Multiple sequence alignment - TraesCS2A01G384100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G384100 chr2A 100.000 5429 0 0 1 5429 628743415 628748843 0.000000e+00 10026.0
1 TraesCS2A01G384100 chr2A 94.958 119 4 2 5074 5191 391874422 391874305 9.290000e-43 185.0
2 TraesCS2A01G384100 chr2D 94.107 2766 136 13 1736 4484 484859746 484862501 0.000000e+00 4180.0
3 TraesCS2A01G384100 chr2D 90.959 3086 213 20 1012 4068 484882206 484885254 0.000000e+00 4093.0
4 TraesCS2A01G384100 chr2D 90.839 3002 191 26 1971 4907 484911785 484914767 0.000000e+00 3943.0
5 TraesCS2A01G384100 chr2D 92.921 1568 82 13 211 1753 484858021 484859584 0.000000e+00 2254.0
6 TraesCS2A01G384100 chr2D 95.078 386 15 2 4103 4488 484885256 484885637 6.010000e-169 604.0
7 TraesCS2A01G384100 chr2D 82.240 625 75 22 4483 5080 484862529 484863144 1.740000e-139 507.0
8 TraesCS2A01G384100 chr2D 81.148 610 78 25 4483 5064 484885662 484886262 6.410000e-124 455.0
9 TraesCS2A01G384100 chr2D 95.492 244 8 1 5186 5429 484915733 484915973 2.370000e-103 387.0
10 TraesCS2A01G384100 chr2D 89.091 275 27 3 1638 1911 484911513 484911785 6.740000e-89 339.0
11 TraesCS2A01G384100 chr2D 97.917 192 3 1 4890 5080 484915492 484915683 1.130000e-86 331.0
12 TraesCS2A01G384100 chr2D 94.054 185 10 1 1451 1635 484910924 484911107 4.140000e-71 279.0
13 TraesCS2A01G384100 chr2B 94.037 2767 138 13 1736 4484 569524050 569526807 0.000000e+00 4170.0
14 TraesCS2A01G384100 chr2B 94.678 1428 59 4 338 1760 569522463 569523878 0.000000e+00 2200.0
15 TraesCS2A01G384100 chr2B 95.372 605 20 3 4483 5080 569526835 569527438 0.000000e+00 955.0
16 TraesCS2A01G384100 chr2B 91.133 203 13 3 5225 5427 569527454 569527651 2.490000e-68 270.0
17 TraesCS2A01G384100 chr2B 92.742 124 9 0 5078 5201 446213652 446213529 4.320000e-41 180.0
18 TraesCS2A01G384100 chr2B 90.000 60 4 2 144 202 366021696 366021638 5.830000e-10 76.8
19 TraesCS2A01G384100 chr2B 90.385 52 4 1 141 192 75678254 75678304 3.510000e-07 67.6
20 TraesCS2A01G384100 chr5D 90.050 201 17 1 1 198 505907146 505907346 1.940000e-64 257.0
21 TraesCS2A01G384100 chr1A 88.725 204 20 2 1 201 323182809 323182606 4.200000e-61 246.0
22 TraesCS2A01G384100 chr7A 99.074 108 1 0 5078 5185 90478743 90478850 1.540000e-45 195.0
23 TraesCS2A01G384100 chr5A 96.491 114 4 0 5079 5192 65002827 65002714 7.180000e-44 189.0
24 TraesCS2A01G384100 chr5A 96.429 112 4 0 5078 5189 492896368 492896257 9.290000e-43 185.0
25 TraesCS2A01G384100 chr3B 97.297 111 3 0 5079 5189 772411463 772411573 7.180000e-44 189.0
26 TraesCS2A01G384100 chr1B 95.690 116 3 2 5071 5185 492329847 492329961 9.290000e-43 185.0
27 TraesCS2A01G384100 chr4D 91.791 134 7 4 5079 5208 483110243 483110110 3.340000e-42 183.0
28 TraesCS2A01G384100 chr1D 95.614 114 5 0 5079 5192 447959465 447959578 3.340000e-42 183.0
29 TraesCS2A01G384100 chr4A 84.733 131 20 0 1038 1168 730153062 730153192 1.230000e-26 132.0
30 TraesCS2A01G384100 chr4A 91.379 58 5 0 144 201 714251340 714251283 4.510000e-11 80.5
31 TraesCS2A01G384100 chr5B 73.624 436 74 23 750 1168 624640998 624640587 4.410000e-26 130.0
32 TraesCS2A01G384100 chr5B 75.494 253 40 12 750 985 623367295 623367542 2.670000e-18 104.0
33 TraesCS2A01G384100 chr5B 75.494 253 40 12 750 985 627010643 627010890 2.670000e-18 104.0
34 TraesCS2A01G384100 chr5B 75.099 253 41 12 750 985 624304893 624305140 1.240000e-16 99.0
35 TraesCS2A01G384100 chr5B 74.803 254 41 13 750 985 627885575 627885823 5.790000e-15 93.5
36 TraesCS2A01G384100 chrUn 91.379 58 5 0 144 201 312890312 312890255 4.510000e-11 80.5
37 TraesCS2A01G384100 chrUn 90.164 61 6 0 141 201 324237130 324237190 4.510000e-11 80.5
38 TraesCS2A01G384100 chr7D 95.918 49 0 1 155 201 64560567 64560615 1.620000e-10 78.7
39 TraesCS2A01G384100 chr3D 90.000 60 3 2 144 201 54681827 54681769 2.100000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G384100 chr2A 628743415 628748843 5428 False 10026.000000 10026 100.000000 1 5429 1 chr2A.!!$F1 5428
1 TraesCS2A01G384100 chr2D 484858021 484863144 5123 False 2313.666667 4180 89.756000 211 5080 3 chr2D.!!$F1 4869
2 TraesCS2A01G384100 chr2D 484882206 484886262 4056 False 1717.333333 4093 89.061667 1012 5064 3 chr2D.!!$F2 4052
3 TraesCS2A01G384100 chr2D 484910924 484915973 5049 False 1055.800000 3943 93.478600 1451 5429 5 chr2D.!!$F3 3978
4 TraesCS2A01G384100 chr2B 569522463 569527651 5188 False 1898.750000 4170 93.805000 338 5427 4 chr2B.!!$F2 5089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.032017 AGTGGAACCCTAGATCGCCT 60.032 55.000 0.00 0.00 37.80 5.52 F
204 205 0.107361 ATCGCCTAGGGGAAAAACCG 60.107 55.000 30.12 13.15 40.40 4.44 F
967 996 0.183492 GCATCTTCCATGCCTACCCA 59.817 55.000 0.00 0.00 39.01 4.51 F
1536 1565 0.895530 TTGAGAAGGGCGACTCGAAT 59.104 50.000 1.63 0.00 36.11 3.34 F
2902 3562 0.038251 CAGCTACGACAGGCTCACAA 60.038 55.000 0.00 0.00 36.59 3.33 F
3622 4282 3.253188 CCGTGATGTTGACAACCTGAATT 59.747 43.478 15.59 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1376 1.493950 GAACATGCCTGCCGATCGAG 61.494 60.000 18.66 6.78 0.00 4.04 R
1636 2068 1.609208 TTGCAGTCTTGGAGAAAGCC 58.391 50.000 0.00 0.00 35.69 4.35 R
2732 3392 0.108585 TGGCAGTCCTCCACAACTTC 59.891 55.000 0.00 0.00 0.00 3.01 R
3111 3771 0.468029 ACCAAAGACCCAGTTGCCTG 60.468 55.000 0.00 0.00 38.50 4.85 R
3990 4653 0.613777 GAAGTCCTCGGACCCATGTT 59.386 55.000 12.30 0.17 45.59 2.71 R
5169 6644 1.557832 CCAAATACTCCCTCCGTTCCA 59.442 52.381 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.277962 TCCCGTCTGGTCTACTTCC 57.722 57.895 0.00 0.00 34.77 3.46
19 20 0.324091 TCCCGTCTGGTCTACTTCCC 60.324 60.000 0.00 0.00 34.77 3.97
20 21 1.328430 CCCGTCTGGTCTACTTCCCC 61.328 65.000 0.00 0.00 0.00 4.81
21 22 1.328430 CCGTCTGGTCTACTTCCCCC 61.328 65.000 0.00 0.00 0.00 5.40
22 23 0.324460 CGTCTGGTCTACTTCCCCCT 60.324 60.000 0.00 0.00 0.00 4.79
23 24 1.895866 CGTCTGGTCTACTTCCCCCTT 60.896 57.143 0.00 0.00 0.00 3.95
24 25 1.832366 GTCTGGTCTACTTCCCCCTTC 59.168 57.143 0.00 0.00 0.00 3.46
25 26 1.205055 CTGGTCTACTTCCCCCTTCC 58.795 60.000 0.00 0.00 0.00 3.46
26 27 0.253020 TGGTCTACTTCCCCCTTCCC 60.253 60.000 0.00 0.00 0.00 3.97
27 28 0.044397 GGTCTACTTCCCCCTTCCCT 59.956 60.000 0.00 0.00 0.00 4.20
28 29 1.293153 GGTCTACTTCCCCCTTCCCTA 59.707 57.143 0.00 0.00 0.00 3.53
29 30 2.293385 GGTCTACTTCCCCCTTCCCTAA 60.293 54.545 0.00 0.00 0.00 2.69
30 31 2.770802 GTCTACTTCCCCCTTCCCTAAC 59.229 54.545 0.00 0.00 0.00 2.34
