42.05 | 4.57 |
196 | 197 | 3.455619 | CTGTTTAGTTTAGCACAGCCG | 57.544 | 47.619 | 0.00 | 0.00 | 30.79 | 5.52 |
197 | 198 | 3.064207 | CTGTTTAGTTTAGCACAGCCGA | 58.936 | 45.455 | 0.00 | 0.00 | 30.79 | 5.54 |
198 | 199 | 3.670625 | TGTTTAGTTTAGCACAGCCGAT | 58.329 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
206 | 214 | 1.375908 | GCACAGCCGATCCAGTGAA | 60.376 | 57.895 | 0.00 | 0.00 | 33.99 | 3.18 |
209 | 217 | 0.179000 | ACAGCCGATCCAGTGAATCC | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
225 | 233 | 2.698855 | ATCCAATCCAGTCCAACGAG | 57.301 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
229 | 237 | 0.400213 | AATCCAGTCCAACGAGCCAA | 59.600 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
230 | 238 | 0.321653 | ATCCAGTCCAACGAGCCAAC | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
231 | 239 | 1.966451 | CCAGTCCAACGAGCCAACC | 60.966 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
232 | 240 | 1.227823 | CAGTCCAACGAGCCAACCA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
240 | 248 | 2.604174 | CGAGCCAACCACGTGGAAC | 61.604 | 63.158 | 40.21 | 23.90 | 41.65 | 3.62 |
282 | 290 | 6.830114 | AAACAAAGATATACTACTGCTCGC | 57.170 | 37.500 | 0.00 | 0.00 | 0.00 | 5.03 |
283 | 291 | 5.515797 | ACAAAGATATACTACTGCTCGCA | 57.484 | 39.130 | 0.00 | 0.00 | 0.00 | 5.10 |
339 | 363 | 2.429930 | CCGCACCCAACCAGAGAA | 59.570 | 61.111 | 0.00 | 0.00 | 0.00 | 2.87 |
340 | 364 | 1.672356 | CCGCACCCAACCAGAGAAG | 60.672 | 63.158 | 0.00 | 0.00 | 0.00 | 2.85 |
341 | 365 | 1.371183 | CGCACCCAACCAGAGAAGA | 59.629 | 57.895 | 0.00 | 0.00 | 0.00 | 2.87 |
342 | 366 | 0.671781 | CGCACCCAACCAGAGAAGAG | 60.672 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
343 | 367 | 0.687354 | GCACCCAACCAGAGAAGAGA | 59.313 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
357 | 381 | 4.023291 | GAGAAGAGAGGTCAAGTGGATCT | 58.977 | 47.826 | 0.00 | 0.00 | 40.60 | 2.75 |
469 | 497 | 1.741770 | CTCCCGTTGTACTGCAGCC | 60.742 | 63.158 | 15.27 | 5.21 | 0.00 | 4.85 |
587 | 624 | 4.295119 | GTGCGTCCGTGGGAGTGT | 62.295 | 66.667 | 0.00 | 0.00 | 29.39 | 3.55 |
588 | 625 | 4.293648 | TGCGTCCGTGGGAGTGTG | 62.294 | 66.667 | 0.00 | 0.00 | 29.39 | 3.82 |
667 | 716 | 3.611674 | GGGTGGTGGGTTTTGGCG | 61.612 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
671 | 720 | 3.666253 | GGTGGGTTTTGGCGACCG | 61.666 | 66.667 | 0.00 | 0.00 | 38.08 | 4.79 |
716 | 789 | 1.502163 | CGCGGCCTTCATCATCTTCC | 61.502 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
717 | 790 | 1.169034 | GCGGCCTTCATCATCTTCCC | 61.169 | 60.000 | 0.00 | 0.00 | 0.00 | 3.97 |
720 | 793 | 1.169034 | GCCTTCATCATCTTCCCGCC | 61.169 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
724 | 797 | 2.768344 | ATCATCTTCCCGCCCGGT | 60.768 | 61.111 | 0.00 | 0.00 | 0.00 | 5.28 |
748 | 821 | 0.456221 | ACGCTACGTCTCCATTCCTG | 59.544 | 55.000 | 0.00 | 0.00 | 33.69 | 3.86 |
749 | 822 | 0.738975 | CGCTACGTCTCCATTCCTGA | 59.261 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
750 | 823 | 1.338337 | CGCTACGTCTCCATTCCTGAT | 59.662 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
751 | 824 | 2.748605 | GCTACGTCTCCATTCCTGATG | 58.251 | 52.381 | 0.00 | 0.00 | 35.42 | 3.07 |
753 | 826 | 0.179100 | ACGTCTCCATTCCTGATGCG | 60.179 | 55.000 | 0.00 | 0.00 | 34.25 | 4.73 |
781 | 901 | 2.414481 | CTCTCACTCGTTTCTTGCCATG | 59.586 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
829 | 953 | 9.959775 | CTAGCGTTTCTTTCTGTTTTCTATTAG | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
889 | 1014 | 8.738645 | AAAAGGCAATTGTTTGTTTAATACCA | 57.261 | 26.923 | 7.40 | 0.00 | 35.17 | 3.25 |
890 | 1015 | 7.961325 | AAGGCAATTGTTTGTTTAATACCAG | 57.039 | 32.000 | 7.40 | 0.00 | 35.17 | 4.00 |
891 | 1016 | 5.931724 | AGGCAATTGTTTGTTTAATACCAGC | 59.068 | 36.000 | 7.40 | 0.00 | 35.17 | 4.85 |
892 | 1017 | 5.698545 | GGCAATTGTTTGTTTAATACCAGCA | 59.301 | 36.000 | 7.40 | 0.00 | 35.17 | 4.41 |
893 | 1018 | 6.128580 | GGCAATTGTTTGTTTAATACCAGCAG | 60.129 | 38.462 | 7.40 | 0.00 | 35.17 | 4.24 |
894 | 1019 | 6.423604 | GCAATTGTTTGTTTAATACCAGCAGT | 59.576 | 34.615 | 7.40 | 0.00 | 35.17 | 4.40 |
895 | 1020 | 7.042119 | GCAATTGTTTGTTTAATACCAGCAGTT | 60.042 | 33.333 | 7.40 | 0.00 | 35.17 | 3.16 |
898 | 1023 | 7.283625 | TGTTTGTTTAATACCAGCAGTTCAT | 57.716 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
899 | 1024 | 7.367285 | TGTTTGTTTAATACCAGCAGTTCATC | 58.633 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
900 | 1025 | 5.794687 | TGTTTAATACCAGCAGTTCATCG | 57.205 | 39.130 | 0.00 | 0.00 | 0.00 | 3.84 |
