Multiple sequence alignment - TraesCS2A01G389200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G389200 chr2A 100.000 5203 0 0 1 5203 637682260 637677058 0.000000e+00 9609.0
1 TraesCS2A01G389200 chr2A 95.385 130 6 0 4933 5062 293062989 293062860 1.900000e-49 207.0
2 TraesCS2A01G389200 chr2A 100.000 30 0 0 3285 3314 5186744 5186715 7.280000e-04 56.5
3 TraesCS2A01G389200 chr2D 92.697 4368 132 62 368 4672 492512632 492508389 0.000000e+00 6126.0
4 TraesCS2A01G389200 chr2D 93.939 330 11 5 1 327 492513037 492512714 1.680000e-134 490.0
5 TraesCS2A01G389200 chr2D 91.845 233 10 5 4706 4937 492508051 492507827 3.020000e-82 316.0
6 TraesCS2A01G389200 chr2D 96.094 128 2 2 5060 5184 492507757 492507630 6.830000e-49 206.0
7 TraesCS2A01G389200 chr2B 90.722 4764 181 100 38 4672 578140814 578136183 0.000000e+00 6107.0
8 TraesCS2A01G389200 chr6B 93.424 517 18 5 3515 4025 505256916 505256410 0.000000e+00 752.0
9 TraesCS2A01G389200 chr6B 80.935 834 130 18 2221 3038 162546061 162546881 2.640000e-177 632.0
10 TraesCS2A01G389200 chr6B 90.123 162 16 0 2221 2382 512872811 512872972 1.470000e-50 211.0
11 TraesCS2A01G389200 chr6B 87.975 158 17 2 1189 1345 162545860 162546016 8.900000e-43 185.0
12 TraesCS2A01G389200 chr5D 92.621 515 31 4 2541 3052 378325610 378326120 0.000000e+00 734.0
13 TraesCS2A01G389200 chr5D 93.075 491 26 3 3567 4055 378333758 378334242 0.000000e+00 712.0
14 TraesCS2A01G389200 chr6A 81.995 822 118 18 2216 3014 103264072 103264886 0.000000e+00 671.0
15 TraesCS2A01G389200 chr6A 85.577 312 37 6 3299 3609 450465277 450464973 2.340000e-83 320.0
16 TraesCS2A01G389200 chr6A 90.741 162 15 0 2221 2382 450465983 450465822 3.160000e-52 217.0
17 TraesCS2A01G389200 chr6D 81.742 838 115 22 2216 3038 85906195 85907009 0.000000e+00 665.0
18 TraesCS2A01G389200 chr6D 85.852 311 36 6 3300 3609 313281989 313281686 1.810000e-84 324.0
19 TraesCS2A01G389200 chr6D 90.741 162 15 0 2221 2382 313282693 313282532 3.160000e-52 217.0
20 TraesCS2A01G389200 chr6D 87.195 164 21 0 1189 1352 85906000 85906163 2.470000e-43 187.0
21 TraesCS2A01G389200 chr1D 88.172 279 33 0 3329 3607 231465068 231464790 3.000000e-87 333.0
22 TraesCS2A01G389200 chr1D 88.000 150 18 0 2221 2370 231466170 231466021 1.490000e-40 178.0
23 TraesCS2A01G389200 chr1D 87.255 102 11 2 2835 2935 263200582 263200682 1.180000e-21 115.0
24 TraesCS2A01G389200 chr1D 100.000 30 0 0 3285 3314 263200727 263200756 7.280000e-04 56.5
25 TraesCS2A01G389200 chr1B 87.500 288 36 0 3320 3607 365021471 365021758 3.000000e-87 333.0
26 TraesCS2A01G389200 chr1B 86.667 150 20 0 2221 2370 365020390 365020539 3.220000e-37 167.0
27 TraesCS2A01G389200 chr1A 87.153 288 37 0 3320 3607 317813374 317813661 1.400000e-85 327.0
28 TraesCS2A01G389200 chr1A 94.815 135 7 0 4928 5062 12159678 12159812 1.470000e-50 211.0
29 TraesCS2A01G389200 chr1A 89.744 156 13 2 4920 5072 378182965 378182810 4.110000e-46 196.0
30 TraesCS2A01G389200 chr1A 88.000 150 18 0 2221 2370 317812284 317812433 1.490000e-40 178.0
31 TraesCS2A01G389200 chr5A 86.268 284 36 3 3321 3602 708807365 708807083 6.550000e-79 305.0
32 TraesCS2A01G389200 chr5A 94.074 135 8 0 4934 5068 681861668 681861802 6.830000e-49 206.0
33 TraesCS2A01G389200 chr4B 86.268 284 36 3 3321 3602 671632088 671631806 6.550000e-79 305.0
34 TraesCS2A01G389200 chr4B 92.857 140 8 2 4935 5072 210282884 210282745 8.830000e-48 202.0
35 TraesCS2A01G389200 chr4B 76.596 235 47 7 2741 2971 671632643 671632413 7.080000e-24 122.0
36 TraesCS2A01G389200 chr4A 95.385 130 6 0 4935 5064 513375882 513376011 1.900000e-49 207.0
37 TraesCS2A01G389200 chr4A 91.216 148 8 4 4923 5068 48289234 48289090 4.110000e-46 196.0
38 TraesCS2A01G389200 chr3B 95.385 130 6 0 4935 5064 125525677 125525806 1.900000e-49 207.0
39 TraesCS2A01G389200 chr5B 93.985 133 7 1 4935 5067 82212300 82212169 3.180000e-47 200.0
40 TraesCS2A01G389200 chrUn 77.273 220 42 7 2741 2956 28396399 28396614 7.080000e-24 122.0
41 TraesCS2A01G389200 chrUn 92.500 40 1 1 3285 3324 431347004 431346967 7.280000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G389200 chr2A 637677058 637682260 5202 True 9609.0 9609 100.00000 1 5203 1 chr2A.!!$R3 5202
1 TraesCS2A01G389200 chr2D 492507630 492513037 5407 True 1784.5 6126 93.64375 1 5184 4 chr2D.!!$R1 5183
2 TraesCS2A01G389200 chr2B 578136183 578140814 4631 True 6107.0 6107 90.72200 38 4672 1 chr2B.!!$R1 4634
3 TraesCS2A01G389200 chr6B 505256410 505256916 506 True 752.0 752 93.42400 3515 4025 1 chr6B.!!$R1 510
4 TraesCS2A01G389200 chr6B 162545860 162546881 1021 False 408.5 632 84.45500 1189 3038 2 chr6B.!!$F2 1849
5 TraesCS2A01G389200 chr5D 378325610 378326120 510 False 734.0 734 92.62100 2541 3052 1 chr5D.!!$F1 511
6 TraesCS2A01G389200 chr6A 103264072 103264886 814 False 671.0 671 81.99500 2216 3014 1 chr6A.!!$F1 798
7 TraesCS2A01G389200 chr6A 450464973 450465983 1010 True 268.5 320 88.15900 2221 3609 2 chr6A.!!$R1 1388
8 TraesCS2A01G389200 chr6D 85906000 85907009 1009 False 426.0 665 84.46850 1189 3038 2 chr6D.!!$F1 1849
9 TraesCS2A01G389200 chr6D 313281686 313282693 1007 True 270.5 324 88.29650 2221 3609 2 chr6D.!!$R1 1388
10 TraesCS2A01G389200 chr1D 231464790 231466170 1380 True 255.5 333 88.08600 2221 3607 2 chr1D.!!$R1 1386
11 TraesCS2A01G389200 chr1B 365020390 365021758 1368 False 250.0 333 87.08350 2221 3607 2 chr1B.!!$F1 1386
12 TraesCS2A01G389200 chr1A 317812284 317813661 1377 False 252.5 327 87.57650 2221 3607 2 chr1A.!!$F2 1386