31 32 2.663675 TCTACTTCCCCCTTCCCTAACT 59.336 50.000 0.00 0.00 0.00 2.24
32 33 1.968278 ACTTCCCCCTTCCCTAACTC 58.032 55.000 0.00 0.00 0.00 3.01
33 34 1.214217 CTTCCCCCTTCCCTAACTCC 58.786 60.000 0.00 0.00 0.00 3.85
34 35 0.253488 TTCCCCCTTCCCTAACTCCC 60.253 60.000 0.00 0.00 0.00 4.30
35 36 1.166973 TCCCCCTTCCCTAACTCCCT 61.167 60.000 0.00 0.00 0.00 4.20
36 37 0.694783 CCCCCTTCCCTAACTCCCTC 60.695 65.000 0.00 0.00 0.00 4.30
37 38 0.694783 CCCCTTCCCTAACTCCCTCC 60.695 65.000 0.00 0.00 0.00 4.30
38 39 0.343726 CCCTTCCCTAACTCCCTCCT 59.656 60.000 0.00 0.00 0.00 3.69
39 40 1.501582 CCTTCCCTAACTCCCTCCTG 58.498 60.000 0.00 0.00 0.00 3.86
40 41 1.008449 CCTTCCCTAACTCCCTCCTGA 59.992 57.143 0.00 0.00 0.00 3.86
41 42 2.112190 CTTCCCTAACTCCCTCCTGAC 58.888 57.143 0.00 0.00 0.00 3.51
42 43 1.394532 TCCCTAACTCCCTCCTGACT 58.605 55.000 0.00 0.00 0.00 3.41
43 44 1.288335 TCCCTAACTCCCTCCTGACTC 59.712 57.143 0.00 0.00 0.00 3.36
44 45 1.689892 CCCTAACTCCCTCCTGACTCC 60.690 61.905 0.00 0.00 0.00 3.85
45 46 1.689892 CCTAACTCCCTCCTGACTCCC 60.690 61.905 0.00 0.00 0.00 4.30
46 47 0.033405 TAACTCCCTCCTGACTCCCG 60.033 60.000 0.00 0.00 0.00 5.14
47 48 1.801302 AACTCCCTCCTGACTCCCGA 61.801 60.000 0.00 0.00 0.00 5.14
48 49 1.231641 CTCCCTCCTGACTCCCGAT 59.768 63.158 0.00 0.00 0.00 4.18
49 50 1.075970 TCCCTCCTGACTCCCGATG 60.076 63.158 0.00 0.00 0.00 3.84
50 51 2.801631 CCCTCCTGACTCCCGATGC 61.802 68.421 0.00 0.00 0.00 3.91
51 52 1.760086 CCTCCTGACTCCCGATGCT 60.760 63.158 0.00 0.00 0.00 3.79
52 53 1.333636 CCTCCTGACTCCCGATGCTT 61.334 60.000 0.00 0.00 0.00 3.91
53 54 0.103937 CTCCTGACTCCCGATGCTTC 59.896 60.000 0.00 0.00 0.00 3.86
54 55 0.324738 TCCTGACTCCCGATGCTTCT 60.325 55.000 0.00 0.00 0.00 2.85
55 56 0.179089 CCTGACTCCCGATGCTTCTG 60.179 60.000 0.00 0.00 0.00 3.02
56 57 0.179089 CTGACTCCCGATGCTTCTGG 60.179 60.000 3.91 3.91 0.00 3.86
57 58 0.904865 TGACTCCCGATGCTTCTGGT 60.905 55.000 9.44 0.00 0.00 4.00
58 59 1.112113 GACTCCCGATGCTTCTGGTA 58.888 55.000 9.44 0.00 0.00 3.25
59 60 1.067821 GACTCCCGATGCTTCTGGTAG 59.932 57.143 9.44 8.29 0.00 3.18
60 61 1.342076 ACTCCCGATGCTTCTGGTAGA 60.342 52.381 9.44 1.50 0.00 2.59
61 62 1.067821 CTCCCGATGCTTCTGGTAGAC 59.932 57.143 9.44 0.00 0.00 2.59
62 63 1.115467 CCCGATGCTTCTGGTAGACT 58.885 55.000 2.28 0.00 0.00 3.24
63 64 1.067821 CCCGATGCTTCTGGTAGACTC 59.932 57.143 2.28 0.00 0.00 3.36
64 65 1.268794 CCGATGCTTCTGGTAGACTCG 60.269 57.143 0.00 0.00 0.00 4.18
65 66 1.846541 GATGCTTCTGGTAGACTCGC 58.153 55.000 0.00 0.00 0.00 5.03
66 67 0.461961 ATGCTTCTGGTAGACTCGCC 59.538 55.000 0.00 0.00 0.00 5.54
67 68 0.898326 TGCTTCTGGTAGACTCGCCA 60.898 55.000 0.00 0.00 0.00 5.69
68 69 0.461961 GCTTCTGGTAGACTCGCCAT 59.538 55.000 0.00 0.00 33.84 4.40
69 70 1.804372 GCTTCTGGTAGACTCGCCATG 60.804 57.143 0.00 0.00 33.84 3.66
70 71 0.175760 TTCTGGTAGACTCGCCATGC 59.824 55.000 0.00 0.00 33.84 4.06
71 72 0.970427 TCTGGTAGACTCGCCATGCA 60.970 55.000 0.00 0.00 33.84 3.96
72 73 0.529337 CTGGTAGACTCGCCATGCAG 60.529 60.000 0.00 0.00 33.84 4.41
73 74 0.970427 TGGTAGACTCGCCATGCAGA 60.970 55.000 0.00 0.00 0.00 4.26
74 75 0.390860 GGTAGACTCGCCATGCAGAT 59.609 55.000 0.00 0.00 0.00 2.90
75 76 1.495878 GTAGACTCGCCATGCAGATG 58.504 55.000 0.00 0.00 0.00 2.90
87 88 4.505313 CATGCAGATGGATCTTCAATGG 57.495 45.455 0.00 0.00 33.96 3.16
88 89 2.304092 TGCAGATGGATCTTCAATGGC 58.696 47.619 0.00 0.00 34.22 4.40
89 90 1.266175 GCAGATGGATCTTCAATGGCG 59.734 52.381 0.00 0.00 34.22 5.69
90 91 1.878088 CAGATGGATCTTCAATGGCGG 59.122 52.381 0.00 0.00 34.22 6.13
91 92 1.770658 AGATGGATCTTCAATGGCGGA 59.229 47.619 0.00 0.00 31.97 5.54
92 93 2.173356 AGATGGATCTTCAATGGCGGAA 59.827 45.455 0.00 0.00 31.97 4.30
93 94 1.750193 TGGATCTTCAATGGCGGAAC 58.250 50.000 0.00 0.00 0.00 3.62
94 95 1.004161 TGGATCTTCAATGGCGGAACA 59.996 47.619 0.00 0.00 0.00 3.18
95 96 2.091541 GGATCTTCAATGGCGGAACAA 58.908 47.619 0.00 0.00 0.00 2.83
96 97 2.098117 GGATCTTCAATGGCGGAACAAG 59.902 50.000 0.00 0.00 0.00 3.16
97 98 1.533625 TCTTCAATGGCGGAACAAGG 58.466 50.000 0.00 0.00 0.00 3.61
98 99 1.202879 TCTTCAATGGCGGAACAAGGT 60.203 47.619 0.00 0.00 0.00 3.50
99 100 1.613437 CTTCAATGGCGGAACAAGGTT 59.387 47.619 0.00 0.00 0.00 3.50
100 101 2.570415 TCAATGGCGGAACAAGGTTA 57.430 45.000 0.00 0.00 0.00 2.85
101 102 2.156098 TCAATGGCGGAACAAGGTTAC 58.844 47.619 0.00 0.00 0.00 2.50
102 103 1.135803 CAATGGCGGAACAAGGTTACG 60.136 52.381 9.26 9.26 0.00 3.18
103 104 0.322322 ATGGCGGAACAAGGTTACGA 59.678 50.000 17.16 0.00 0.00 3.43
104 105 0.322322 TGGCGGAACAAGGTTACGAT 59.678 50.000 17.16 0.00 0.00 3.73
105 106 1.004595 GGCGGAACAAGGTTACGATC 58.995 55.000 17.16 5.08 0.00 3.69
106 107 1.405121 GGCGGAACAAGGTTACGATCT 60.405 52.381 17.16 0.00 0.00 2.75
107 108 2.344025 GCGGAACAAGGTTACGATCTT 58.656 47.619 17.16 0.00 0.00 2.40
108 109 2.093783 GCGGAACAAGGTTACGATCTTG 59.906 50.000 17.16 1.27 44.14 3.02
109 110 2.671396 CGGAACAAGGTTACGATCTTGG 59.329 50.000 7.95 0.00 43.20 3.61
110 111 3.671716 GGAACAAGGTTACGATCTTGGT 58.328 45.455 4.62 0.00 42.85 3.67
111 112 4.923264 GAACAAGGTTACGATCTTGGTC 57.077 45.455 2.08 2.08 46.19 4.02
112 113 4.345859 AACAAGGTTACGATCTTGGTCA 57.654 40.909 4.62 0.00 43.20 4.02
113 114 3.660865 ACAAGGTTACGATCTTGGTCAC 58.339 45.455 4.62 0.00 43.20 3.67
114 115 3.000727 CAAGGTTACGATCTTGGTCACC 58.999 50.000 0.00 0.00 37.35 4.02
115 116 1.203994 AGGTTACGATCTTGGTCACCG 59.796 52.381 0.00 0.00 36.89 4.94
116 117 1.636988 GTTACGATCTTGGTCACCGG 58.363 55.000 0.00 0.00 0.00 5.28
117 118 1.203052 GTTACGATCTTGGTCACCGGA 59.797 52.381 9.46 0.00 0.00 5.14
118 119 1.771565 TACGATCTTGGTCACCGGAT 58.228 50.000 9.46 2.15 0.00 4.18
119 120 1.771565 ACGATCTTGGTCACCGGATA 58.228 50.000 9.46 0.00 0.00 2.59
120 121 1.681793 ACGATCTTGGTCACCGGATAG 59.318 52.381 9.46 5.42 0.00 2.08
121 122 1.954382 CGATCTTGGTCACCGGATAGA 59.046 52.381 9.46 0.00 0.00 1.98
122 123 2.361119 CGATCTTGGTCACCGGATAGAA 59.639 50.000 9.46 0.00 0.00 2.10
123 124 3.718815 GATCTTGGTCACCGGATAGAAC 58.281 50.000 9.46 6.42 0.00 3.01
124 125 1.829222 TCTTGGTCACCGGATAGAACC 59.171 52.381 9.46 8.48 0.00 3.62
125 126 0.906775 TTGGTCACCGGATAGAACCC 59.093 55.000 9.46 2.30 0.00 4.11
126 127 1.324740 TGGTCACCGGATAGAACCCG 61.325 60.000 9.46 0.00 46.10 5.28
127 128 1.227176 GTCACCGGATAGAACCCGC 60.227 63.158 9.46 0.00 45.24 6.13
128 129 2.108362 CACCGGATAGAACCCGCC 59.892 66.667 9.46 0.00 45.24 6.13
129 130 3.534056 ACCGGATAGAACCCGCCG 61.534 66.667 9.46 0.00 45.24 6.46
130 131 4.963428 CCGGATAGAACCCGCCGC 62.963 72.222 0.00 0.00 45.24 6.53
