Multiple sequence alignment - TraesCS2A01G389600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G389600 chr2A 100.000 5027 0 0 1 5027 638304584 638309610 0.000000e+00 9284.0
1 TraesCS2A01G389600 chr2A 98.561 139 2 0 1735 1873 638306180 638306318 3.890000e-61 246.0
2 TraesCS2A01G389600 chr2A 98.561 139 2 0 1597 1735 638306318 638306456 3.890000e-61 246.0
3 TraesCS2A01G389600 chr2D 97.939 3299 59 5 1735 5027 495404423 495401128 0.000000e+00 5707.0
4 TraesCS2A01G389600 chr2D 92.728 1774 74 20 1 1735 495406042 495404285 0.000000e+00 2510.0
5 TraesCS2A01G389600 chr2D 100.000 29 0 0 1252 1280 495404681 495404653 3.000000e-03 54.7
6 TraesCS2A01G389600 chr2B 96.814 3296 72 11 1735 5027 583068006 583064741 0.000000e+00 5474.0
7 TraesCS2A01G389600 chr2B 92.225 926 51 8 822 1735 583068784 583067868 0.000000e+00 1291.0
8 TraesCS2A01G389600 chr2B 89.484 523 30 13 240 742 583069672 583069155 5.490000e-179 638.0
9 TraesCS2A01G389600 chr2B 94.792 192 10 0 1 192 583070153 583069962 2.940000e-77 300.0
10 TraesCS2A01G389600 chr2B 84.397 141 13 2 1079 1219 762867262 762867131 4.080000e-26 130.0
11 TraesCS2A01G389600 chr2B 100.000 29 0 0 1252 1280 583068264 583068236 3.000000e-03 54.7
12 TraesCS2A01G389600 chr7D 91.701 482 27 4 737 1215 100648851 100649322 0.000000e+00 656.0
13 TraesCS2A01G389600 chr7D 90.000 90 9 0 4717 4806 486060133 486060044 3.180000e-22 117.0
14 TraesCS2A01G389600 chr7D 89.655 87 8 1 4735 4821 148142072 148141987 5.320000e-20 110.0
15 TraesCS2A01G389600 chr7D 84.848 66 9 1 4646 4710 205242406 205242471 1.170000e-06 65.8
16 TraesCS2A01G389600 chr6D 91.060 481 31 4 737 1215 262759910 262760380 1.530000e-179 640.0
17 TraesCS2A01G389600 chr6D 89.848 197 10 2 1019 1215 159023492 159023306 1.400000e-60 244.0
18 TraesCS2A01G389600 chr4A 76.101 318 50 14 4501 4805 516444766 516444462 5.250000e-30 143.0
19 TraesCS2A01G389600 chr5D 88.679 106 7 4 4710 4813 44603278 44603380 1.900000e-24 124.0
20 TraesCS2A01G389600 chr3D 87.619 105 10 2 4713 4815 3002965 3003068 8.840000e-23 119.0
21 TraesCS2A01G389600 chr5B 89.011 91 8 2 4724 4813 43984342 43984431 1.480000e-20 111.0
22 TraesCS2A01G389600 chr5B 86.667 60 8 0 4651 4710 685214602 685214543 3.250000e-07 67.6
23 TraesCS2A01G389600 chrUn 87.234 94 12 0 4713 4806 32136901 32136994 1.910000e-19 108.0
24 TraesCS2A01G389600 chr5A 77.586 174 26 9 4644 4813 701990871 701991035 5.360000e-15 93.5
25 TraesCS2A01G389600 chr4B 81.250 128 13 6 4594 4710 2210903 2210776 5.360000e-15 93.5
26 TraesCS2A01G389600 chr4B 81.250 128 13 6 4594 4710 2240893 2240766 5.360000e-15 93.5
27 TraesCS2A01G389600 chr4D 80.769 130 12 7 4593 4710 1643099 1642971 6.930000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G389600 chr2A 638304584 638309610 5026 False 3258.666667 9284 99.040667 1 5027 3 chr2A.!!$F1 5026
1 TraesCS2A01G389600 chr2D 495401128 495406042 4914 True 2757.233333 5707 96.889000 1 5027 3 chr2D.!!$R1 5026
2 TraesCS2A01G389600 chr2B 583064741 583070153 5412 True 1551.540000 5474 94.663000 1 5027 5 chr2B.!!$R2 5026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 787 0.109086 CAGTTCCGCTCATCAGACGT 60.109 55.0 0.0 0.0 0.00 4.34 F
1651 2242 0.304705 GGATAACAATGCTCGCACCG 59.695 55.0 0.0 0.0 0.00 4.94 F
1713 2304 0.032615 TTATGGGTGATGGGTTGGCC 60.033 55.0 0.0 0.0 0.00 5.36 F
1749 2340 0.036952 ATTGCAGAGTGACCACGAGG 60.037 55.0 0.0 0.0 42.21 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 2285 0.032615 GGCCAACCCATCACCCATAA 60.033 55.000 0.0 0.0 0.0 1.90 R
3348 3942 0.839946 AGGCACACAGTTTGGAGTCT 59.160 50.000 0.0 0.0 0.0 3.24 R
3354 3948 2.032054 CACTACACAGGCACACAGTTTG 59.968 50.000 0.0 0.0 0.0 2.93 R
4090 4684 7.606456 TCATACTTATTGGACACTGAAAAGGTC 59.394 37.037 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 201 0.179009 ATCCAATGGCCAGTCATCCG 60.179 55.000 13.05 0.00 0.00 4.18