13 TraesCS2A01G389200 chr4B 671631806 671632643 837 True 213.5 305 81.43200 2741 3602 2 chr4B.!!$R2 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 480 0.033306 GGGAGGAAGAGTCGTAGGGT 60.033 60.0 0.00 0.00 0.00 4.34 F
748 844 0.048117 TCTACTCCCTCCCTCTCCCT 59.952 60.0 0.00 0.00 0.00 4.20 F
1537 1671 0.324645 GCTGGTTGGAATGGGATGGT 60.325 55.0 0.00 0.00 0.00 3.55 F
1704 1854 0.463833 GGGTGGCGGTAAGAATCTGG 60.464 60.0 0.00 0.00 0.00 3.86 F
1705 1855 0.463833 GGTGGCGGTAAGAATCTGGG 60.464 60.0 0.00 0.00 0.00 4.45 F
1706 1856 0.463833 GTGGCGGTAAGAATCTGGGG 60.464 60.0 0.00 0.00 0.00 4.96 F
1915 2089 0.543749 CGGCTTCAATTCCCCTCTCT 59.456 55.0 0.00 0.00 0.00 3.10 F
2609 2853 0.671781 CAAGGTCTGAGCTTCCCGTG 60.672 60.0 18.45 5.22 32.99 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 2254 0.105709 GGAGGAGGAGGAGGAGGAAG 60.106 65.000 0.00 0.0 0.00 3.46 R
2072 2260 0.338120 ACAAGAGGAGGAGGAGGAGG 59.662 60.000 0.00 0.0 0.00 4.30 R
2595 2839 1.078918 CATGCACGGGAAGCTCAGA 60.079 57.895 0.00 0.0 0.00 3.27 R
2609 2853 1.226717 GACTCGGAGTCGGACATGC 60.227 63.158 21.28 0.0 35.28 4.06 R
3160 3653 1.821759 CCTTGTGTGGTGGTTGCGA 60.822 57.895 0.00 0.0 0.00 5.10 R
3838 4376 2.287909 GCAAGGTAAAAATGGTGTGCGA 60.288 45.455 0.00 0.0 0.00 5.10 R
3892 4432 1.271707 ACCCCGAAAAACATCCATCGT 60.272 47.619 0.00 0.0 33.65 3.73 R
4676 5218 0.472471 AACAGTTTTCGGCCCTCTGA 59.528 50.000 0.00 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 180 3.726517 CGTTTCACCGCCTGCCTG 61.727 66.667 0.00 0.00 0.00 4.85
175 181 4.043200 GTTTCACCGCCTGCCTGC 62.043 66.667 0.00 0.00 0.00 4.85
203 209 0.321653 CACCCTCCCTCTTTTGTCCG 60.322 60.000 0.00 0.00 0.00 4.79
223 229 0.883833 CATGCCCGGCTCATTAATCC 59.116 55.000 11.61 0.00 0.00 3.01
225 231 1.966451 GCCCGGCTCATTAATCCCG 60.966 63.158 0.71 10.33 40.39 5.14
289 302 0.944386 CAGCCGCTATAAAACGCCAT 59.056 50.000 0.00 0.00 0.00 4.40
329 342 1.058748 CGTCGGCGCATACAAAGTG 59.941 57.895 10.83 0.00 0.00 3.16
378 432 3.579586 TCGTATACCTTGGTTCTTGGTGT 59.420 43.478 0.00 0.00 35.48 4.16
410 464 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
411 465 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
413 467 3.036959 GGAGGGAGGGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
416 470 1.550374 AGGGAGGGAGGGAGGAAGA 60.550 63.158 0.00 0.00 0.00 2.87
419 473 0.397957 GGAGGGAGGGAGGAAGAGTC 60.398 65.000 0.00 0.00 0.00 3.36
420 474 0.753848 GAGGGAGGGAGGAAGAGTCG 60.754 65.000 0.00 0.00 0.00 4.18
421 475 1.000612 GGGAGGGAGGAAGAGTCGT 59.999 63.158 0.00 0.00 0.00 4.34
422 476 0.258194 GGGAGGGAGGAAGAGTCGTA 59.742 60.000 0.00 0.00 0.00 3.43
423 477 1.682740 GGAGGGAGGAAGAGTCGTAG 58.317 60.000 0.00 0.00 0.00 3.51
424 478 1.682740 GAGGGAGGAAGAGTCGTAGG 58.317 60.000 0.00 0.00 0.00 3.18
425 479 0.259356 AGGGAGGAAGAGTCGTAGGG 59.741 60.000 0.00 0.00 0.00 3.53
426 480 0.033306 GGGAGGAAGAGTCGTAGGGT 60.033 60.000 0.00 0.00 0.00 4.34
427 481 1.213926 GGGAGGAAGAGTCGTAGGGTA 59.786 57.143 0.00 0.00 0.00 3.69
428 482 2.574450 GGAGGAAGAGTCGTAGGGTAG 58.426 57.143 0.00 0.00 0.00 3.18
429 483 2.172293 GGAGGAAGAGTCGTAGGGTAGA 59.828 54.545 0.00 0.00 0.00 2.59
430 484 3.469739 GAGGAAGAGTCGTAGGGTAGAG 58.530 54.545 0.00 0.00 0.00 2.43
431 485 3.113824 AGGAAGAGTCGTAGGGTAGAGA 58.886 50.000 0.00 0.00 0.00 3.10
432 486 3.135167 AGGAAGAGTCGTAGGGTAGAGAG 59.865 52.174 0.00 0.00 0.00 3.20
433 487 3.134442 GGAAGAGTCGTAGGGTAGAGAGA 59.866 52.174 0.00 0.00 0.00 3.10
434 488 4.374399 GAAGAGTCGTAGGGTAGAGAGAG 58.626 52.174 0.00 0.00 0.00 3.20
551 628 1.754201 GCTTCCTCTCTCCTCCCTCTC 60.754 61.905 0.00 0.00 0.00 3.20
552 629 1.852965 CTTCCTCTCTCCTCCCTCTCT 59.147 57.143 0.00 0.00 0.00 3.10
611 689 2.608623 CCCCCACTCTTTTTCACCATT 58.391 47.619 0.00 0.00 0.00 3.16
619 697 3.074412 TCTTTTTCACCATTCTCTCGCC 58.926 45.455 0.00 0.00 0.00 5.54
621 699 0.984230 TTTCACCATTCTCTCGCCCT 59.016 50.000 0.00 0.00 0.00 5.19
623 701 0.614697 TCACCATTCTCTCGCCCTCA 60.615 55.000 0.00 0.00 0.00 3.86
629 721 2.123077 CTCTCGCCCTCATCCCCT 60.123 66.667 0.00 0.00 0.00 4.79
653 745 2.043450 CCAGCGTCCTCCTCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
673 766 4.416601 CCTCCCCGGACCTTCCCT 62.417 72.222 0.73 0.00 31.13 4.20
674 767 2.285442 CTCCCCGGACCTTCCCTT 60.285 66.667 0.73 0.00 31.13 3.95
679 772 1.923909 CCGGACCTTCCCTTCCCTT 60.924 63.158 0.00 0.00 31.13 3.95
741 837 2.050918 CCTCCAATTCTACTCCCTCCC 58.949 57.143 0.00 0.00 0.00 4.30
742 838 2.360854 CCTCCAATTCTACTCCCTCCCT 60.361 54.545 0.00 0.00 0.00 4.20
743 839 2.969262 CTCCAATTCTACTCCCTCCCTC 59.031 54.545 0.00 0.00 0.00 4.30
744 840 2.592512 TCCAATTCTACTCCCTCCCTCT 59.407 50.000 0.00 0.00 0.00 3.69
745 841 2.969262 CCAATTCTACTCCCTCCCTCTC 59.031 54.545 0.00 0.00 0.00 3.20
746 842 2.969262 CAATTCTACTCCCTCCCTCTCC 59.031 54.545 0.00 0.00 0.00 3.71
747 843 0.935194 TTCTACTCCCTCCCTCTCCC 59.065 60.000 0.00 0.00 0.00 4.30
748 844 0.048117 TCTACTCCCTCCCTCTCCCT 59.952 60.000 0.00 0.00 0.00 4.20
765 861 4.507916 TCTCTCCCTCTCCGCCCG 62.508 72.222 0.00 0.00 0.00 6.13
816 912 3.157087 GAGAGGAAGGAGATGAGCTAGG 58.843 54.545 0.00 0.00 0.00 3.02
817 913 2.788807 AGAGGAAGGAGATGAGCTAGGA 59.211 50.000 0.00 0.00 0.00 2.94
818 914 3.157087 GAGGAAGGAGATGAGCTAGGAG 58.843 54.545 0.00 0.00 0.00 3.69
819 915 1.618343 GGAAGGAGATGAGCTAGGAGC 59.382 57.143 0.00 0.00 42.84 4.70
827 923 3.438017 GAGCTAGGAGCACAGCCCG 62.438 68.421 0.64 0.00 45.56 6.13
864 960 5.677319 TTCCCTACAATTCACTAGTCCTG 57.323 43.478 0.00 0.00 0.00 3.86
866 962 3.452627 CCCTACAATTCACTAGTCCTGCT 59.547 47.826 0.00 0.00 0.00 4.24