901 | 1026 | 4.094294 | TGTTTAATACCAGCAGTTCATCGC | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 4.58 |
902 | 1027 | 2.698855 | AATACCAGCAGTTCATCGCT | 57.301 | 45.000 | 0.00 | 0.00 | 39.66 | 4.93 |
932 | 1072 | 1.232119 | CAACCCTTCACGTTACCACC | 58.768 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
962 | 1116 | 1.492873 | CACGCACATGGACGTCTTG | 59.507 | 57.895 | 16.46 | 15.42 | 41.32 | 3.02 |
968 | 1122 | 0.603707 | ACATGGACGTCTTGTGCCTG | 60.604 | 55.000 | 16.46 | 4.15 | 39.77 | 4.85 |
1016 | 1170 | 3.499737 | CATGGGCTCACGGCGTTC | 61.500 | 66.667 | 11.19 | 1.97 | 42.94 | 3.95 |
1263 | 1436 | 2.887568 | CTGCTCATCGGCGTGGTC | 60.888 | 66.667 | 6.85 | 1.56 | 34.52 | 4.02 |
1481 | 1654 | 0.461339 | TTCGGCGGTAATCAAGCTCC | 60.461 | 55.000 | 7.21 | 0.00 | 0.00 | 4.70 |
1482 | 1655 | 1.887707 | CGGCGGTAATCAAGCTCCC | 60.888 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
1483 | 1656 | 1.526225 | GGCGGTAATCAAGCTCCCC | 60.526 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
1484 | 1657 | 1.526225 | GCGGTAATCAAGCTCCCCC | 60.526 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
1485 | 1658 | 1.227556 | CGGTAATCAAGCTCCCCCG | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 5.73 |
1603 | 1777 | 8.887717 | CAAATCTTGATTACTAGCTTGCTAACT | 58.112 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1607 | 1781 | 8.191446 | TCTTGATTACTAGCTTGCTAACTACTG | 58.809 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1625 | 1803 | 2.806856 | GATTCGTGCTCTGCGCTGG | 61.807 | 63.158 | 14.70 | 6.44 | 40.11 | 4.85 |
1637 | 1815 | 2.593725 | CGCTGGATCCTGGGCATG | 60.594 | 66.667 | 20.32 | 4.62 | 0.00 | 4.06 |
1638 | 1816 | 2.910994 | GCTGGATCCTGGGCATGC | 60.911 | 66.667 | 19.23 | 9.90 | 0.00 | 4.06 |
1825 | 2003 | 3.835395 | CTCCCTCTCAGAAAGGTACAGTT | 59.165 | 47.826 | 0.00 | 0.00 | 31.51 | 3.16 |
1829 | 2007 | 4.282195 | CCTCTCAGAAAGGTACAGTTCAGT | 59.718 | 45.833 | 9.63 | 0.00 | 0.00 | 3.41 |
1862 | 2045 | 0.694771 | TTTCCATGCTCCTGTGCTCT | 59.305 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
1890 | 2073 | 1.142748 | CTCTCTCCGTGTCCATGGC | 59.857 | 63.158 | 6.96 | 2.72 | 37.40 | 4.40 |
1914 | 2097 | 1.202348 | CCGCACTTCCTGATTTTTCCC | 59.798 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
2085 | 2301 | 1.477685 | AACATCGACGACCAACCCCT | 61.478 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2088 | 2306 | 0.533951 | ATCGACGACCAACCCCTAAC | 59.466 | 55.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2089 | 2307 | 0.827089 | TCGACGACCAACCCCTAACA | 60.827 | 55.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2090 | 2308 | 0.033781 | CGACGACCAACCCCTAACAA | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2091 | 2309 | 1.804601 | GACGACCAACCCCTAACAAG | 58.195 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2092 | 2310 | 1.071228 | GACGACCAACCCCTAACAAGT | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2093 | 2311 | 1.071228 | ACGACCAACCCCTAACAAGTC | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
2094 | 2312 | 1.071071 | CGACCAACCCCTAACAAGTCA | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2095 | 2313 | 2.290071 | CGACCAACCCCTAACAAGTCAT | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2103 | 2321 | 7.124147 | CCAACCCCTAACAAGTCATATCATTTT | 59.876 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2105 | 2323 | 6.833933 | ACCCCTAACAAGTCATATCATTTTCC | 59.166 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
2120 | 2338 | 1.522668 | TTTCCACAATGCTGACGGAG | 58.477 | 50.000 | 0.00 | 0.00 | 31.95 | 4.63 |
2310 | 2564 | 5.045651 | TCAAGGAGATAAGAATGCAAGGTCA | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2385 | 2655 | 4.657055 | TCAAATCGTGTTTCAACTGTGTG | 58.343 | 39.130 | 0.00 | 0.00 | 0.00 | 3.82 |
2599 | 2931 | 0.165295 | GGAAGCAAACGTAACGCCTC | 59.835 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2603 | 2935 | 3.788333 | AGCAAACGTAACGCCTCTATA | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 1.31 |
2604 | 2936 | 4.317671 | AGCAAACGTAACGCCTCTATAT | 57.682 | 40.909 | 0.00 | 0.00 | 0.00 | 0.86 |
2606 | 2938 | 4.046462 | GCAAACGTAACGCCTCTATATGA | 58.954 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
2612 | 2944 | 5.298777 | ACGTAACGCCTCTATATGACTTCTT | 59.701 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2654 | 3055 | 8.558973 | AACAATTTTCAAGTTTCAATGGTTGA | 57.441 | 26.923 | 0.00 | 0.00 | 38.04 | 3.18 |
2717 | 3118 | 1.876156 | GATGATTCCGTGGCCAGATTC | 59.124 | 52.381 | 5.11 | 7.82 | 0.00 | 2.52 |
