Multiple sequence alignment - TraesCS2A01G383000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G383000 chr2A 100.000 3044 0 0 1 3044 627609175 627612218 0.000000e+00 5622
1 TraesCS2A01G383000 chr2D 90.682 2243 143 41 1 2228 483784194 483786385 0.000000e+00 2924
2 TraesCS2A01G383000 chr2D 87.290 417 44 8 2303 2715 412935235 412934824 4.600000e-128 468
3 TraesCS2A01G383000 chr2B 92.867 1514 64 18 743 2228 568634368 568635865 0.000000e+00 2158
4 TraesCS2A01G383000 chr2B 83.529 765 87 24 1 756 568633620 568634354 0.000000e+00 678
5 TraesCS2A01G383000 chr6D 87.621 412 47 3 2303 2712 191495633 191495224 2.750000e-130 475
6 TraesCS2A01G383000 chr3B 86.364 440 53 7 2288 2724 438413964 438414399 9.880000e-130 473
7 TraesCS2A01G383000 chr5D 86.854 426 51 5 2290 2713 502221050 502220628 3.550000e-129 472
8 TraesCS2A01G383000 chr1D 86.854 426 50 5 2291 2713 291247929 291247507 3.550000e-129 472
9 TraesCS2A01G383000 chr1D 80.431 511 70 16 2303 2802 178658613 178658122 2.230000e-96 363
10 TraesCS2A01G383000 chr6B 86.854 426 48 6 2303 2724 370163793 370163372 1.280000e-128 470
11 TraesCS2A01G383000 chr4B 87.379 412 49 3 2303 2713 535411843 535411434 1.280000e-128 470
12 TraesCS2A01G383000 chr7D 86.557 424 53 4 2303 2724 102388703 102389124 5.940000e-127 464
13 TraesCS2A01G383000 chr7D 84.694 196 28 2 1776 1970 414489579 414489385 8.610000e-46 195
14 TraesCS2A01G383000 chr7D 87.333 150 19 0 1322 1471 414489856 414489707 4.030000e-39 172
15 TraesCS2A01G383000 chr1B 86.557 424 52 5 2303 2724 461222578 461222158 2.140000e-126 462
16 TraesCS2A01G383000 chr1B 80.934 514 74 14 2303 2803 455993402 455993904 4.760000e-103 385
17 TraesCS2A01G383000 chr7A 86.559 186 23 2 1786 1970 476936082 476935898 1.430000e-48 204
18 TraesCS2A01G383000 chr7A 87.333 150 19 0 1322 1471 476936369 476936220 4.030000e-39 172
19 TraesCS2A01G383000 chr7B 85.405 185 27 0 1786 1970 428921203 428921019 3.100000e-45 193
20 TraesCS2A01G383000 chr7B 86.000 150 21 0 1322 1471 428921490 428921341 8.730000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G383000 chr2A 627609175 627612218 3043 False 5622 5622 100.000 1 3044 1 chr2A.!!$F1 3043
1 TraesCS2A01G383000 chr2D 483784194 483786385 2191 False 2924 2924 90.682 1 2228 1 chr2D.!!$F1 2227
2 TraesCS2A01G383000 chr2B 568633620 568635865 2245 False 1418 2158 88.198 1 2228 2 chr2B.!!$F1 2227
3 TraesCS2A01G383000 chr1B 455993402 455993904 502 False 385 385 80.934 2303 2803 1 chr1B.!!$F1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1012 0.033228 CCACTCCATGATCGCCTCTC 59.967 60.0 0.0 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2327 2409 0.034337 TAAACCTGCCGAGTGTGACC 59.966 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.673920 GAACGACACCACCAATGTTGT 59.326 47.619 0.00 0.00 44.91 3.32
41 42 1.021202 CACCACCAATGTTGTGACGT 58.979 50.000 0.00 0.00 39.79 4.34
46 47 3.500299 CCACCAATGTTGTGACGTATTCA 59.500 43.478 0.00 0.00 0.00 2.57
50 51 2.425578 TGTTGTGACGTATTCAGCGA 57.574 45.000 0.00 0.00 33.71 4.93
58 59 3.099362 GACGTATTCAGCGACACTACAG 58.901 50.000 0.00 0.00 0.00 2.74
110 112 2.814919 CACTAGTGTCGAGTGTCCTCTT 59.185 50.000 15.06 0.00 39.61 2.85
113 115 0.667792 GTGTCGAGTGTCCTCTTGCC 60.668 60.000 0.00 0.00 35.43 4.52
114 116 1.079750 GTCGAGTGTCCTCTTGCCC 60.080 63.158 0.00 0.00 35.43 5.36
116 118 2.636412 CGAGTGTCCTCTTGCCCGA 61.636 63.158 0.00 0.00 35.43 5.14
120 122 1.533033 TGTCCTCTTGCCCGAGTCA 60.533 57.895 0.00 0.00 0.00 3.41
137 141 0.666274 TCATGTTGTGAGTCGTCGGC 60.666 55.000 0.00 0.00 31.80 5.54
158 162 1.874562 CTGCTGTCCTTGCAAGAGC 59.125 57.895 28.05 25.96 40.13 4.09
178 182 2.183300 GGTGCCGCGTAGTGATGA 59.817 61.111 4.92 0.00 43.07 2.92
193 197 0.107017 GATGAGGGCCAAGCTAAGCA 60.107 55.000 6.18 0.00 0.00 3.91
195 199 0.332632 TGAGGGCCAAGCTAAGCATT 59.667 50.000 6.18 0.00 0.00 3.56
197 201 0.040204 AGGGCCAAGCTAAGCATTGT 59.960 50.000 6.18 0.00 0.00 2.71
200 204 1.273327 GGCCAAGCTAAGCATTGTGTT 59.727 47.619 0.00 0.00 0.00 3.32
210 214 0.660488 GCATTGTGTTGTGACGGTGA 59.340 50.000 0.00 0.00 0.00 4.02
237 241 2.279851 TGTGCTTCGTGTGACGGG 60.280 61.111 0.00 0.00 42.81 5.28
238 242 3.712881 GTGCTTCGTGTGACGGGC 61.713 66.667 0.00 0.00 42.81 6.13
240 244 3.414700 GCTTCGTGTGACGGGCAG 61.415 66.667 0.00 0.00 42.81 4.85
259 265 0.259065 GGGGGTGAGAGGGGATTTTC 59.741 60.000 0.00 0.00 0.00 2.29
264 270 1.003233 GTGAGAGGGGATTTTCCGTGT 59.997 52.381 0.00 0.00 37.43 4.49
271 277 1.605232 GGGATTTTCCGTGTGTTCGTT 59.395 47.619 0.00 0.00 37.43 3.85
272 278 2.603652 GGGATTTTCCGTGTGTTCGTTG 60.604 50.000 0.00 0.00 37.43 4.10
340 346 1.503542 GCTGCTTGATCCAACACCG 59.496 57.895 0.00 0.00 0.00 4.94
341 347 1.926511 GCTGCTTGATCCAACACCGG 61.927 60.000 0.00 0.00 0.00 5.28
386 392 2.350895 CTGATCGGCCCACCAACA 59.649 61.111 0.00 0.00 34.57 3.33
393 399 2.434331 GCCCACCAACACCTAGCA 59.566 61.111 0.00 0.00 0.00 3.49
450 456 6.528537 TTGATGATGAAATTGGGACGATTT 57.471 33.333 0.00 0.00 0.00 2.17
475 481 4.386312 CCTTTCAATATGGTAGGAGGGCAA 60.386 45.833 0.00 0.00 0.00 4.52
502 508 1.003928 ACTGCAGAGCATGATGGACAA 59.996 47.619 23.35 0.00 38.13 3.18
515 522 2.799126 TGGACAAGAACAGTGGTTGT 57.201 45.000 7.32 7.32 43.45 3.32
523 530 6.119536 ACAAGAACAGTGGTTGTCAAGAATA 58.880 36.000 0.00 0.00 39.73 1.75
662 677 9.712305 AATATGTATGAGGCTATAACAAGTGAC 57.288 33.333 0.00 0.00 0.00 3.67
671 686 7.402862 AGGCTATAACAAGTGACCATTTAAGT 58.597 34.615 0.00 0.00 0.00 2.24
747 789 8.198109 AGTTAGTACAGCATCATAAGTAACAGG 58.802 37.037 0.00 0.00 31.39 4.00
756 798 6.524734 CATCATAAGTAACAGGGCAGATGTA 58.475 40.000 0.00 0.00 0.00 2.29
769 811 3.539604 GCAGATGTAGAGGCAGTTCATT 58.460 45.455 0.00 0.00 0.00 2.57
844 892 1.806542 CTGCAAGATACTGTTTGGCGT 59.193 47.619 0.00 0.00 34.07 5.68
855 903 2.801679 CTGTTTGGCGTTTGCATTTCAT 59.198 40.909 0.00 0.00 45.35 2.57
944 1011 0.397675 TCCACTCCATGATCGCCTCT 60.398 55.000 0.00 0.00 0.00 3.69
945 1012 0.033228 CCACTCCATGATCGCCTCTC 59.967 60.000 0.00 0.00 0.00 3.20
962 1029 4.444022 GCCTCTCACTCATTCACACCATAT 60.444 45.833 0.00 0.00 0.00 1.78