888 984 1.338105 CCTCTCGATTGCTCCACACAA 60.338 52.381 0.00 0.00 0.00 3.33
946 1042 1.815003 CCTTCCTTTGCTAGCTTGGTG 59.185 52.381 17.23 11.47 0.00 4.17
964 1060 4.128388 CCCCGCCGGACAATTTGC 62.128 66.667 5.05 0.00 0.00 3.68
1044 1166 4.849329 GCGTCTCAGTACGGGGCG 62.849 72.222 7.13 7.13 43.06 6.13
1045 1167 4.849329 CGTCTCAGTACGGGGCGC 62.849 72.222 0.00 0.00 39.19 6.53
1396 1530 2.824341 TCCAGGTAAGAAAGAGGTCGAC 59.176 50.000 7.13 7.13 0.00 4.20
1406 1540 7.803279 AAGAAAGAGGTCGACAAAGTAAAAT 57.197 32.000 18.91 0.00 0.00 1.82
1460 1594 2.806856 CGCAGCGGCATCTTGTCTC 61.807 63.158 7.00 0.00 41.24 3.36
1463 1597 3.567797 GCGGCATCTTGTCTCGGC 61.568 66.667 0.00 0.00 0.00 5.54
1532 1666 0.679640 TTAGCGCTGGTTGGAATGGG 60.680 55.000 22.90 0.00 0.00 4.00
1533 1667 1.558167 TAGCGCTGGTTGGAATGGGA 61.558 55.000 22.90 0.00 0.00 4.37
1534 1668 1.754234 GCGCTGGTTGGAATGGGAT 60.754 57.895 0.00 0.00 0.00 3.85
1535 1669 2.008268 GCGCTGGTTGGAATGGGATG 62.008 60.000 0.00 0.00 0.00 3.51
1536 1670 1.386525 CGCTGGTTGGAATGGGATGG 61.387 60.000 0.00 0.00 0.00 3.51
1537 1671 0.324645 GCTGGTTGGAATGGGATGGT 60.325 55.000 0.00 0.00 0.00 3.55
1597 1747 6.595716 CCTTGTTGTTATCTCCTCGAATTTCT 59.404 38.462 0.00 0.00 0.00 2.52
1629 1779 2.498167 CCTTTCCTGGCCGATCTAATG 58.502 52.381 0.00 0.00 0.00 1.90
1668 1818 2.042843 AGGCCGTGGAGTAGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
1703 1853 0.541863 AGGGTGGCGGTAAGAATCTG 59.458 55.000 0.00 0.00 0.00 2.90
1704 1854 0.463833 GGGTGGCGGTAAGAATCTGG 60.464 60.000 0.00 0.00 0.00 3.86
1705 1855 0.463833 GGTGGCGGTAAGAATCTGGG 60.464 60.000 0.00 0.00 0.00 4.45
1706 1856 0.463833 GTGGCGGTAAGAATCTGGGG 60.464 60.000 0.00 0.00 0.00 4.96
1707 1857 1.526225 GGCGGTAAGAATCTGGGGC 60.526 63.158 0.00 0.00 0.00 5.80
1856 2018 1.721664 CCAATGCGGCCTCACTCATG 61.722 60.000 0.00 0.00 0.00 3.07
1857 2019 2.117156 AATGCGGCCTCACTCATGC 61.117 57.895 0.00 0.00 0.00 4.06
1858 2020 2.825075 AATGCGGCCTCACTCATGCA 62.825 55.000 0.00 0.00 36.69 3.96
1859 2021 2.515523 GCGGCCTCACTCATGCAT 60.516 61.111 0.00 0.00 0.00 3.96
1874 2040 7.039853 TCACTCATGCATCTTTGTTTATTTCCA 60.040 33.333 0.00 0.00 0.00 3.53
1915 2089 0.543749 CGGCTTCAATTCCCCTCTCT 59.456 55.000 0.00 0.00 0.00 3.10
1916 2090 1.474143 CGGCTTCAATTCCCCTCTCTC 60.474 57.143 0.00 0.00 0.00 3.20
1917 2091 1.561542 GGCTTCAATTCCCCTCTCTCA 59.438 52.381 0.00 0.00 0.00 3.27
1918 2092 2.637947 GCTTCAATTCCCCTCTCTCAC 58.362 52.381 0.00 0.00 0.00 3.51
1944 2118 4.521062 AGACGAGATGGCCTGCGC 62.521 66.667 3.32 0.00 0.00 6.09
2036 2224 3.368948 CCGGAGAGGAGGAAAAAGAGAAG 60.369 52.174 0.00 0.00 45.00 2.85
2069 2257 6.151975 CGAAGCTTCTTCTTCTTCTTCTTC 57.848 41.667 23.50 0.00 40.11 2.87
2070 2258 5.120053 CGAAGCTTCTTCTTCTTCTTCTTCC 59.880 44.000 23.50 0.00 40.11 3.46
2071 2259 5.823861 AGCTTCTTCTTCTTCTTCTTCCT 57.176 39.130 0.00 0.00 0.00 3.36
2072 2260 5.793817 AGCTTCTTCTTCTTCTTCTTCCTC 58.206 41.667 0.00 0.00 0.00 3.71
2073 2261 4.935205 GCTTCTTCTTCTTCTTCTTCCTCC 59.065 45.833 0.00 0.00 0.00 4.30
2074 2262 5.279960 GCTTCTTCTTCTTCTTCTTCCTCCT 60.280 44.000 0.00 0.00 0.00 3.69
2075 2263 5.993748 TCTTCTTCTTCTTCTTCCTCCTC 57.006 43.478 0.00 0.00 0.00 3.71
2076 2264 4.775253 TCTTCTTCTTCTTCTTCCTCCTCC 59.225 45.833 0.00 0.00 0.00 4.30
2077 2265 4.412060 TCTTCTTCTTCTTCCTCCTCCT 57.588 45.455 0.00 0.00 0.00 3.69
2078 2266 4.349365 TCTTCTTCTTCTTCCTCCTCCTC 58.651 47.826 0.00 0.00 0.00 3.71
2079 2267 3.108847 TCTTCTTCTTCCTCCTCCTCC 57.891 52.381 0.00 0.00 0.00 4.30
2080 2268 2.657459 TCTTCTTCTTCCTCCTCCTCCT 59.343 50.000 0.00 0.00 0.00 3.69
2081 2269 2.838637 TCTTCTTCCTCCTCCTCCTC 57.161 55.000 0.00 0.00 0.00 3.71
2088 2276 0.998945 CCTCCTCCTCCTCCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
2123 2311 1.942657 TGCTCATTTAATCCGCTCTGC 59.057 47.619 0.00 0.00 0.00 4.26
2154 2342 4.381292 GCTTCCAGTCCTTTGATTGATTGG 60.381 45.833 0.00 0.00 39.13 3.16
2210 2402 2.256117 ACCTTCCGTTTCTGTCTTGG 57.744 50.000 0.00 0.00 0.00 3.61
2211 2403 1.489230 ACCTTCCGTTTCTGTCTTGGT 59.511 47.619 0.00 0.00 0.00 3.67
2216 2408 2.685897 TCCGTTTCTGTCTTGGTTTTGG 59.314 45.455 0.00 0.00 0.00 3.28
2370 2565 2.283894 TTCCAGGAGCTCGAGGCA 60.284 61.111 15.58 4.95 44.79 4.75
2427 2622 2.433446 CACCAGGAGCAGTTGCCT 59.567 61.111 0.00 0.00 43.38 4.75
2609 2853 0.671781 CAAGGTCTGAGCTTCCCGTG 60.672 60.000 18.45 5.22 32.99 4.94
3092 3465 2.203195 GTCACAGGCCACACAGCA 60.203 61.111 5.01 0.00 0.00 4.41
3160 3653 2.124653 TCCAACAACAACCGCCGT 60.125 55.556 0.00 0.00 0.00 5.68
3314 3846 4.467107 GGGAGGAGGGGAGAGCGT 62.467 72.222 0.00 0.00 0.00 5.07
3822 4360 4.309950 GCCACGTTCGACCTGGGT 62.310 66.667 0.00 0.00 0.00 4.51
3863 4401 2.965147 ACACCATTTTTACCTTGCAGCT 59.035 40.909 0.00 0.00 0.00 4.24
4131 4671 1.304381 ACCAACAATGCGCCTCCAT 60.304 52.632 4.18 0.00 0.00 3.41
4133 4673 1.314534 CCAACAATGCGCCTCCATCA 61.315 55.000 4.18 0.00 0.00 3.07
4204 4744 0.811616 CTCGCCATGGTTCAGTAGGC 60.812 60.000 14.67 0.00 41.86 3.93
4205 4745 3.813596 GCCATGGTTCAGTAGGCG 58.186 61.111 14.67 0.00 35.42 5.52
4346 4887 0.659427 GCCATCACATCACACCATCG 59.341 55.000 0.00 0.00 0.00 3.84
4347 4888 1.743431 GCCATCACATCACACCATCGA 60.743 52.381 0.00 0.00 0.00 3.59
4348 4889 2.842457 CCATCACATCACACCATCGAT 58.158 47.619 0.00 0.00 0.00 3.59
4349 4890 2.804527 CCATCACATCACACCATCGATC 59.195 50.000 0.00 0.00 0.00 3.69
4362 4903 2.277120 CGATCACCGACGACGACC 60.277 66.667 9.28 0.00 42.66 4.79
4403 4944 2.115427 TCCTCTCGTGCCATTCCATTA 58.885 47.619 0.00 0.00 0.00 1.90