2858 | 3260 | 0.324460 | AGGAGGGGAAGTGGTACTCG | 60.324 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2921 | 3323 | 0.744414 | AGGTGTGTGTCAGTGTGTGC | 60.744 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2936 | 3340 | 3.723764 | GTGTGTGCGTGTTACTGAATTTG | 59.276 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
2969 | 3373 | 3.327757 | TCAAGGACTAGTTCAGGCACAAT | 59.672 | 43.478 | 3.42 | 0.00 | 31.57 | 2.71 |
2970 | 3378 | 3.340814 | AGGACTAGTTCAGGCACAATG | 57.659 | 47.619 | 3.42 | 0.00 | 31.57 | 2.82 |
2983 | 3391 | 2.426522 | GCACAATGGCTTAGACTGTCA | 58.573 | 47.619 | 10.88 | 0.00 | 0.00 | 3.58 |
3006 | 3414 | 1.353022 | TCCGTTTATGTCCAGGCCTTT | 59.647 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
3084 | 3492 | 2.159043 | CGTCACCCTCAAGAGCATACAT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3120 | 3528 | 0.389166 | GCCGTCTCAACAGAGGTGAG | 60.389 | 60.000 | 5.72 | 5.72 | 33.34 | 3.51 |
3127 | 3535 | 3.055819 | TCTCAACAGAGGTGAGTTATGGC | 60.056 | 47.826 | 11.44 | 0.00 | 0.00 | 4.40 |
3166 | 3574 | 4.607235 | CGCGTTTCTTTGATCTGTTGTTAC | 59.393 | 41.667 | 0.00 | 0.00 | 0.00 | 2.50 |
3167 | 3575 | 4.607235 | GCGTTTCTTTGATCTGTTGTTACG | 59.393 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3452 | 3874 | 0.035534 | TCACCGACATGAACATGGGG | 60.036 | 55.000 | 17.25 | 17.98 | 42.91 | 4.96 |
4126 | 4548 | 1.402968 | GCCGATGTGCATGAAGTTCAT | 59.597 | 47.619 | 12.75 | 12.75 | 37.65 | 2.57 |
4174 | 4596 | 3.555956 | CACAACGTCAGATTACATAGGCC | 59.444 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
4220 | 4652 | 1.155859 | AGAGCATTTTGGGGTGGCA | 59.844 | 52.632 | 0.00 | 0.00 | 0.00 | 4.92 |
4240 | 4672 | 5.808540 | TGGCAATTACGTTACATAGAGTGAC | 59.191 | 40.000 | 0.00 | 0.00 | 33.66 | 3.67 |
4369 | 4801 | 2.228103 | TGTTGTCGCCTACAGACTACAG | 59.772 | 50.000 | 8.92 | 0.00 | 44.66 | 2.74 |
4386 | 4818 | 8.132362 | CAGACTACAGAGAATATGGTGTCTTAC | 58.868 | 40.741 | 0.00 | 0.00 | 34.45 | 2.34 |
4420 | 4852 | 4.571372 | GAGAATCTCGAACTAATCCCGT | 57.429 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
4422 | 4854 | 5.340439 | AGAATCTCGAACTAATCCCGTTT | 57.660 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
4424 | 4856 | 6.505272 | AGAATCTCGAACTAATCCCGTTTAG | 58.495 | 40.000 | 0.00 | 0.00 | 35.68 | 1.85 |
4427 | 4859 | 6.029346 | TCTCGAACTAATCCCGTTTAGTTT | 57.971 | 37.500 | 13.38 | 2.76 | 46.96 | 2.66 |
4428 | 4860 | 7.156876 | TCTCGAACTAATCCCGTTTAGTTTA | 57.843 | 36.000 | 13.38 | 7.32 | 46.96 | 2.01 |
4429 | 4861 | 7.253422 | TCTCGAACTAATCCCGTTTAGTTTAG | 58.747 | 38.462 | 13.38 | 13.29 | 46.96 | 1.85 |
4430 | 4862 | 7.121168 | TCTCGAACTAATCCCGTTTAGTTTAGA | 59.879 | 37.037 | 13.38 | 14.60 | 46.96 | 2.10 |
4432 | 4864 | 6.474751 | CGAACTAATCCCGTTTAGTTTAGAGG | 59.525 | 42.308 | 13.38 | 0.00 | 46.96 | 3.69 |
4438 | 4870 | 5.793817 | TCCCGTTTAGTTTAGAGGGTAAAC | 58.206 | 41.667 | 0.00 | 0.29 | 39.78 | 2.01 |
4441 | 4873 | 4.091945 | CGTTTAGTTTAGAGGGTAAACCGC | 59.908 | 45.833 | 4.43 | 0.00 | 46.96 | 5.68 |
4445 | 4877 | 0.532115 | TTAGAGGGTAAACCGCCGAC | 59.468 | 55.000 | 0.00 | 0.00 | 46.96 | 4.79 |
4449 | 4881 | 0.462789 | AGGGTAAACCGCCGACTATG | 59.537 | 55.000 | 0.00 | 0.00 | 46.96 | 2.23 |
4461 | 4894 | 3.243177 | CGCCGACTATGTTTTAGAAGAGC | 59.757 | 47.826 | 0.00 | 0.00 | 0.00 | 4.09 |
4466 | 4899 | 6.019479 | CCGACTATGTTTTAGAAGAGCACATC | 60.019 | 42.308 | 0.00 | 0.00 | 30.70 | 3.06 |
4502 | 4941 | 7.997107 | AAAAAGTGTCTTTTTAACCGATTCC | 57.003 | 32.000 | 15.52 | 0.00 | 30.64 | 3.01 |
4506 | 4945 | 4.758165 | GTGTCTTTTTAACCGATTCCCTGA | 59.242 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
4514 | 4953 | 4.360951 | AACCGATTCCCTGAACTTAACA | 57.639 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
4520 | 4959 | 6.395629 | CGATTCCCTGAACTTAACAGAGTAA | 58.604 | 40.000 | 0.00 | 0.00 | 37.54 | 2.24 |
4523 | 4962 | 8.990163 | ATTCCCTGAACTTAACAGAGTAAAAA | 57.010 | 30.769 | 0.00 | 0.00 | 37.54 | 1.94 |
4524 | 4963 | 8.446599 | TTCCCTGAACTTAACAGAGTAAAAAG | 57.553 | 34.615 | 0.00 | 0.00 | 37.54 | 2.27 |
4525 | 4964 | 7.798071 | TCCCTGAACTTAACAGAGTAAAAAGA | 58.202 | 34.615 | 0.00 | 0.00 | 37.54 | 2.52 |
4527 | 4966 | 7.931948 | CCCTGAACTTAACAGAGTAAAAAGAGA | 59.068 | 37.037 | 0.00 | 0.00 | 37.54 | 3.10 |
4528 | 4967 | 9.495572 | CCTGAACTTAACAGAGTAAAAAGAGAT | 57.504 | 33.333 | 0.00 | 0.00 | 37.54 | 2.75 |
4605 | 5044 | 7.201857 | GCTAAGCCATCCATTTGTTAGAGATTT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