1076 1143 5.052693 TCATCTCATAAACCCCATCAAGG 57.947 43.478 0.00 0.00 37.03 3.61
1484 1563 1.455849 CCTTCCTGTCAGTGCCCAA 59.544 57.895 0.00 0.00 0.00 4.12
1485 1564 0.038744 CCTTCCTGTCAGTGCCCAAT 59.961 55.000 0.00 0.00 0.00 3.16
1486 1565 1.457346 CTTCCTGTCAGTGCCCAATC 58.543 55.000 0.00 0.00 0.00 2.67
1487 1566 0.038166 TTCCTGTCAGTGCCCAATCC 59.962 55.000 0.00 0.00 0.00 3.01
1488 1567 1.379044 CCTGTCAGTGCCCAATCCC 60.379 63.158 0.00 0.00 0.00 3.85
1489 1568 1.379916 CTGTCAGTGCCCAATCCCA 59.620 57.895 0.00 0.00 0.00 4.37
1539 1618 0.819259 AATGCCGCGCCTCATGTATT 60.819 50.000 0.00 0.00 0.00 1.89
1540 1619 0.034756 ATGCCGCGCCTCATGTATTA 59.965 50.000 0.00 0.00 0.00 0.98
1541 1620 0.034756 TGCCGCGCCTCATGTATTAT 59.965 50.000 0.00 0.00 0.00 1.28
1647 1727 1.671379 GCCTCAAACCACCGTCCTC 60.671 63.158 0.00 0.00 0.00 3.71
1750 1830 0.674581 CATCATGCACGTGACAGGGT 60.675 55.000 22.23 12.09 0.00 4.34
2005 2085 0.538057 CTGAAACCAGCCTTGCTCCA 60.538 55.000 0.00 0.00 36.40 3.86
2050 2131 3.503891 CCCGGGCTTTGTTTAATTAACG 58.496 45.455 8.08 0.00 39.72 3.18
2110 2192 7.653311 AGTTTCCTTTCTGCATTTGTGTAATTC 59.347 33.333 0.00 0.00 0.00 2.17
2159 2241 6.594159 GTGCACCTGTTAATCTGTACTTGTAT 59.406 38.462 5.22 0.00 0.00 2.29
2184 2266 4.517453 TGTGTTGCTTGGTAATACAAGGTC 59.483 41.667 7.90 0.00 46.10 3.85
2187 2269 3.592059 TGCTTGGTAATACAAGGTCGTC 58.408 45.455 7.90 0.00 46.10 4.20
2205 2287 1.006825 TCAGCGATCAACGTGTTCCG 61.007 55.000 0.00 0.00 44.60 4.30
2228 2310 6.142320 CCGAAATGCTCAACTTTTTACTCAAC 59.858 38.462 0.00 0.00 0.00 3.18
2229 2311 6.912591 CGAAATGCTCAACTTTTTACTCAACT 59.087 34.615 0.00 0.00 0.00 3.16
2230 2312 7.096885 CGAAATGCTCAACTTTTTACTCAACTG 60.097 37.037 0.00 0.00 0.00 3.16
2231 2313 6.942532 ATGCTCAACTTTTTACTCAACTGA 57.057 33.333 0.00 0.00 0.00 3.41
2232 2314 6.119144 TGCTCAACTTTTTACTCAACTGAC 57.881 37.500 0.00 0.00 0.00 3.51
2233 2315 5.065988 TGCTCAACTTTTTACTCAACTGACC 59.934 40.000 0.00 0.00 0.00 4.02
2234 2316 5.728351 TCAACTTTTTACTCAACTGACCG 57.272 39.130 0.00 0.00 0.00 4.79
2235 2317 5.421277 TCAACTTTTTACTCAACTGACCGA 58.579 37.500 0.00 0.00 0.00 4.69
2236 2318 6.053005 TCAACTTTTTACTCAACTGACCGAT 58.947 36.000 0.00 0.00 0.00 4.18
2237 2319 6.540914 TCAACTTTTTACTCAACTGACCGATT 59.459 34.615 0.00 0.00 0.00 3.34
2238 2320 6.937436 ACTTTTTACTCAACTGACCGATTT 57.063 33.333 0.00 0.00 0.00 2.17
2239 2321 6.956047 ACTTTTTACTCAACTGACCGATTTC 58.044 36.000 0.00 0.00 0.00 2.17
2240 2322 6.766467 ACTTTTTACTCAACTGACCGATTTCT 59.234 34.615 0.00 0.00 0.00 2.52
2241 2323 7.282450 ACTTTTTACTCAACTGACCGATTTCTT 59.718 33.333 0.00 0.00 0.00 2.52
2242 2324 7.562454 TTTTACTCAACTGACCGATTTCTTT 57.438 32.000 0.00 0.00 0.00 2.52
2243 2325 7.562454 TTTACTCAACTGACCGATTTCTTTT 57.438 32.000 0.00 0.00 0.00 2.27
2244 2326 8.665643 TTTACTCAACTGACCGATTTCTTTTA 57.334 30.769 0.00 0.00 0.00 1.52
2245 2327 8.842358 TTACTCAACTGACCGATTTCTTTTAT 57.158 30.769 0.00 0.00 0.00 1.40
2246 2328 7.133891 ACTCAACTGACCGATTTCTTTTATG 57.866 36.000 0.00 0.00 0.00 1.90
2247 2329 6.149474 ACTCAACTGACCGATTTCTTTTATGG 59.851 38.462 0.00 0.00 0.00 2.74
2248 2330 6.234920 TCAACTGACCGATTTCTTTTATGGA 58.765 36.000 0.00 0.00 0.00 3.41
2249 2331 6.884295 TCAACTGACCGATTTCTTTTATGGAT 59.116 34.615 0.00 0.00 0.00 3.41
2250 2332 6.683974 ACTGACCGATTTCTTTTATGGATG 57.316 37.500 0.00 0.00 0.00 3.51
2251 2333 5.590259 ACTGACCGATTTCTTTTATGGATGG 59.410 40.000 0.00 0.00 0.00 3.51
2252 2334 4.887071 TGACCGATTTCTTTTATGGATGGG 59.113 41.667 0.00 0.00 0.00 4.00
2253 2335 4.867086 ACCGATTTCTTTTATGGATGGGT 58.133 39.130 0.00 0.00 0.00 4.51
2254 2336 4.644685 ACCGATTTCTTTTATGGATGGGTG 59.355 41.667 0.00 0.00 29.32 4.61
2255 2337 4.644685 CCGATTTCTTTTATGGATGGGTGT 59.355 41.667 0.00 0.00 0.00 4.16
2256 2338 5.450412 CCGATTTCTTTTATGGATGGGTGTG 60.450 44.000 0.00 0.00 0.00 3.82
2257 2339 5.450412 CGATTTCTTTTATGGATGGGTGTGG 60.450 44.000 0.00 0.00 0.00 4.17
2258 2340 2.733956 TCTTTTATGGATGGGTGTGGC 58.266 47.619 0.00 0.00 0.00 5.01
2259 2341 2.311542 TCTTTTATGGATGGGTGTGGCT 59.688 45.455 0.00 0.00 0.00 4.75
2260 2342 3.525609 TCTTTTATGGATGGGTGTGGCTA 59.474 43.478 0.00 0.00 0.00 3.93
2261 2343 3.576078 TTTATGGATGGGTGTGGCTAG 57.424 47.619 0.00 0.00 0.00 3.42
2262 2344 1.434188 TATGGATGGGTGTGGCTAGG 58.566 55.000 0.00 0.00 0.00 3.02
2263 2345 0.624500 ATGGATGGGTGTGGCTAGGT 60.625 55.000 0.00 0.00 0.00 3.08
2264 2346 1.271840 TGGATGGGTGTGGCTAGGTC 61.272 60.000 0.00 0.00 0.00 3.85
2265 2347 0.983378 GGATGGGTGTGGCTAGGTCT 60.983 60.000 0.00 0.00 0.00 3.85
2266 2348 0.466124 GATGGGTGTGGCTAGGTCTC 59.534 60.000 0.00 0.00 0.00 3.36
2267 2349 0.252696 ATGGGTGTGGCTAGGTCTCA 60.253 55.000 0.00 0.00 0.00 3.27
2268 2350 0.904865 TGGGTGTGGCTAGGTCTCAG 60.905 60.000 0.00 0.00 0.00 3.35
2269 2351 0.905337 GGGTGTGGCTAGGTCTCAGT 60.905 60.000 0.00 0.00 0.00 3.41
2270 2352 0.977395 GGTGTGGCTAGGTCTCAGTT 59.023 55.000 0.00 0.00 0.00 3.16
2271 2353 1.338200 GGTGTGGCTAGGTCTCAGTTG 60.338 57.143 0.00 0.00 0.00 3.16
2272 2354 1.618837 GTGTGGCTAGGTCTCAGTTGA 59.381 52.381 0.00 0.00 0.00 3.18
2273 2355 1.618837 TGTGGCTAGGTCTCAGTTGAC 59.381 52.381 0.00 0.00 36.31 3.18
2274 2356 1.896465 GTGGCTAGGTCTCAGTTGACT 59.104 52.381 0.00 0.00 37.16 3.41
2275 2357 1.895798 TGGCTAGGTCTCAGTTGACTG 59.104 52.381 4.77 4.77 45.08 3.51
2276 2358 1.404851 GGCTAGGTCTCAGTTGACTGC 60.405 57.143 6.27 0.00 43.46 4.40
2277 2359 1.734047 GCTAGGTCTCAGTTGACTGCG 60.734 57.143 6.27 0.52 43.46 5.18
2278 2360 0.888619 TAGGTCTCAGTTGACTGCGG 59.111 55.000 6.27 0.00 43.46 5.69
2279 2361 2.029844 GGTCTCAGTTGACTGCGGC 61.030 63.158 6.27 1.77 43.46 6.53
2280 2362 1.005630 GTCTCAGTTGACTGCGGCT 60.006 57.895 6.27 0.00 43.46 5.52
2281 2363 1.011451 GTCTCAGTTGACTGCGGCTC 61.011 60.000 6.27 0.00 43.46 4.70
2282 2364 1.005748 CTCAGTTGACTGCGGCTCA 60.006 57.895 6.27 0.00 43.46 4.26
2283 2365 0.601046 CTCAGTTGACTGCGGCTCAA 60.601 55.000 6.27 0.57 43.46 3.02
2284 2366 0.601046 TCAGTTGACTGCGGCTCAAG 60.601 55.000 6.27 0.00 43.46 3.02