4520 5061 3.527533 TGCGTAACATAGGTGTTCATCC 58.472 45.455 0.00 0.00 45.14 3.51
4574 5116 4.713792 AAGAGTCCCTGATGTCTGTTTT 57.286 40.909 0.00 0.00 0.00 2.43
4575 5117 4.278975 AGAGTCCCTGATGTCTGTTTTC 57.721 45.455 0.00 0.00 0.00 2.29
4576 5118 3.906846 AGAGTCCCTGATGTCTGTTTTCT 59.093 43.478 0.00 0.00 0.00 2.52
4577 5119 4.349342 AGAGTCCCTGATGTCTGTTTTCTT 59.651 41.667 0.00 0.00 0.00 2.52
4578 5120 4.646572 AGTCCCTGATGTCTGTTTTCTTC 58.353 43.478 0.00 0.00 0.00 2.87
4579 5121 4.349342 AGTCCCTGATGTCTGTTTTCTTCT 59.651 41.667 0.00 0.00 0.00 2.85
4580 5122 5.066593 GTCCCTGATGTCTGTTTTCTTCTT 58.933 41.667 0.00 0.00 0.00 2.52
4581 5123 5.180304 GTCCCTGATGTCTGTTTTCTTCTTC 59.820 44.000 0.00 0.00 0.00 2.87
4582 5124 5.072329 TCCCTGATGTCTGTTTTCTTCTTCT 59.928 40.000 0.00 0.00 0.00 2.85
4583 5125 5.767168 CCCTGATGTCTGTTTTCTTCTTCTT 59.233 40.000 0.00 0.00 0.00 2.52
4607 5149 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTTCT 57.454 33.333 0.00 0.00 0.00 2.52
4672 5214 7.440523 ACATTTCAAGTAACTTGGATCAGAC 57.559 36.000 0.00 0.00 41.33 3.51
4673 5215 7.227156 ACATTTCAAGTAACTTGGATCAGACT 58.773 34.615 0.00 0.00 41.33 3.24
4674 5216 7.389053 ACATTTCAAGTAACTTGGATCAGACTC 59.611 37.037 0.00 0.00 41.33 3.36
4675 5217 6.419484 TTCAAGTAACTTGGATCAGACTCA 57.581 37.500 0.00 0.00 41.33 3.41
4676 5218 6.611613 TCAAGTAACTTGGATCAGACTCAT 57.388 37.500 0.00 0.00 41.33 2.90
4677 5219 6.634805 TCAAGTAACTTGGATCAGACTCATC 58.365 40.000 0.00 0.00 41.33 2.92
4678 5220 6.211384 TCAAGTAACTTGGATCAGACTCATCA 59.789 38.462 0.00 0.00 41.33 3.07
4683 5225 2.675583 TGGATCAGACTCATCAGAGGG 58.324 52.381 0.00 0.00 46.44 4.30
4697 5239 1.681264 CAGAGGGCCGAAAACTGTTTT 59.319 47.619 17.71 17.71 35.12 2.43
4698 5240 2.100749 CAGAGGGCCGAAAACTGTTTTT 59.899 45.455 18.58 2.92 37.65 1.94
4699 5241 3.316868 CAGAGGGCCGAAAACTGTTTTTA 59.683 43.478 18.58 0.00 34.94 1.52
4700 5242 3.317149 AGAGGGCCGAAAACTGTTTTTAC 59.683 43.478 18.58 11.31 34.94 2.01
4701 5243 2.033675 AGGGCCGAAAACTGTTTTTACG 59.966 45.455 18.58 17.04 34.94 3.18
4702 5244 2.033174 GGGCCGAAAACTGTTTTTACGA 59.967 45.455 21.39 0.00 34.94 3.43
4703 5245 3.294102 GGCCGAAAACTGTTTTTACGAG 58.706 45.455 21.39 14.82 34.94 4.18
4704 5246 3.242837 GGCCGAAAACTGTTTTTACGAGT 60.243 43.478 21.39 0.84 34.94 4.18
4736 5591 7.011576 TGTTGTTACAGTGTATACTTTGTGTGG 59.988 37.037 17.57 0.00 34.07 4.17
4743 5598 6.818644 CAGTGTATACTTTGTGTGGCTATTCT 59.181 38.462 4.17 0.00 34.07 2.40
4771 5626 2.010582 TTGCGGGAACTTTGTGTGGC 62.011 55.000 0.00 0.00 0.00 5.01
4772 5627 2.637025 CGGGAACTTTGTGTGGCG 59.363 61.111 0.00 0.00 0.00 5.69
4776 5631 1.068541 GGGAACTTTGTGTGGCGATTC 60.069 52.381 0.00 0.00 0.00 2.52
4809 5664 7.746929 TGTTCACATGTTTTTGGTTTTCATTC 58.253 30.769 0.00 0.00 0.00 2.67
4810 5665 7.388776 TGTTCACATGTTTTTGGTTTTCATTCA 59.611 29.630 0.00 0.00 0.00 2.57
4811 5666 8.397148 GTTCACATGTTTTTGGTTTTCATTCAT 58.603 29.630 0.00 0.00 0.00 2.57
4812 5667 8.503458 TCACATGTTTTTGGTTTTCATTCATT 57.497 26.923 0.00 0.00 0.00 2.57
4891 5746 6.183360 TGCCAATATGACTTTTCTTAAGCTCG 60.183 38.462 0.00 0.00 0.00 5.03
4893 5748 6.316390 CCAATATGACTTTTCTTAAGCTCGGT 59.684 38.462 0.00 0.00 0.00 4.69
4894 5749 6.910536 ATATGACTTTTCTTAAGCTCGGTG 57.089 37.500 0.00 0.00 0.00 4.94
4895 5750 4.067972 TGACTTTTCTTAAGCTCGGTGT 57.932 40.909 0.00 0.00 0.00 4.16
4937 5793 8.904834 CATCAATGTAAGTACCACTAGACTACT 58.095 37.037 0.00 0.00 0.00 2.57
4938 5794 8.503458 TCAATGTAAGTACCACTAGACTACTC 57.497 38.462 0.00 0.00 0.00 2.59
4939 5795 7.555554 TCAATGTAAGTACCACTAGACTACTCC 59.444 40.741 0.00 0.00 0.00 3.85
4940 5796 6.378661 TGTAAGTACCACTAGACTACTCCA 57.621 41.667 0.00 0.00 0.00 3.86
4941 5797 6.966751 TGTAAGTACCACTAGACTACTCCAT 58.033 40.000 0.00 0.00 0.00 3.41
4942 5798 7.052873 TGTAAGTACCACTAGACTACTCCATC 58.947 42.308 0.00 0.00 0.00 3.51
4943 5799 5.051409 AGTACCACTAGACTACTCCATCC 57.949 47.826 0.00 0.00 0.00 3.51
4945 5801 2.241685 ACCACTAGACTACTCCATCCGT 59.758 50.000 0.00 0.00 0.00 4.69
4946 5802 3.288964 CCACTAGACTACTCCATCCGTT 58.711 50.000 0.00 0.00 0.00 4.44
4947 5803 3.315749 CCACTAGACTACTCCATCCGTTC 59.684 52.174 0.00 0.00 0.00 3.95
4948 5804 3.315749 CACTAGACTACTCCATCCGTTCC 59.684 52.174 0.00 0.00 0.00 3.62
4949 5805 1.390565 AGACTACTCCATCCGTTCCG 58.609 55.000 0.00 0.00 0.00 4.30
4950 5806 1.064906 AGACTACTCCATCCGTTCCGA 60.065 52.381 0.00 0.00 0.00 4.55
4952 5808 2.361438 GACTACTCCATCCGTTCCGAAT 59.639 50.000 0.00 0.00 0.00 3.34
4953 5809 2.764572 ACTACTCCATCCGTTCCGAATT 59.235 45.455 0.00 0.00 0.00 2.17
4954 5810 3.956199 ACTACTCCATCCGTTCCGAATTA 59.044 43.478 0.00 0.00 0.00 1.40
4955 5811 3.175109 ACTCCATCCGTTCCGAATTAC 57.825 47.619 0.00 0.00 0.00 1.89
4956 5812 2.764572 ACTCCATCCGTTCCGAATTACT 59.235 45.455 0.00 0.00 0.00 2.24
4958 5814 3.527533 TCCATCCGTTCCGAATTACTTG 58.472 45.455 0.00 0.00 0.00 3.16
4959 5815 3.055675 TCCATCCGTTCCGAATTACTTGT 60.056 43.478 0.00 0.00 0.00 3.16
4960 5816 3.308866 CCATCCGTTCCGAATTACTTGTC 59.691 47.826 0.00 0.00 0.00 3.18
4961 5817 3.947910 TCCGTTCCGAATTACTTGTCT 57.052 42.857 0.00 0.00 0.00 3.41
4963 5819 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
4964 5820 3.991773 CCGTTCCGAATTACTTGTCTTGA 59.008 43.478 0.00 0.00 0.00 3.02
4968 5824 7.075741 CGTTCCGAATTACTTGTCTTGAATTT 58.924 34.615 0.00 0.00 0.00 1.82
4970 5826 7.504924 TCCGAATTACTTGTCTTGAATTTGT 57.495 32.000 0.00 0.00 0.00 2.83
4971 5827 7.581476 TCCGAATTACTTGTCTTGAATTTGTC 58.419 34.615 0.00 0.00 0.00 3.18
4972 5828 7.444183 TCCGAATTACTTGTCTTGAATTTGTCT 59.556 33.333 0.00 0.00 0.00 3.41