225 226 4.546674 CCCCAAAATAGTAGGCCTTGATT 58.453 43.478 12.58 5.53 0.00 2.57
266 509 6.091441 ACAAACGAGTCTCATTTGAATCTAGC 59.909 38.462 24.14 0.00 36.91 3.42
344 587 4.130118 GTCTGAATTTATCTGACCGCCAT 58.870 43.478 4.66 0.00 45.99 4.40
351 594 8.729756 TGAATTTATCTGACCGCCATATTTATG 58.270 33.333 0.00 0.00 0.00 1.90
352 595 6.494893 TTTATCTGACCGCCATATTTATGC 57.505 37.500 0.00 0.00 32.40 3.14
376 619 2.614829 TCTATAAAAGTCCTGCGGCC 57.385 50.000 0.00 0.00 0.00 6.13
400 643 1.017177 CAATCCGAACCGAAGCCGAA 61.017 55.000 0.00 0.00 38.22 4.30
401 644 0.739813 AATCCGAACCGAAGCCGAAG 60.740 55.000 0.00 0.00 38.22 3.79
465 712 1.890489 ACAAATTCGTAAACCAGCCCC 59.110 47.619 0.00 0.00 0.00 5.80
476 723 1.828224 CCAGCCCCGAATTTAGCCC 60.828 63.158 0.00 0.00 0.00 5.19
477 724 1.828224 CAGCCCCGAATTTAGCCCC 60.828 63.158 0.00 0.00 0.00 5.80
478 725 2.905373 GCCCCGAATTTAGCCCCG 60.905 66.667 0.00 0.00 0.00 5.73
479 726 2.912714 CCCCGAATTTAGCCCCGA 59.087 61.111 0.00 0.00 0.00 5.14
480 727 1.225148 CCCCGAATTTAGCCCCGAA 59.775 57.895 0.00 0.00 0.00 4.30
481 728 0.179001 CCCCGAATTTAGCCCCGAAT 60.179 55.000 0.00 0.00 0.00 3.34
482 729 1.687563 CCCGAATTTAGCCCCGAATT 58.312 50.000 0.00 0.00 0.00 2.17
514 772 0.460987 GACCCAGTTCCGCTCATCAG 60.461 60.000 0.00 0.00 0.00 2.90
518 787 0.109086 CAGTTCCGCTCATCAGACGT 60.109 55.000 0.00 0.00 0.00 4.34
523 792 1.215382 CGCTCATCAGACGTGGGAA 59.785 57.895 0.00 0.00 0.00 3.97
527 796 0.613260 TCATCAGACGTGGGAAAGGG 59.387 55.000 0.00 0.00 0.00 3.95
664 935 2.980233 GCGGTTGCTGTGCTCCTT 60.980 61.111 0.00 0.00 38.39 3.36
925 1508 4.056125 CGTGCTGAGACCTGGCGA 62.056 66.667 0.00 0.00 0.00 5.54
943 1527 2.678336 GCGAGATTTGTTTCCTCCGAAT 59.322 45.455 0.00 0.00 0.00 3.34
950 1534 0.322546 GTTTCCTCCGAATGCAGGGT 60.323 55.000 0.00 0.00 0.00 4.34
952 1536 1.910580 TTCCTCCGAATGCAGGGTCC 61.911 60.000 0.00 0.00 0.00 4.46
1012 1597 2.833582 GCGAGATGGAGACCGGGA 60.834 66.667 6.32 0.00 0.00 5.14
1176 1767 2.909965 GGCGGTTCTGGCACCAAA 60.910 61.111 0.29 0.00 36.49 3.28
1180 1771 1.652563 GGTTCTGGCACCAAACGTC 59.347 57.895 0.00 0.00 36.73 4.34
1189 1780 0.320421 CACCAAACGTCCCAGATCGT 60.320 55.000 0.00 0.00 42.12 3.73
1302 1893 2.892425 GATGGGGAGAACAGCGCG 60.892 66.667 0.00 0.00 0.00 6.86
1369 1960 1.741770 AGCGCGACCATGAAGAACC 60.742 57.895 12.10 0.00 0.00 3.62
1403 1994 1.742268 GGATTGCCTGTTGAGAAGAGC 59.258 52.381 0.00 0.00 0.00 4.09
1444 2035 1.913419 AGAGCTCCGATGGGGTTAAAA 59.087 47.619 10.93 0.00 37.00 1.52
1552 2143 7.103641 TGCTATTAAAATGGAGAACGACTCTT 58.896 34.615 12.23 4.15 44.37 2.85
1637 2228 5.480058 TCCAATGGGGAGAAAATGGATAA 57.520 39.130 0.00 0.00 42.15 1.75
1638 2229 5.208121 TCCAATGGGGAGAAAATGGATAAC 58.792 41.667 0.00 0.00 42.15 1.89
1639 2230 4.961730 CCAATGGGGAGAAAATGGATAACA 59.038 41.667 0.00 0.00 40.01 2.41
1640 2231 5.424895 CCAATGGGGAGAAAATGGATAACAA 59.575 40.000 0.00 0.00 40.01 2.83
1641 2232 6.100134 CCAATGGGGAGAAAATGGATAACAAT 59.900 38.462 0.00 0.00 40.01 2.71
1642 2233 6.736110 ATGGGGAGAAAATGGATAACAATG 57.264 37.500 0.00 0.00 0.00 2.82
1643 2234 4.405358 TGGGGAGAAAATGGATAACAATGC 59.595 41.667 0.00 0.00 0.00 3.56
1644 2235 4.651045 GGGGAGAAAATGGATAACAATGCT 59.349 41.667 0.00 0.00 0.00 3.79
1645 2236 5.221322 GGGGAGAAAATGGATAACAATGCTC 60.221 44.000 0.00 0.00 0.00 4.26
1646 2237 5.506317 GGGAGAAAATGGATAACAATGCTCG 60.506 44.000 0.00 0.00 29.54 5.03
1647 2238 4.925068 AGAAAATGGATAACAATGCTCGC 58.075 39.130 0.00 0.00 0.00 5.03
1648 2239 4.398988 AGAAAATGGATAACAATGCTCGCA 59.601 37.500 0.00 0.00 0.00 5.10
1649 2240 3.698029 AATGGATAACAATGCTCGCAC 57.302 42.857 0.00 0.00 0.00 5.34
1650 2241 1.378531 TGGATAACAATGCTCGCACC 58.621 50.000 0.00 0.00 0.00 5.01
1651 2242 0.304705 GGATAACAATGCTCGCACCG 59.695 55.000 0.00 0.00 0.00 4.94
1652 2243 0.304705 GATAACAATGCTCGCACCGG 59.695 55.000 0.00 0.00 0.00 5.28
1653 2244 0.392461 ATAACAATGCTCGCACCGGT 60.392 50.000 0.00 0.00 0.00 5.28