2285 2367 0.882042 CAGTTGACTGCGGCTCAAGT 60.882 55.000 5.05 5.83 37.15 3.16
2286 2368 0.882042 AGTTGACTGCGGCTCAAGTG 60.882 55.000 10.46 0.00 31.36 3.16
2287 2369 0.880278 GTTGACTGCGGCTCAAGTGA 60.880 55.000 5.05 0.00 0.00 3.41
2288 2370 0.880278 TTGACTGCGGCTCAAGTGAC 60.880 55.000 0.00 0.00 0.00 3.67
2289 2371 1.300931 GACTGCGGCTCAAGTGACA 60.301 57.895 0.00 0.00 0.00 3.58
2290 2372 0.671781 GACTGCGGCTCAAGTGACAT 60.672 55.000 0.00 0.00 0.00 3.06
2291 2373 0.608130 ACTGCGGCTCAAGTGACATA 59.392 50.000 0.00 0.00 0.00 2.29
2292 2374 1.001974 ACTGCGGCTCAAGTGACATAA 59.998 47.619 0.00 0.00 0.00 1.90
2293 2375 2.283298 CTGCGGCTCAAGTGACATAAT 58.717 47.619 0.00 0.00 0.00 1.28
2294 2376 3.118775 ACTGCGGCTCAAGTGACATAATA 60.119 43.478 0.00 0.00 0.00 0.98
2295 2377 4.060900 CTGCGGCTCAAGTGACATAATAT 58.939 43.478 0.00 0.00 0.00 1.28
2296 2378 5.208463 TGCGGCTCAAGTGACATAATATA 57.792 39.130 0.00 0.00 0.00 0.86
2297 2379 5.793817 TGCGGCTCAAGTGACATAATATAT 58.206 37.500 0.00 0.00 0.00 0.86
2298 2380 6.930731 TGCGGCTCAAGTGACATAATATATA 58.069 36.000 0.00 0.00 0.00 0.86
2299 2381 7.035612 TGCGGCTCAAGTGACATAATATATAG 58.964 38.462 0.00 0.00 0.00 1.31
2300 2382 7.093945 TGCGGCTCAAGTGACATAATATATAGA 60.094 37.037 0.00 0.00 0.00 1.98
2301 2383 7.759886 GCGGCTCAAGTGACATAATATATAGAA 59.240 37.037 0.00 0.00 0.00 2.10
2302 2384 9.639601 CGGCTCAAGTGACATAATATATAGAAA 57.360 33.333 0.00 0.00 0.00 2.52
2327 2409 6.850752 AATTGGTTTTATGTCCCTAGTTGG 57.149 37.500 0.00 0.00 0.00 3.77
2342 2424 3.177194 TTGGGTCACACTCGGCAGG 62.177 63.158 0.00 0.00 0.00 4.85
2348 2430 0.034337 TCACACTCGGCAGGTTTACC 59.966 55.000 0.00 0.00 0.00 2.85
2353 2435 1.553704 ACTCGGCAGGTTTACCCTTAG 59.446 52.381 0.00 0.00 42.73 2.18
2358 2440 3.558533 CGGCAGGTTTACCCTTAGTTTCT 60.559 47.826 0.00 0.00 42.73 2.52
2359 2441 3.756963 GGCAGGTTTACCCTTAGTTTCTG 59.243 47.826 0.00 0.00 42.73 3.02
2364 2446 7.255836 GCAGGTTTACCCTTAGTTTCTGAAAAT 60.256 37.037 8.24 8.24 42.73 1.82
2365 2447 9.292195 CAGGTTTACCCTTAGTTTCTGAAAATA 57.708 33.333 4.09 5.27 42.73 1.40
2366 2448 9.871175 AGGTTTACCCTTAGTTTCTGAAAATAA 57.129 29.630 18.46 18.46 42.73 1.40
2374 2456 9.639601 CCTTAGTTTCTGAAAATAATTGTTCCC 57.360 33.333 19.46 0.00 31.50 3.97
2381 2463 4.040461 TGAAAATAATTGTTCCCGCCCAAA 59.960 37.500 0.00 0.00 0.00 3.28
2393 2475 1.007387 GCCCAAACCACTTTGCTCG 60.007 57.895 0.00 0.00 36.22 5.03
2416 2499 2.524569 ATGTTTTTGCCCTTTGACCG 57.475 45.000 0.00 0.00 0.00 4.79
2423 2506 0.106918 TGCCCTTTGACCGTTTGACT 60.107 50.000 0.00 0.00 0.00 3.41
2425 2508 0.310854 CCCTTTGACCGTTTGACTGC 59.689 55.000 0.00 0.00 0.00 4.40
2432 2515 2.215196 GACCGTTTGACTGCCACTTTA 58.785 47.619 0.00 0.00 0.00 1.85
2439 2522 5.575218 CGTTTGACTGCCACTTTAAAAACTT 59.425 36.000 0.00 0.00 0.00 2.66
2444 2527 8.001881 TGACTGCCACTTTAAAAACTTCATAA 57.998 30.769 0.00 0.00 0.00 1.90
2535 2618 4.678622 TGCATCTCATTTGCATTCATGAC 58.321 39.130 0.00 0.00 44.73 3.06
2553 2636 5.652014 TCATGACAAAAGTGTTGGAAAGTCT 59.348 36.000 0.00 0.00 38.41 3.24
2555 2638 5.253330 TGACAAAAGTGTTGGAAAGTCTCT 58.747 37.500 0.00 0.00 38.41 3.10
2560 2643 7.442666 ACAAAAGTGTTGGAAAGTCTCTATCTC 59.557 37.037 0.00 0.00 32.58 2.75
2568 2651 7.303182 TGGAAAGTCTCTATCTCAGTTTGAA 57.697 36.000 0.00 0.00 0.00 2.69
2583 2666 8.196103 TCTCAGTTTGAACTCATATGATCTCAG 58.804 37.037 5.72 0.00 37.08 3.35
2605 2688 8.402798 TCAGCATGAACAGTAAAATCCTAAAA 57.597 30.769 0.00 0.00 45.97 1.52
2662 2755 4.572985 CATTGACCAATGTTGTGAGTGT 57.427 40.909 13.10 0.00 42.32 3.55
2666 2759 3.761218 TGACCAATGTTGTGAGTGTTTGT 59.239 39.130 0.00 0.00 0.00 2.83
2677 2770 6.993786 TGTGAGTGTTTGTCAAGTTTCATA 57.006 33.333 0.00 0.00 0.00 2.15
2680 2773 6.912591 GTGAGTGTTTGTCAAGTTTCATAAGG 59.087 38.462 0.00 0.00 0.00 2.69
2681 2774 6.601613 TGAGTGTTTGTCAAGTTTCATAAGGT 59.398 34.615 0.00 0.00 0.00 3.50
2686 2779 9.126151 TGTTTGTCAAGTTTCATAAGGTAATGA 57.874 29.630 0.00 0.00 34.07 2.57
2692 2785 8.664798 TCAAGTTTCATAAGGTAATGACATTCG 58.335 33.333 3.36 0.00 35.63 3.34
2695 2788 6.918892 TTCATAAGGTAATGACATTCGTGG 57.081 37.500 3.36 0.00 35.63 4.94
2697 2790 6.645306 TCATAAGGTAATGACATTCGTGGAA 58.355 36.000 3.36 0.00 30.92 3.53
2700 2793 4.906618 AGGTAATGACATTCGTGGAAGTT 58.093 39.130 3.36 0.00 0.00 2.66
2702 2795 4.454504 GGTAATGACATTCGTGGAAGTTGT 59.545 41.667 3.36 0.00 0.00 3.32
2703 2796 5.640357 GGTAATGACATTCGTGGAAGTTGTA 59.360 40.000 3.36 0.00 0.00 2.41
2704 2797 5.862924 AATGACATTCGTGGAAGTTGTAG 57.137 39.130 0.00 0.00 0.00 2.74
2708 2801 3.880490 ACATTCGTGGAAGTTGTAGCAAA 59.120 39.130 0.00 0.00 0.00 3.68
2709 2802 4.336993 ACATTCGTGGAAGTTGTAGCAAAA 59.663 37.500 0.00 0.00 0.00 2.44
2710 2803 4.966965 TTCGTGGAAGTTGTAGCAAAAA 57.033 36.364 0.00 0.00 0.00 1.94
2737 2830 8.579682 AATAAGAAACAAAACTGATGCTTCAC 57.420 30.769 0.00 0.00 0.00 3.18
2804 2897 2.734755 CCATGAATGGCAGTCCCTAA 57.265 50.000 12.93 0.00 41.75 2.69
2805 2898 3.017048 CCATGAATGGCAGTCCCTAAA 57.983 47.619 12.93 0.00 41.75 1.85
2806 2899 3.569491 CCATGAATGGCAGTCCCTAAAT 58.431 45.455 12.93 0.00 41.75 1.40
2807 2900 3.319972 CCATGAATGGCAGTCCCTAAATG 59.680 47.826 12.93 8.65 41.75 2.32
2808 2901 3.737559 TGAATGGCAGTCCCTAAATGT 57.262 42.857 12.93 0.00 0.00 2.71
2809 2902 3.620488 TGAATGGCAGTCCCTAAATGTC 58.380 45.455 12.93 0.00 0.00 3.06
2810 2903 3.010027 TGAATGGCAGTCCCTAAATGTCA 59.990 43.478 12.93 0.00 32.31 3.58
2811 2904 2.787473 TGGCAGTCCCTAAATGTCAG 57.213 50.000 0.00 0.00 0.00 3.51
2812 2905 1.985159 TGGCAGTCCCTAAATGTCAGT 59.015 47.619 0.00 0.00 0.00 3.41
2813 2906 2.375174 TGGCAGTCCCTAAATGTCAGTT 59.625 45.455 0.00 0.00 0.00 3.16
2814 2907 3.585289 TGGCAGTCCCTAAATGTCAGTTA 59.415 43.478 0.00 0.00 0.00 2.24
2815 2908 4.192317 GGCAGTCCCTAAATGTCAGTTAG 58.808 47.826 12.16 12.16 0.00 2.34
2816 2909 3.623510 GCAGTCCCTAAATGTCAGTTAGC 59.376 47.826 13.41 2.17 0.00 3.09
2817 2910 4.624125 GCAGTCCCTAAATGTCAGTTAGCT 60.624 45.833 13.41 4.22 0.00 3.32
2818 2911 5.112686 CAGTCCCTAAATGTCAGTTAGCTC 58.887 45.833 13.41 6.82 0.00 4.09
2819 2912 4.777896 AGTCCCTAAATGTCAGTTAGCTCA 59.222 41.667 13.41 0.00 0.00 4.26