4973 5829 8.717821 CCGAATTACTTGTCTTGAATTTGTCTA 58.282 33.333 0.00 0.00 0.00 2.59
4974 5830 9.746711 CGAATTACTTGTCTTGAATTTGTCTAG 57.253 33.333 0.00 0.00 0.00 2.43
4979 5835 8.467402 ACTTGTCTTGAATTTGTCTAGATACG 57.533 34.615 0.00 0.00 39.77 3.06
4980 5836 7.545965 ACTTGTCTTGAATTTGTCTAGATACGG 59.454 37.037 0.00 0.00 39.77 4.02
4982 5838 7.033791 TGTCTTGAATTTGTCTAGATACGGAC 58.966 38.462 0.00 0.00 39.77 4.79
4983 5839 6.196724 GTCTTGAATTTGTCTAGATACGGACG 59.803 42.308 0.00 0.00 39.77 4.79
4984 5840 5.571784 TGAATTTGTCTAGATACGGACGT 57.428 39.130 1.98 1.98 35.45 4.34
4986 5842 7.268199 TGAATTTGTCTAGATACGGACGTAT 57.732 36.000 16.33 16.33 43.24 3.06
5001 5857 7.982371 ACGGACGTATCTAAACTCATTTTAG 57.018 36.000 0.00 0.00 45.78 1.85
5002 5858 7.542025 ACGGACGTATCTAAACTCATTTTAGT 58.458 34.615 0.00 0.00 44.99 2.24
5004 5860 7.514747 CGGACGTATCTAAACTCATTTTAGTGC 60.515 40.741 0.00 0.00 44.99 4.40
5005 5861 7.491696 GGACGTATCTAAACTCATTTTAGTGCT 59.508 37.037 0.00 0.00 44.99 4.40
5006 5862 9.512435 GACGTATCTAAACTCATTTTAGTGCTA 57.488 33.333 0.00 0.00 44.99 3.49
5007 5863 9.517609 ACGTATCTAAACTCATTTTAGTGCTAG 57.482 33.333 0.00 0.00 44.99 3.42
5008 5864 8.969267 CGTATCTAAACTCATTTTAGTGCTAGG 58.031 37.037 4.20 0.00 44.99 3.02
5009 5865 9.819267 GTATCTAAACTCATTTTAGTGCTAGGT 57.181 33.333 4.20 0.00 44.99 3.08
5011 5867 9.819267 ATCTAAACTCATTTTAGTGCTAGGTAC 57.181 33.333 4.20 0.00 44.99 3.34
5012 5868 8.255905 TCTAAACTCATTTTAGTGCTAGGTACC 58.744 37.037 2.73 2.73 44.99 3.34
5013 5869 6.622427 AACTCATTTTAGTGCTAGGTACCT 57.378 37.500 20.57 20.57 0.00 3.08
5014 5870 6.622427 ACTCATTTTAGTGCTAGGTACCTT 57.378 37.500 22.11 3.66 0.00 3.50
5015 5871 6.641474 ACTCATTTTAGTGCTAGGTACCTTC 58.359 40.000 22.11 13.07 0.00 3.46
5016 5872 5.657474 TCATTTTAGTGCTAGGTACCTTCG 58.343 41.667 22.11 12.96 0.00 3.79
5017 5873 5.186409 TCATTTTAGTGCTAGGTACCTTCGT 59.814 40.000 22.11 6.74 0.00 3.85
5018 5874 6.377996 TCATTTTAGTGCTAGGTACCTTCGTA 59.622 38.462 22.11 8.66 0.00 3.43
5019 5875 6.780457 TTTTAGTGCTAGGTACCTTCGTAT 57.220 37.500 22.11 6.79 0.00 3.06
5020 5876 6.382869 TTTAGTGCTAGGTACCTTCGTATC 57.617 41.667 22.11 6.57 0.00 2.24
5021 5877 4.167652 AGTGCTAGGTACCTTCGTATCT 57.832 45.455 22.11 8.75 39.36 1.98
5022 5878 5.301835 AGTGCTAGGTACCTTCGTATCTA 57.698 43.478 22.11 0.00 37.16 1.98
5030 5886 7.274603 AGGTACCTTCGTATCTAGACAAATC 57.725 40.000 9.21 0.00 33.96 2.17
5031 5887 7.061688 AGGTACCTTCGTATCTAGACAAATCT 58.938 38.462 9.21 0.00 33.96 2.40
5032 5888 8.216423 AGGTACCTTCGTATCTAGACAAATCTA 58.784 37.037 9.21 0.00 33.96 1.98
5033 5889 8.844244 GGTACCTTCGTATCTAGACAAATCTAA 58.156 37.037 4.06 0.00 36.98 2.10
5034 5890 9.881529 GTACCTTCGTATCTAGACAAATCTAAG 57.118 37.037 0.00 0.00 36.98 2.18
5035 5891 8.749026 ACCTTCGTATCTAGACAAATCTAAGA 57.251 34.615 0.00 0.00 36.98 2.10
5036 5892 8.623030 ACCTTCGTATCTAGACAAATCTAAGAC 58.377 37.037 0.00 0.00 36.98 3.01
5037 5893 8.622157 CCTTCGTATCTAGACAAATCTAAGACA 58.378 37.037 0.00 0.00 36.98 3.41
5040 5896 9.175312 TCGTATCTAGACAAATCTAAGACAAGT 57.825 33.333 0.00 0.00 36.98 3.16
5047 5903 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
5048 5904 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
5049 5905 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
5050 5906 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
5090 5946 5.925509 AGAAGAAGCCACTTGTACTGTTAA 58.074 37.500 0.00 0.00 0.00 2.01
5184 6043 3.173151 TCTTTCTCTAGTGACATGGCCA 58.827 45.455 8.56 8.56 0.00 5.36
5185 6044 3.776969 TCTTTCTCTAGTGACATGGCCAT 59.223 43.478 14.09 14.09 0.00 4.40
5186 6045 3.548745 TTCTCTAGTGACATGGCCATG 57.451 47.619 38.53 38.53 44.15 3.66
5198 6057 4.297299 CATGGCCATGTGTCATTTAGTC 57.703 45.455 33.68 0.00 34.23 2.59
5199 6058 3.431673 TGGCCATGTGTCATTTAGTCA 57.568 42.857 0.00 0.00 0.00 3.41
5200 6059 3.760738 TGGCCATGTGTCATTTAGTCAA 58.239 40.909 0.00 0.00 0.00 3.18
5201 6060 4.343231 TGGCCATGTGTCATTTAGTCAAT 58.657 39.130 0.00 0.00 0.00 2.57
5202 6061 4.771577 TGGCCATGTGTCATTTAGTCAATT 59.228 37.500 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.217750 GTAGCCACACATGACACACAA 58.782 47.619 0.00 0.00 0.00 3.33
203 209 0.242017 GATTAATGAGCCGGGCATGC 59.758 55.000 23.09 9.90 0.00 4.06
223 229 2.887783 AGGCGATAGATAGATATGGCGG 59.112 50.000 0.00 0.00 37.65 6.13
225 231 4.261825 GGTGAGGCGATAGATAGATATGGC 60.262 50.000 0.00 0.00 36.48 4.40
289 302 2.357275 CGTTTGTTACGGGGGCGA 60.357 61.111 0.00 0.00 46.42 5.54
321 334 7.497925 TGTATGTATGTTTGCACACTTTGTA 57.502 32.000 4.37 0.00 35.03 2.41
329 342 9.811655 GATGTATGTATGTATGTATGTTTGCAC 57.188 33.333 0.00 0.00 0.00 4.57
339 352 9.682465 AGGTATACGAGATGTATGTATGTATGT 57.318 33.333 0.00 0.00 43.63 2.29
342 355 8.953313 CCAAGGTATACGAGATGTATGTATGTA 58.047 37.037 0.00 0.00 43.63 2.29
378 432 0.823769 CCCTCCACCGATCGATCTCA 60.824 60.000 22.43 1.77 0.00 3.27
405 459 1.682740 CCTACGACTCTTCCTCCCTC 58.317 60.000 0.00 0.00 0.00 4.30
410 464 3.113824 TCTCTACCCTACGACTCTTCCT 58.886 50.000 0.00 0.00 0.00 3.36
411 465 3.134442 TCTCTCTACCCTACGACTCTTCC 59.866 52.174 0.00 0.00 0.00 3.46
413 467 4.032310 TCTCTCTCTACCCTACGACTCTT 58.968 47.826 0.00 0.00 0.00 2.85
416 470 3.640029 CTCTCTCTCTCTACCCTACGACT 59.360 52.174 0.00 0.00 0.00 4.18
419 473 3.893200 TCTCTCTCTCTCTCTACCCTACG 59.107 52.174 0.00 0.00 0.00 3.51
420 474 5.145564 TCTCTCTCTCTCTCTCTACCCTAC 58.854 50.000 0.00 0.00 0.00 3.18
421 475 5.412617 TCTCTCTCTCTCTCTCTACCCTA 57.587 47.826 0.00 0.00 0.00 3.53