131 132 4.963428 CGGATAGAACCCGCCGCC 62.963 72.222 0.00 0.00 40.54 6.13
132 133 3.547513 GGATAGAACCCGCCGCCT 61.548 66.667 0.00 0.00 0.00 5.52
133 134 2.029221 GATAGAACCCGCCGCCTC 59.971 66.667 0.00 0.00 0.00 4.70
134 135 3.843117 GATAGAACCCGCCGCCTCG 62.843 68.421 0.00 0.00 0.00 4.63
137 138 4.832608 GAACCCGCCGCCTCGATT 62.833 66.667 0.00 0.00 0.00 3.34
138 139 3.435030 GAACCCGCCGCCTCGATTA 62.435 63.158 0.00 0.00 0.00 1.75
139 140 2.911332 GAACCCGCCGCCTCGATTAA 62.911 60.000 0.00 0.00 0.00 1.40
140 141 2.202960 CCCGCCGCCTCGATTAAA 60.203 61.111 0.00 0.00 0.00 1.52
141 142 2.531376 CCCGCCGCCTCGATTAAAC 61.531 63.158 0.00 0.00 0.00 2.01
142 143 1.812093 CCGCCGCCTCGATTAAACA 60.812 57.895 0.00 0.00 0.00 2.83
143 144 1.157870 CCGCCGCCTCGATTAAACAT 61.158 55.000 0.00 0.00 0.00 2.71
144 145 0.042188 CGCCGCCTCGATTAAACATG 60.042 55.000 0.00 0.00 0.00 3.21
145 146 0.307760 GCCGCCTCGATTAAACATGG 59.692 55.000 0.00 0.00 0.00 3.66
146 147 1.948104 CCGCCTCGATTAAACATGGA 58.052 50.000 0.00 0.00 0.00 3.41
147 148 1.597663 CCGCCTCGATTAAACATGGAC 59.402 52.381 0.00 0.00 0.00 4.02
148 149 2.550978 CGCCTCGATTAAACATGGACT 58.449 47.619 0.00 0.00 0.00 3.85
149 150 2.540101 CGCCTCGATTAAACATGGACTC 59.460 50.000 0.00 0.00 0.00 3.36
150 151 3.738281 CGCCTCGATTAAACATGGACTCT 60.738 47.826 0.00 0.00 0.00 3.24
151 152 3.557595 GCCTCGATTAAACATGGACTCTG 59.442 47.826 0.00 0.00 0.00 3.35
152 153 4.680708 GCCTCGATTAAACATGGACTCTGA 60.681 45.833 0.00 0.00 0.00 3.27
153 154 5.046529 CCTCGATTAAACATGGACTCTGAG 58.953 45.833 2.45 2.45 0.00 3.35
154 155 4.433615 TCGATTAAACATGGACTCTGAGC 58.566 43.478 4.19 0.00 0.00 4.26
155 156 3.243877 CGATTAAACATGGACTCTGAGCG 59.756 47.826 4.19 0.00 0.00 5.03
156 157 3.678056 TTAAACATGGACTCTGAGCGT 57.322 42.857 4.19 0.00 0.00 5.07
157 158 2.086054 AAACATGGACTCTGAGCGTC 57.914 50.000 4.19 0.00 0.00 5.19
158 159 0.109086 AACATGGACTCTGAGCGTCG 60.109 55.000 4.19 0.00 32.24 5.12
159 160 1.875813 CATGGACTCTGAGCGTCGC 60.876 63.158 9.80 9.80 32.24 5.19
160 161 3.069980 ATGGACTCTGAGCGTCGCC 62.070 63.158 14.86 6.17 32.24 5.54
161 162 4.838486 GGACTCTGAGCGTCGCCG 62.838 72.222 14.86 2.83 32.24 6.46
181 182 2.942641 CGGAGGAAAAGTGGAACCC 58.057 57.895 0.00 0.00 37.80 4.11
182 183 0.400594 CGGAGGAAAAGTGGAACCCT 59.599 55.000 0.00 0.00 37.80 4.34
183 184 1.626825 CGGAGGAAAAGTGGAACCCTA 59.373 52.381 0.00 0.00 37.80 3.53
184 185 2.354805 CGGAGGAAAAGTGGAACCCTAG 60.355 54.545 0.00 0.00 37.80 3.02
185 186 2.910977 GGAGGAAAAGTGGAACCCTAGA 59.089 50.000 0.00 0.00 37.80 2.43
186 187 3.523972 GGAGGAAAAGTGGAACCCTAGAT 59.476 47.826 0.00 0.00 37.80 1.98
187 188 4.384318 GGAGGAAAAGTGGAACCCTAGATC 60.384 50.000 0.00 0.00 37.80 2.75
188 189 3.197983 AGGAAAAGTGGAACCCTAGATCG 59.802 47.826 0.00 0.00 37.80 3.69
189 190 2.693267 AAAGTGGAACCCTAGATCGC 57.307 50.000 0.00 0.00 37.80 4.58
190 191 0.831307 AAGTGGAACCCTAGATCGCC 59.169 55.000 0.00 0.00 37.80 5.54
191 192 0.032017 AGTGGAACCCTAGATCGCCT 60.032 55.000 0.00 0.00 37.80 5.52
192 193 1.217183 AGTGGAACCCTAGATCGCCTA 59.783 52.381 0.00 0.00 37.80 3.93
193 194 1.614413 GTGGAACCCTAGATCGCCTAG 59.386 57.143 0.00 5.13 43.56 3.02
202 203 2.711978 AGATCGCCTAGGGGAAAAAC 57.288 50.000 30.12 20.42 40.40 2.43
203 204 1.212195 AGATCGCCTAGGGGAAAAACC 59.788 52.381 30.12 16.84 40.40 3.27
204 205 0.107361 ATCGCCTAGGGGAAAAACCG 60.107 55.000 30.12 13.15 40.40 4.44
250 251 3.561313 GGAAAGTTGTGGGCTGAATCCTA 60.561 47.826 0.00 0.00 0.00 2.94
290 291 3.056328 GGCCGAAGTCAGCCCAAC 61.056 66.667 0.00 0.00 43.76 3.77
291 292 2.032681 GCCGAAGTCAGCCCAACT 59.967 61.111 0.00 0.00 0.00 3.16
292 293 1.295423 GCCGAAGTCAGCCCAACTA 59.705 57.895 0.00 0.00 0.00 2.24
294 295 0.391263 CCGAAGTCAGCCCAACTACC 60.391 60.000 0.00 0.00 0.00 3.18
295 296 0.736325 CGAAGTCAGCCCAACTACCG 60.736 60.000 0.00 0.00 0.00 4.02
296 297 0.391263 GAAGTCAGCCCAACTACCGG 60.391 60.000 0.00 0.00 0.00 5.28
297 298 1.125711 AAGTCAGCCCAACTACCGGT 61.126 55.000 13.98 13.98 0.00 5.28
298 299 1.079336 GTCAGCCCAACTACCGGTC 60.079 63.158 12.40 0.00 0.00 4.79
300 301 3.387947 AGCCCAACTACCGGTCGG 61.388 66.667 12.40 8.35 42.03 4.79
301 302 4.462280 GCCCAACTACCGGTCGGG 62.462 72.222 12.40 18.51 43.62 5.14
302 303 4.462280 CCCAACTACCGGTCGGGC 62.462 72.222 12.40 0.00 40.62 6.13
303 304 3.387947 CCAACTACCGGTCGGGCT 61.388 66.667 12.40 0.00 40.62 5.19
305 306 2.283388 AACTACCGGTCGGGCTGA 60.283 61.111 12.40 0.00 40.62 4.26
306 307 1.909781 AACTACCGGTCGGGCTGAA 60.910 57.895 12.40 0.00 40.62 3.02
309 325 0.739813 CTACCGGTCGGGCTGAAAAG 60.740 60.000 12.40 0.00 40.62 2.27
313 329 0.948678 CGGTCGGGCTGAAAAGAAAA 59.051 50.000 0.00 0.00 0.00 2.29
317 333 3.119602 GGTCGGGCTGAAAAGAAAATACC 60.120 47.826 0.00 0.00 0.00 2.73
320 336 2.230266 GGGCTGAAAAGAAAATACCGCA 59.770 45.455 0.00 0.00 0.00 5.69
386 410 2.684881 ACTTTTGTCATCCATCCATCGC 59.315 45.455 0.00 0.00 0.00 4.58
397 421 4.227134 CCATCGCCCACCTCCGAG 62.227 72.222 0.00 0.00 36.86 4.63
714 741 3.041940 CGCACTCGGTTTCGGCTT 61.042 61.111 0.00 0.00 36.95 4.35
801 830 0.602638 TGCGCGTGGACATTTTCTCT 60.603 50.000 8.43 0.00 0.00 3.10
866 895 1.153647 TACATTCTCGCCGTGCTGG 60.154 57.895 0.00 0.00 42.50 4.85
967 996 0.183492 GCATCTTCCATGCCTACCCA 59.817 55.000 0.00 0.00 39.01 4.51
1249 1278 2.037367 AGGTCTGGCTGAGGCGTA 59.963 61.111 0.35 0.00 39.81 4.42
1536 1565 0.895530 TTGAGAAGGGCGACTCGAAT 59.104 50.000 1.63 0.00 36.11 3.34
1636 2068 3.557898 GGCCCATGACTATCAGGTATGTG 60.558 52.174 0.00 0.00 0.00 3.21
1673 2105 6.281405 ACTGCAATTTATCCCTTAGAGTACG 58.719 40.000 0.00 0.00 0.00 3.67
1936 2567 3.243636 GGTTTTCACACGGAGAGACAGTA 60.244 47.826 0.00 0.00 0.00 2.74
2046 2677 5.764487 TTGATGCAATTAGTGTGTGTCAA 57.236 34.783 0.00 0.00 0.00 3.18
2063 2694 4.810491 GTGTCAATTTGCTGTTTTCCACAT 59.190 37.500 0.00 0.00 33.76 3.21
2077 2708 8.485578 TGTTTTCCACATAATCCTTAAAAGGT 57.514 30.769 8.57 0.00 46.54 3.50
2144 2776 4.870123 AAATGCAGCTGTGTAAATTGGA 57.130 36.364 16.64 0.00 0.00 3.53
2148 2780 5.973899 TGCAGCTGTGTAAATTGGAATTA 57.026 34.783 16.64 0.00 0.00 1.40
2154 2786 5.231991 GCTGTGTAAATTGGAATTATTGCCG 59.768 40.000 0.00 0.00 0.00 5.69
2155 2787 5.655488 TGTGTAAATTGGAATTATTGCCGG 58.345 37.500 0.00 0.00 0.00 6.13
2156 2788 5.047188 GTGTAAATTGGAATTATTGCCGGG 58.953 41.667 2.18 0.00 0.00 5.73
2212 2865 3.744942 CCCTGACGCTATCTCATCATTTG 59.255 47.826 0.00 0.00 0.00 2.32
2215 2868 5.985530 CCTGACGCTATCTCATCATTTGTAA 59.014 40.000 0.00 0.00 0.00 2.41