4617 | 5056 | 5.255687 | TGTTAGAGATTTGGACACATGCAT | 58.744 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
4729 | 5172 | 9.453572 | TCAATCATTTATTACTATGCTCCATCC | 57.546 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
4730 | 5173 | 8.680903 | CAATCATTTATTACTATGCTCCATCCC | 58.319 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
4731 | 5174 | 7.328404 | TCATTTATTACTATGCTCCATCCCA | 57.672 | 36.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4732 | 5175 | 7.754624 | TCATTTATTACTATGCTCCATCCCAA | 58.245 | 34.615 | 0.00 | 0.00 | 0.00 | 4.12 |
4733 | 5176 | 7.665559 | TCATTTATTACTATGCTCCATCCCAAC | 59.334 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
4734 | 5177 | 6.508030 | TTATTACTATGCTCCATCCCAACA | 57.492 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
4735 | 5178 | 2.717639 | ACTATGCTCCATCCCAACAC | 57.282 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4736 | 5179 | 1.134401 | ACTATGCTCCATCCCAACACG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
4737 | 5180 | 0.908910 | TATGCTCCATCCCAACACGT | 59.091 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
4738 | 5181 | 0.038166 | ATGCTCCATCCCAACACGTT | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 |
4739 | 5182 | 0.605319 | TGCTCCATCCCAACACGTTC | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
4740 | 5183 | 0.605319 | GCTCCATCCCAACACGTTCA | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4744 | 5187 | 0.874390 | CATCCCAACACGTTCACCAG | 59.126 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4896 | 5353 | 2.984562 | TCCGCATATTTGTGCTTCTCA | 58.015 | 42.857 | 0.00 | 0.00 | 42.88 | 3.27 |
5050 | 5509 | 4.685924 | TCTTGTTTAAAAGGTCTCGTCGT | 58.314 | 39.130 | 0.00 | 0.00 | 0.00 | 4.34 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
5 | 6 | 0.530744 | TGGGATCACACTCACTACGC | 59.469 | 55.000 | 0.00 | 0.00 | 0.00 | 4.42 |
37 | 38 | 4.142902 | GCGTAATATTGTTGTGTCTGCACT | 60.143 | 41.667 | 0.00 | 0.00 | 45.44 | 4.40 |
42 | 43 | 4.090930 | GTCGTGCGTAATATTGTTGTGTCT | 59.909 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
51 | 52 | 4.037690 | GTCCGTTAGTCGTGCGTAATATT | 58.962 | 43.478 | 0.00 | 0.00 | 37.94 | 1.28 |
53 | 54 | 2.223249 | GGTCCGTTAGTCGTGCGTAATA | 60.223 | 50.000 | 0.00 | 0.00 | 37.94 | 0.98 |
55 | 56 | 0.109781 | GGTCCGTTAGTCGTGCGTAA | 60.110 | 55.000 | 0.00 | 0.00 | 37.94 | 3.18 |
56 | 57 | 1.233950 | TGGTCCGTTAGTCGTGCGTA | 61.234 | 55.000 | 0.00 | 0.00 | 37.94 | 4.42 |
70 | 71 | 2.076863 | GTATGCGATATGCCTTGGTCC | 58.923 | 52.381 | 0.00 | 0.00 | 45.60 | 4.46 |
73 | 74 | 1.078709 | CCGTATGCGATATGCCTTGG | 58.921 | 55.000 | 4.21 | 0.00 | 45.60 | 3.61 |
81 | 82 | 1.483316 | CGAAACTGCCGTATGCGATA | 58.517 | 50.000 | 4.21 | 0.00 | 45.60 | 2.92 |
82 | 83 | 1.762222 | GCGAAACTGCCGTATGCGAT | 61.762 | 55.000 | 4.21 | 0.00 | 45.60 | 4.58 |
83 | 84 | 2.449525 | GCGAAACTGCCGTATGCGA | 61.450 | 57.895 | 4.21 | 0.00 | 45.60 | 5.10 |
84 | 85 | 2.021380 | GCGAAACTGCCGTATGCG | 59.979 | 61.111 | 0.00 | 0.00 | 45.60 | 4.73 |
85 | 86 | 2.403586 | GGCGAAACTGCCGTATGC | 59.596 | 61.111 | 0.00 | 0.00 | 46.75 | 3.14 |
96 | 97 | 2.805295 | TTTCTCTGAAGCTTCGGCGAAA | 60.805 | 45.455 | 33.98 | 33.98 | 42.01 | 3.46 |
101 | 102 | 6.487689 | AATAACTTTTCTCTGAAGCTTCGG | 57.512 | 37.500 | 26.56 | 26.56 | 34.85 | 4.30 |
127 | 128 | 9.413048 | ACGAAACTTTTGTCTGAACATTTAAAA | 57.587 | 25.926 | 0.00 | 0.00 | 34.73 | 1.52 |
128 | 129 | 8.973835 | ACGAAACTTTTGTCTGAACATTTAAA | 57.026 | 26.923 | 0.00 | 0.00 | 34.73 | 1.52 |
129 | 130 | 9.710979 | CTACGAAACTTTTGTCTGAACATTTAA | 57.289 | 29.630 | 0.00 | 0.00 | 34.73 | 1.52 |
130 | 131 | 8.885722 | ACTACGAAACTTTTGTCTGAACATTTA | 58.114 | 29.630 | 0.00 | 0.00 | 34.73 | 1.40 |
131 | 132 | 7.758495 | ACTACGAAACTTTTGTCTGAACATTT | 58.242 | 30.769 | 0.00 | 0.00 | 34.73 | 2.32 |
132 | 133 | 7.316544 | ACTACGAAACTTTTGTCTGAACATT | 57.683 | 32.000 | 0.00 | 0.00 | 34.73 | 2.71 |
133 | 134 | 6.920569 | ACTACGAAACTTTTGTCTGAACAT | 57.079 | 33.333 | 0.00 | 0.00 | 34.73 | 2.71 |
134 | 135 | 6.477688 | CCTACTACGAAACTTTTGTCTGAACA | 59.522 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
135 | 136 | 6.698766 | TCCTACTACGAAACTTTTGTCTGAAC | 59.301 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
136 | 137 | 6.698766 | GTCCTACTACGAAACTTTTGTCTGAA | 59.301 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
137 | 138 | 6.040166 | AGTCCTACTACGAAACTTTTGTCTGA | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
138 | 139 | 6.214399 | AGTCCTACTACGAAACTTTTGTCTG | 58.786 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