422 476 4.280789 TCTCTCTCTCTCTCTCTACCCT 57.719 50.000 0.00 0.00 0.00 4.34
423 477 4.593206 TGATCTCTCTCTCTCTCTCTACCC 59.407 50.000 0.00 0.00 0.00 3.69
424 478 5.808366 TGATCTCTCTCTCTCTCTCTACC 57.192 47.826 0.00 0.00 0.00 3.18
425 479 7.445121 TGATTGATCTCTCTCTCTCTCTCTAC 58.555 42.308 0.00 0.00 0.00 2.59
426 480 7.290948 ACTGATTGATCTCTCTCTCTCTCTCTA 59.709 40.741 0.00 0.00 0.00 2.43
427 481 6.100859 ACTGATTGATCTCTCTCTCTCTCTCT 59.899 42.308 0.00 0.00 0.00 3.10
428 482 6.294473 ACTGATTGATCTCTCTCTCTCTCTC 58.706 44.000 0.00 0.00 0.00 3.20
429 483 6.257994 ACTGATTGATCTCTCTCTCTCTCT 57.742 41.667 0.00 0.00 0.00 3.10
430 484 7.445121 TCTACTGATTGATCTCTCTCTCTCTC 58.555 42.308 0.00 0.00 0.00 3.20
431 485 7.379059 TCTACTGATTGATCTCTCTCTCTCT 57.621 40.000 0.00 0.00 0.00 3.10
432 486 6.652481 CCTCTACTGATTGATCTCTCTCTCTC 59.348 46.154 0.00 0.00 0.00 3.20
433 487 6.537355 CCTCTACTGATTGATCTCTCTCTCT 58.463 44.000 0.00 0.00 0.00 3.10
434 488 5.182001 GCCTCTACTGATTGATCTCTCTCTC 59.818 48.000 0.00 0.00 0.00 3.20
526 584 1.685355 GAGGAGAGAGGAAGCTGGCC 61.685 65.000 0.00 0.00 0.00 5.36
551 628 2.040412 AGGGCCCAAGAGTGTAAGAAAG 59.960 50.000 27.56 0.00 0.00 2.62
552 629 2.062636 AGGGCCCAAGAGTGTAAGAAA 58.937 47.619 27.56 0.00 0.00 2.52
611 689 2.123251 GGGGATGAGGGCGAGAGA 60.123 66.667 0.00 0.00 0.00 3.10
619 697 3.174265 GCTGGGGAGGGGATGAGG 61.174 72.222 0.00 0.00 0.00 3.86
621 699 4.037413 TGGCTGGGGAGGGGATGA 62.037 66.667 0.00 0.00 0.00 2.92
663 756 1.572689 GGGAAGGGAAGGGAAGGTCC 61.573 65.000 0.00 0.00 35.23 4.46
664 757 0.550393 AGGGAAGGGAAGGGAAGGTC 60.550 60.000 0.00 0.00 0.00 3.85
665 758 0.804255 TAGGGAAGGGAAGGGAAGGT 59.196 55.000 0.00 0.00 0.00 3.50
673 766 3.178865 CTGGTACAAGTAGGGAAGGGAA 58.821 50.000 0.00 0.00 38.70 3.97
674 767 2.561297 CCTGGTACAAGTAGGGAAGGGA 60.561 54.545 0.00 0.00 38.70 4.20
741 837 0.478507 GGAGAGGGAGAGAGGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
742 838 1.349542 CGGAGAGGGAGAGAGGGAGA 61.350 65.000 0.00 0.00 0.00 3.71
743 839 1.150536 CGGAGAGGGAGAGAGGGAG 59.849 68.421 0.00 0.00 0.00 4.30
744 840 3.063197 GCGGAGAGGGAGAGAGGGA 62.063 68.421 0.00 0.00 0.00 4.20
745 841 2.520741 GCGGAGAGGGAGAGAGGG 60.521 72.222 0.00 0.00 0.00 4.30
746 842 2.520741 GGCGGAGAGGGAGAGAGG 60.521 72.222 0.00 0.00 0.00 3.69
747 843 2.520741 GGGCGGAGAGGGAGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
748 844 4.507916 CGGGCGGAGAGGGAGAGA 62.508 72.222 0.00 0.00 0.00 3.10
765 861 3.050703 CACCGAGTGAGTATGGTGC 57.949 57.895 0.00 0.00 44.69 5.01
816 912 3.056328 GGTTTCCGGGCTGTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
817 913 3.884774 TGGTTTCCGGGCTGTGCT 61.885 61.111 0.00 0.00 0.00 4.40
818 914 3.670377 GTGGTTTCCGGGCTGTGC 61.670 66.667 0.00 0.00 0.00 4.57
819 915 1.178534 ATTGTGGTTTCCGGGCTGTG 61.179 55.000 0.00 0.00 0.00 3.66
827 923 6.844097 TGTAGGGAATTAATTGTGGTTTCC 57.156 37.500 5.17 0.00 36.04 3.13
864 960 1.068921 GGAGCAATCGAGAGGGAGC 59.931 63.158 0.00 0.00 0.00 4.70
866 962 0.614697 TGTGGAGCAATCGAGAGGGA 60.615 55.000 0.00 0.00 0.00 4.20
888 984 1.705186 ACAGGTGGTTGGCTGTAGAAT 59.295 47.619 0.00 0.00 0.00 2.40
946 1042 4.128388 CAAATTGTCCGGCGGGGC 62.128 66.667 27.98 19.47 38.88 5.80
964 1060 2.754658 ACCACCGCCTCTACTCCG 60.755 66.667 0.00 0.00 0.00 4.63
966 1062 2.184579 GCACCACCGCCTCTACTC 59.815 66.667 0.00 0.00 0.00 2.59
1025 1147 3.437795 CCCCGTACTGAGACGCGT 61.438 66.667 13.85 13.85 41.56 6.01
1134 1259 3.060615 GGGTTCTGCTGCTGCTGG 61.061 66.667 19.63 11.50 40.48 4.85
1396 1530 6.033091 GGAAATTACCGTGCGATTTTACTTTG 59.967 38.462 0.00 0.00 0.00 2.77
1406 1540 1.149987 GTGTGGAAATTACCGTGCGA 58.850 50.000 0.00 0.00 0.00 5.10
1532 1666 5.593909 TCATTTCATGTGGAACCATACCATC 59.406 40.000 0.00 0.00 39.69 3.51
1533 1667 5.517924 TCATTTCATGTGGAACCATACCAT 58.482 37.500 0.00 0.00 39.69 3.55
1534 1668 4.928263 TCATTTCATGTGGAACCATACCA 58.072 39.130 0.00 0.00 34.56 3.25
1535 1669 5.221303 CCATCATTTCATGTGGAACCATACC 60.221 44.000 0.00 0.00 35.09 2.73
1536 1670 5.737063 GCCATCATTTCATGTGGAACCATAC 60.737 44.000 2.10 0.00 35.09 2.39
1537 1671 4.341806 GCCATCATTTCATGTGGAACCATA 59.658 41.667 2.10 0.00 35.09 2.74
1597 1747 3.496331 CCAGGAAAGGCAAGGAAAACTA 58.504 45.455 0.00 0.00 0.00 2.24
1629 1779 0.179189 CTGAAACCGAGGCGCATTTC 60.179 55.000 10.83 11.07 33.87 2.17
1668 1818 1.108132 CCCTACGCCTACCACTCCTC 61.108 65.000 0.00 0.00 0.00 3.71
1856 2018 5.104982 TGGGGATGGAAATAAACAAAGATGC 60.105 40.000 0.00 0.00 0.00 3.91
1857 2019 6.543430 TGGGGATGGAAATAAACAAAGATG 57.457 37.500 0.00 0.00 0.00 2.90
1858 2020 7.754091 AATGGGGATGGAAATAAACAAAGAT 57.246 32.000 0.00 0.00 0.00 2.40
1859 2021 7.566658 AAATGGGGATGGAAATAAACAAAGA 57.433 32.000 0.00 0.00 0.00 2.52
1874 2040 3.756082 TGGCAGTAGAAAAATGGGGAT 57.244 42.857 0.00 0.00 0.00 3.85
1915 2089 1.712056 TCTCGTCTTTTGAGGGGTGA 58.288 50.000 0.00 0.00 36.30 4.02
1916 2090 2.350522 CATCTCGTCTTTTGAGGGGTG 58.649 52.381 0.00 0.00 36.30 4.61
1917 2091 1.279271 CCATCTCGTCTTTTGAGGGGT 59.721 52.381 0.00 0.00 36.30 4.95
1918 2092 2.014068 GCCATCTCGTCTTTTGAGGGG 61.014 57.143 0.00 0.00 36.22 4.79
1944 2118 9.965902 ATATAGGCAGAATGGGAATTAGTTAAG 57.034 33.333 0.00 0.00 35.86 1.85
2024 2212 3.546218 GCGTGTGTGTCTTCTCTTTTTCC 60.546 47.826 0.00 0.00 0.00 3.13
2036 2224 1.201825 GAAGCTTCGCGTGTGTGTC 59.798 57.895 11.40 0.00 0.00 3.67
2065 2253 0.930726 GAGGAGGAGGAGGAGGAAGA 59.069 60.000 0.00 0.00 0.00 2.87
2066 2254 0.105709 GGAGGAGGAGGAGGAGGAAG 60.106 65.000 0.00 0.00 0.00 3.46
2067 2255 0.556380 AGGAGGAGGAGGAGGAGGAA 60.556 60.000 0.00 0.00 0.00 3.36