2270 2929 7.751768 AAATTACCTTCTAGCTATTGATGGC 57.248 36.000 12.38 0.00 32.68 4.40
2526 3186 5.367945 GTATCCCAACTCCAGATACCAAA 57.632 43.478 0.00 0.00 37.47 3.28
2561 3221 2.829120 TGATCCTCACATCACGTTACCA 59.171 45.455 0.00 0.00 0.00 3.25
2602 3262 6.330004 TGAATGCACAAAGAAGCTTGATTA 57.670 33.333 2.10 0.00 0.00 1.75
2655 3315 2.620585 GGAACTGTTCTTGAGCAAGCTT 59.379 45.455 19.05 0.00 38.28 3.74
2701 3361 3.054728 TGAATCGCTTGGTTCCCAGAATA 60.055 43.478 0.00 0.00 33.81 1.75
2704 3364 2.304761 TCGCTTGGTTCCCAGAATACTT 59.695 45.455 0.00 0.00 33.81 2.24
2715 3375 5.710646 TCCCAGAATACTTCTAGAGAGCAT 58.289 41.667 0.00 0.00 38.11 3.79
2722 3382 4.870123 ACTTCTAGAGAGCATGCTATGG 57.130 45.455 21.58 11.53 0.00 2.74
2723 3383 3.006752 ACTTCTAGAGAGCATGCTATGGC 59.993 47.826 21.58 7.89 39.26 4.40
2745 3405 0.543410 TAGCCCGAAGTTGTGGAGGA 60.543 55.000 0.00 0.00 0.00 3.71
2799 3459 2.759795 GCAGGCTTGGAAGAGGGT 59.240 61.111 0.00 0.00 0.00 4.34
2828 3488 2.203470 TCAGCTGTGGATGCAATTGA 57.797 45.000 14.67 0.00 0.00 2.57
2832 3492 3.630769 CAGCTGTGGATGCAATTGATACT 59.369 43.478 10.34 0.00 0.00 2.12
2841 3501 8.671921 GTGGATGCAATTGATACTAATATGGAG 58.328 37.037 10.34 0.00 0.00 3.86
2902 3562 0.038251 CAGCTACGACAGGCTCACAA 60.038 55.000 0.00 0.00 36.59 3.33
2923 3583 3.686016 ACCACTCAACAACAGTGTTTCT 58.314 40.909 5.57 0.00 46.01 2.52
3007 3667 5.646360 TGGTTAGCTGAAGGTTTGCTATTAC 59.354 40.000 0.00 0.00 38.80 1.89
3013 3673 6.261826 AGCTGAAGGTTTGCTATTACATGATC 59.738 38.462 0.00 0.00 35.05 2.92
3018 3678 5.755375 AGGTTTGCTATTACATGATCGTGAG 59.245 40.000 21.75 9.22 0.00 3.51
3045 3705 5.164954 GGTTATCTGATATTCCGCAGTCTC 58.835 45.833 0.00 0.00 33.90 3.36
3111 3771 7.816995 TCAAAGGTAAAAATGCACCATGTAATC 59.183 33.333 0.00 0.00 37.28 1.75
3282 3942 5.083533 TCTCACCAAAGTGCAAAAATGTT 57.916 34.783 0.00 0.00 44.16 2.71
3622 4282 3.253188 CCGTGATGTTGACAACCTGAATT 59.747 43.478 15.59 0.00 0.00 2.17
3948 4611 8.477256 CCAATGTCCCATAATTTTCAGTACATT 58.523 33.333 0.00 0.00 35.92 2.71
3990 4653 1.202989 TGCCCCAAGCTGTTGAACATA 60.203 47.619 0.00 0.00 44.23 2.29
4003 4666 3.260475 TGAACATAACATGGGTCCGAG 57.740 47.619 0.00 0.00 33.60 4.63
4138 4810 7.441458 CAGATGAACAAGAAGATCATGCTATGA 59.559 37.037 0.00 2.05 39.54 2.15
4290 4962 2.305009 GAGGATTGCCCAAATCTGAGG 58.695 52.381 0.00 0.00 43.71 3.86
4382 5054 4.522789 GGAGAAACTGCAGTGGGAAAATAA 59.477 41.667 22.49 0.00 0.00 1.40
4402 5074 1.267574 GGAGGAGGTGGCATGTCTGA 61.268 60.000 0.00 0.00 0.00 3.27
4722 5430 9.838339 CAGTTACATAGAATCATTACCCTTCTT 57.162 33.333 0.00 0.00 31.89 2.52
4842 5551 2.548057 TCAGGCGAAATGTTTCACTGAC 59.452 45.455 18.20 2.61 41.62 3.51
5080 6555 4.010349 ACAACAGGCCTGCTATTTCTTAC 58.990 43.478 33.06 0.00 0.00 2.34
5082 6557 4.143986 ACAGGCCTGCTATTTCTTACTC 57.856 45.455 33.06 0.00 0.00 2.59
5083 6558 3.118223 ACAGGCCTGCTATTTCTTACTCC 60.118 47.826 33.06 0.00 0.00 3.85
5084 6559 2.439880 AGGCCTGCTATTTCTTACTCCC 59.560 50.000 3.11 0.00 0.00 4.30
5086 6561 3.495276 GGCCTGCTATTTCTTACTCCCTC 60.495 52.174 0.00 0.00 0.00 4.30
5087 6562 3.495276 GCCTGCTATTTCTTACTCCCTCC 60.495 52.174 0.00 0.00 0.00 4.30
5091 6566 4.142004 TGCTATTTCTTACTCCCTCCGTTC 60.142 45.833 0.00 0.00 0.00 3.95
5092 6567 3.908643 ATTTCTTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
5093 6568 1.180029 TTCTTACTCCCTCCGTTCCG 58.820 55.000 0.00 0.00 0.00 4.30
5094 6569 0.329261 TCTTACTCCCTCCGTTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
5095 6570 1.180029 CTTACTCCCTCCGTTCCGAA 58.820 55.000 0.00 0.00 0.00 4.30
5096 6571 1.755380 CTTACTCCCTCCGTTCCGAAT 59.245 52.381 0.00 0.00 0.00 3.34
5098 6573 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
5099 6574 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
5101 6576 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
5102 6577 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5103 6578 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5104 6579 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5106 6581 3.319755 TCCGTTCCGAATTACTTGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
5107 6582 2.091588 CCGTTCCGAATTACTTGTCACG 59.908 50.000 0.00 0.00 0.00 4.35
5109 6584 3.059044 CGTTCCGAATTACTTGTCACGAG 59.941 47.826 0.00 0.00 0.00 4.18
5113 6588 5.337554 TCCGAATTACTTGTCACGAGTATG 58.662 41.667 5.69 0.00 30.30 2.39
5114 6589 4.503007 CCGAATTACTTGTCACGAGTATGG 59.497 45.833 5.69 2.95 30.30 2.74
5115 6590 5.337554 CGAATTACTTGTCACGAGTATGGA 58.662 41.667 5.69 0.00 30.30 3.41
5117 6592 6.074835 CGAATTACTTGTCACGAGTATGGATG 60.075 42.308 5.69 0.00 30.30 3.51
5118 6593 5.654603 TTACTTGTCACGAGTATGGATGT 57.345 39.130 5.69 0.00 30.30 3.06
5120 6595 5.854010 ACTTGTCACGAGTATGGATGTAT 57.146 39.130 0.00 0.00 0.00 2.29
5121 6596 5.833082 ACTTGTCACGAGTATGGATGTATC 58.167 41.667 0.00 0.00 0.00 2.24
5122 6597 5.594725 ACTTGTCACGAGTATGGATGTATCT 59.405 40.000 0.00 0.00 0.00 1.98
5123 6598 6.771267 ACTTGTCACGAGTATGGATGTATCTA 59.229 38.462 0.00 0.00 0.00 1.98
5125 6600 6.531021 TGTCACGAGTATGGATGTATCTAGA 58.469 40.000 0.00 0.00 0.00 2.43
5126 6601 7.168905 TGTCACGAGTATGGATGTATCTAGAT 58.831 38.462 10.73 10.73 0.00 1.98
5127 6602 7.119846 TGTCACGAGTATGGATGTATCTAGATG 59.880 40.741 15.79 0.00 0.00 2.90
5128 6603 7.119992 GTCACGAGTATGGATGTATCTAGATGT 59.880 40.741 15.79 1.25 0.00 3.06
5129 6604 8.319146 TCACGAGTATGGATGTATCTAGATGTA 58.681 37.037 15.79 4.44 0.00 2.29
5131 6606 9.688091 ACGAGTATGGATGTATCTAGATGTATT 57.312 33.333 15.79 0.00 0.00 1.89
5159 6634 8.693120 AGTTCTAGATACATCCATTTCTACGA 57.307 34.615 0.00 0.00 0.00 3.43
5160 6635 8.569641 AGTTCTAGATACATCCATTTCTACGAC 58.430 37.037 0.00 0.00 0.00 4.34
5161 6636 7.130303 TCTAGATACATCCATTTCTACGACG 57.870 40.000 0.00 0.00 0.00 5.12
5162 6637 6.932960 TCTAGATACATCCATTTCTACGACGA 59.067 38.462 0.00 0.00 0.00 4.20
5163 6638 6.003234 AGATACATCCATTTCTACGACGAG 57.997 41.667 0.00 0.00 0.00 4.18
5164 6639 5.531659 AGATACATCCATTTCTACGACGAGT 59.468 40.000 0.00 0.00 0.00 4.18
5165 6640 6.709397 AGATACATCCATTTCTACGACGAGTA 59.291 38.462 0.00 0.00 0.00 2.59
5166 6641 5.571784 ACATCCATTTCTACGACGAGTAA 57.428 39.130 0.00 0.00 34.45 2.24
5167 6642 6.145338 ACATCCATTTCTACGACGAGTAAT 57.855 37.500 0.00 0.00 34.45 1.89
5168 6643 6.570692 ACATCCATTTCTACGACGAGTAATT 58.429 36.000 0.00 0.00 34.45 1.40
5169 6644 7.039882 ACATCCATTTCTACGACGAGTAATTT 58.960 34.615 0.00 0.00 34.45 1.82
5170 6645 6.880822 TCCATTTCTACGACGAGTAATTTG 57.119 37.500 0.00 0.00 34.45 2.32