1654 2245 1.295357 TAACAATGCTCGCACCGGTG 61.295 55.000 30.66 30.66 0.00 4.94
1664 2255 4.395519 CACCGGTGCTGAAATGGA 57.604 55.556 24.02 0.00 0.00 3.41
1665 2256 2.872408 CACCGGTGCTGAAATGGAT 58.128 52.632 24.02 0.00 0.00 3.41
1666 2257 1.176527 CACCGGTGCTGAAATGGATT 58.823 50.000 24.02 0.00 0.00 3.01
1667 2258 1.135315 CACCGGTGCTGAAATGGATTG 60.135 52.381 24.02 0.00 0.00 2.67
1668 2259 1.176527 CCGGTGCTGAAATGGATTGT 58.823 50.000 0.00 0.00 0.00 2.71
1669 2260 1.135315 CCGGTGCTGAAATGGATTGTG 60.135 52.381 0.00 0.00 0.00 3.33
1670 2261 1.135315 CGGTGCTGAAATGGATTGTGG 60.135 52.381 0.00 0.00 0.00 4.17
1671 2262 1.895131 GGTGCTGAAATGGATTGTGGT 59.105 47.619 0.00 0.00 0.00 4.16
1672 2263 2.299867 GGTGCTGAAATGGATTGTGGTT 59.700 45.455 0.00 0.00 0.00 3.67
1673 2264 3.244181 GGTGCTGAAATGGATTGTGGTTT 60.244 43.478 0.00 0.00 0.00 3.27
1674 2265 3.742369 GTGCTGAAATGGATTGTGGTTTG 59.258 43.478 0.00 0.00 0.00 2.93
1675 2266 3.244146 TGCTGAAATGGATTGTGGTTTGG 60.244 43.478 0.00 0.00 0.00 3.28
1676 2267 3.865684 GCTGAAATGGATTGTGGTTTGGG 60.866 47.826 0.00 0.00 0.00 4.12
1677 2268 2.038295 TGAAATGGATTGTGGTTTGGGC 59.962 45.455 0.00 0.00 0.00 5.36
1678 2269 1.727062 AATGGATTGTGGTTTGGGCA 58.273 45.000 0.00 0.00 0.00 5.36
1679 2270 1.727062 ATGGATTGTGGTTTGGGCAA 58.273 45.000 0.00 0.00 0.00 4.52
1680 2271 1.047002 TGGATTGTGGTTTGGGCAAG 58.953 50.000 0.00 0.00 0.00 4.01
1681 2272 1.047801 GGATTGTGGTTTGGGCAAGT 58.952 50.000 0.00 0.00 0.00 3.16
1682 2273 1.000843 GGATTGTGGTTTGGGCAAGTC 59.999 52.381 0.00 0.00 0.00 3.01
1683 2274 1.000843 GATTGTGGTTTGGGCAAGTCC 59.999 52.381 0.00 0.00 0.00 3.85
1684 2275 0.324738 TTGTGGTTTGGGCAAGTCCA 60.325 50.000 0.00 0.00 36.21 4.02
1685 2276 0.754957 TGTGGTTTGGGCAAGTCCAG 60.755 55.000 0.00 0.00 38.17 3.86
1686 2277 1.832167 TGGTTTGGGCAAGTCCAGC 60.832 57.895 0.00 0.00 38.17 4.85
1687 2278 1.531602 GGTTTGGGCAAGTCCAGCT 60.532 57.895 0.00 0.00 38.17 4.24
1688 2279 1.662044 GTTTGGGCAAGTCCAGCTG 59.338 57.895 6.78 6.78 38.17 4.24
1689 2280 2.202395 TTTGGGCAAGTCCAGCTGC 61.202 57.895 8.66 0.00 38.17 5.25
1690 2281 2.925416 TTTGGGCAAGTCCAGCTGCA 62.925 55.000 8.66 0.00 38.17 4.41
1691 2282 2.598394 GGGCAAGTCCAGCTGCAA 60.598 61.111 8.66 0.00 36.21 4.08
1692 2283 1.980772 GGGCAAGTCCAGCTGCAAT 60.981 57.895 8.66 0.00 36.21 3.56
1693 2284 0.680921 GGGCAAGTCCAGCTGCAATA 60.681 55.000 8.66 0.00 36.21 1.90
1694 2285 1.396653 GGCAAGTCCAGCTGCAATAT 58.603 50.000 8.66 0.00 34.01 1.28
1695 2286 1.753073 GGCAAGTCCAGCTGCAATATT 59.247 47.619 8.66 0.00 34.01 1.28
1696 2287 2.951642 GGCAAGTCCAGCTGCAATATTA 59.048 45.455 8.66 0.00 34.01 0.98
1697 2288 3.571401 GGCAAGTCCAGCTGCAATATTAT 59.429 43.478 8.66 0.00 34.01 1.28
1698 2289 4.543692 GCAAGTCCAGCTGCAATATTATG 58.456 43.478 8.66 0.00 0.00 1.90
1699 2290 4.558095 GCAAGTCCAGCTGCAATATTATGG 60.558 45.833 8.66 0.00 0.00 2.74
1700 2291 3.759581 AGTCCAGCTGCAATATTATGGG 58.240 45.455 8.66 0.00 0.00 4.00
1701 2292 3.139025 AGTCCAGCTGCAATATTATGGGT 59.861 43.478 8.66 0.00 0.00 4.51
1702 2293 3.254166 GTCCAGCTGCAATATTATGGGTG 59.746 47.826 8.66 0.00 0.00 4.61
1703 2294 3.138098 TCCAGCTGCAATATTATGGGTGA 59.862 43.478 8.66 0.00 0.00 4.02
1704 2295 4.084287 CCAGCTGCAATATTATGGGTGAT 58.916 43.478 8.66 0.00 0.00 3.06
1705 2296 4.082408 CCAGCTGCAATATTATGGGTGATG 60.082 45.833 8.66 0.00 0.00 3.07
1706 2297 4.082408 CAGCTGCAATATTATGGGTGATGG 60.082 45.833 0.00 0.00 0.00 3.51
1707 2298 3.194116 GCTGCAATATTATGGGTGATGGG 59.806 47.826 0.00 0.00 0.00 4.00
1708 2299 4.410099 CTGCAATATTATGGGTGATGGGT 58.590 43.478 0.00 0.00 0.00 4.51
1709 2300 4.813809 TGCAATATTATGGGTGATGGGTT 58.186 39.130 0.00 0.00 0.00 4.11
1710 2301 4.588106 TGCAATATTATGGGTGATGGGTTG 59.412 41.667 0.00 0.00 0.00 3.77
1711 2302 4.021192 GCAATATTATGGGTGATGGGTTGG 60.021 45.833 0.00 0.00 0.00 3.77
1712 2303 2.086610 ATTATGGGTGATGGGTTGGC 57.913 50.000 0.00 0.00 0.00 4.52
1713 2304 0.032615 TTATGGGTGATGGGTTGGCC 60.033 55.000 0.00 0.00 0.00 5.36