2820 2913 5.248477 AGTCCCTAAATGTCAGTTAGCTCAA 59.752 40.000 13.41 0.00 0.00 3.02
2821 2914 5.938125 GTCCCTAAATGTCAGTTAGCTCAAA 59.062 40.000 13.41 0.00 0.00 2.69
2822 2915 6.430000 GTCCCTAAATGTCAGTTAGCTCAAAA 59.570 38.462 13.41 0.00 0.00 2.44
2823 2916 6.655003 TCCCTAAATGTCAGTTAGCTCAAAAG 59.345 38.462 13.41 0.27 0.00 2.27
2824 2917 6.655003 CCCTAAATGTCAGTTAGCTCAAAAGA 59.345 38.462 13.41 0.00 0.00 2.52
2825 2918 7.148340 CCCTAAATGTCAGTTAGCTCAAAAGAG 60.148 40.741 13.41 0.00 0.00 2.85
2826 2919 7.604164 CCTAAATGTCAGTTAGCTCAAAAGAGA 59.396 37.037 13.41 0.00 0.00 3.10
2827 2920 7.807977 AAATGTCAGTTAGCTCAAAAGAGAA 57.192 32.000 0.00 0.00 0.00 2.87
2828 2921 7.992754 AATGTCAGTTAGCTCAAAAGAGAAT 57.007 32.000 0.00 0.00 0.00 2.40
2829 2922 6.791887 TGTCAGTTAGCTCAAAAGAGAATG 57.208 37.500 0.00 0.00 0.00 2.67
2830 2923 6.291377 TGTCAGTTAGCTCAAAAGAGAATGT 58.709 36.000 0.00 0.00 0.00 2.71
2831 2924 6.425114 TGTCAGTTAGCTCAAAAGAGAATGTC 59.575 38.462 0.00 0.00 0.00 3.06
2832 2925 6.425114 GTCAGTTAGCTCAAAAGAGAATGTCA 59.575 38.462 0.00 0.00 0.00 3.58
2833 2926 6.992123 TCAGTTAGCTCAAAAGAGAATGTCAA 59.008 34.615 0.00 0.00 0.00 3.18
2834 2927 7.663081 TCAGTTAGCTCAAAAGAGAATGTCAAT 59.337 33.333 0.00 0.00 0.00 2.57
2835 2928 8.295288 CAGTTAGCTCAAAAGAGAATGTCAATT 58.705 33.333 0.00 0.00 0.00 2.32
2836 2929 9.507329 AGTTAGCTCAAAAGAGAATGTCAATTA 57.493 29.630 0.00 0.00 0.00 1.40
2837 2930 9.766277 GTTAGCTCAAAAGAGAATGTCAATTAG 57.234 33.333 0.00 0.00 0.00 1.73
2838 2931 6.850555 AGCTCAAAAGAGAATGTCAATTAGC 58.149 36.000 0.00 0.00 0.00 3.09
2839 2932 6.658391 AGCTCAAAAGAGAATGTCAATTAGCT 59.342 34.615 0.00 0.00 0.00 3.32
2840 2933 6.966066 GCTCAAAAGAGAATGTCAATTAGCTC 59.034 38.462 0.00 0.00 0.00 4.09
2841 2934 7.148272 GCTCAAAAGAGAATGTCAATTAGCTCT 60.148 37.037 0.00 0.00 31.52 4.09
2842 2935 8.627208 TCAAAAGAGAATGTCAATTAGCTCTT 57.373 30.769 0.00 0.00 38.03 2.85
2843 2936 9.725019 TCAAAAGAGAATGTCAATTAGCTCTTA 57.275 29.630 0.00 0.00 36.59 2.10
2847 2940 9.732130 AAGAGAATGTCAATTAGCTCTTAAACT 57.268 29.630 0.00 0.00 36.19 2.66
2848 2941 9.732130 AGAGAATGTCAATTAGCTCTTAAACTT 57.268 29.630 0.00 0.00 27.67 2.66
2873 2966 7.883229 TTTTTGAGCGAAAGAGAAAAAGTTT 57.117 28.000 0.00 0.00 0.00 2.66
2874 2967 8.973835 TTTTTGAGCGAAAGAGAAAAAGTTTA 57.026 26.923 0.00 0.00 0.00 2.01
2875 2968 8.973835 TTTTGAGCGAAAGAGAAAAAGTTTAA 57.026 26.923 0.00 0.00 0.00 1.52
2876 2969 8.614994 TTTGAGCGAAAGAGAAAAAGTTTAAG 57.385 30.769 0.00 0.00 0.00 1.85
2877 2970 6.199393 TGAGCGAAAGAGAAAAAGTTTAAGC 58.801 36.000 0.00 0.00 0.00 3.09
2878 2971 5.520632 AGCGAAAGAGAAAAAGTTTAAGCC 58.479 37.500 0.00 0.00 0.00 4.35
2879 2972 4.680110 GCGAAAGAGAAAAAGTTTAAGCCC 59.320 41.667 0.00 0.00 0.00 5.19
2880 2973 5.220381 CGAAAGAGAAAAAGTTTAAGCCCC 58.780 41.667 0.00 0.00 0.00 5.80
2881 2974 5.009710 CGAAAGAGAAAAAGTTTAAGCCCCT 59.990 40.000 0.00 0.00 0.00 4.79
2882 2975 6.406692 AAAGAGAAAAAGTTTAAGCCCCTC 57.593 37.500 0.00 0.00 0.00 4.30
2883 2976 5.061721 AGAGAAAAAGTTTAAGCCCCTCA 57.938 39.130 0.00 0.00 0.00 3.86
2884 2977 5.454966 AGAGAAAAAGTTTAAGCCCCTCAA 58.545 37.500 0.00 0.00 0.00 3.02
2885 2978 5.897250 AGAGAAAAAGTTTAAGCCCCTCAAA 59.103 36.000 0.00 0.00 0.00 2.69
2886 2979 6.382859 AGAGAAAAAGTTTAAGCCCCTCAAAA 59.617 34.615 0.00 0.00 0.00 2.44
2887 2980 6.953101 AGAAAAAGTTTAAGCCCCTCAAAAA 58.047 32.000 0.00 0.00 0.00 1.94
2907 3000 4.479156 AAAAATGTTAGGGGTGGAGGAA 57.521 40.909 0.00 0.00 0.00 3.36
2908 3001 4.479156 AAAATGTTAGGGGTGGAGGAAA 57.521 40.909 0.00 0.00 0.00 3.13
2909 3002 3.451402 AATGTTAGGGGTGGAGGAAAC 57.549 47.619 0.00 0.00 0.00 2.78
2910 3003 0.688487 TGTTAGGGGTGGAGGAAACG 59.312 55.000 0.00 0.00 0.00 3.60
2911 3004 0.035725 GTTAGGGGTGGAGGAAACGG 60.036 60.000 0.00 0.00 0.00 4.44
2912 3005 0.474273 TTAGGGGTGGAGGAAACGGT 60.474 55.000 0.00 0.00 0.00 4.83
2913 3006 0.413037 TAGGGGTGGAGGAAACGGTA 59.587 55.000 0.00 0.00 0.00 4.02
2914 3007 0.908180 AGGGGTGGAGGAAACGGTAG 60.908 60.000 0.00 0.00 0.00 3.18
2915 3008 1.078637 GGGTGGAGGAAACGGTAGC 60.079 63.158 0.00 0.00 0.00 3.58
2916 3009 1.551019 GGGTGGAGGAAACGGTAGCT 61.551 60.000 0.00 0.00 0.00 3.32
2917 3010 0.108281 GGTGGAGGAAACGGTAGCTC 60.108 60.000 0.00 0.00 0.00 4.09
2918 3011 0.108281 GTGGAGGAAACGGTAGCTCC 60.108 60.000 0.00 0.00 0.00 4.70
2919 3012 0.252103 TGGAGGAAACGGTAGCTCCT 60.252 55.000 0.00 1.08 42.44 3.69
2920 3013 1.006281 TGGAGGAAACGGTAGCTCCTA 59.994 52.381 0.00 0.00 39.76 2.94
2921 3014 1.408340 GGAGGAAACGGTAGCTCCTAC 59.592 57.143 1.48 0.00 39.76 3.18
2928 3021 2.339403 GGTAGCTCCTACCGGTAGC 58.661 63.158 32.43 25.45 45.49 3.58
2929 3022 0.178995 GGTAGCTCCTACCGGTAGCT 60.179 60.000 32.43 30.27 45.49 3.32
2930 3023 1.237533 GTAGCTCCTACCGGTAGCTC 58.762 60.000 32.43 22.36 41.19 4.09
2931 3024 0.110104 TAGCTCCTACCGGTAGCTCC 59.890 60.000 32.43 21.57 41.19 4.70
2932 3025 1.152715 GCTCCTACCGGTAGCTCCT 60.153 63.158 32.43 0.00 33.43 3.69
2933 3026 0.110104 GCTCCTACCGGTAGCTCCTA 59.890 60.000 32.43 15.13 33.43 2.94
2934 3027 1.272037 GCTCCTACCGGTAGCTCCTAT 60.272 57.143 32.43 0.00 33.43 2.57
2935 3028 2.818593 GCTCCTACCGGTAGCTCCTATT 60.819 54.545 32.43 0.00 33.43 1.73
2936 3029 2.820787 CTCCTACCGGTAGCTCCTATTG 59.179 54.545 32.43 17.86 31.95 1.90
2937 3030 1.893801 CCTACCGGTAGCTCCTATTGG 59.106 57.143 32.43 15.25 31.95 3.16
2938 3031 2.490351 CCTACCGGTAGCTCCTATTGGA 60.490 54.545 32.43 0.00 40.95 3.53
2939 3032 2.170012 ACCGGTAGCTCCTATTGGAA 57.830 50.000 4.49 0.00 42.66 3.53
2940 3033 2.474112 ACCGGTAGCTCCTATTGGAAA 58.526 47.619 4.49 0.00 42.66 3.13
2941 3034 2.169978 ACCGGTAGCTCCTATTGGAAAC 59.830 50.000 4.49 0.00 42.66 2.78
2942 3035 2.470821 CGGTAGCTCCTATTGGAAACG 58.529 52.381 0.00 0.00 42.66 3.60
2943 3036 2.802057 CGGTAGCTCCTATTGGAAACGG 60.802 54.545 0.00 0.00 42.66 4.44
2944 3037 2.169978 GGTAGCTCCTATTGGAAACGGT 59.830 50.000 0.00 0.00 42.66 4.83
2945 3038 3.385755 GGTAGCTCCTATTGGAAACGGTA 59.614 47.826 0.00 0.00 42.66 4.02
2946 3039 3.821421 AGCTCCTATTGGAAACGGTAG 57.179 47.619 0.00 0.00 42.66 3.18