2068 2256 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2069 2257 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
2070 2258 0.933700 AAGAGGAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
2071 2259 0.633921 CAAGAGGAGGAGGAGGAGGA 59.366 60.000 0.00 0.00 0.00 3.71
2072 2260 0.338120 ACAAGAGGAGGAGGAGGAGG 59.662 60.000 0.00 0.00 0.00 4.30
2073 2261 3.390175 TTACAAGAGGAGGAGGAGGAG 57.610 52.381 0.00 0.00 0.00 3.69
2074 2262 3.442076 GTTTACAAGAGGAGGAGGAGGA 58.558 50.000 0.00 0.00 0.00 3.71
2075 2263 2.166664 CGTTTACAAGAGGAGGAGGAGG 59.833 54.545 0.00 0.00 0.00 4.30
2076 2264 2.417515 GCGTTTACAAGAGGAGGAGGAG 60.418 54.545 0.00 0.00 0.00 3.69
2077 2265 1.549170 GCGTTTACAAGAGGAGGAGGA 59.451 52.381 0.00 0.00 0.00 3.71
2078 2266 1.275291 TGCGTTTACAAGAGGAGGAGG 59.725 52.381 0.00 0.00 0.00 4.30
2079 2267 2.338500 GTGCGTTTACAAGAGGAGGAG 58.662 52.381 0.00 0.00 0.00 3.69
2080 2268 1.001633 GGTGCGTTTACAAGAGGAGGA 59.998 52.381 0.00 0.00 0.00 3.71
2081 2269 1.439679 GGTGCGTTTACAAGAGGAGG 58.560 55.000 0.00 0.00 0.00 4.30
2088 2276 2.634777 GCAGCGGTGCGTTTACAA 59.365 55.556 25.22 0.00 40.71 2.41
2123 2311 3.415457 AAGGACTGGAAGCAAGAGAAG 57.585 47.619 0.00 0.00 37.60 2.85
2210 2402 2.287849 GCAAGCTTCCTGAGACCAAAAC 60.288 50.000 0.00 0.00 0.00 2.43
2211 2403 1.956477 GCAAGCTTCCTGAGACCAAAA 59.044 47.619 0.00 0.00 0.00 2.44
2216 2408 0.739112 CTCCGCAAGCTTCCTGAGAC 60.739 60.000 2.81 0.00 0.00 3.36
2427 2622 4.400109 GCGGCACTGACGACGAGA 62.400 66.667 8.96 0.00 35.20 4.04
2595 2839 1.078918 CATGCACGGGAAGCTCAGA 60.079 57.895 0.00 0.00 0.00 3.27
2609 2853 1.226717 GACTCGGAGTCGGACATGC 60.227 63.158 21.28 0.00 35.28 4.06
2718 2965 3.026694 AGCCATCATCTTTTTGCTACCC 58.973 45.455 0.00 0.00 0.00 3.69
2721 2968 6.594788 AAGAAAGCCATCATCTTTTTGCTA 57.405 33.333 0.00 0.00 34.24 3.49
2727 3004 3.944015 CCTCGAAGAAAGCCATCATCTTT 59.056 43.478 0.00 0.00 36.55 2.52
3072 3445 3.460672 CTGTGTGGCCTGTGACGGT 62.461 63.158 3.32 0.00 0.00 4.83
3160 3653 1.821759 CCTTGTGTGGTGGTTGCGA 60.822 57.895 0.00 0.00 0.00 5.10
3838 4376 2.287909 GCAAGGTAAAAATGGTGTGCGA 60.288 45.455 0.00 0.00 0.00 5.10
3863 4401 2.259618 GATCGAGCTCAAACACGCTAA 58.740 47.619 15.40 0.00 36.45 3.09
3892 4432 1.271707 ACCCCGAAAAACATCCATCGT 60.272 47.619 0.00 0.00 33.65 3.73
4184 4724 0.824109 CCTACTGAACCATGGCGAGA 59.176 55.000 13.04 0.00 0.00 4.04
4205 4745 2.515523 ATCCATGGTGCTGAGCGC 60.516 61.111 12.58 9.96 38.45 5.92
4346 4887 2.277120 CGGTCGTCGTCGGTGATC 60.277 66.667 1.55 0.00 37.69 2.92
4362 4903 5.240844 AGGAATTACAAGGTGAAAAGGAACG 59.759 40.000 0.00 0.00 0.00 3.95
4520 5061 3.502211 ACAATTCTTGGCCTTAACACGAG 59.498 43.478 3.32 0.00 34.12 4.18
4574 5116 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4575 5117 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4576 5118 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
4577 5119 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4578 5120 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4579 5121 9.898152 AAAGAAGAAGAAGAAGAAGAAGAAGAA 57.102 29.630 0.00 0.00 0.00 2.52
4580 5122 9.541143 GAAAGAAGAAGAAGAAGAAGAAGAAGA 57.459 33.333 0.00 0.00 0.00 2.87
4581 5123 9.546428 AGAAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
4582 5124 9.323985 CAGAAAGAAGAAGAAGAAGAAGAAGAA 57.676 33.333 0.00 0.00 0.00 2.52
4583 5125 7.440856 GCAGAAAGAAGAAGAAGAAGAAGAAGA 59.559 37.037 0.00 0.00 0.00 2.87
4658 5200 5.362143 CCTCTGATGAGTCTGATCCAAGTTA 59.638 44.000 0.00 0.00 38.61 2.24
4672 5214 1.065854 AGTTTTCGGCCCTCTGATGAG 60.066 52.381 0.00 0.00 39.92 2.90
4673 5215 0.984230 AGTTTTCGGCCCTCTGATGA 59.016 50.000 0.00 0.00 0.00 2.92
4674 5216 1.089920 CAGTTTTCGGCCCTCTGATG 58.910 55.000 0.00 0.00 0.00 3.07
4675 5217 0.693049 ACAGTTTTCGGCCCTCTGAT 59.307 50.000 0.00 0.00 0.00 2.90
4676 5218 0.472471 AACAGTTTTCGGCCCTCTGA 59.528 50.000 0.00 0.00 0.00 3.27
4677 5219 1.318576 AAACAGTTTTCGGCCCTCTG 58.681 50.000 0.00 1.42 0.00 3.35
4678 5220 2.067365 AAAACAGTTTTCGGCCCTCT 57.933 45.000 5.37 0.00 0.00 3.69
4683 5225 3.943958 ACTCGTAAAAACAGTTTTCGGC 58.056 40.909 11.77 4.79 38.01 5.54
4697 5239 9.695526 ACACTGTAACAACATTTATACTCGTAA 57.304 29.630 0.00 0.00 0.00 3.18
4699 5241 9.865321 ATACACTGTAACAACATTTATACTCGT 57.135 29.630 0.00 0.00 0.00 4.18
4713 5568 5.467399 GCCACACAAAGTATACACTGTAACA 59.533 40.000 5.50 0.00 34.36 2.41
4751 5606 0.457851 CCACACAAAGTTCCCGCAAA 59.542 50.000 0.00 0.00 0.00 3.68
4771 5626 6.457851 ACATGTGAACATATGATCGAATCG 57.542 37.500 10.38 0.00 34.26 3.34
4772 5627 9.507280 AAAAACATGTGAACATATGATCGAATC 57.493 29.630 10.38 0.76 34.26 2.52
4776 5631 7.028962 ACCAAAAACATGTGAACATATGATCG 58.971 34.615 10.38 0.00 34.26 3.69
4809 5664 9.960056 GGTGGACCACGTAGAATCTCTACAATG 62.960 48.148 18.40 10.02 41.48 2.82
4810 5665 8.078250 GGTGGACCACGTAGAATCTCTACAAT 62.078 46.154 18.40 0.00 41.48 2.71
4811 5666 6.838755 GGTGGACCACGTAGAATCTCTACAA 61.839 48.000 18.40 0.00 41.48 2.41
4812 5667 5.405202 GGTGGACCACGTAGAATCTCTACA 61.405 50.000 18.40 0.00 41.48 2.74
4891 5746 6.855836 TGATGAGCTCATAATTTCAAACACC 58.144 36.000 28.78 12.06 36.57 4.16
4893 5748 8.525316 ACATTGATGAGCTCATAATTTCAAACA 58.475 29.630 28.78 15.85 36.57 2.83
4894 5749 8.922058 ACATTGATGAGCTCATAATTTCAAAC 57.078 30.769 28.78 13.46 36.57 2.93
4945 5801 7.936584 ACAAATTCAAGACAAGTAATTCGGAA 58.063 30.769 0.00 0.00 0.00 4.30
4946 5802 7.444183 AGACAAATTCAAGACAAGTAATTCGGA 59.556 33.333 0.00 0.00 0.00 4.55
4947 5803 7.584987 AGACAAATTCAAGACAAGTAATTCGG 58.415 34.615 0.00 0.00 0.00 4.30