1714 2305 1.217747 TATGGGTGATGGGTTGGCCA 61.218 55.000 0.00 0.00 36.17 5.36
1715 2306 2.104359 ATGGGTGATGGGTTGGCCAA 62.104 55.000 16.05 16.05 36.17 4.52
1716 2307 2.282783 GGGTGATGGGTTGGCCAAC 61.283 63.158 36.03 36.03 40.45 3.77
1717 2308 2.635443 GGTGATGGGTTGGCCAACG 61.635 63.158 35.92 0.00 42.02 4.10
1723 2314 4.347453 GGTTGGCCAACGCTGCTG 62.347 66.667 35.92 0.00 42.02 4.41
1724 2315 4.347453 GTTGGCCAACGCTGCTGG 62.347 66.667 31.73 3.69 36.99 4.85
1725 2316 4.577677 TTGGCCAACGCTGCTGGA 62.578 61.111 16.05 0.00 35.85 3.86
1728 2319 4.704833 GCCAACGCTGCTGGAGGA 62.705 66.667 11.72 0.00 35.85 3.71
1729 2320 2.435586 CCAACGCTGCTGGAGGAG 60.436 66.667 1.88 0.00 35.85 3.69
1730 2321 2.659016 CAACGCTGCTGGAGGAGA 59.341 61.111 0.00 0.00 35.31 3.71
1731 2322 1.220206 CAACGCTGCTGGAGGAGAT 59.780 57.895 0.00 0.00 35.31 2.75
1732 2323 0.392193 CAACGCTGCTGGAGGAGATT 60.392 55.000 0.00 0.00 35.31 2.40
1733 2324 0.392193 AACGCTGCTGGAGGAGATTG 60.392 55.000 0.00 0.00 35.31 2.67
1734 2325 2.178890 CGCTGCTGGAGGAGATTGC 61.179 63.158 0.00 0.00 35.31 3.56
1735 2326 1.077930 GCTGCTGGAGGAGATTGCA 60.078 57.895 0.00 0.00 35.31 4.08
1736 2327 3.082165 CTGCTGGAGGAGATTGCAG 57.918 57.895 0.00 0.00 43.71 4.41
1737 2328 2.687781 TGCTGGAGGAGATTGCAGA 58.312 52.632 0.00 0.00 38.65 4.26
1738 2329 0.540454 TGCTGGAGGAGATTGCAGAG 59.460 55.000 0.00 0.00 38.65 3.35
1739 2330 0.540923 GCTGGAGGAGATTGCAGAGT 59.459 55.000 0.00 0.00 38.65 3.24
1740 2331 1.743091 GCTGGAGGAGATTGCAGAGTG 60.743 57.143 0.00 0.00 38.65 3.51
1741 2332 1.829849 CTGGAGGAGATTGCAGAGTGA 59.170 52.381 0.00 0.00 38.65 3.41
1742 2333 1.552337 TGGAGGAGATTGCAGAGTGAC 59.448 52.381 0.00 0.00 0.00 3.67
1743 2334 1.134551 GGAGGAGATTGCAGAGTGACC 60.135 57.143 0.00 0.00 0.00 4.02
1744 2335 1.552337 GAGGAGATTGCAGAGTGACCA 59.448 52.381 0.00 0.00 0.00 4.02
1745 2336 1.277557 AGGAGATTGCAGAGTGACCAC 59.722 52.381 0.00 0.00 0.00 4.16
1746 2337 1.354040 GAGATTGCAGAGTGACCACG 58.646 55.000 0.00 0.00 36.20 4.94
1747 2338 0.969149 AGATTGCAGAGTGACCACGA 59.031 50.000 0.00 0.00 36.20 4.35
1748 2339 1.067283 AGATTGCAGAGTGACCACGAG 60.067 52.381 0.00 0.00 36.20 4.18
1749 2340 0.036952 ATTGCAGAGTGACCACGAGG 60.037 55.000 0.00 0.00 42.21 4.63
1750 2341 1.112916 TTGCAGAGTGACCACGAGGA 61.113 55.000 5.68 0.00 38.69 3.71
1751 2342 1.214062 GCAGAGTGACCACGAGGAG 59.786 63.158 5.68 0.00 38.69 3.69
1752 2343 1.214062 CAGAGTGACCACGAGGAGC 59.786 63.158 5.68 0.00 38.69 4.70
1753 2344 1.228583 AGAGTGACCACGAGGAGCA 60.229 57.895 5.68 0.15 38.69 4.26
1754 2345 1.080434 GAGTGACCACGAGGAGCAC 60.080 63.158 16.85 16.85 41.06 4.40
1755 2346 2.048127 GTGACCACGAGGAGCACC 60.048 66.667 5.68 0.00 37.59 5.01
1756 2347 2.523168 TGACCACGAGGAGCACCA 60.523 61.111 5.68 0.00 38.69 4.17
1757 2348 2.137528 TGACCACGAGGAGCACCAA 61.138 57.895 5.68 0.00 38.69 3.67
1758 2349 1.296715 GACCACGAGGAGCACCAAT 59.703 57.895 5.68 0.00 38.69 3.16
1759 2350 1.003355 ACCACGAGGAGCACCAATG 60.003 57.895 5.68 0.00 38.69 2.82
1760 2351 1.746615 CCACGAGGAGCACCAATGG 60.747 63.158 2.07 0.00 38.94 3.16
1761 2352 1.746615 CACGAGGAGCACCAATGGG 60.747 63.158 3.55 0.00 38.94 4.00
1762 2353 2.124570 CGAGGAGCACCAATGGGG 60.125 66.667 3.55 0.00 44.81 4.96
1763 2354 2.669133 CGAGGAGCACCAATGGGGA 61.669 63.158 5.31 0.00 41.15 4.81
2029 2620 0.244994 CTGTGAGTCTGAGGGTTCGG 59.755 60.000 0.00 0.00 0.00 4.30
2054 2645 2.345991 CCGTGTGACCGGGAATGT 59.654 61.111 6.32 0.00 44.32 2.71
2201 2792 2.658285 TCCTGGAAGCAATGCTAATGG 58.342 47.619 8.68 9.02 38.25 3.16
2382 2973 2.179427 AGTACTGTGAGGTGCTATGCA 58.821 47.619 0.00 0.00 35.60 3.96
2976 3567 3.181491 CCAAAACACCAGTTCGTGTCATT 60.181 43.478 0.00 0.00 46.19 2.57
3141 3735 5.009010 AGGTCAGAAACACATTGACATTGAC 59.991 40.000 4.40 0.00 42.24 3.18
3348 3942 2.449031 CTTGTGTAGGCGGGTGCTCA 62.449 60.000 0.00 0.00 42.25 4.26
3354 3948 4.459089 GGCGGGTGCTCAGACTCC 62.459 72.222 0.00 0.00 42.25 3.85