5171 6646 5.808540 TCCATTTCTACGACGAGTAATTTGG 59.191 40.000 0.00 0.59 34.45 3.28
5172 6647 5.808540 CCATTTCTACGACGAGTAATTTGGA 59.191 40.000 0.00 0.00 34.45 3.53
5173 6648 6.311935 CCATTTCTACGACGAGTAATTTGGAA 59.688 38.462 0.00 0.00 34.45 3.53
5174 6649 6.695292 TTTCTACGACGAGTAATTTGGAAC 57.305 37.500 0.00 0.00 34.45 3.62
5175 6650 4.406069 TCTACGACGAGTAATTTGGAACG 58.594 43.478 0.00 0.00 34.45 3.95
5176 6651 2.331194 ACGACGAGTAATTTGGAACGG 58.669 47.619 0.00 0.00 0.00 4.44
5177 6652 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
5178 6653 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
5179 6654 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5180 6655 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5181 6656 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
5182 6657 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
5183 6658 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
5184 6659 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
5185 6660 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
5186 6661 4.586306 AATTTGGAACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
5187 6662 4.586306 ATTTGGAACGGAGGGAGTATTT 57.414 40.909 0.00 0.00 0.00 1.40
5261 6736 4.718961 AGAACAAGGTATTGCTGTTGTCT 58.281 39.130 0.00 0.00 40.27 3.41
5295 6770 5.788450 TCCTTCTCTGCTTTAAAGTCAGAG 58.212 41.667 34.76 34.76 46.61 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.324091 GGGAAGTAGACCAGACGGGA 60.324 60.000 0.00 0.00 41.15 5.14
1 2 1.328430 GGGGAAGTAGACCAGACGGG 61.328 65.000 0.00 0.00 44.81 5.28
4 5 1.832366 GAAGGGGGAAGTAGACCAGAC 59.168 57.143 0.00 0.00 0.00 3.51
7 8 0.253020 GGGAAGGGGGAAGTAGACCA 60.253 60.000 0.00 0.00 0.00 4.02
10 11 2.663675 AGTTAGGGAAGGGGGAAGTAGA 59.336 50.000 0.00 0.00 0.00 2.59
12 13 2.293385 GGAGTTAGGGAAGGGGGAAGTA 60.293 54.545 0.00 0.00 0.00 2.24
13 14 1.557426 GGAGTTAGGGAAGGGGGAAGT 60.557 57.143 0.00 0.00 0.00 3.01
14 15 1.214217 GGAGTTAGGGAAGGGGGAAG 58.786 60.000 0.00 0.00 0.00 3.46
15 16 0.253488 GGGAGTTAGGGAAGGGGGAA 60.253 60.000 0.00 0.00 0.00 3.97
16 17 1.166973 AGGGAGTTAGGGAAGGGGGA 61.167 60.000 0.00 0.00 0.00 4.81
17 18 0.694783 GAGGGAGTTAGGGAAGGGGG 60.695 65.000 0.00 0.00 0.00 5.40
18 19 0.694783 GGAGGGAGTTAGGGAAGGGG 60.695 65.000 0.00 0.00 0.00 4.79
19 20 0.343726 AGGAGGGAGTTAGGGAAGGG 59.656 60.000 0.00 0.00 0.00 3.95
20 21 1.008449 TCAGGAGGGAGTTAGGGAAGG 59.992 57.143 0.00 0.00 0.00 3.46
21 22 2.112190 GTCAGGAGGGAGTTAGGGAAG 58.888 57.143 0.00 0.00 0.00 3.46
22 23 1.722851 AGTCAGGAGGGAGTTAGGGAA 59.277 52.381 0.00 0.00 0.00 3.97
23 24 1.288335 GAGTCAGGAGGGAGTTAGGGA 59.712 57.143 0.00 0.00 0.00 4.20
24 25 1.689892 GGAGTCAGGAGGGAGTTAGGG 60.690 61.905 0.00 0.00 0.00 3.53
25 26 1.689892 GGGAGTCAGGAGGGAGTTAGG 60.690 61.905 0.00 0.00 0.00 2.69
26 27 1.783071 GGGAGTCAGGAGGGAGTTAG 58.217 60.000 0.00 0.00 0.00 2.34
27 28 0.033405 CGGGAGTCAGGAGGGAGTTA 60.033 60.000 0.00 0.00 0.00 2.24
28 29 1.305381 CGGGAGTCAGGAGGGAGTT 60.305 63.158 0.00 0.00 0.00 3.01
29 30 1.585651 ATCGGGAGTCAGGAGGGAGT 61.586 60.000 0.00 0.00 0.00 3.85
30 31 1.112315 CATCGGGAGTCAGGAGGGAG 61.112 65.000 0.00 0.00 0.00 4.30
31 32 1.075970 CATCGGGAGTCAGGAGGGA 60.076 63.158 0.00 0.00 0.00 4.20
32 33 2.801631 GCATCGGGAGTCAGGAGGG 61.802 68.421 0.00 0.00 0.00 4.30
33 34 1.333636 AAGCATCGGGAGTCAGGAGG 61.334 60.000 0.00 0.00 0.00 4.30
34 35 0.103937 GAAGCATCGGGAGTCAGGAG 59.896 60.000 0.00 0.00 0.00 3.69
35 36 0.324738 AGAAGCATCGGGAGTCAGGA 60.325 55.000 0.00 0.00 0.00 3.86
36 37 0.179089 CAGAAGCATCGGGAGTCAGG 60.179 60.000 0.00 0.00 0.00 3.86
37 38 0.179089 CCAGAAGCATCGGGAGTCAG 60.179 60.000 1.50 0.00 42.92 3.51
38 39 0.904865 ACCAGAAGCATCGGGAGTCA 60.905 55.000 15.18 0.00 42.92 3.41
39 40 1.067821 CTACCAGAAGCATCGGGAGTC 59.932 57.143 15.18 0.00 42.92 3.36
40 41 1.115467 CTACCAGAAGCATCGGGAGT 58.885 55.000 15.18 0.00 42.92 3.85
41 42 1.067821 GTCTACCAGAAGCATCGGGAG 59.932 57.143 15.18 9.97 42.92 4.30
42 43 1.112113 GTCTACCAGAAGCATCGGGA 58.888 55.000 15.18 0.00 42.92 5.14
43 44 1.067821 GAGTCTACCAGAAGCATCGGG 59.932 57.143 6.57 6.57 45.42 5.14
44 45 1.268794 CGAGTCTACCAGAAGCATCGG 60.269 57.143 0.00 0.00 0.00 4.18
45 46 1.862008 GCGAGTCTACCAGAAGCATCG 60.862 57.143 0.00 0.00 0.00 3.84
46 47 1.537135 GGCGAGTCTACCAGAAGCATC 60.537 57.143 0.00 0.00 0.00 3.91
47 48 0.461961 GGCGAGTCTACCAGAAGCAT 59.538 55.000 0.00 0.00 0.00 3.79
48 49 0.898326 TGGCGAGTCTACCAGAAGCA 60.898 55.000 0.00 0.00 0.00 3.91
49 50 0.461961 ATGGCGAGTCTACCAGAAGC 59.538 55.000 7.69 0.00 39.88 3.86
50 51 1.804372 GCATGGCGAGTCTACCAGAAG 60.804 57.143 7.69 2.56 39.88 2.85
51 52 0.175760 GCATGGCGAGTCTACCAGAA 59.824 55.000 7.69 0.00 39.88 3.02
52 53 0.970427 TGCATGGCGAGTCTACCAGA 60.970 55.000 7.69 0.00 39.88 3.86
53 54 0.529337 CTGCATGGCGAGTCTACCAG 60.529 60.000 7.69 2.45 39.88 4.00
54 55 0.970427 TCTGCATGGCGAGTCTACCA 60.970 55.000 4.40 4.40 41.06 3.25
55 56 0.390860 ATCTGCATGGCGAGTCTACC 59.609 55.000 0.00 0.00 0.00 3.18
56 57 1.495878 CATCTGCATGGCGAGTCTAC 58.504 55.000 0.00 0.00 0.00 2.59
57 58 0.390492 CCATCTGCATGGCGAGTCTA 59.610 55.000 0.00 0.00 43.55 2.59
58 59 1.145598 CCATCTGCATGGCGAGTCT 59.854 57.895 0.00 0.00 43.55 3.24
59 60 3.728474 CCATCTGCATGGCGAGTC 58.272 61.111 0.00 0.00 43.55 3.36
66 67 3.305403 GCCATTGAAGATCCATCTGCATG 60.305 47.826 0.00 0.00 41.94 4.06
67 68 2.891580 GCCATTGAAGATCCATCTGCAT 59.108 45.455 0.00 0.00 41.94 3.96
68 69 2.304092 GCCATTGAAGATCCATCTGCA 58.696 47.619 0.00 0.00 40.69 4.41
69 70 1.266175 CGCCATTGAAGATCCATCTGC 59.734 52.381 0.00 0.00 37.19 4.26
70 71 1.878088 CCGCCATTGAAGATCCATCTG 59.122 52.381 0.00 0.00 37.19 2.90
71 72 1.770658 TCCGCCATTGAAGATCCATCT 59.229 47.619 0.00 0.00 39.22 2.90
72 73 2.260844 TCCGCCATTGAAGATCCATC 57.739 50.000 0.00 0.00 0.00 3.51
73 74 2.301346 GTTCCGCCATTGAAGATCCAT 58.699 47.619 0.00 0.00 0.00 3.41
74 75 1.004161 TGTTCCGCCATTGAAGATCCA 59.996 47.619 0.00 0.00 0.00 3.41
75 76 1.750193 TGTTCCGCCATTGAAGATCC 58.250 50.000 0.00 0.00 0.00 3.36
76 77 2.098117 CCTTGTTCCGCCATTGAAGATC 59.902 50.000 0.00 0.00 0.00 2.75
77 78 2.094675 CCTTGTTCCGCCATTGAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
78 79 1.202879 ACCTTGTTCCGCCATTGAAGA 60.203 47.619 0.00 0.00 0.00 2.87
79 80 1.247567 ACCTTGTTCCGCCATTGAAG 58.752 50.000 0.00 0.00 0.00 3.02
80 81 1.698506 AACCTTGTTCCGCCATTGAA 58.301 45.000 0.00 0.00 0.00 2.69
81 82 2.156098 GTAACCTTGTTCCGCCATTGA 58.844 47.619 0.00 0.00 0.00 2.57
82 83 1.135803 CGTAACCTTGTTCCGCCATTG 60.136 52.381 0.00 0.00 0.00 2.82