2947 3040 3.371965 AGCTCCTATTGGAAACGGTAGA 58.628 45.455 0.00 0.00 42.66 2.59
2948 3041 3.967987 AGCTCCTATTGGAAACGGTAGAT 59.032 43.478 0.00 0.00 42.66 1.98
2949 3042 4.409247 AGCTCCTATTGGAAACGGTAGATT 59.591 41.667 0.00 0.00 42.66 2.40
2950 3043 5.104485 AGCTCCTATTGGAAACGGTAGATTT 60.104 40.000 0.00 0.00 42.66 2.17
2951 3044 5.007724 GCTCCTATTGGAAACGGTAGATTTG 59.992 44.000 0.00 0.00 42.66 2.32
2952 3045 6.302535 TCCTATTGGAAACGGTAGATTTGA 57.697 37.500 0.00 0.00 39.87 2.69
2953 3046 6.713276 TCCTATTGGAAACGGTAGATTTGAA 58.287 36.000 0.00 0.00 39.87 2.69
2954 3047 7.169591 TCCTATTGGAAACGGTAGATTTGAAA 58.830 34.615 0.00 0.00 39.87 2.69
2955 3048 7.120138 TCCTATTGGAAACGGTAGATTTGAAAC 59.880 37.037 0.00 0.00 39.87 2.78
2956 3049 6.642707 ATTGGAAACGGTAGATTTGAAACA 57.357 33.333 0.00 0.00 0.00 2.83
2957 3050 6.452494 TTGGAAACGGTAGATTTGAAACAA 57.548 33.333 0.00 0.00 0.00 2.83
2958 3051 6.452494 TGGAAACGGTAGATTTGAAACAAA 57.548 33.333 0.00 0.00 0.00 2.83
2959 3052 7.045126 TGGAAACGGTAGATTTGAAACAAAT 57.955 32.000 9.06 9.06 0.00 2.32
2960 3053 8.167605 TGGAAACGGTAGATTTGAAACAAATA 57.832 30.769 9.24 0.00 0.00 1.40
2961 3054 8.630917 TGGAAACGGTAGATTTGAAACAAATAA 58.369 29.630 9.24 0.28 0.00 1.40
2962 3055 9.634163 GGAAACGGTAGATTTGAAACAAATAAT 57.366 29.630 9.24 5.16 0.00 1.28
2964 3057 9.974980 AAACGGTAGATTTGAAACAAATAATGT 57.025 25.926 9.24 3.26 46.82 2.71
2965 3058 8.964420 ACGGTAGATTTGAAACAAATAATGTG 57.036 30.769 9.24 4.14 42.99 3.21
2966 3059 8.788806 ACGGTAGATTTGAAACAAATAATGTGA 58.211 29.630 9.24 0.00 42.99 3.58
2967 3060 9.619316 CGGTAGATTTGAAACAAATAATGTGAA 57.381 29.630 9.24 0.00 42.99 3.18
3016 3109 8.475359 GTTTTGAAAAACACAAACATTGTTTGG 58.525 29.630 33.86 26.55 44.56 3.28
3017 3110 7.496529 TTGAAAAACACAAACATTGTTTGGA 57.503 28.000 33.86 13.08 44.56 3.53
3018 3111 7.496529 TGAAAAACACAAACATTGTTTGGAA 57.503 28.000 33.86 15.02 44.56 3.53
3019 3112 8.103948 TGAAAAACACAAACATTGTTTGGAAT 57.896 26.923 33.86 21.39 44.56 3.01
3020 3113 8.571336 TGAAAAACACAAACATTGTTTGGAATT 58.429 25.926 33.86 24.54 44.56 2.17
3021 3114 9.404348 GAAAAACACAAACATTGTTTGGAATTT 57.596 25.926 33.86 27.67 44.56 1.82
3022 3115 9.755804 AAAAACACAAACATTGTTTGGAATTTT 57.244 22.222 33.86 29.81 44.56 1.82
3023 3116 8.739649 AAACACAAACATTGTTTGGAATTTTG 57.260 26.923 33.86 26.04 43.84 2.44
3024 3117 7.678947 ACACAAACATTGTTTGGAATTTTGA 57.321 28.000 33.86 0.00 43.23 2.69
3025 3118 8.103948 ACACAAACATTGTTTGGAATTTTGAA 57.896 26.923 33.86 0.00 43.23 2.69
3026 3119 8.020244 ACACAAACATTGTTTGGAATTTTGAAC 58.980 29.630 33.86 0.00 43.23 3.18
3027 3120 8.019669 CACAAACATTGTTTGGAATTTTGAACA 58.980 29.630 33.86 0.00 43.23 3.18
3028 3121 8.738106 ACAAACATTGTTTGGAATTTTGAACAT 58.262 25.926 33.86 14.37 42.22 2.71
3029 3122 9.570488 CAAACATTGTTTGGAATTTTGAACATT 57.430 25.926 27.24 0.00 32.64 2.71
3030 3123 9.570488 AAACATTGTTTGGAATTTTGAACATTG 57.430 25.926 13.80 14.89 38.40 2.82
3031 3124 8.278729 ACATTGTTTGGAATTTTGAACATTGT 57.721 26.923 15.66 15.66 39.64 2.71
3032 3125 8.738106 ACATTGTTTGGAATTTTGAACATTGTT 58.262 25.926 0.63 0.63 40.63 2.83
3033 3126 9.570488 CATTGTTTGGAATTTTGAACATTGTTT 57.430 25.926 3.08 0.00 32.76 2.83
3034 3127 8.961294 TTGTTTGGAATTTTGAACATTGTTTG 57.039 26.923 3.08 0.00 32.64 2.93
3035 3128 8.327941 TGTTTGGAATTTTGAACATTGTTTGA 57.672 26.923 3.08 0.00 0.00 2.69
3036 3129 8.449397 TGTTTGGAATTTTGAACATTGTTTGAG 58.551 29.630 3.08 0.00 0.00 3.02
3037 3130 8.663911 GTTTGGAATTTTGAACATTGTTTGAGA 58.336 29.630 3.08 0.00 0.00 3.27
3038 3131 8.783833 TTGGAATTTTGAACATTGTTTGAGAA 57.216 26.923 3.08 0.00 0.00 2.87
3039 3132 8.783833 TGGAATTTTGAACATTGTTTGAGAAA 57.216 26.923 3.08 3.86 0.00 2.52
3040 3133 8.663911 TGGAATTTTGAACATTGTTTGAGAAAC 58.336 29.630 3.08 0.00 41.73 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.485038 TGTAGTGTCGCTGAATACGTCA 59.515 45.455 0.00 0.00 34.17 4.35
41 42 1.202256 CGCCTGTAGTGTCGCTGAATA 60.202 52.381 0.00 0.00 0.00 1.75
46 47 0.458543 CATTCGCCTGTAGTGTCGCT 60.459 55.000 0.00 0.00 0.00 4.93
50 51 0.108138 GCTCCATTCGCCTGTAGTGT 60.108 55.000 0.00 0.00 0.00 3.55
58 59 3.499737 CACACCGCTCCATTCGCC 61.500 66.667 0.00 0.00 0.00 5.54
102 104 0.904865 ATGACTCGGGCAAGAGGACA 60.905 55.000 12.68 11.81 42.31 4.02
110 112 0.320683 CTCACAACATGACTCGGGCA 60.321 55.000 0.00 0.00 32.37 5.36
113 115 1.335964 ACGACTCACAACATGACTCGG 60.336 52.381 0.00 0.00 43.78 4.63
114 116 1.979469 GACGACTCACAACATGACTCG 59.021 52.381 0.00 4.96 44.54 4.18
116 118 1.335964 CCGACGACTCACAACATGACT 60.336 52.381 0.00 0.00 32.37 3.41
120 122 1.733041 CGCCGACGACTCACAACAT 60.733 57.895 0.00 0.00 43.93 2.71
137 141 2.974489 CTTGCAAGGACAGCAGCCG 61.974 63.158 19.14 0.00 43.75 5.52
146 150 1.004560 CACCGAGCTCTTGCAAGGA 60.005 57.895 25.73 11.84 42.74 3.36
158 162 3.411418 ATCACTACGCGGCACCGAG 62.411 63.158 14.43 12.82 44.41 4.63
178 182 0.040204 ACAATGCTTAGCTTGGCCCT 59.960 50.000 16.35 0.00 0.00 5.19
193 197 0.944386 GCTCACCGTCACAACACAAT 59.056 50.000 0.00 0.00 0.00 2.71
195 199 1.880796 CGCTCACCGTCACAACACA 60.881 57.895 0.00 0.00 0.00 3.72
197 201 2.279851 CCGCTCACCGTCACAACA 60.280 61.111 0.00 0.00 34.38 3.33
200 204 4.357947 GCTCCGCTCACCGTCACA 62.358 66.667 0.00 0.00 34.38 3.58
217 221 2.927618 CGTCACACGAAGCACACGG 61.928 63.158 0.00 0.00 46.05 4.94
237 241 4.741239 TCCCCTCTCACCCCCTGC 62.741 72.222 0.00 0.00 0.00 4.85
238 242 0.921256 AAATCCCCTCTCACCCCCTG 60.921 60.000 0.00 0.00 0.00 4.45
240 244 0.259065 GAAAATCCCCTCTCACCCCC 59.741 60.000 0.00 0.00 0.00 5.40
259 265 0.315869 GCTTCACAACGAACACACGG 60.316 55.000 0.00 0.00 37.61 4.94
264 270 0.103390 TCCTCGCTTCACAACGAACA 59.897 50.000 0.00 0.00 37.94 3.18
271 277 2.636412 CCGGTCTCCTCGCTTCACA 61.636 63.158 0.00 0.00 0.00 3.58
272 278 2.182030 CCGGTCTCCTCGCTTCAC 59.818 66.667 0.00 0.00 0.00 3.18
309 315 0.035056 AAGCAGCCTAGCACCGATTT 60.035 50.000 0.00 0.00 36.85 2.17
312 318 1.617018 ATCAAGCAGCCTAGCACCGA 61.617 55.000 0.00 0.00 36.85 4.69
340 346 0.178947 TTGGATTGGTTGTCCCACCC 60.179 55.000 0.00 0.00 45.19 4.61