139 | 140 | 6.402456 | AGTCCTACTACGAAACTTTTGTCT | 57.598 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
140 | 141 | 7.559835 | GTAGTCCTACTACGAAACTTTTGTC | 57.440 | 40.000 | 1.73 | 0.00 | 41.27 | 3.18 |
152 | 153 | 4.493801 | AGCAGCAGCAGTAGTCCTACTAC | 61.494 | 52.174 | 3.17 | 8.81 | 43.98 | 2.73 |
153 | 154 | 2.025155 | GCAGCAGCAGTAGTCCTACTA | 58.975 | 52.381 | 6.66 | 0.00 | 43.98 | 1.82 |
154 | 155 | 0.820871 | GCAGCAGCAGTAGTCCTACT | 59.179 | 55.000 | 1.08 | 1.08 | 46.52 | 2.57 |
155 | 156 | 0.820871 | AGCAGCAGCAGTAGTCCTAC | 59.179 | 55.000 | 3.17 | 0.00 | 45.49 | 3.18 |
159 | 160 | 1.079266 | AGCAGCAGCAGCAGTAGTC | 60.079 | 57.895 | 12.92 | 0.00 | 45.49 | 2.59 |
167 | 168 | 3.669023 | GCTAAACTAAACAGCAGCAGCAG | 60.669 | 47.826 | 3.17 | 0.00 | 45.49 | 4.24 |
168 | 169 | 2.226437 | GCTAAACTAAACAGCAGCAGCA | 59.774 | 45.455 | 3.17 | 0.00 | 45.49 | 4.41 |
169 | 170 | 2.226437 | TGCTAAACTAAACAGCAGCAGC | 59.774 | 45.455 | 0.00 | 0.00 | 40.26 | 5.25 |
176 | 177 | 3.064207 | TCGGCTGTGCTAAACTAAACAG | 58.936 | 45.455 | 0.00 | 0.00 | 42.35 | 3.16 |
178 | 179 | 3.063588 | GGATCGGCTGTGCTAAACTAAAC | 59.936 | 47.826 | 0.00 | 0.00 | 0.00 | 2.01 |
182 | 183 | 0.613260 | TGGATCGGCTGTGCTAAACT | 59.387 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
183 | 184 | 1.009829 | CTGGATCGGCTGTGCTAAAC | 58.990 | 55.000 | 0.00 | 0.00 | 0.00 | 2.01 |
186 | 187 | 0.970427 | TCACTGGATCGGCTGTGCTA | 60.970 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
187 | 188 | 1.830587 | TTCACTGGATCGGCTGTGCT | 61.831 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
189 | 190 | 1.293924 | GATTCACTGGATCGGCTGTG | 58.706 | 55.000 | 0.00 | 3.58 | 0.00 | 3.66 |
190 | 191 | 0.179000 | GGATTCACTGGATCGGCTGT | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
191 | 192 | 0.178767 | TGGATTCACTGGATCGGCTG | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
192 | 193 | 0.911769 | TTGGATTCACTGGATCGGCT | 59.088 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
194 | 195 | 2.158769 | TGGATTGGATTCACTGGATCGG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
195 | 196 | 3.136763 | CTGGATTGGATTCACTGGATCG | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
196 | 197 | 4.133078 | GACTGGATTGGATTCACTGGATC | 58.867 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
197 | 198 | 3.117738 | GGACTGGATTGGATTCACTGGAT | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
198 | 199 | 2.239654 | GGACTGGATTGGATTCACTGGA | 59.760 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
206 | 214 | 1.407437 | GCTCGTTGGACTGGATTGGAT | 60.407 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
209 | 217 | 0.321564 | TGGCTCGTTGGACTGGATTG | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
225 | 233 | 2.551912 | CCAGTTCCACGTGGTTGGC | 61.552 | 63.158 | 32.74 | 20.20 | 36.48 | 4.52 |
231 | 239 | 3.240606 | CTTGCGCCAGTTCCACGTG | 62.241 | 63.158 | 9.08 | 9.08 | 0.00 | 4.49 |
232 | 240 | 2.972505 | CTTGCGCCAGTTCCACGT | 60.973 | 61.111 | 4.18 | 0.00 | 0.00 | 4.49 |
240 | 248 | 2.420628 | TTTTGATCAACTTGCGCCAG | 57.579 | 45.000 | 7.89 | 5.76 | 0.00 | 4.85 |
265 | 273 | 2.490115 | GGCTGCGAGCAGTAGTATATCT | 59.510 | 50.000 | 23.79 | 0.00 | 44.75 | 1.98 |
339 | 363 | 3.464720 | TGAGATCCACTTGACCTCTCT | 57.535 | 47.619 | 0.00 | 0.00 | 34.73 | 3.10 |
340 | 364 | 3.118811 | CCTTGAGATCCACTTGACCTCTC | 60.119 | 52.174 | 0.00 | 0.00 | 34.33 | 3.20 |
341 | 365 | 2.836981 | CCTTGAGATCCACTTGACCTCT | 59.163 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
342 | 366 | 2.834549 | TCCTTGAGATCCACTTGACCTC | 59.165 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
343 | 367 | 2.907892 | TCCTTGAGATCCACTTGACCT | 58.092 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
357 | 381 | 0.108585 | AGCGCTTGTTCCTTCCTTGA | 59.891 | 50.000 | 2.64 | 0.00 | 0.00 | 3.02 |
469 | 497 | 0.178973 | AAACGGGGAGAAGTTTGGGG | 60.179 | 55.000 | 0.00 | 0.00 | 38.90 | 4.96 |
667 | 716 | 1.611491 | TGGTTTTCTTGCAATCCGGTC | 59.389 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
671 | 720 | 2.627699 | TCACCTGGTTTTCTTGCAATCC | 59.372 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
704 | 753 | 1.146041 | CGGGCGGGAAGATGATGAA | 59.854 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
706 | 755 | 2.281070 | CCGGGCGGGAAGATGATG | 60.281 | 66.667 | 4.88 | 0.00 | 38.47 | 3.07 |
707 | 756 | 2.325393 | GAACCGGGCGGGAAGATGAT | 62.325 | 60.000 | 18.95 | 0.00 | 39.97 | 2.45 |