83 84 1.161843 CGTAACCTTGTTCCGCCATT 58.838 50.000 0.00 0.00 0.00 3.16
84 85 0.322322 TCGTAACCTTGTTCCGCCAT 59.678 50.000 0.00 0.00 0.00 4.40
85 86 0.322322 ATCGTAACCTTGTTCCGCCA 59.678 50.000 0.00 0.00 0.00 5.69
86 87 1.004595 GATCGTAACCTTGTTCCGCC 58.995 55.000 0.00 0.00 0.00 6.13
87 88 2.005971 AGATCGTAACCTTGTTCCGC 57.994 50.000 0.00 0.00 0.00 5.54
88 89 2.671396 CCAAGATCGTAACCTTGTTCCG 59.329 50.000 0.00 0.00 38.39 4.30
89 90 3.671716 ACCAAGATCGTAACCTTGTTCC 58.328 45.455 0.00 0.00 38.39 3.62
90 91 4.151867 GTGACCAAGATCGTAACCTTGTTC 59.848 45.833 0.00 0.00 38.39 3.18
91 92 4.062991 GTGACCAAGATCGTAACCTTGTT 58.937 43.478 0.00 0.00 38.39 2.83
92 93 3.556423 GGTGACCAAGATCGTAACCTTGT 60.556 47.826 0.00 0.00 38.39 3.16
93 94 3.000727 GGTGACCAAGATCGTAACCTTG 58.999 50.000 0.00 0.00 39.43 3.61
94 95 2.353406 CGGTGACCAAGATCGTAACCTT 60.353 50.000 1.11 0.00 33.06 3.50
95 96 1.203994 CGGTGACCAAGATCGTAACCT 59.796 52.381 1.11 0.00 33.06 3.50
96 97 1.636988 CGGTGACCAAGATCGTAACC 58.363 55.000 1.11 0.00 32.00 2.85
97 98 1.203052 TCCGGTGACCAAGATCGTAAC 59.797 52.381 1.11 0.00 0.00 2.50
98 99 1.548081 TCCGGTGACCAAGATCGTAA 58.452 50.000 1.11 0.00 0.00 3.18
99 100 1.771565 ATCCGGTGACCAAGATCGTA 58.228 50.000 1.11 0.00 0.00 3.43
100 101 1.681793 CTATCCGGTGACCAAGATCGT 59.318 52.381 7.36 0.00 0.00 3.73
101 102 1.954382 TCTATCCGGTGACCAAGATCG 59.046 52.381 7.36 2.73 0.00 3.69
102 103 3.492829 GGTTCTATCCGGTGACCAAGATC 60.493 52.174 7.36 1.36 0.00 2.75
103 104 2.434702 GGTTCTATCCGGTGACCAAGAT 59.565 50.000 1.11 5.89 0.00 2.40
104 105 1.829222 GGTTCTATCCGGTGACCAAGA 59.171 52.381 1.11 0.00 0.00 3.02
105 106 1.134491 GGGTTCTATCCGGTGACCAAG 60.134 57.143 1.11 0.00 0.00 3.61
106 107 0.906775 GGGTTCTATCCGGTGACCAA 59.093 55.000 1.11 0.00 0.00 3.67
107 108 1.324740 CGGGTTCTATCCGGTGACCA 61.325 60.000 1.11 0.00 43.45 4.02
108 109 1.440476 CGGGTTCTATCCGGTGACC 59.560 63.158 0.00 3.66 43.45 4.02
109 110 1.227176 GCGGGTTCTATCCGGTGAC 60.227 63.158 0.00 0.00 46.86 3.67
110 111 2.428925 GGCGGGTTCTATCCGGTGA 61.429 63.158 0.00 0.00 46.86 4.02
111 112 2.108362 GGCGGGTTCTATCCGGTG 59.892 66.667 0.00 0.00 46.86 4.94
112 113 3.534056 CGGCGGGTTCTATCCGGT 61.534 66.667 0.00 0.00 46.86 5.28
113 114 4.963428 GCGGCGGGTTCTATCCGG 62.963 72.222 9.78 0.00 46.86 5.14
115 116 3.516866 GAGGCGGCGGGTTCTATCC 62.517 68.421 9.78 0.00 0.00 2.59
116 117 2.029221 GAGGCGGCGGGTTCTATC 59.971 66.667 9.78 0.00 0.00 2.08
117 118 3.912907 CGAGGCGGCGGGTTCTAT 61.913 66.667 9.78 0.00 0.00 1.98
120 121 2.911332 TTAATCGAGGCGGCGGGTTC 62.911 60.000 9.78 0.00 0.00 3.62
121 122 2.524951 TTTAATCGAGGCGGCGGGTT 62.525 55.000 9.78 5.00 0.00 4.11
122 123 3.021473 TTTAATCGAGGCGGCGGGT 62.021 57.895 9.78 0.00 0.00 5.28
123 124 2.202960 TTTAATCGAGGCGGCGGG 60.203 61.111 9.78 0.00 0.00 6.13
124 125 1.157870 ATGTTTAATCGAGGCGGCGG 61.158 55.000 9.78 0.00 0.00 6.13
125 126 0.042188 CATGTTTAATCGAGGCGGCG 60.042 55.000 0.51 0.51 0.00 6.46
126 127 0.307760 CCATGTTTAATCGAGGCGGC 59.692 55.000 0.00 0.00 0.00 6.53
127 128 1.597663 GTCCATGTTTAATCGAGGCGG 59.402 52.381 0.00 0.00 0.00 6.13
128 129 2.540101 GAGTCCATGTTTAATCGAGGCG 59.460 50.000 0.00 0.00 0.00 5.52
129 130 3.557595 CAGAGTCCATGTTTAATCGAGGC 59.442 47.826 0.00 0.00 0.00 4.70
130 131 5.011090 TCAGAGTCCATGTTTAATCGAGG 57.989 43.478 0.00 0.00 0.00 4.63
131 132 4.505922 GCTCAGAGTCCATGTTTAATCGAG 59.494 45.833 0.00 0.00 0.00 4.04
132 133 4.433615 GCTCAGAGTCCATGTTTAATCGA 58.566 43.478 0.00 0.00 0.00 3.59
133 134 3.243877 CGCTCAGAGTCCATGTTTAATCG 59.756 47.826 0.00 0.00 0.00 3.34
134 135 4.184629 ACGCTCAGAGTCCATGTTTAATC 58.815 43.478 0.00 0.00 0.00 1.75
135 136 4.184629 GACGCTCAGAGTCCATGTTTAAT 58.815 43.478 0.00 0.00 32.78 1.40
136 137 3.585862 GACGCTCAGAGTCCATGTTTAA 58.414 45.455 0.00 0.00 32.78 1.52
137 138 2.415491 CGACGCTCAGAGTCCATGTTTA 60.415 50.000 2.58 0.00 35.33 2.01
138 139 1.670087 CGACGCTCAGAGTCCATGTTT 60.670 52.381 2.58 0.00 35.33 2.83
139 140 0.109086 CGACGCTCAGAGTCCATGTT 60.109 55.000 2.58 0.00 35.33 2.71
140 141 1.508545 CGACGCTCAGAGTCCATGT 59.491 57.895 2.58 0.00 35.33 3.21
141 142 1.875813 GCGACGCTCAGAGTCCATG 60.876 63.158 13.73 0.00 35.33 3.66
142 143 2.492090 GCGACGCTCAGAGTCCAT 59.508 61.111 13.73 0.00 35.33 3.41
143 144 3.749064 GGCGACGCTCAGAGTCCA 61.749 66.667 20.77 0.00 35.33 4.02
156 157 4.752879 CTTTTCCTCCGGCGGCGA 62.753 66.667 34.49 16.46 0.00 5.54
158 159 3.431725 CACTTTTCCTCCGGCGGC 61.432 66.667 23.83 0.00 0.00 6.53
159 160 2.741486 TTCCACTTTTCCTCCGGCGG 62.741 60.000 22.51 22.51 0.00 6.13
160 161 1.302192 TTCCACTTTTCCTCCGGCG 60.302 57.895 0.00 0.00 0.00 6.46
161 162 1.241990 GGTTCCACTTTTCCTCCGGC 61.242 60.000 0.00 0.00 0.00 6.13
162 163 0.608308 GGGTTCCACTTTTCCTCCGG 60.608 60.000 0.00 0.00 0.00 5.14
163 164 0.400594 AGGGTTCCACTTTTCCTCCG 59.599 55.000 0.00 0.00 0.00 4.63
164 165 2.910977 TCTAGGGTTCCACTTTTCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
165 166 4.680975 CGATCTAGGGTTCCACTTTTCCTC 60.681 50.000 0.00 0.00 0.00 3.71
166 167 3.197983 CGATCTAGGGTTCCACTTTTCCT 59.802 47.826 0.00 0.00 0.00 3.36
167 168 3.532542 CGATCTAGGGTTCCACTTTTCC 58.467 50.000 0.00 0.00 0.00 3.13
168 169 2.937149 GCGATCTAGGGTTCCACTTTTC 59.063 50.000 0.00 0.00 0.00 2.29
169 170 2.355818 GGCGATCTAGGGTTCCACTTTT 60.356 50.000 0.00 0.00 0.00 2.27
170 171 1.209747 GGCGATCTAGGGTTCCACTTT 59.790 52.381 0.00 0.00 0.00 2.66
171 172 0.831307 GGCGATCTAGGGTTCCACTT 59.169 55.000 0.00 0.00 0.00 3.16
172 173 0.032017 AGGCGATCTAGGGTTCCACT 60.032 55.000 0.00 0.00 0.00 4.00
173 174 1.614413 CTAGGCGATCTAGGGTTCCAC 59.386 57.143 5.62 0.00 41.30 4.02
174 175 1.996798 CTAGGCGATCTAGGGTTCCA 58.003 55.000 5.62 0.00 41.30 3.53
181 182 3.494573 GGTTTTTCCCCTAGGCGATCTAG 60.495 52.174 2.05 6.34 43.89 2.43
182 183 2.436911 GGTTTTTCCCCTAGGCGATCTA 59.563 50.000 2.05 0.00 0.00 1.98
183 184 1.212195 GGTTTTTCCCCTAGGCGATCT 59.788 52.381 2.05 0.00 0.00 2.75
184 185 1.676746 GGTTTTTCCCCTAGGCGATC 58.323 55.000 2.05 0.00 0.00 3.69
185 186 0.107361 CGGTTTTTCCCCTAGGCGAT 60.107 55.000 2.05 0.00 0.00 4.58
186 187 1.297364 CGGTTTTTCCCCTAGGCGA 59.703 57.895 2.05 0.00 0.00 5.54
187 188 2.404186 GCGGTTTTTCCCCTAGGCG 61.404 63.158 2.05 0.00 0.00 5.52
188 189 0.896479 TTGCGGTTTTTCCCCTAGGC 60.896 55.000 2.05 0.00 0.00 3.93
189 190 1.623163 TTTGCGGTTTTTCCCCTAGG 58.377 50.000 0.06 0.06 0.00 3.02
190 191 3.737032 TTTTTGCGGTTTTTCCCCTAG 57.263 42.857 0.00 0.00 0.00 3.02