341 347 1.824852 GATTGGATTGGTTGTCCCACC 59.175 52.381 0.00 0.00 45.19 4.61
428 434 6.405731 GGAAAATCGTCCCAATTTCATCATCA 60.406 38.462 0.00 0.00 34.31 3.07
431 437 5.016173 AGGAAAATCGTCCCAATTTCATCA 58.984 37.500 0.00 0.00 38.59 3.07
450 456 4.141251 GCCCTCCTACCATATTGAAAGGAA 60.141 45.833 0.00 0.00 35.97 3.36
475 481 2.992576 ATGCTCTGCAGTGGCCCAT 61.993 57.895 23.56 13.91 43.65 4.00
485 491 2.034104 TCTTGTCCATCATGCTCTGC 57.966 50.000 0.00 0.00 0.00 4.26
502 508 6.299141 ACATATTCTTGACAACCACTGTTCT 58.701 36.000 0.00 0.00 38.84 3.01
676 691 7.866729 TGCTTATTGTCAGTATTTTGAAACGA 58.133 30.769 0.00 0.00 0.00 3.85
677 692 7.201266 GCTGCTTATTGTCAGTATTTTGAAACG 60.201 37.037 0.00 0.00 33.09 3.60
678 693 7.062255 GGCTGCTTATTGTCAGTATTTTGAAAC 59.938 37.037 0.00 0.00 33.09 2.78
679 694 7.039784 AGGCTGCTTATTGTCAGTATTTTGAAA 60.040 33.333 0.00 0.00 33.09 2.69
691 706 3.674410 GCTTTTCCAGGCTGCTTATTGTC 60.674 47.826 9.56 0.00 0.00 3.18
692 707 2.232208 GCTTTTCCAGGCTGCTTATTGT 59.768 45.455 9.56 0.00 0.00 2.71
693 708 2.733227 CGCTTTTCCAGGCTGCTTATTG 60.733 50.000 9.56 0.00 0.00 1.90
698 713 0.823356 TTTCGCTTTTCCAGGCTGCT 60.823 50.000 9.56 0.00 0.00 4.24
721 736 8.198109 CCTGTTACTTATGATGCTGTACTAACT 58.802 37.037 0.00 0.00 0.00 2.24
727 742 4.163268 TGCCCTGTTACTTATGATGCTGTA 59.837 41.667 0.00 0.00 0.00 2.74
730 745 3.455910 TCTGCCCTGTTACTTATGATGCT 59.544 43.478 0.00 0.00 0.00 3.79
731 746 3.808728 TCTGCCCTGTTACTTATGATGC 58.191 45.455 0.00 0.00 0.00 3.91
733 748 5.636903 ACATCTGCCCTGTTACTTATGAT 57.363 39.130 0.00 0.00 0.00 2.45
747 789 1.208052 TGAACTGCCTCTACATCTGCC 59.792 52.381 0.00 0.00 0.00 4.85
756 798 4.851843 TGAATCATGAATGAACTGCCTCT 58.148 39.130 0.00 0.00 40.69 3.69
769 811 6.482308 CAGCTCTCACAATGTATGAATCATGA 59.518 38.462 5.91 0.00 0.00 3.07
837 885 2.992543 GCTATGAAATGCAAACGCCAAA 59.007 40.909 0.00 0.00 0.00 3.28
844 892 3.006644 TGCCAACTGCTATGAAATGCAAA 59.993 39.130 0.00 0.00 42.00 3.68
855 903 0.250727 GGAGTGGTTGCCAACTGCTA 60.251 55.000 7.62 0.00 42.00 3.49
944 1011 5.045651 AGTTGGATATGGTGTGAATGAGTGA 60.046 40.000 0.00 0.00 0.00 3.41
945 1012 5.188434 AGTTGGATATGGTGTGAATGAGTG 58.812 41.667 0.00 0.00 0.00 3.51
962 1029 1.993653 CCTGCTGGGATGAGTTGGA 59.006 57.895 0.71 0.00 37.23 3.53
1027 1094 4.211794 GTGCTTGTGTTTGATTTGATTGGG 59.788 41.667 0.00 0.00 0.00 4.12
1076 1143 1.962321 GAGAGGAGAAGGCGGGGTTC 61.962 65.000 0.00 0.00 0.00 3.62
1458 1537 1.915078 CTGACAGGAAGGCCGGGAAT 61.915 60.000 2.18 0.00 39.96 3.01
1539 1618 4.263905 ACCATGAGGAACCTGCAAGAAATA 60.264 41.667 0.00 0.00 38.69 1.40
1540 1619 3.094572 CCATGAGGAACCTGCAAGAAAT 58.905 45.455 0.00 0.00 36.89 2.17
1541 1620 2.158475 ACCATGAGGAACCTGCAAGAAA 60.158 45.455 0.00 0.00 38.69 2.52
1647 1727 0.246086 AGACGAGCAAGAGAAGCCTG 59.754 55.000 0.00 0.00 0.00 4.85
1750 1830 2.355197 CATGATCGCAGTGGTTAACCA 58.645 47.619 23.69 23.69 45.30 3.67
1911 1991 3.358076 GAGGAAGGAGGCCACGACG 62.358 68.421 5.01 0.00 0.00 5.12
2050 2131 4.260579 GCAACATTTAAAAACACAGGCACC 60.261 41.667 0.00 0.00 0.00 5.01
2159 2241 5.361285 ACCTTGTATTACCAAGCAACACAAA 59.639 36.000 0.00 0.00 40.40 2.83
2184 2266 0.091344 GAACACGTTGATCGCTGACG 59.909 55.000 8.54 8.54 44.19 4.35
2187 2269 1.006825 TCGGAACACGTTGATCGCTG 61.007 55.000 0.00 0.00 44.69 5.18
2205 2287 7.915397 TCAGTTGAGTAAAAAGTTGAGCATTTC 59.085 33.333 0.00 0.00 0.00 2.17
2228 2310 5.009010 CCCATCCATAAAAGAAATCGGTCAG 59.991 44.000 0.00 0.00 0.00 3.51
2229 2311 4.887071 CCCATCCATAAAAGAAATCGGTCA 59.113 41.667 0.00 0.00 0.00 4.02
2230 2312 4.887655 ACCCATCCATAAAAGAAATCGGTC 59.112 41.667 0.00 0.00 0.00 4.79
2231 2313 4.644685 CACCCATCCATAAAAGAAATCGGT 59.355 41.667 0.00 0.00 0.00 4.69
2232 2314 4.644685 ACACCCATCCATAAAAGAAATCGG 59.355 41.667 0.00 0.00 0.00 4.18
2233 2315 5.450412 CCACACCCATCCATAAAAGAAATCG 60.450 44.000 0.00 0.00 0.00 3.34
2234 2316 5.682212 GCCACACCCATCCATAAAAGAAATC 60.682 44.000 0.00 0.00 0.00 2.17
2235 2317 4.162131 GCCACACCCATCCATAAAAGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
2236 2318 3.513515 GCCACACCCATCCATAAAAGAAA 59.486 43.478 0.00 0.00 0.00 2.52
2237 2319 3.096092 GCCACACCCATCCATAAAAGAA 58.904 45.455 0.00 0.00 0.00 2.52
2238 2320 2.311542 AGCCACACCCATCCATAAAAGA 59.688 45.455 0.00 0.00 0.00 2.52
2239 2321 2.738743 AGCCACACCCATCCATAAAAG 58.261 47.619 0.00 0.00 0.00 2.27
2240 2322 2.917713 AGCCACACCCATCCATAAAA 57.082 45.000 0.00 0.00 0.00 1.52
2241 2323 2.174639 CCTAGCCACACCCATCCATAAA 59.825 50.000 0.00 0.00 0.00 1.40
2242 2324 1.774254 CCTAGCCACACCCATCCATAA 59.226 52.381 0.00 0.00 0.00 1.90
2243 2325 1.345009 ACCTAGCCACACCCATCCATA 60.345 52.381 0.00 0.00 0.00 2.74
2244 2326 0.624500 ACCTAGCCACACCCATCCAT 60.625 55.000 0.00 0.00 0.00 3.41
2245 2327 1.229820 ACCTAGCCACACCCATCCA 60.230 57.895 0.00 0.00 0.00 3.41
2246 2328 0.983378 AGACCTAGCCACACCCATCC 60.983 60.000 0.00 0.00 0.00 3.51
2247 2329 0.466124 GAGACCTAGCCACACCCATC 59.534 60.000 0.00 0.00 0.00 3.51
2248 2330 0.252696 TGAGACCTAGCCACACCCAT 60.253 55.000 0.00 0.00 0.00 4.00
2249 2331 0.904865 CTGAGACCTAGCCACACCCA 60.905 60.000 0.00 0.00 0.00 4.51
2250 2332 0.905337 ACTGAGACCTAGCCACACCC 60.905 60.000 0.00 0.00 0.00 4.61
2251 2333 0.977395 AACTGAGACCTAGCCACACC 59.023 55.000 0.00 0.00 0.00 4.16
2252 2334 1.618837 TCAACTGAGACCTAGCCACAC 59.381 52.381 0.00 0.00 0.00 3.82
2253 2335 1.618837 GTCAACTGAGACCTAGCCACA 59.381 52.381 0.00 0.00 32.36 4.17
2254 2336 1.896465 AGTCAACTGAGACCTAGCCAC 59.104 52.381 0.00 0.00 39.34 5.01
2255 2337 1.895798 CAGTCAACTGAGACCTAGCCA 59.104 52.381 4.05 0.00 46.59 4.75
2256 2338 1.404851 GCAGTCAACTGAGACCTAGCC 60.405 57.143 14.20 0.00 46.59 3.93
2257 2339 1.734047 CGCAGTCAACTGAGACCTAGC 60.734 57.143 14.20 0.00 46.59 3.42
2258 2340 1.135257 CCGCAGTCAACTGAGACCTAG 60.135 57.143 14.20 0.00 46.59 3.02
2259 2341 0.888619 CCGCAGTCAACTGAGACCTA 59.111 55.000 14.20 0.00 46.59 3.08
2260 2342 1.668294 CCGCAGTCAACTGAGACCT 59.332 57.895 14.20 0.00 46.59 3.85
2261 2343 2.029844 GCCGCAGTCAACTGAGACC 61.030 63.158 14.20 2.24 46.59 3.85
2262 2344 1.005630 AGCCGCAGTCAACTGAGAC 60.006 57.895 14.20 3.23 46.59 3.36