738 | 811 | 2.028420 | TCAACGCATCAGGAATGGAG | 57.972 | 50.000 | 0.00 | 0.00 | 35.77 | 3.86 |
745 | 818 | 1.137675 | TGAGAGGATCAACGCATCAGG | 59.862 | 52.381 | 0.00 | 0.00 | 37.82 | 3.86 |
746 | 819 | 2.159128 | AGTGAGAGGATCAACGCATCAG | 60.159 | 50.000 | 0.00 | 0.00 | 40.43 | 2.90 |
748 | 821 | 2.468831 | GAGTGAGAGGATCAACGCATC | 58.531 | 52.381 | 0.00 | 0.00 | 40.43 | 3.91 |
749 | 822 | 1.202348 | CGAGTGAGAGGATCAACGCAT | 60.202 | 52.381 | 0.00 | 0.00 | 40.43 | 4.73 |
750 | 823 | 0.171231 | CGAGTGAGAGGATCAACGCA | 59.829 | 55.000 | 0.00 | 0.00 | 40.43 | 5.24 |
751 | 824 | 0.171455 | ACGAGTGAGAGGATCAACGC | 59.829 | 55.000 | 0.00 | 0.00 | 40.43 | 4.84 |
753 | 826 | 4.181309 | AGAAACGAGTGAGAGGATCAAC | 57.819 | 45.455 | 0.00 | 0.00 | 40.43 | 3.18 |
781 | 901 | 1.227205 | CATCCGCTCTGCTCCAGAC | 60.227 | 63.158 | 0.00 | 0.00 | 35.39 | 3.51 |
801 | 925 | 3.898517 | AAACAGAAAGAAACGCTAGGC | 57.101 | 42.857 | 0.00 | 0.00 | 0.00 | 3.93 |
804 | 928 | 9.485206 | ACTAATAGAAAACAGAAAGAAACGCTA | 57.515 | 29.630 | 0.00 | 0.00 | 0.00 | 4.26 |
889 | 1014 | 1.276421 | ACTAACCAGCGATGAACTGCT | 59.724 | 47.619 | 0.06 | 0.00 | 43.58 | 4.24 |
890 | 1015 | 1.661112 | GACTAACCAGCGATGAACTGC | 59.339 | 52.381 | 0.06 | 0.00 | 33.65 | 4.40 |
891 | 1016 | 2.959516 | TGACTAACCAGCGATGAACTG | 58.040 | 47.619 | 0.06 | 0.00 | 34.82 | 3.16 |
892 | 1017 | 3.244078 | TGTTGACTAACCAGCGATGAACT | 60.244 | 43.478 | 0.06 | 0.00 | 35.92 | 3.01 |
893 | 1018 | 3.064207 | TGTTGACTAACCAGCGATGAAC | 58.936 | 45.455 | 0.06 | 0.00 | 35.92 | 3.18 |
894 | 1019 | 3.394674 | TGTTGACTAACCAGCGATGAA | 57.605 | 42.857 | 0.06 | 0.00 | 35.92 | 2.57 |
895 | 1020 | 3.064207 | GTTGTTGACTAACCAGCGATGA | 58.936 | 45.455 | 0.06 | 0.00 | 35.92 | 2.92 |
898 | 1023 | 1.873698 | GGTTGTTGACTAACCAGCGA | 58.126 | 50.000 | 0.00 | 0.00 | 45.43 | 4.93 |
942 | 1082 | 4.134187 | GACGTCCATGTGCGTGCG | 62.134 | 66.667 | 14.96 | 2.27 | 41.70 | 5.34 |
952 | 1092 | 1.116536 | TACCAGGCACAAGACGTCCA | 61.117 | 55.000 | 13.01 | 0.00 | 0.00 | 4.02 |
954 | 1094 | 0.317479 | ACTACCAGGCACAAGACGTC | 59.683 | 55.000 | 7.70 | 7.70 | 0.00 | 4.34 |
958 | 1112 | 6.308015 | ACAAATATACTACCAGGCACAAGA | 57.692 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
962 | 1116 | 6.530181 | GCAAAAACAAATATACTACCAGGCAC | 59.470 | 38.462 | 0.00 | 0.00 | 0.00 | 5.01 |
965 | 1119 | 5.741982 | GCGCAAAAACAAATATACTACCAGG | 59.258 | 40.000 | 0.30 | 0.00 | 0.00 | 4.45 |
968 | 1122 | 4.203563 | GCGCGCAAAAACAAATATACTACC | 59.796 | 41.667 | 29.10 | 0.00 | 0.00 | 3.18 |
1263 | 1436 | 2.844122 | TCATGACGATCACGGTGTAG | 57.156 | 50.000 | 8.17 | 3.65 | 44.46 | 2.74 |
1481 | 1654 | 3.237741 | GAGAGGGATGGAGCGGGG | 61.238 | 72.222 | 0.00 | 0.00 | 0.00 | 5.73 |
1482 | 1655 | 3.237741 | GGAGAGGGATGGAGCGGG | 61.238 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
1483 | 1656 | 3.237741 | GGGAGAGGGATGGAGCGG | 61.238 | 72.222 | 0.00 | 0.00 | 0.00 | 5.52 |
1484 | 1657 | 2.123077 | AGGGAGAGGGATGGAGCG | 60.123 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
1485 | 1658 | 2.206536 | CGAGGGAGAGGGATGGAGC | 61.207 | 68.421 | 0.00 | 0.00 | 0.00 | 4.70 |
1520 | 1693 | 4.406326 | TGAATTGGGGGTGATTGATTGATG | 59.594 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
1603 | 1777 | 3.329114 | CGCAGAGCACGAATCAGTA | 57.671 | 52.632 | 0.00 | 0.00 | 0.00 | 2.74 |
1635 | 1813 | 3.142838 | GAACCCGCCTGCATGCAT | 61.143 | 61.111 | 22.97 | 3.67 | 0.00 | 3.96 |
1646 | 1824 | 1.375523 | CAAGAAGGACCCGAACCCG | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
1825 | 2003 | 5.309638 | TGGAAATGGAATCGTTTGTACTGA | 58.690 | 37.500 | 0.00 | 0.00 | 32.71 | 3.41 |
1829 | 2007 | 4.704540 | AGCATGGAAATGGAATCGTTTGTA | 59.295 | 37.500 | 0.00 | 0.00 | 32.71 | 2.41 |
1862 | 2045 | 0.329931 | ACGGAGAGAGCAGAGAAGGA | 59.670 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1890 | 2073 | 1.021390 | AAATCAGGAAGTGCGGCTCG | 61.021 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1914 | 2097 | 0.599204 | ACAGTAACAGCAACGACCCG | 60.599 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2037 | 2253 | 2.546373 | CGGTTAACAAGTGAGAACGGGA | 60.546 | 50.000 | 8.10 | 0.00 | 0.00 | 5.14 |
2040 | 2256 | 2.746269 | TCCGGTTAACAAGTGAGAACG | 58.254 | 47.619 | 8.10 | 0.00 | 0.00 | 3.95 |
2088 | 2306 | 7.222031 | CAGCATTGTGGAAAATGATATGACTTG | 59.778 | 37.037 | 1.22 | 0.00 | 39.46 | 3.16 |
2089 | 2307 | 7.123098 | TCAGCATTGTGGAAAATGATATGACTT | 59.877 | 33.333 | 1.22 | 0.00 | 39.46 | 3.01 |
2090 | 2308 | 6.604396 | TCAGCATTGTGGAAAATGATATGACT | 59.396 | 34.615 | 1.22 | 0.00 | 39.46 | 3.41 |