207 208 1.342174 TCGTGAGTCCGGCTAGTTTTT 59.658 47.619 0.00 0.00 0.00 1.94
208 209 0.963962 TCGTGAGTCCGGCTAGTTTT 59.036 50.000 0.00 0.00 0.00 2.43
209 210 0.526662 CTCGTGAGTCCGGCTAGTTT 59.473 55.000 0.00 0.00 0.00 2.66
210 211 1.313812 CCTCGTGAGTCCGGCTAGTT 61.314 60.000 0.00 0.00 0.00 2.24
211 212 1.749638 CCTCGTGAGTCCGGCTAGT 60.750 63.158 0.00 0.00 0.00 2.57
212 213 1.030488 TTCCTCGTGAGTCCGGCTAG 61.030 60.000 0.00 0.00 0.00 3.42
213 214 0.609957 TTTCCTCGTGAGTCCGGCTA 60.610 55.000 0.00 0.00 0.00 3.93
214 215 1.878656 CTTTCCTCGTGAGTCCGGCT 61.879 60.000 0.00 0.00 0.00 5.52
215 216 1.446272 CTTTCCTCGTGAGTCCGGC 60.446 63.158 0.00 0.00 0.00 6.13
216 217 0.317479 AACTTTCCTCGTGAGTCCGG 59.683 55.000 0.00 0.00 0.00 5.14
217 218 1.269621 ACAACTTTCCTCGTGAGTCCG 60.270 52.381 0.00 0.00 0.00 4.79
218 219 2.135933 CACAACTTTCCTCGTGAGTCC 58.864 52.381 0.00 0.00 0.00 3.85
219 220 2.135933 CCACAACTTTCCTCGTGAGTC 58.864 52.381 0.00 0.00 0.00 3.36
220 221 1.202651 CCCACAACTTTCCTCGTGAGT 60.203 52.381 0.00 0.00 0.00 3.41
224 225 0.535102 CAGCCCACAACTTTCCTCGT 60.535 55.000 0.00 0.00 0.00 4.18
279 280 1.535687 ACCGGTAGTTGGGCTGACT 60.536 57.895 4.49 0.00 0.00 3.41
282 283 2.125673 CGACCGGTAGTTGGGCTG 60.126 66.667 7.34 0.00 29.70 4.85
290 291 0.739813 CTTTTCAGCCCGACCGGTAG 60.740 60.000 7.34 7.65 0.00 3.18
291 292 1.186917 TCTTTTCAGCCCGACCGGTA 61.187 55.000 7.34 0.00 0.00 4.02
292 293 2.032071 CTTTTCAGCCCGACCGGT 59.968 61.111 6.92 6.92 0.00 5.28
294 295 0.948678 TTTTCTTTTCAGCCCGACCG 59.051 50.000 0.00 0.00 0.00 4.79
295 296 3.119602 GGTATTTTCTTTTCAGCCCGACC 60.120 47.826 0.00 0.00 0.00 4.79
296 297 3.425758 CGGTATTTTCTTTTCAGCCCGAC 60.426 47.826 0.00 0.00 35.04 4.79
297 298 2.745281 CGGTATTTTCTTTTCAGCCCGA 59.255 45.455 0.00 0.00 35.04 5.14
298 299 2.731027 GCGGTATTTTCTTTTCAGCCCG 60.731 50.000 0.00 0.00 36.11 6.13
300 301 3.501950 CTGCGGTATTTTCTTTTCAGCC 58.498 45.455 0.00 0.00 0.00 4.85
301 302 2.917343 GCTGCGGTATTTTCTTTTCAGC 59.083 45.455 0.00 0.00 38.81 4.26
302 303 3.501950 GGCTGCGGTATTTTCTTTTCAG 58.498 45.455 0.00 0.00 0.00 3.02
303 304 2.095466 CGGCTGCGGTATTTTCTTTTCA 60.095 45.455 0.00 0.00 0.00 2.69
305 306 1.883926 ACGGCTGCGGTATTTTCTTTT 59.116 42.857 11.37 0.00 0.00 2.27
306 307 1.530323 ACGGCTGCGGTATTTTCTTT 58.470 45.000 11.37 0.00 0.00 2.52
309 325 0.179174 CCAACGGCTGCGGTATTTTC 60.179 55.000 13.40 0.00 0.00 2.29
313 329 4.483243 CCCCAACGGCTGCGGTAT 62.483 66.667 13.40 1.76 0.00 2.73
317 333 2.153547 AAAATTCCCCAACGGCTGCG 62.154 55.000 0.00 0.00 0.00 5.18
320 336 2.384828 GGATAAAATTCCCCAACGGCT 58.615 47.619 0.00 0.00 0.00 5.52
330 346 3.059120 GGAACTAGCCGCGGATAAAATTC 60.059 47.826 33.48 26.93 0.00 2.17
332 348 2.490991 GGAACTAGCCGCGGATAAAAT 58.509 47.619 33.48 15.94 0.00 1.82
386 410 1.066358 GGTTAGAAACTCGGAGGTGGG 60.066 57.143 10.23 0.00 0.00 4.61
397 421 1.458445 GTCGGAGTTGCGGTTAGAAAC 59.542 52.381 0.00 0.00 38.73 2.78
419 443 1.132453 GGTTTTTATCTGGTCGCTGGC 59.868 52.381 0.00 0.00 0.00 4.85
425 449 4.082733 GGTGAAGCTGGTTTTTATCTGGTC 60.083 45.833 0.00 0.00 0.00 4.02
714 741 2.195727 TGTGGATGGCATACTCTTCCA 58.804 47.619 11.73 6.19 36.50 3.53
801 830 1.065551 CGATGGCGACTGACATGTCTA 59.934 52.381 25.55 11.80 46.49 2.59
846 875 0.735978 CAGCACGGCGAGAATGTACA 60.736 55.000 16.62 0.00 0.00 2.90
866 895 3.961414 TCCCCTGGTCAAACCGGC 61.961 66.667 0.00 0.00 43.40 6.13
900 929 3.902881 AAAGAACAACCCAATGCAACA 57.097 38.095 0.00 0.00 0.00 3.33
967 996 2.645394 TTTCAAGTGGCAGCCAGGCT 62.645 55.000 16.83 8.70 44.55 4.58
1173 1202 4.057428 GTGACTCGCGCCCTCACT 62.057 66.667 17.98 0.00 33.00 3.41
1249 1278 3.739519 GCATCCAGTTGTAGCTCTTCGAT 60.740 47.826 0.00 0.00 0.00 3.59
1347 1376 1.493950 GAACATGCCTGCCGATCGAG 61.494 60.000 18.66 6.78 0.00 4.04
1361 1390 4.344679 CCTCATCTAGAGCCTCAAGAACAT 59.655 45.833 0.00 0.00 43.31 2.71
1536 1565 4.568804 CCTTGACCCCACACACCAATTATA 60.569 45.833 0.00 0.00 0.00 0.98
1623 1652 4.101585 TGGAGAAAGCCACATACCTGATAG 59.898 45.833 0.00 0.00 31.66 2.08
1636 2068 1.609208 TTGCAGTCTTGGAGAAAGCC 58.391 50.000 0.00 0.00 35.69 4.35
1772 2400 7.849026 CAGCACAAATTTTCTCTTCAATGTTTG 59.151 33.333 0.00 0.00 0.00 2.93
1778 2406 4.141981 TGGCAGCACAAATTTTCTCTTCAA 60.142 37.500 0.00 0.00 0.00 2.69
1779 2407 3.384146 TGGCAGCACAAATTTTCTCTTCA 59.616 39.130 0.00 0.00 0.00 3.02
1780 2408 3.981211 TGGCAGCACAAATTTTCTCTTC 58.019 40.909 0.00 0.00 0.00 2.87
1936 2567 5.479375 AGTCAAATTCTCATGCTGAATGGTT 59.521 36.000 12.35 4.41 36.86 3.67
1989 2620 9.494271 GCATTTTTCATGTCCATATCTACTAGA 57.506 33.333 0.00 0.00 0.00 2.43
1991 2622 9.797642 ATGCATTTTTCATGTCCATATCTACTA 57.202 29.630 0.00 0.00 0.00 1.82
2046 2677 6.610075 AGGATTATGTGGAAAACAGCAAAT 57.390 33.333 0.00 0.00 43.64 2.32
2134 2766 4.442192 GCCCGGCAATAATTCCAATTTACA 60.442 41.667 3.91 0.00 0.00 2.41
2144 2776 2.660572 TGTATGTGCCCGGCAATAATT 58.339 42.857 15.39 0.00 41.47 1.40
2148 2780 1.737355 GCATGTATGTGCCCGGCAAT 61.737 55.000 15.39 12.35 41.47 3.56
2154 2786 2.267174 AGAGATGCATGTATGTGCCC 57.733 50.000 2.46 0.00 44.43 5.36
2155 2787 4.644103 AAAAGAGATGCATGTATGTGCC 57.356 40.909 2.46 0.00 44.43 5.01
2244 2897 9.284968 GCCATCAATAGCTAGAAGGTAATTTTA 57.715 33.333 0.00 0.00 31.35 1.52
2269 2928 4.220693 AGCAAATTAAGGAAAATGGGGC 57.779 40.909 0.00 0.00 0.00 5.80
2270 2929 5.412286 CACAAGCAAATTAAGGAAAATGGGG 59.588 40.000 0.00 0.00 0.00 4.96
2526 3186 1.907936 AGGATCAGCTTGCTCTGACTT 59.092 47.619 6.14 0.00 44.88 3.01
2602 3262 4.331968 TCGTTACCCAAAATCTGCATCTT 58.668 39.130 0.00 0.00 0.00 2.40
2655 3315 0.826715 CTGCACTAGCCTCCTTGCTA 59.173 55.000 2.88 0.00 42.75 3.49
2701 3361 3.006752 GCCATAGCATGCTCTCTAGAAGT 59.993 47.826 26.57 0.00 39.53 3.01
2704 3364 2.601905 TGCCATAGCATGCTCTCTAGA 58.398 47.619 26.57 5.62 46.52 2.43
2722 3382 0.451783 CCACAACTTCGGGCTATTGC 59.548 55.000 0.00 0.00 38.76 3.56
2723 3383 2.009774 CTCCACAACTTCGGGCTATTG 58.990 52.381 0.00 0.00 0.00 1.90
2732 3392 0.108585 TGGCAGTCCTCCACAACTTC 59.891 55.000 0.00 0.00 0.00 3.01
2799 3459 1.699083 TCCACAGCTGATTTCCACTCA 59.301 47.619 23.35 0.00 0.00 3.41
2816 3476 8.605065 TCTCCATATTAGTATCAATTGCATCCA 58.395 33.333 0.00 0.00 0.00 3.41
2832 3492 8.889445 TCCACACCATCAATATTCTCCATATTA 58.111 33.333 0.00 0.00 36.10 0.98
2841 3501 7.719483 ACATTTCATCCACACCATCAATATTC 58.281 34.615 0.00 0.00 0.00 1.75
2902 3562 3.686016 AGAAACACTGTTGTTGAGTGGT 58.314 40.909 0.00 0.00 45.69 4.16
2923 3583 5.755409 TCTGGGAAAAGAGTGCAGTATAA 57.245 39.130 0.00 0.00 0.00 0.98