3378 3972 2.138320 CTGTGTGCCTGTGTAGTGAAG 58.862 52.381 0.00 0.00 0.00 3.02
3489 4083 5.958380 TCCTCCTACATGTCATAACAGAGTT 59.042 40.000 0.00 0.00 39.20 3.01
4090 4684 7.541162 TGTCATTGCCATTAATTCTTCTTCTG 58.459 34.615 0.00 0.00 0.00 3.02
4115 4709 7.390440 TGACCTTTTCAGTGTCCAATAAGTATG 59.610 37.037 0.00 0.00 0.00 2.39
4261 4856 9.754382 AATTCTTGGACATAATGCATCAATTAC 57.246 29.630 0.00 0.00 0.00 1.89
4406 5002 2.965831 AGCGGAGATTACTGGAGCATTA 59.034 45.455 0.00 0.00 0.00 1.90
4467 5063 6.670027 AGAAAACTAGAGATGATACCCTGTGT 59.330 38.462 0.00 0.00 0.00 3.72
4512 5108 7.437862 TGCAACTGTTTTAATGAGATTTGGTTC 59.562 33.333 0.00 0.00 0.00 3.62
4800 5396 5.312443 AGAGTTAGTGGGGGTCAACTATTTT 59.688 40.000 0.00 0.00 31.57 1.82
4821 5417 8.924511 ATTTTGGTATGTAGGATGTAGGATTG 57.075 34.615 0.00 0.00 0.00 2.67
4978 5576 8.032451 TGGATAACAACTATTTGCCTTTAAAGC 58.968 33.333 9.86 6.24 36.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 215 4.086457 GGAAAAGGTTCAATCAAGGCCTA 58.914 43.478 5.16 0.00 35.25 3.93
225 226 6.095720 ACTCGTTTGTTAATGGAAAAGGTTCA 59.904 34.615 0.00 0.00 35.25 3.18
266 509 3.053896 GCCACGGACGGAAAAGGG 61.054 66.667 0.00 0.00 0.00 3.95
295 538 7.544217 TCGACTTGAACATCGATTTAATCTCAA 59.456 33.333 0.00 5.19 42.18 3.02
296 539 7.033185 TCGACTTGAACATCGATTTAATCTCA 58.967 34.615 0.00 0.00 42.18 3.27
299 542 7.221067 AGACTCGACTTGAACATCGATTTAATC 59.779 37.037 0.00 0.00 45.63 1.75
300 543 7.009631 CAGACTCGACTTGAACATCGATTTAAT 59.990 37.037 0.00 0.00 45.63 1.40
301 544 6.308041 CAGACTCGACTTGAACATCGATTTAA 59.692 38.462 0.00 0.00 45.63 1.52
302 545 5.800438 CAGACTCGACTTGAACATCGATTTA 59.200 40.000 0.00 0.00 45.63 1.40
351 594 3.251004 CGCAGGACTTTTATAGAATGGGC 59.749 47.826 0.00 0.00 0.00 5.36
376 619 1.369091 CTTCGGTTCGGATTGCTGGG 61.369 60.000 0.00 0.00 0.00 4.45
400 643 1.555967 GACTGCCACTTCCTCTCTCT 58.444 55.000 0.00 0.00 0.00 3.10
401 644 0.534873 GGACTGCCACTTCCTCTCTC 59.465 60.000 0.00 0.00 0.00 3.20
476 723 4.318546 GGGTCGATTGATTTACGAATTCGG 60.319 45.833 29.79 13.35 44.95 4.30
477 724 4.269123 TGGGTCGATTGATTTACGAATTCG 59.731 41.667 25.64 25.64 46.33 3.34
478 725 5.293569 ACTGGGTCGATTGATTTACGAATTC 59.706 40.000 0.00 0.00 37.77 2.17
479 726 5.183228 ACTGGGTCGATTGATTTACGAATT 58.817 37.500 0.00 0.00 37.77 2.17
480 727 4.766375 ACTGGGTCGATTGATTTACGAAT 58.234 39.130 0.00 0.00 37.77 3.34
481 728 4.196626 ACTGGGTCGATTGATTTACGAA 57.803 40.909 0.00 0.00 37.77 3.85
482 729 3.880047 ACTGGGTCGATTGATTTACGA 57.120 42.857 0.00 0.00 0.00 3.43
484 731 3.308866 CGGAACTGGGTCGATTGATTTAC 59.691 47.826 0.00 0.00 0.00 2.01
514 772 1.241990 GCCTTTCCCTTTCCCACGTC 61.242 60.000 0.00 0.00 0.00 4.34
518 787 2.438795 CCGCCTTTCCCTTTCCCA 59.561 61.111 0.00 0.00 0.00 4.37
549 818 2.751816 GCCAGGGTGGGTTATTATGGAC 60.752 54.545 0.00 0.00 38.19 4.02
794 1082 1.540617 GTGGAGGGGGTTGGTAGGT 60.541 63.158 0.00 0.00 0.00 3.08
925 1508 3.420893 TGCATTCGGAGGAAACAAATCT 58.579 40.909 0.00 0.00 35.40 2.40
1096 1687 2.612746 GGGGGTCTTGGCCTGGTA 60.613 66.667 3.32 0.00 0.00 3.25
1171 1762 0.037605 GACGATCTGGGACGTTTGGT 60.038 55.000 0.00 0.00 42.74 3.67
1176 1767 2.747822 CGACGACGATCTGGGACGT 61.748 63.158 0.00 0.00 45.32 4.34
1180 1771 2.102357 CACCGACGACGATCTGGG 59.898 66.667 9.28 0.00 42.66 4.45
1232 1823 2.154798 CTTCTTCGACTGGCCGTCCA 62.155 60.000 18.07 6.56 39.56 4.02
1311 1902 0.548510 GGCTATCCTTTCCAGCACCT 59.451 55.000 0.00 0.00 37.02 4.00
1353 1944 2.106683 GGGGTTCTTCATGGTCGCG 61.107 63.158 0.00 0.00 0.00 5.87
1369 1960 0.457035 CAATCCATTTCAGCACCGGG 59.543 55.000 6.32 0.00 0.00 5.73
1485 2076 2.138320 CTGCGTGTGTGTCTCTTCAAT 58.862 47.619 0.00 0.00 0.00 2.57
1514 2105 1.959042 AATAGCATGGGAGCTGTTCG 58.041 50.000 0.00 0.00 46.11 3.95
1552 2143 1.644509 TCCTTTCCAGCACTGCTAGA 58.355 50.000 2.39 0.00 36.40 2.43
1626 2217 4.500477 GTGCGAGCATTGTTATCCATTTTC 59.500 41.667 0.00 0.00 0.00 2.29