2091 | 2309 | 6.694411 | GTCAGCATTGTGGAAAATGATATGAC | 59.306 | 38.462 | 1.22 | 7.51 | 39.46 | 3.06 |
2092 | 2310 | 6.458615 | CGTCAGCATTGTGGAAAATGATATGA | 60.459 | 38.462 | 1.22 | 0.06 | 39.46 | 2.15 |
2093 | 2311 | 5.684184 | CGTCAGCATTGTGGAAAATGATATG | 59.316 | 40.000 | 1.22 | 0.00 | 39.46 | 1.78 |
2094 | 2312 | 5.221106 | CCGTCAGCATTGTGGAAAATGATAT | 60.221 | 40.000 | 1.22 | 0.00 | 39.46 | 1.63 |
2095 | 2313 | 4.096231 | CCGTCAGCATTGTGGAAAATGATA | 59.904 | 41.667 | 1.22 | 0.00 | 39.46 | 2.15 |
2120 | 2338 | 5.547181 | AGAAAATAAAACGCAGACTAGGC | 57.453 | 39.130 | 0.00 | 0.00 | 0.00 | 3.93 |
2182 | 2410 | 7.653647 | TGAAAGTGTTTGGTTATTAGCGATTT | 58.346 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
2191 | 2419 | 5.768164 | CCAGTACCTGAAAGTGTTTGGTTAT | 59.232 | 40.000 | 0.00 | 0.00 | 32.44 | 1.89 |
2310 | 2564 | 2.341846 | TCACGCAAAAGAAAGGGTCT | 57.658 | 45.000 | 0.00 | 0.00 | 38.69 | 3.85 |
2376 | 2645 | 5.328691 | TCTAAAGCGTTTTTCACACAGTTG | 58.671 | 37.500 | 1.60 | 0.00 | 0.00 | 3.16 |
2385 | 2655 | 4.615541 | CCATCCGTTTCTAAAGCGTTTTTC | 59.384 | 41.667 | 1.60 | 0.00 | 0.00 | 2.29 |
2676 | 3077 | 9.252326 | ATCATCGAGGATTTAAAACGGTGAACG | 62.252 | 40.741 | 19.01 | 0.00 | 44.76 | 3.95 |
2717 | 3118 | 2.333014 | GTCAGGCTGAAGTCGAAGAAG | 58.667 | 52.381 | 20.62 | 0.00 | 39.69 | 2.85 |
2858 | 3260 | 4.821589 | CTCGAGGACGCCTTGGCC | 62.822 | 72.222 | 3.91 | 0.00 | 35.77 | 5.36 |
2870 | 3272 | 2.172372 | GCCTGACATGCTGCTCGAG | 61.172 | 63.158 | 8.45 | 8.45 | 0.00 | 4.04 |
2871 | 3273 | 2.125391 | GCCTGACATGCTGCTCGA | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 4.04 |
2921 | 3323 | 3.896648 | ACAGCCAAATTCAGTAACACG | 57.103 | 42.857 | 0.00 | 0.00 | 0.00 | 4.49 |
2936 | 3340 | 2.262423 | AGTCCTTGACAAGAACAGCC | 57.738 | 50.000 | 16.99 | 0.00 | 34.60 | 4.85 |
2969 | 3373 | 1.267121 | GGAGGTGACAGTCTAAGCCA | 58.733 | 55.000 | 1.31 | 0.00 | 0.00 | 4.75 |
2970 | 3378 | 0.173708 | CGGAGGTGACAGTCTAAGCC | 59.826 | 60.000 | 1.31 | 0.00 | 0.00 | 4.35 |
2983 | 3391 | 0.252197 | GCCTGGACATAAACGGAGGT | 59.748 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3120 | 3528 | 6.021596 | CGAACAAATCTTGTACTGCCATAAC | 58.978 | 40.000 | 0.00 | 0.00 | 44.59 | 1.89 |
3127 | 3535 | 3.788434 | ACGCGAACAAATCTTGTACTG | 57.212 | 42.857 | 15.93 | 0.00 | 44.59 | 2.74 |
3166 | 3574 | 3.377439 | CATGCATGGTTCATTTCATCCG | 58.623 | 45.455 | 19.40 | 0.00 | 0.00 | 4.18 |
3167 | 3575 | 3.128349 | GCATGCATGGTTCATTTCATCC | 58.872 | 45.455 | 27.34 | 2.70 | 0.00 | 3.51 |
3452 | 3874 | 1.435577 | CCACCTTGCCGTAGTTGTAC | 58.564 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3824 | 4246 | 3.854459 | GCGAAGGCGAAGAAGGCG | 61.854 | 66.667 | 0.00 | 0.00 | 41.99 | 5.52 |
4126 | 4548 | 0.753479 | CTCTCTCTAGCTTCCGGGCA | 60.753 | 60.000 | 0.00 | 0.00 | 34.17 | 5.36 |
4174 | 4596 | 5.973651 | TTTGCTTCTTCTATATGCAGACG | 57.026 | 39.130 | 0.00 | 0.00 | 35.02 | 4.18 |
4220 | 4652 | 5.039333 | GGCGTCACTCTATGTAACGTAATT | 58.961 | 41.667 | 0.00 | 0.00 | 32.54 | 1.40 |
4386 | 4818 | 5.881447 | TCGAGATTCTCTAAGAAACGAAGG | 58.119 | 41.667 | 11.75 | 0.00 | 37.82 | 3.46 |
4419 | 4851 | 4.393062 | GGCGGTTTACCCTCTAAACTAAAC | 59.607 | 45.833 | 3.64 | 0.00 | 37.51 | 2.01 |
4420 | 4852 | 4.578871 | GGCGGTTTACCCTCTAAACTAAA | 58.421 | 43.478 | 3.64 | 0.00 | 37.51 | 1.85 |
4422 | 4854 | 2.166254 | CGGCGGTTTACCCTCTAAACTA | 59.834 | 50.000 | 0.00 | 0.00 | 37.51 | 2.24 |
4424 | 4856 | 1.066929 | TCGGCGGTTTACCCTCTAAAC | 60.067 | 52.381 | 7.21 | 0.00 | 36.86 | 2.01 |
4427 | 4859 | 0.323725 | AGTCGGCGGTTTACCCTCTA | 60.324 | 55.000 | 7.21 | 0.00 | 0.00 | 2.43 |
4428 | 4860 | 0.323725 | TAGTCGGCGGTTTACCCTCT | 60.324 | 55.000 | 7.21 | 0.00 | 0.00 | 3.69 |
4429 | 4861 | 0.749049 | ATAGTCGGCGGTTTACCCTC | 59.251 | 55.000 | 7.21 | 0.00 | 0.00 | 4.30 |
4430 | 4862 | 0.462789 | CATAGTCGGCGGTTTACCCT | 59.537 | 55.000 | 7.21 | 0.00 | 0.00 | 4.34 |
4432 | 4864 | 2.014335 | AACATAGTCGGCGGTTTACC | 57.986 | 50.000 | 7.21 | 0.00 | 0.00 | 2.85 |
4438 | 4870 | 3.777478 | TCTTCTAAAACATAGTCGGCGG | 58.223 | 45.455 | 7.21 | 0.00 | 0.00 | 6.13 |
4441 | 4873 | 5.168569 | TGTGCTCTTCTAAAACATAGTCGG | 58.831 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
4482 | 4921 | 4.760204 | CAGGGAATCGGTTAAAAAGACACT | 59.240 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
4483 | 4922 | 4.758165 | TCAGGGAATCGGTTAAAAAGACAC | 59.242 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
4484 | 4923 | 4.975631 | TCAGGGAATCGGTTAAAAAGACA | 58.024 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