4948 5804 9.746711 CTAGACAAATTCAAGACAAGTAATTCG 57.253 33.333 0.00 0.00 0.00 3.34
4953 5809 9.569167 CGTATCTAGACAAATTCAAGACAAGTA 57.431 33.333 0.00 0.00 0.00 2.24
4954 5810 7.545965 CCGTATCTAGACAAATTCAAGACAAGT 59.454 37.037 0.00 0.00 0.00 3.16
4955 5811 7.759886 TCCGTATCTAGACAAATTCAAGACAAG 59.240 37.037 0.00 0.00 0.00 3.16
4956 5812 7.544566 GTCCGTATCTAGACAAATTCAAGACAA 59.455 37.037 0.00 0.00 33.08 3.18
4958 5814 6.196724 CGTCCGTATCTAGACAAATTCAAGAC 59.803 42.308 0.00 0.00 33.08 3.01
4959 5815 6.127814 ACGTCCGTATCTAGACAAATTCAAGA 60.128 38.462 0.00 0.00 33.08 3.02
4960 5816 6.034591 ACGTCCGTATCTAGACAAATTCAAG 58.965 40.000 0.00 0.00 33.08 3.02
4961 5817 5.957798 ACGTCCGTATCTAGACAAATTCAA 58.042 37.500 0.00 0.00 33.08 2.69
4988 5844 8.142485 AGGTACCTAGCACTAAAATGAGTTTA 57.858 34.615 14.41 0.00 0.00 2.01
4991 5847 6.622427 AAGGTACCTAGCACTAAAATGAGT 57.378 37.500 16.67 0.00 0.00 3.41
4992 5848 5.749109 CGAAGGTACCTAGCACTAAAATGAG 59.251 44.000 16.67 0.00 0.00 2.90
4993 5849 5.186409 ACGAAGGTACCTAGCACTAAAATGA 59.814 40.000 16.67 0.00 0.00 2.57
4994 5850 5.416947 ACGAAGGTACCTAGCACTAAAATG 58.583 41.667 16.67 0.00 0.00 2.32
4995 5851 5.672421 ACGAAGGTACCTAGCACTAAAAT 57.328 39.130 16.67 0.00 0.00 1.82
4996 5852 6.604795 AGATACGAAGGTACCTAGCACTAAAA 59.395 38.462 16.67 0.00 0.00 1.52
4997 5853 6.125029 AGATACGAAGGTACCTAGCACTAAA 58.875 40.000 16.67 0.00 0.00 1.85
4998 5854 5.688807 AGATACGAAGGTACCTAGCACTAA 58.311 41.667 16.67 0.00 0.00 2.24
4999 5855 5.301835 AGATACGAAGGTACCTAGCACTA 57.698 43.478 16.67 3.56 0.00 2.74
5000 5856 4.167652 AGATACGAAGGTACCTAGCACT 57.832 45.455 16.67 7.56 0.00 4.40
5001 5857 5.179182 GTCTAGATACGAAGGTACCTAGCAC 59.821 48.000 16.67 6.55 41.08 4.40
5002 5858 5.163269 TGTCTAGATACGAAGGTACCTAGCA 60.163 44.000 16.67 3.63 41.08 3.49
5004 5860 7.798596 TTTGTCTAGATACGAAGGTACCTAG 57.201 40.000 16.67 15.00 42.20 3.02
5005 5861 8.216423 AGATTTGTCTAGATACGAAGGTACCTA 58.784 37.037 16.67 0.00 0.00 3.08
5006 5862 7.061688 AGATTTGTCTAGATACGAAGGTACCT 58.938 38.462 9.21 9.21 0.00 3.08
5007 5863 7.274603 AGATTTGTCTAGATACGAAGGTACC 57.725 40.000 2.73 2.73 0.00 3.34
5008 5864 9.881529 CTTAGATTTGTCTAGATACGAAGGTAC 57.118 37.037 0.00 0.00 0.00 3.34
5009 5865 9.842775 TCTTAGATTTGTCTAGATACGAAGGTA 57.157 33.333 0.00 0.00 0.00 3.08
5010 5866 8.623030 GTCTTAGATTTGTCTAGATACGAAGGT 58.377 37.037 0.00 0.00 0.00 3.50
5011 5867 8.622157 TGTCTTAGATTTGTCTAGATACGAAGG 58.378 37.037 0.00 0.00 0.00 3.46
5014 5870 9.175312 ACTTGTCTTAGATTTGTCTAGATACGA 57.825 33.333 0.00 0.00 0.00 3.43
5021 5877 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
5022 5878 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
5023 5879 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
5024 5880 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
5025 5881 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
5026 5882 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
5027 5883 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
5028 5884 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
5029 5885 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
5030 5886 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
5031 5887 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
5032 5888 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
5033 5889 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
5034 5890 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5035 5891 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5036 5892 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5037 5893 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
5038 5894 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
5039 5895 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
5040 5896 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
5041 5897 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
5042 5898 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
5043 5899 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
5044 5900 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
5045 5901 0.893447 AAACTACTCCCTCCGTTCCG 59.107 55.000 0.00 0.00 0.00 4.30
5046 5902 5.136105 TCTATAAACTACTCCCTCCGTTCC 58.864 45.833 0.00 0.00 0.00 3.62
5047 5903 6.545298 TCTTCTATAAACTACTCCCTCCGTTC 59.455 42.308 0.00 0.00 0.00 3.95
5048 5904 6.430007 TCTTCTATAAACTACTCCCTCCGTT 58.570 40.000 0.00 0.00 0.00 4.44
5049 5905 6.011122 TCTTCTATAAACTACTCCCTCCGT 57.989 41.667 0.00 0.00 0.00 4.69
5050 5906 6.515365 GCTTCTTCTATAAACTACTCCCTCCG 60.515 46.154 0.00 0.00 0.00 4.63
5051 5907 6.239373 GGCTTCTTCTATAAACTACTCCCTCC 60.239 46.154 0.00 0.00 0.00 4.30
5052 5908 6.324254 TGGCTTCTTCTATAAACTACTCCCTC 59.676 42.308 0.00 0.00 0.00 4.30
5053 5909 6.098552 GTGGCTTCTTCTATAAACTACTCCCT 59.901 42.308 0.00 0.00 0.00 4.20
5054 5910 6.098552 AGTGGCTTCTTCTATAAACTACTCCC 59.901 42.308 0.00 0.00 0.00 4.30
5055 5911 7.114866 AGTGGCTTCTTCTATAAACTACTCC 57.885 40.000 0.00 0.00 0.00 3.85
5056 5912 8.035984 ACAAGTGGCTTCTTCTATAAACTACTC 58.964 37.037 0.00 0.00 0.00 2.59
5057 5913 7.908453 ACAAGTGGCTTCTTCTATAAACTACT 58.092 34.615 0.00 0.00 0.00 2.57
5058 5914 9.085250 GTACAAGTGGCTTCTTCTATAAACTAC 57.915 37.037 0.00 0.00 0.00 2.73
5090 5946 9.100197 AGTATGTGGGGTGAAGAAAAATAATTT 57.900 29.630 0.00 0.00 0.00 1.82
5113 5969 5.892119 CAGTTTCCTGATCCTACTACCAGTA 59.108 44.000 0.00 0.00 41.50 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.