1627 2218 4.423732 GTGCGAGCATTGTTATCCATTTT 58.576 39.130 0.00 0.00 0.00 1.82
1628 2219 3.181487 GGTGCGAGCATTGTTATCCATTT 60.181 43.478 0.00 0.00 0.00 2.32
1629 2220 2.358898 GGTGCGAGCATTGTTATCCATT 59.641 45.455 0.00 0.00 0.00 3.16
1630 2221 1.949525 GGTGCGAGCATTGTTATCCAT 59.050 47.619 0.00 0.00 0.00 3.41
1631 2222 1.378531 GGTGCGAGCATTGTTATCCA 58.621 50.000 0.00 0.00 0.00 3.41
1632 2223 0.304705 CGGTGCGAGCATTGTTATCC 59.695 55.000 0.00 0.00 0.00 2.59
1633 2224 0.304705 CCGGTGCGAGCATTGTTATC 59.695 55.000 0.00 0.00 0.00 1.75
1634 2225 0.392461 ACCGGTGCGAGCATTGTTAT 60.392 50.000 6.12 0.00 0.00 1.89
1635 2226 1.004320 ACCGGTGCGAGCATTGTTA 60.004 52.632 6.12 0.00 0.00 2.41
1636 2227 2.281484 ACCGGTGCGAGCATTGTT 60.281 55.556 6.12 0.00 0.00 2.83
1637 2228 3.049674 CACCGGTGCGAGCATTGT 61.050 61.111 24.02 0.00 0.00 2.71
1647 2238 1.135315 CAATCCATTTCAGCACCGGTG 60.135 52.381 30.66 30.66 0.00 4.94
1648 2239 1.176527 CAATCCATTTCAGCACCGGT 58.823 50.000 0.00 0.00 0.00 5.28
1649 2240 1.135315 CACAATCCATTTCAGCACCGG 60.135 52.381 0.00 0.00 0.00 5.28
1650 2241 1.135315 CCACAATCCATTTCAGCACCG 60.135 52.381 0.00 0.00 0.00 4.94
1651 2242 1.895131 ACCACAATCCATTTCAGCACC 59.105 47.619 0.00 0.00 0.00 5.01
1652 2243 3.665745 AACCACAATCCATTTCAGCAC 57.334 42.857 0.00 0.00 0.00 4.40
1653 2244 3.244146 CCAAACCACAATCCATTTCAGCA 60.244 43.478 0.00 0.00 0.00 4.41
1654 2245 3.328505 CCAAACCACAATCCATTTCAGC 58.671 45.455 0.00 0.00 0.00 4.26
1655 2246 3.865684 GCCCAAACCACAATCCATTTCAG 60.866 47.826 0.00 0.00 0.00 3.02
1656 2247 2.038295 GCCCAAACCACAATCCATTTCA 59.962 45.455 0.00 0.00 0.00 2.69
1657 2248 2.038295 TGCCCAAACCACAATCCATTTC 59.962 45.455 0.00 0.00 0.00 2.17
1658 2249 2.053244 TGCCCAAACCACAATCCATTT 58.947 42.857 0.00 0.00 0.00 2.32
1659 2250 1.727062 TGCCCAAACCACAATCCATT 58.273 45.000 0.00 0.00 0.00 3.16
1660 2251 1.624813 CTTGCCCAAACCACAATCCAT 59.375 47.619 0.00 0.00 0.00 3.41
1661 2252 1.047002 CTTGCCCAAACCACAATCCA 58.953 50.000 0.00 0.00 0.00 3.41
1662 2253 1.000843 GACTTGCCCAAACCACAATCC 59.999 52.381 0.00 0.00 0.00 3.01
1663 2254 1.000843 GGACTTGCCCAAACCACAATC 59.999 52.381 0.00 0.00 0.00 2.67
1664 2255 1.047801 GGACTTGCCCAAACCACAAT 58.952 50.000 0.00 0.00 0.00 2.71
1665 2256 0.324738 TGGACTTGCCCAAACCACAA 60.325 50.000 0.00 0.00 34.97 3.33
1666 2257 0.754957 CTGGACTTGCCCAAACCACA 60.755 55.000 0.00 0.00 35.47 4.17
1667 2258 2.041153 CTGGACTTGCCCAAACCAC 58.959 57.895 0.00 0.00 35.47 4.16
1668 2259 1.832167 GCTGGACTTGCCCAAACCA 60.832 57.895 0.00 0.00 35.47 3.67
1669 2260 1.531602 AGCTGGACTTGCCCAAACC 60.532 57.895 0.00 0.00 35.47 3.27
1670 2261 1.662044 CAGCTGGACTTGCCCAAAC 59.338 57.895 5.57 0.00 35.47 2.93
1671 2262 2.202395 GCAGCTGGACTTGCCCAAA 61.202 57.895 17.12 0.00 35.47 3.28
1672 2263 2.598394 GCAGCTGGACTTGCCCAA 60.598 61.111 17.12 0.00 35.47 4.12
1673 2264 2.718487 ATTGCAGCTGGACTTGCCCA 62.718 55.000 17.12 0.00 34.97 5.36
1674 2265 0.680921 TATTGCAGCTGGACTTGCCC 60.681 55.000 17.12 0.00 34.97 5.36
1675 2266 1.396653 ATATTGCAGCTGGACTTGCC 58.603 50.000 17.12 0.00 37.10 4.52
1676 2267 4.543692 CATAATATTGCAGCTGGACTTGC 58.456 43.478 17.12 0.29 0.00 4.01
1677 2268 4.022589 CCCATAATATTGCAGCTGGACTTG 60.023 45.833 17.12 1.90 0.00 3.16
1678 2269 4.147321 CCCATAATATTGCAGCTGGACTT 58.853 43.478 17.12 8.82 0.00 3.01
1679 2270 3.139025 ACCCATAATATTGCAGCTGGACT 59.861 43.478 17.12 9.88 0.00 3.85
1680 2271 3.254166 CACCCATAATATTGCAGCTGGAC 59.746 47.826 17.12 0.00 0.00 4.02
1681 2272 3.138098 TCACCCATAATATTGCAGCTGGA 59.862 43.478 17.12 10.66 0.00 3.86
1682 2273 3.489355 TCACCCATAATATTGCAGCTGG 58.511 45.455 17.12 0.00 0.00 4.85
1683 2274 4.082408 CCATCACCCATAATATTGCAGCTG 60.082 45.833 10.11 10.11 0.00 4.24
1684 2275 4.084287 CCATCACCCATAATATTGCAGCT 58.916 43.478 0.00 0.00 0.00 4.24
1685 2276 3.194116 CCCATCACCCATAATATTGCAGC 59.806 47.826 0.00 0.00 0.00 5.25