2263 2345 1.290324 GAGCCGCAGTCAACTGAGA 59.710 57.895 14.20 0.00 46.59 3.27
2264 2346 0.601046 TTGAGCCGCAGTCAACTGAG 60.601 55.000 14.20 10.40 46.59 3.35
2265 2347 0.601046 CTTGAGCCGCAGTCAACTGA 60.601 55.000 14.20 0.00 46.59 3.41
2266 2348 0.882042 ACTTGAGCCGCAGTCAACTG 60.882 55.000 5.77 5.77 46.40 3.16
2267 2349 0.882042 CACTTGAGCCGCAGTCAACT 60.882 55.000 0.00 0.00 0.00 3.16
2268 2350 0.880278 TCACTTGAGCCGCAGTCAAC 60.880 55.000 0.00 0.00 0.00 3.18
2269 2351 0.880278 GTCACTTGAGCCGCAGTCAA 60.880 55.000 0.00 0.00 0.00 3.18
2270 2352 1.300931 GTCACTTGAGCCGCAGTCA 60.301 57.895 0.00 0.00 0.00 3.41
2271 2353 0.671781 ATGTCACTTGAGCCGCAGTC 60.672 55.000 0.00 0.00 0.00 3.51
2272 2354 0.608130 TATGTCACTTGAGCCGCAGT 59.392 50.000 0.00 0.00 0.00 4.40
2273 2355 1.725641 TTATGTCACTTGAGCCGCAG 58.274 50.000 0.00 0.00 0.00 5.18
2274 2356 2.401583 ATTATGTCACTTGAGCCGCA 57.598 45.000 0.00 0.00 0.00 5.69
2275 2357 7.258441 TCTATATATTATGTCACTTGAGCCGC 58.742 38.462 0.00 0.00 0.00 6.53
2276 2358 9.639601 TTTCTATATATTATGTCACTTGAGCCG 57.360 33.333 0.00 0.00 0.00 5.52
2298 2380 9.990868 ACTAGGGACATAAAACCAATTATTTCT 57.009 29.630 0.00 0.00 0.00 2.52
2301 2383 8.977412 CCAACTAGGGACATAAAACCAATTATT 58.023 33.333 0.00 0.00 0.00 1.40
2302 2384 8.533569 CCAACTAGGGACATAAAACCAATTAT 57.466 34.615 0.00 0.00 0.00 1.28
2303 2385 7.948034 CCAACTAGGGACATAAAACCAATTA 57.052 36.000 0.00 0.00 0.00 1.40
2304 2386 6.850752 CCAACTAGGGACATAAAACCAATT 57.149 37.500 0.00 0.00 0.00 2.32
2327 2409 0.034337 TAAACCTGCCGAGTGTGACC 59.966 55.000 0.00 0.00 0.00 4.02
2331 2413 1.373812 GGGTAAACCTGCCGAGTGT 59.626 57.895 0.00 0.00 35.85 3.55
2348 2430 9.639601 GGGAACAATTATTTTCAGAAACTAAGG 57.360 33.333 10.49 8.14 0.00 2.69
2350 2432 7.810759 GCGGGAACAATTATTTTCAGAAACTAA 59.189 33.333 7.86 7.86 0.00 2.24
2353 2435 5.347635 GGCGGGAACAATTATTTTCAGAAAC 59.652 40.000 0.00 0.00 0.00 2.78
2358 2440 3.165875 TGGGCGGGAACAATTATTTTCA 58.834 40.909 0.00 0.00 0.00 2.69
2359 2441 3.878160 TGGGCGGGAACAATTATTTTC 57.122 42.857 0.00 0.00 0.00 2.29
2364 2446 1.258676 GGTTTGGGCGGGAACAATTA 58.741 50.000 0.00 0.00 0.00 1.40
2365 2447 0.760945 TGGTTTGGGCGGGAACAATT 60.761 50.000 0.00 0.00 0.00 2.32
2366 2448 1.152440 TGGTTTGGGCGGGAACAAT 60.152 52.632 0.00 0.00 0.00 2.71
2368 2450 2.519780 GTGGTTTGGGCGGGAACA 60.520 61.111 0.00 0.00 0.00 3.18
2371 2453 1.830408 CAAAGTGGTTTGGGCGGGA 60.830 57.895 0.00 0.00 39.63 5.14
2372 2454 2.733945 CAAAGTGGTTTGGGCGGG 59.266 61.111 0.00 0.00 39.63 6.13
2374 2456 1.007387 GAGCAAAGTGGTTTGGGCG 60.007 57.895 0.38 0.00 42.99 6.13
2381 2463 4.911514 AAACATAAACGAGCAAAGTGGT 57.088 36.364 0.00 0.00 0.00 4.16
2393 2475 4.210328 CGGTCAAAGGGCAAAAACATAAAC 59.790 41.667 0.00 0.00 0.00 2.01
2416 2499 6.588373 TGAAGTTTTTAAAGTGGCAGTCAAAC 59.412 34.615 0.00 3.63 0.00 2.93
2423 2506 9.606631 ATTTGTTATGAAGTTTTTAAAGTGGCA 57.393 25.926 0.00 0.00 0.00 4.92
2518 2601 6.422701 ACACTTTTGTCATGAATGCAAATGAG 59.577 34.615 20.59 17.01 35.44 2.90
2521 2604 6.017770 CCAACACTTTTGTCATGAATGCAAAT 60.018 34.615 9.90 0.00 35.44 2.32
2525 2608 4.619973 TCCAACACTTTTGTCATGAATGC 58.380 39.130 0.00 0.00 33.55 3.56
2535 2618 7.442364 TGAGATAGAGACTTTCCAACACTTTTG 59.558 37.037 0.00 0.00 0.00 2.44
2560 2643 6.537660 TGCTGAGATCATATGAGTTCAAACTG 59.462 38.462 11.78 6.68 39.88 3.16
2568 2651 6.170846 TGTTCATGCTGAGATCATATGAGT 57.829 37.500 11.78 0.58 33.74 3.41
2627 2710 2.158971 GGTCAATGTTTGCCACCAACTT 60.159 45.455 0.00 0.00 30.23 2.66
2628 2711 1.412343 GGTCAATGTTTGCCACCAACT 59.588 47.619 0.00 0.00 30.23 3.16
2629 2712 1.137872 TGGTCAATGTTTGCCACCAAC 59.862 47.619 0.00 0.00 35.39 3.77
2655 2748 6.912591 CCTTATGAAACTTGACAAACACTCAC 59.087 38.462 0.00 0.00 0.00 3.51
2661 2754 9.394477 GTCATTACCTTATGAAACTTGACAAAC 57.606 33.333 0.00 0.00 36.37 2.93
2662 2755 9.126151 TGTCATTACCTTATGAAACTTGACAAA 57.874 29.630 0.00 0.00 38.29 2.83
2666 2759 8.664798 CGAATGTCATTACCTTATGAAACTTGA 58.335 33.333 0.00 0.00 36.37 3.02
2677 2770 4.906618 ACTTCCACGAATGTCATTACCTT 58.093 39.130 0.00 0.00 0.00 3.50
2680 2773 5.607119 ACAACTTCCACGAATGTCATTAC 57.393 39.130 0.00 0.00 0.00 1.89
2681 2774 5.350365 GCTACAACTTCCACGAATGTCATTA 59.650 40.000 0.00 0.00 0.00 1.90
2686 2779 3.120321 TGCTACAACTTCCACGAATGT 57.880 42.857 0.00 0.00 0.00 2.71
2710 2803 9.598517 TGAAGCATCAGTTTTGTTTCTTATTTT 57.401 25.926 0.00 0.00 35.90 1.82
2711 2804 9.034544 GTGAAGCATCAGTTTTGTTTCTTATTT 57.965 29.630 0.00 0.00 35.90 1.40
2712 2805 8.196771 TGTGAAGCATCAGTTTTGTTTCTTATT 58.803 29.630 0.00 0.00 35.90 1.40
2713 2806 7.715657 TGTGAAGCATCAGTTTTGTTTCTTAT 58.284 30.769 0.00 0.00 35.90 1.73
2714 2807 7.094508 TGTGAAGCATCAGTTTTGTTTCTTA 57.905 32.000 0.00 0.00 35.90 2.10
2718 2811 8.715191 TTTATTGTGAAGCATCAGTTTTGTTT 57.285 26.923 0.00 0.00 35.88 2.83
2785 2878 2.734755 TTAGGGACTGCCATTCATGG 57.265 50.000 0.95 0.95 45.81 3.66
2788 2881 3.010027 TGACATTTAGGGACTGCCATTCA 59.990 43.478 0.00 0.00 41.52 2.57
2794 2887 3.623510 GCTAACTGACATTTAGGGACTGC 59.376 47.826 12.86 0.00 41.52 4.40
2797 2890 5.086104 TGAGCTAACTGACATTTAGGGAC 57.914 43.478 12.86 0.00 0.00 4.46
2803 2896 7.807977 TTCTCTTTTGAGCTAACTGACATTT 57.192 32.000 0.00 0.00 45.83 2.32
2804 2897 7.446625 ACATTCTCTTTTGAGCTAACTGACATT 59.553 33.333 0.00 0.00 45.83 2.71
2805 2898 6.939163 ACATTCTCTTTTGAGCTAACTGACAT 59.061 34.615 0.00 0.00 45.83 3.06
2806 2899 6.291377 ACATTCTCTTTTGAGCTAACTGACA 58.709 36.000 0.00 0.00 45.83 3.58
2807 2900 6.425114 TGACATTCTCTTTTGAGCTAACTGAC 59.575 38.462 0.00 0.00 45.83 3.51
2808 2901 6.524734 TGACATTCTCTTTTGAGCTAACTGA 58.475 36.000 0.00 0.00 45.83 3.41
2809 2902 6.791887 TGACATTCTCTTTTGAGCTAACTG 57.208 37.500 0.00 0.00 45.83 3.16
2810 2903 7.992754 ATTGACATTCTCTTTTGAGCTAACT 57.007 32.000 0.00 0.00 45.83 2.24
2811 2904 9.766277 CTAATTGACATTCTCTTTTGAGCTAAC 57.234 33.333 0.00 0.00 45.83 2.34
2812 2905 8.454106 GCTAATTGACATTCTCTTTTGAGCTAA 58.546 33.333 0.00 0.00 45.83 3.09
2813 2906 7.826252 AGCTAATTGACATTCTCTTTTGAGCTA 59.174 33.333 0.00 0.00 45.83 3.32