4485 | 4924 | 5.472478 | AGTTCAGGGAATCGGTTAAAAAGAC | 59.528 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4486 | 4925 | 5.627135 | AGTTCAGGGAATCGGTTAAAAAGA | 58.373 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
4487 | 4926 | 5.959618 | AGTTCAGGGAATCGGTTAAAAAG | 57.040 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
4498 | 4937 | 8.990163 | TTTTTACTCTGTTAAGTTCAGGGAAT | 57.010 | 30.769 | 0.00 | 0.00 | 36.93 | 3.01 |
4502 | 4941 | 8.888579 | TCTCTTTTTACTCTGTTAAGTTCAGG | 57.111 | 34.615 | 0.00 | 0.00 | 34.15 | 3.86 |
4514 | 4953 | 9.796120 | CTCGAGTCAAATATCTCTTTTTACTCT | 57.204 | 33.333 | 3.62 | 0.00 | 31.97 | 3.24 |
4520 | 4959 | 9.658799 | TCATTTCTCGAGTCAAATATCTCTTTT | 57.341 | 29.630 | 13.13 | 0.00 | 0.00 | 2.27 |
4523 | 4962 | 8.420222 | ACATCATTTCTCGAGTCAAATATCTCT | 58.580 | 33.333 | 13.13 | 0.00 | 0.00 | 3.10 |
4524 | 4963 | 8.586570 | ACATCATTTCTCGAGTCAAATATCTC | 57.413 | 34.615 | 13.13 | 0.00 | 0.00 | 2.75 |
4525 | 4964 | 8.954950 | AACATCATTTCTCGAGTCAAATATCT | 57.045 | 30.769 | 13.13 | 0.00 | 0.00 | 1.98 |
4527 | 4966 | 8.954950 | AGAACATCATTTCTCGAGTCAAATAT | 57.045 | 30.769 | 13.13 | 4.59 | 29.24 | 1.28 |
4528 | 4967 | 9.302345 | GTAGAACATCATTTCTCGAGTCAAATA | 57.698 | 33.333 | 13.13 | 2.64 | 37.09 | 1.40 |
4529 | 4968 | 7.278868 | GGTAGAACATCATTTCTCGAGTCAAAT | 59.721 | 37.037 | 13.13 | 9.19 | 37.09 | 2.32 |
4532 | 4971 | 5.185056 | TGGTAGAACATCATTTCTCGAGTCA | 59.815 | 40.000 | 13.13 | 0.05 | 37.09 | 3.41 |
4533 | 4972 | 5.651530 | TGGTAGAACATCATTTCTCGAGTC | 58.348 | 41.667 | 13.13 | 0.00 | 37.09 | 3.36 |
4534 | 4973 | 5.661056 | TGGTAGAACATCATTTCTCGAGT | 57.339 | 39.130 | 13.13 | 0.00 | 37.09 | 4.18 |
4535 | 4974 | 5.050499 | GCATGGTAGAACATCATTTCTCGAG | 60.050 | 44.000 | 5.93 | 5.93 | 37.09 | 4.04 |
4575 | 5014 | 3.555966 | ACAAATGGATGGCTTAGCTACC | 58.444 | 45.455 | 3.59 | 6.09 | 0.00 | 3.18 |
4578 | 5017 | 5.104360 | TCTCTAACAAATGGATGGCTTAGCT | 60.104 | 40.000 | 3.59 | 0.00 | 0.00 | 3.32 |
4605 | 5044 | 4.694760 | AGCTAGAATATGCATGTGTCCA | 57.305 | 40.909 | 10.16 | 0.00 | 0.00 | 4.02 |
4617 | 5056 | 5.753438 | CCGTGAAATACAGCAAGCTAGAATA | 59.247 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
4724 | 5167 | 0.536233 | TGGTGAACGTGTTGGGATGG | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4728 | 5171 | 0.105964 | TCTCTGGTGAACGTGTTGGG | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
4729 | 5172 | 1.948104 | TTCTCTGGTGAACGTGTTGG | 58.052 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4730 | 5173 | 2.349817 | GCATTCTCTGGTGAACGTGTTG | 60.350 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4731 | 5174 | 1.873591 | GCATTCTCTGGTGAACGTGTT | 59.126 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
4732 | 5175 | 1.202639 | TGCATTCTCTGGTGAACGTGT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
4733 | 5176 | 1.195448 | GTGCATTCTCTGGTGAACGTG | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
4734 | 5177 | 1.202639 | TGTGCATTCTCTGGTGAACGT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
4735 | 5178 | 1.511850 | TGTGCATTCTCTGGTGAACG | 58.488 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
4736 | 5179 | 3.988379 | TTTGTGCATTCTCTGGTGAAC | 57.012 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
4737 | 5180 | 3.243501 | GCTTTTGTGCATTCTCTGGTGAA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
4738 | 5181 | 2.294233 | GCTTTTGTGCATTCTCTGGTGA | 59.706 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4739 | 5182 | 2.295349 | AGCTTTTGTGCATTCTCTGGTG | 59.705 | 45.455 | 0.00 | 0.00 | 34.99 | 4.17 |
4740 | 5183 | 2.590821 | AGCTTTTGTGCATTCTCTGGT | 58.409 | 42.857 | 0.00 | 0.00 | 34.99 | 4.00 |
4744 | 5187 | 4.367386 | AGCATAGCTTTTGTGCATTCTC | 57.633 | 40.909 | 13.23 | 0.00 | 45.46 | 2.87 |
4854 | 5311 | 7.205297 | CGGATGCATCTTCTATTGGAATTTTT | 58.795 | 34.615 | 25.28 | 0.00 | 33.01 | 1.94 |
4896 | 5353 | 6.547141 | TGATCTTGTTTGAAAGACCTTGTCAT | 59.453 | 34.615 | 0.00 | 0.00 | 38.95 | 3.06 |
4949 | 5406 | 7.743520 | TTACCGTGTTTCAAACTTTGATTTC | 57.256 | 32.000 | 5.03 | 0.92 | 39.84 | 2.17 |
5016 | 5473 | 7.775561 | ACCTTTTAAACAAGATCAGACAAGAGT | 59.224 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
5017 | 5474 | 8.159344 | ACCTTTTAAACAAGATCAGACAAGAG | 57.841 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
5050 | 5509 | 0.323269 | TTGCATCTTTGGGATCCGCA | 60.323 | 50.000 | 5.45 | 4.82 | 33.42 | 5.69 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.