1686 2277 4.410099 ACCCATCACCCATAATATTGCAG 58.590 43.478 0.00 0.00 0.00 4.41
1687 2278 4.467861 ACCCATCACCCATAATATTGCA 57.532 40.909 0.00 0.00 0.00 4.08
1688 2279 4.021192 CCAACCCATCACCCATAATATTGC 60.021 45.833 0.00 0.00 0.00 3.56
1689 2280 4.021192 GCCAACCCATCACCCATAATATTG 60.021 45.833 0.00 0.00 0.00 1.90
1690 2281 4.159557 GCCAACCCATCACCCATAATATT 58.840 43.478 0.00 0.00 0.00 1.28
1691 2282 3.502119 GGCCAACCCATCACCCATAATAT 60.502 47.826 0.00 0.00 0.00 1.28
1692 2283 2.158385 GGCCAACCCATCACCCATAATA 60.158 50.000 0.00 0.00 0.00 0.98
1693 2284 1.412937 GGCCAACCCATCACCCATAAT 60.413 52.381 0.00 0.00 0.00 1.28
1694 2285 0.032615 GGCCAACCCATCACCCATAA 60.033 55.000 0.00 0.00 0.00 1.90
1695 2286 1.217747 TGGCCAACCCATCACCCATA 61.218 55.000 0.61 0.00 39.18 2.74
1696 2287 2.104359 TTGGCCAACCCATCACCCAT 62.104 55.000 16.05 0.00 44.89 4.00
1697 2288 2.783535 TTGGCCAACCCATCACCCA 61.784 57.895 16.05 0.00 44.89 4.51
1698 2289 2.119391 TTGGCCAACCCATCACCC 59.881 61.111 16.05 0.00 44.89 4.61
1699 2290 2.635443 CGTTGGCCAACCCATCACC 61.635 63.158 36.75 14.84 44.89 4.02
1700 2291 2.961768 CGTTGGCCAACCCATCAC 59.038 61.111 36.75 16.48 44.89 3.06
1701 2292 2.988684 GCGTTGGCCAACCCATCA 60.989 61.111 36.75 4.80 44.89 3.07
1702 2293 2.676471 AGCGTTGGCCAACCCATC 60.676 61.111 36.75 24.27 44.89 3.51
1703 2294 2.990967 CAGCGTTGGCCAACCCAT 60.991 61.111 36.75 22.73 44.89 4.00
1706 2297 4.347453 CAGCAGCGTTGGCCAACC 62.347 66.667 36.75 29.04 41.24 3.77
1707 2298 4.347453 CCAGCAGCGTTGGCCAAC 62.347 66.667 34.48 34.48 41.24 3.77
1708 2299 4.577677 TCCAGCAGCGTTGGCCAA 62.578 61.111 16.05 16.05 41.24 4.52
1711 2302 4.704833 TCCTCCAGCAGCGTTGGC 62.705 66.667 0.16 0.00 35.62 4.52
1712 2303 2.249413 ATCTCCTCCAGCAGCGTTGG 62.249 60.000 0.16 5.34 37.04 3.77
1713 2304 0.392193 AATCTCCTCCAGCAGCGTTG 60.392 55.000 0.00 0.00 0.00 4.10
1714 2305 0.392193 CAATCTCCTCCAGCAGCGTT 60.392 55.000 0.00 0.00 0.00 4.84
1715 2306 1.220206 CAATCTCCTCCAGCAGCGT 59.780 57.895 0.00 0.00 0.00 5.07
1716 2307 2.178890 GCAATCTCCTCCAGCAGCG 61.179 63.158 0.00 0.00 0.00 5.18
1717 2308 1.077930 TGCAATCTCCTCCAGCAGC 60.078 57.895 0.00 0.00 0.00 5.25
1718 2309 3.082165 CTGCAATCTCCTCCAGCAG 57.918 57.895 0.00 0.00 45.44 4.24
1719 2310 0.540454 CTCTGCAATCTCCTCCAGCA 59.460 55.000 0.00 0.00 0.00 4.41
1720 2311 0.540923 ACTCTGCAATCTCCTCCAGC 59.459 55.000 0.00 0.00 0.00 4.85
1721 2312 1.829849 TCACTCTGCAATCTCCTCCAG 59.170 52.381 0.00 0.00 0.00 3.86
1722 2313 1.552337 GTCACTCTGCAATCTCCTCCA 59.448 52.381 0.00 0.00 0.00 3.86
1723 2314 1.134551 GGTCACTCTGCAATCTCCTCC 60.135 57.143 0.00 0.00 0.00 4.30
1724 2315 1.552337 TGGTCACTCTGCAATCTCCTC 59.448 52.381 0.00 0.00 0.00 3.71
1725 2316 1.277557 GTGGTCACTCTGCAATCTCCT 59.722 52.381 0.00 0.00 0.00 3.69
1726 2317 1.731720 GTGGTCACTCTGCAATCTCC 58.268 55.000 0.00 0.00 0.00 3.71
1727 2318 1.067565 TCGTGGTCACTCTGCAATCTC 60.068 52.381 0.00 0.00 0.00 2.75
1728 2319 0.969149 TCGTGGTCACTCTGCAATCT 59.031 50.000 0.00 0.00 0.00 2.40
1729 2320 1.354040 CTCGTGGTCACTCTGCAATC 58.646 55.000 0.00 0.00 0.00 2.67
1730 2321 0.036952 CCTCGTGGTCACTCTGCAAT 60.037 55.000 0.00 0.00 0.00 3.56
1731 2322 1.112916 TCCTCGTGGTCACTCTGCAA 61.113 55.000 2.99 0.00 34.23 4.08
1732 2323 1.527433 CTCCTCGTGGTCACTCTGCA 61.527 60.000 2.99 0.00 34.23 4.41
1733 2324 1.214062 CTCCTCGTGGTCACTCTGC 59.786 63.158 2.99 0.00 34.23 4.26
1734 2325 1.214062 GCTCCTCGTGGTCACTCTG 59.786 63.158 2.99 0.00 34.23 3.35
1735 2326 1.228583 TGCTCCTCGTGGTCACTCT 60.229 57.895 2.99 0.00 34.23 3.24
1736 2327 1.080434 GTGCTCCTCGTGGTCACTC 60.080 63.158 17.77 3.35 36.12 3.51
1737 2328 2.574955 GGTGCTCCTCGTGGTCACT 61.575 63.158 21.43 0.00 37.71 3.41
1738 2329 2.048127 GGTGCTCCTCGTGGTCAC 60.048 66.667 17.19 17.19 37.27 3.67
1739 2330 1.480212 ATTGGTGCTCCTCGTGGTCA 61.480 55.000 6.34 0.57 34.23 4.02
1740 2331 1.021390 CATTGGTGCTCCTCGTGGTC 61.021 60.000 6.34 0.00 34.23 4.02