3007 3667 6.218746 TCAGATAACCATTCTCACGATCATG 58.781 40.000 0.00 0.00 0.00 3.07
3013 3673 6.309009 CGGAATATCAGATAACCATTCTCACG 59.691 42.308 13.86 3.61 0.00 4.35
3018 3678 5.934625 ACTGCGGAATATCAGATAACCATTC 59.065 40.000 0.00 6.50 34.57 2.67
3021 3681 4.588951 AGACTGCGGAATATCAGATAACCA 59.411 41.667 0.00 0.81 34.57 3.67
3029 3689 3.119280 TGAAACGAGACTGCGGAATATCA 60.119 43.478 0.00 0.00 35.12 2.15
3034 3694 0.944311 GCTGAAACGAGACTGCGGAA 60.944 55.000 0.00 0.00 35.12 4.30
3045 3705 0.936297 GCAACAAGCAGGCTGAAACG 60.936 55.000 20.86 5.38 44.79 3.60
3111 3771 0.468029 ACCAAAGACCCAGTTGCCTG 60.468 55.000 0.00 0.00 38.50 4.85
3123 3783 3.691575 TGACTTGTTGACCAACCAAAGA 58.308 40.909 15.43 0.00 40.46 2.52
3282 3942 3.070878 TGTTCTGCATCAACAGAGTGGTA 59.929 43.478 7.17 0.00 46.85 3.25
3622 4282 5.544176 ACAGTAGTTCCTTCAGAGAATCCAA 59.456 40.000 0.00 0.00 33.66 3.53
3711 4374 5.344207 AGTTTAAGCGATGTGTTGACTTC 57.656 39.130 0.00 0.00 0.00 3.01
3948 4611 5.155643 CAGTGTGAAATGATCAATTTGCGA 58.844 37.500 0.00 0.00 40.50 5.10
3990 4653 0.613777 GAAGTCCTCGGACCCATGTT 59.386 55.000 12.30 0.17 45.59 2.71
4003 4666 2.934801 GCCTCTCAAGAAGCTGAAGTCC 60.935 54.545 0.00 0.00 0.00 3.85
4138 4810 5.547465 TGTGTCATTCCGTGAAGTTTCTAT 58.453 37.500 0.00 0.00 38.90 1.98
4382 5054 1.081833 AGACATGCCACCTCCTCCT 59.918 57.895 0.00 0.00 0.00 3.69
4402 5074 6.006449 AGATTGGAATGAAGTACTTGCTGTT 58.994 36.000 14.14 2.11 0.00 3.16
5087 6562 7.378882 ATACTCGTGACAAGTAATTCGGAACG 61.379 42.308 0.00 0.00 42.37 3.95
5091 6566 4.503007 CCATACTCGTGACAAGTAATTCGG 59.497 45.833 0.00 0.00 33.19 4.30
5092 6567 5.337554 TCCATACTCGTGACAAGTAATTCG 58.662 41.667 0.00 0.00 33.19 3.34
5093 6568 6.757010 ACATCCATACTCGTGACAAGTAATTC 59.243 38.462 0.00 0.00 33.19 2.17
5094 6569 6.640518 ACATCCATACTCGTGACAAGTAATT 58.359 36.000 0.00 0.00 33.19 1.40
5095 6570 6.222038 ACATCCATACTCGTGACAAGTAAT 57.778 37.500 0.00 0.00 33.19 1.89
5096 6571 5.654603 ACATCCATACTCGTGACAAGTAA 57.345 39.130 0.00 0.00 33.19 2.24
5098 6573 5.594725 AGATACATCCATACTCGTGACAAGT 59.405 40.000 0.00 0.00 0.00 3.16
5099 6574 6.078202 AGATACATCCATACTCGTGACAAG 57.922 41.667 0.00 0.00 0.00 3.16
5101 6576 6.531021 TCTAGATACATCCATACTCGTGACA 58.469 40.000 0.00 0.00 0.00 3.58
5102 6577 7.119992 ACATCTAGATACATCCATACTCGTGAC 59.880 40.741 4.54 0.00 0.00 3.67
5103 6578 7.168905 ACATCTAGATACATCCATACTCGTGA 58.831 38.462 4.54 0.00 0.00 4.35
5104 6579 7.384439 ACATCTAGATACATCCATACTCGTG 57.616 40.000 4.54 0.00 0.00 4.35
5133 6608 9.788889 TCGTAGAAATGGATGTATCTAGAACTA 57.211 33.333 0.00 0.00 0.00 2.24
5134 6609 8.569641 GTCGTAGAAATGGATGTATCTAGAACT 58.430 37.037 0.00 0.00 39.69 3.01
5135 6610 7.534578 CGTCGTAGAAATGGATGTATCTAGAAC 59.465 40.741 0.00 0.00 39.69 3.01
5136 6611 7.443272 TCGTCGTAGAAATGGATGTATCTAGAA 59.557 37.037 0.00 0.00 39.69 2.10
5137 6612 6.932960 TCGTCGTAGAAATGGATGTATCTAGA 59.067 38.462 0.00 0.00 39.69 2.43
5138 6613 7.095144 ACTCGTCGTAGAAATGGATGTATCTAG 60.095 40.741 0.00 0.00 39.69 2.43
5139 6614 6.709397 ACTCGTCGTAGAAATGGATGTATCTA 59.291 38.462 0.00 0.00 39.69 1.98
5140 6615 5.531659 ACTCGTCGTAGAAATGGATGTATCT 59.468 40.000 0.00 0.00 39.69 1.98
5141 6616 5.759963 ACTCGTCGTAGAAATGGATGTATC 58.240 41.667 0.00 0.00 39.69 2.24
5142 6617 5.769484 ACTCGTCGTAGAAATGGATGTAT 57.231 39.130 0.00 0.00 39.69 2.29
5143 6618 6.682423 TTACTCGTCGTAGAAATGGATGTA 57.318 37.500 0.00 0.00 39.69 2.29
5144 6619 5.571784 TTACTCGTCGTAGAAATGGATGT 57.428 39.130 0.00 0.00 39.69 3.06
5145 6620 7.337718 CAAATTACTCGTCGTAGAAATGGATG 58.662 38.462 0.00 0.00 39.69 3.51
5146 6621 6.479001 CCAAATTACTCGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
5147 6622 5.808540 CCAAATTACTCGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
5148 6623 5.808540 TCCAAATTACTCGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
5149 6624 6.880822 TCCAAATTACTCGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
5150 6625 6.034256 CGTTCCAAATTACTCGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
5151 6626 5.343058 CGTTCCAAATTACTCGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
5152 6627 4.853196 CGTTCCAAATTACTCGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
5153 6628 4.406069 CGTTCCAAATTACTCGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
5154 6629 3.545078 CCGTTCCAAATTACTCGTCGTAG 59.455 47.826 0.00 0.00 0.00 3.51
5155 6630 3.190327 TCCGTTCCAAATTACTCGTCGTA 59.810 43.478 0.00 0.00 0.00 3.43
5156 6631 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
5157 6632 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
5158 6633 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
5159 6634 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
5160 6635 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
5161 6636 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
5162 6637 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
5163 6638 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
5164 6639 5.703730 AATACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
5165 6640 4.586306 AATACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
5166 6641 4.270008 CAAATACTCCCTCCGTTCCAAAT 58.730 43.478 0.00 0.00 0.00 2.32
5167 6642 3.560453 CCAAATACTCCCTCCGTTCCAAA 60.560 47.826 0.00 0.00 0.00 3.28
5168 6643 2.026636 CCAAATACTCCCTCCGTTCCAA 60.027 50.000 0.00 0.00 0.00 3.53
5169 6644 1.557832 CCAAATACTCCCTCCGTTCCA 59.442 52.381 0.00 0.00 0.00 3.53
5170 6645 1.558294 ACCAAATACTCCCTCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
5171 6646 3.181468 CCTACCAAATACTCCCTCCGTTC 60.181 52.174 0.00 0.00 0.00 3.95
5172 6647 2.770232 CCTACCAAATACTCCCTCCGTT 59.230 50.000 0.00 0.00 0.00 4.44
5173 6648 2.395619 CCTACCAAATACTCCCTCCGT 58.604 52.381 0.00 0.00 0.00 4.69
5174 6649 1.692519 CCCTACCAAATACTCCCTCCG 59.307 57.143 0.00 0.00 0.00 4.63
5175 6650 2.055579 CCCCTACCAAATACTCCCTCC 58.944 57.143 0.00 0.00 0.00 4.30
5176 6651 2.772930 ACCCCTACCAAATACTCCCTC 58.227 52.381 0.00 0.00 0.00 4.30
5177 6652 2.984989 ACCCCTACCAAATACTCCCT 57.015 50.000 0.00 0.00 0.00 4.20
5178 6653 4.500452 AGATACCCCTACCAAATACTCCC 58.500 47.826 0.00 0.00 0.00 4.30
5179 6654 4.531339 GGAGATACCCCTACCAAATACTCC 59.469 50.000 0.00 0.00 34.51 3.85
5180 6655 5.741962 GGAGATACCCCTACCAAATACTC 57.258 47.826 0.00 0.00 0.00 2.59
5261 6736 4.978099 AGCAGAGAAGGAACAGAAATTGA 58.022 39.130 0.00 0.00 0.00 2.57
5360 6835 4.225208 GCTGCTTCTCACAAATGTTCTTC 58.775 43.478 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.