1741 2332 1.003355 CATTGGTGCTCCTCGTGGT 60.003 57.895 6.34 0.00 34.23 4.16
1742 2333 1.746615 CCATTGGTGCTCCTCGTGG 60.747 63.158 6.34 7.67 34.23 4.94
1743 2334 1.746615 CCCATTGGTGCTCCTCGTG 60.747 63.158 6.34 2.50 34.23 4.35
1744 2335 2.671070 CCCATTGGTGCTCCTCGT 59.329 61.111 6.34 0.00 34.23 4.18
1745 2336 2.124570 CCCCATTGGTGCTCCTCG 60.125 66.667 6.34 0.00 34.23 4.63
1746 2337 1.225704 CTCCCCATTGGTGCTCCTC 59.774 63.158 6.34 0.00 34.77 3.71
1747 2338 0.846427 TTCTCCCCATTGGTGCTCCT 60.846 55.000 6.34 0.00 34.77 3.69
1748 2339 0.039618 TTTCTCCCCATTGGTGCTCC 59.960 55.000 1.20 0.00 34.77 4.70
1749 2340 1.923356 TTTTCTCCCCATTGGTGCTC 58.077 50.000 1.20 0.00 34.77 4.26
1750 2341 2.181975 CATTTTCTCCCCATTGGTGCT 58.818 47.619 1.20 0.00 34.77 4.40
1751 2342 1.207811 CCATTTTCTCCCCATTGGTGC 59.792 52.381 1.20 0.00 34.77 5.01
1752 2343 2.818921 TCCATTTTCTCCCCATTGGTG 58.181 47.619 1.20 0.00 34.77 4.17
1753 2344 3.782413 ATCCATTTTCTCCCCATTGGT 57.218 42.857 1.20 0.00 34.77 3.67
1754 2345 4.961730 TGTTATCCATTTTCTCCCCATTGG 59.038 41.667 0.00 0.00 0.00 3.16
1755 2346 6.543430 TTGTTATCCATTTTCTCCCCATTG 57.457 37.500 0.00 0.00 0.00 2.82
1756 2347 6.408434 GCATTGTTATCCATTTTCTCCCCATT 60.408 38.462 0.00 0.00 0.00 3.16
1757 2348 5.070847 GCATTGTTATCCATTTTCTCCCCAT 59.929 40.000 0.00 0.00 0.00 4.00
1758 2349 4.405358 GCATTGTTATCCATTTTCTCCCCA 59.595 41.667 0.00 0.00 0.00 4.96
1759 2350 4.651045 AGCATTGTTATCCATTTTCTCCCC 59.349 41.667 0.00 0.00 0.00 4.81
1760 2351 5.506317 CGAGCATTGTTATCCATTTTCTCCC 60.506 44.000 0.00 0.00 0.00 4.30
1761 2352 5.514279 CGAGCATTGTTATCCATTTTCTCC 58.486 41.667 0.00 0.00 0.00 3.71
1762 2353 4.972440 GCGAGCATTGTTATCCATTTTCTC 59.028 41.667 0.00 0.00 0.00 2.87
1763 2354 4.398988 TGCGAGCATTGTTATCCATTTTCT 59.601 37.500 0.00 0.00 0.00 2.52
1949 2540 2.277737 CTGCCCCATCACCAGCAT 59.722 61.111 0.00 0.00 34.16 3.79
2029 2620 1.080705 CGGTCACACGGGACTTCTC 60.081 63.158 0.00 0.00 37.91 2.87
2054 2645 5.729454 GCAGAAGAAACGTTGCTCTTTAACA 60.729 40.000 9.83 0.00 32.01 2.41
2201 2792 2.182537 CTCTGCGGCAATTTGGGC 59.817 61.111 3.44 0.00 0.00 5.36
2228 2819 2.311542 TGGAACCTCCATGGCACTATTT 59.688 45.455 6.96 0.00 42.67 1.40
2382 2973 1.618343 CGAACATTTGAAAGGGGGCTT 59.382 47.619 0.00 0.00 0.00 4.35
2541 3132 4.133078 GGAAATCTCGCAAGGATCTGATT 58.867 43.478 0.00 0.00 38.47 2.57
2556 3147 9.178758 AGATTCTTGTAAATTAAGCGGAAATCT 57.821 29.630 0.00 0.00 0.00 2.40
2592 3183 0.951040 CCCGTGACCTGTCTTCAAGC 60.951 60.000 0.00 0.00 0.00 4.01
2707 3298 8.199449 CCTTGCATAAAAGATATCACCAACATT 58.801 33.333 5.32 0.00 0.00 2.71
3141 3735 4.736793 GCCTGTTCTGATTTCATAATTGCG 59.263 41.667 0.00 0.00 0.00 4.85
3348 3942 0.839946 AGGCACACAGTTTGGAGTCT 59.160 50.000 0.00 0.00 0.00 3.24
3354 3948 2.032054 CACTACACAGGCACACAGTTTG 59.968 50.000 0.00 0.00 0.00 2.93
4090 4684 7.606456 TCATACTTATTGGACACTGAAAAGGTC 59.394 37.037 0.00 0.00 0.00 3.85
4279 4874 1.073125 TGAGAGGTTGCCGGAAAATGA 59.927 47.619 5.05 0.00 0.00 2.57
4380 4976 3.430374 GCTCCAGTAATCTCCGCTTACAA 60.430 47.826 0.00 0.00 32.63 2.41
4381 4977 2.100916 GCTCCAGTAATCTCCGCTTACA 59.899 50.000 0.00 0.00 32.63 2.41
4467 5063 5.618056 TGCAACAAATTTTCAAAGCAACA 57.382 30.435 0.00 0.00 0.00 3.33
4519 5115 9.646336 CCATGTTGTTAATCTAAGTAATAACGC 57.354 33.333 0.00 0.00 36.12 4.84
4541 5137 9.874205 ATGTGTATTTTAGTTTCAATTCCCATG 57.126 29.630 0.00 0.00 0.00 3.66
4660 5256 2.579873 ACTATGCCAACTGATCATGCC 58.420 47.619 0.00 0.00 0.00 4.40
4800 5396 5.155161 AGCAATCCTACATCCTACATACCA 58.845 41.667 0.00 0.00 0.00 3.25
4821 5417 9.067986 ACAATAGTAAATATAAGGGCAAAGAGC 57.932 33.333 0.00 0.00 44.65 4.09
4911 5509 8.224389 TCACATCATAATGGAAACCAATGTAG 57.776 34.615 0.00 0.00 36.95 2.74
4919 5517 9.013490 CGAATTCTTTCACATCATAATGGAAAC 57.987 33.333 3.52 0.00 37.19 2.78
4978 5576 9.829507 AATTCTAGGATGATTAGTTCTTCACTG 57.170 33.333 0.00 0.00 35.97 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.