2814 2907 6.658391 AGCTAATTGACATTCTCTTTTGAGCT 59.342 34.615 0.00 0.00 45.83 4.09
2815 2908 6.850555 AGCTAATTGACATTCTCTTTTGAGC 58.149 36.000 0.00 0.00 45.83 4.26
2817 2910 8.627208 AAGAGCTAATTGACATTCTCTTTTGA 57.373 30.769 0.00 0.00 33.04 2.69
2821 2914 9.732130 AGTTTAAGAGCTAATTGACATTCTCTT 57.268 29.630 7.36 7.36 37.36 2.85
2822 2915 9.732130 AAGTTTAAGAGCTAATTGACATTCTCT 57.268 29.630 0.00 0.00 28.94 3.10
2849 2942 7.883229 AAACTTTTTCTCTTTCGCTCAAAAA 57.117 28.000 0.00 0.00 0.00 1.94
2850 2943 8.973835 TTAAACTTTTTCTCTTTCGCTCAAAA 57.026 26.923 0.00 0.00 0.00 2.44
2851 2944 7.220108 GCTTAAACTTTTTCTCTTTCGCTCAAA 59.780 33.333 0.00 0.00 0.00 2.69
2852 2945 6.691388 GCTTAAACTTTTTCTCTTTCGCTCAA 59.309 34.615 0.00 0.00 0.00 3.02
2853 2946 6.199393 GCTTAAACTTTTTCTCTTTCGCTCA 58.801 36.000 0.00 0.00 0.00 4.26
2854 2947 5.625721 GGCTTAAACTTTTTCTCTTTCGCTC 59.374 40.000 0.00 0.00 0.00 5.03
2855 2948 5.507482 GGGCTTAAACTTTTTCTCTTTCGCT 60.507 40.000 0.00 0.00 0.00 4.93
2856 2949 4.680110 GGGCTTAAACTTTTTCTCTTTCGC 59.320 41.667 0.00 0.00 0.00 4.70
2857 2950 5.009710 AGGGGCTTAAACTTTTTCTCTTTCG 59.990 40.000 0.00 0.00 0.00 3.46
2858 2951 6.040504 TGAGGGGCTTAAACTTTTTCTCTTTC 59.959 38.462 0.00 0.00 0.00 2.62
2859 2952 5.897250 TGAGGGGCTTAAACTTTTTCTCTTT 59.103 36.000 0.00 0.00 0.00 2.52
2860 2953 5.454966 TGAGGGGCTTAAACTTTTTCTCTT 58.545 37.500 0.00 0.00 0.00 2.85
2861 2954 5.061721 TGAGGGGCTTAAACTTTTTCTCT 57.938 39.130 0.00 0.00 0.00 3.10
2862 2955 5.784578 TTGAGGGGCTTAAACTTTTTCTC 57.215 39.130 0.00 0.00 0.00 2.87
2863 2956 6.553953 TTTTGAGGGGCTTAAACTTTTTCT 57.446 33.333 0.00 0.00 0.00 2.52
2886 2979 4.479156 TTCCTCCACCCCTAACATTTTT 57.521 40.909 0.00 0.00 0.00 1.94
2887 2980 4.157246 GTTTCCTCCACCCCTAACATTTT 58.843 43.478 0.00 0.00 0.00 1.82
2888 2981 3.774734 GTTTCCTCCACCCCTAACATTT 58.225 45.455 0.00 0.00 0.00 2.32
2889 2982 2.290705 CGTTTCCTCCACCCCTAACATT 60.291 50.000 0.00 0.00 0.00 2.71
2890 2983 1.280998 CGTTTCCTCCACCCCTAACAT 59.719 52.381 0.00 0.00 0.00 2.71
2891 2984 0.688487 CGTTTCCTCCACCCCTAACA 59.312 55.000 0.00 0.00 0.00 2.41
2892 2985 0.035725 CCGTTTCCTCCACCCCTAAC 60.036 60.000 0.00 0.00 0.00 2.34
2893 2986 0.474273 ACCGTTTCCTCCACCCCTAA 60.474 55.000 0.00 0.00 0.00 2.69
2894 2987 0.413037 TACCGTTTCCTCCACCCCTA 59.587 55.000 0.00 0.00 0.00 3.53
2895 2988 0.908180 CTACCGTTTCCTCCACCCCT 60.908 60.000 0.00 0.00 0.00 4.79
2896 2989 1.600638 CTACCGTTTCCTCCACCCC 59.399 63.158 0.00 0.00 0.00 4.95
2897 2990 1.078637 GCTACCGTTTCCTCCACCC 60.079 63.158 0.00 0.00 0.00 4.61
2898 2991 0.108281 GAGCTACCGTTTCCTCCACC 60.108 60.000 0.00 0.00 0.00 4.61
2899 2992 0.108281 GGAGCTACCGTTTCCTCCAC 60.108 60.000 0.00 0.00 42.66 4.02
2900 2993 0.252103 AGGAGCTACCGTTTCCTCCA 60.252 55.000 8.11 0.00 44.95 3.86
2901 2994 1.408340 GTAGGAGCTACCGTTTCCTCC 59.592 57.143 0.00 0.00 44.74 4.30
2902 2995 1.408340 GGTAGGAGCTACCGTTTCCTC 59.592 57.143 0.00 0.00 45.49 3.71
2903 2996 1.482954 GGTAGGAGCTACCGTTTCCT 58.517 55.000 0.00 0.00 45.49 3.36
2911 3004 1.237533 GAGCTACCGGTAGGAGCTAC 58.762 60.000 36.37 21.64 44.91 3.58
2912 3005 0.110104 GGAGCTACCGGTAGGAGCTA 59.890 60.000 36.37 7.29 44.91 3.32
2913 3006 1.152715 GGAGCTACCGGTAGGAGCT 60.153 63.158 36.37 31.64 46.37 4.09
2914 3007 0.110104 TAGGAGCTACCGGTAGGAGC 59.890 60.000 36.37 27.84 44.74 4.70
2915 3008 2.820787 CAATAGGAGCTACCGGTAGGAG 59.179 54.545 36.37 19.87 44.74 3.69
2916 3009 2.490351 CCAATAGGAGCTACCGGTAGGA 60.490 54.545 36.37 9.66 44.74 2.94
2917 3010 1.893801 CCAATAGGAGCTACCGGTAGG 59.106 57.143 36.37 21.44 44.74 3.18
2918 3011 2.872732 TCCAATAGGAGCTACCGGTAG 58.127 52.381 33.18 33.18 44.74 3.18
2919 3012 3.317455 TTCCAATAGGAGCTACCGGTA 57.683 47.619 14.95 14.95 46.74 4.02
2920 3013 2.169978 GTTTCCAATAGGAGCTACCGGT 59.830 50.000 13.98 13.98 46.74 5.28
2921 3014 2.802057 CGTTTCCAATAGGAGCTACCGG 60.802 54.545 0.00 0.00 46.74 5.28
2922 3015 2.470821 CGTTTCCAATAGGAGCTACCG 58.529 52.381 0.00 0.00 46.74 4.02
2923 3016 2.169978 ACCGTTTCCAATAGGAGCTACC 59.830 50.000 0.00 0.00 46.74 3.18
2924 3017 3.538634 ACCGTTTCCAATAGGAGCTAC 57.461 47.619 0.00 0.00 46.74 3.58
2925 3018 4.539726 TCTACCGTTTCCAATAGGAGCTA 58.460 43.478 0.00 0.00 46.74 3.32
2926 3019 3.371965 TCTACCGTTTCCAATAGGAGCT 58.628 45.455 0.00 0.00 46.74 4.09
2927 3020 3.814005 TCTACCGTTTCCAATAGGAGC 57.186 47.619 0.00 0.00 46.74 4.70
2928 3021 6.346096 TCAAATCTACCGTTTCCAATAGGAG 58.654 40.000 0.00 0.00 46.74 3.69
2929 3022 6.302535 TCAAATCTACCGTTTCCAATAGGA 57.697 37.500 0.00 0.00 43.93 2.94
2930 3023 6.995511 TTCAAATCTACCGTTTCCAATAGG 57.004 37.500 0.00 0.00 0.00 2.57
2931 3024 7.812648 TGTTTCAAATCTACCGTTTCCAATAG 58.187 34.615 0.00 0.00 0.00 1.73
2932 3025 7.747155 TGTTTCAAATCTACCGTTTCCAATA 57.253 32.000 0.00 0.00 0.00 1.90
2933 3026 6.642707 TGTTTCAAATCTACCGTTTCCAAT 57.357 33.333 0.00 0.00 0.00 3.16
2934 3027 6.452494 TTGTTTCAAATCTACCGTTTCCAA 57.548 33.333 0.00 0.00 0.00 3.53
2935 3028 6.452494 TTTGTTTCAAATCTACCGTTTCCA 57.548 33.333 0.00 0.00 0.00 3.53
2936 3029 9.634163 ATTATTTGTTTCAAATCTACCGTTTCC 57.366 29.630 10.35 0.00 0.00 3.13
2938 3031 9.974980 ACATTATTTGTTTCAAATCTACCGTTT 57.025 25.926 10.35 0.00 33.74 3.60
2939 3032 9.405587 CACATTATTTGTTTCAAATCTACCGTT 57.594 29.630 10.35 0.00 36.00 4.44
2940 3033 8.788806 TCACATTATTTGTTTCAAATCTACCGT 58.211 29.630 10.35 2.10 36.00 4.83
2941 3034 9.619316 TTCACATTATTTGTTTCAAATCTACCG 57.381 29.630 10.35 1.13 36.00 4.02
2980 3073 9.840427 TTTGTGTTTTTCAAAACTGTTTTTCAA 57.160 22.222 15.41 8.96 46.37 2.69
2981 3074 9.278734 GTTTGTGTTTTTCAAAACTGTTTTTCA 57.721 25.926 15.41 3.37 46.37 2.69
2982 3075 9.278734 TGTTTGTGTTTTTCAAAACTGTTTTTC 57.721 25.926 15.41 4.19 46.37 2.29
2983 3076 9.794685 ATGTTTGTGTTTTTCAAAACTGTTTTT 57.205 22.222 15.41 0.00 46.37 1.94
2984 3077 9.794685 AATGTTTGTGTTTTTCAAAACTGTTTT 57.205 22.222 12.50 12.50 46.37 2.43
2985 3078 9.230932 CAATGTTTGTGTTTTTCAAAACTGTTT 57.769 25.926 14.63 0.00 46.37 2.83
2986 3079 8.401709 ACAATGTTTGTGTTTTTCAAAACTGTT 58.598 25.926 14.63 0.00 46.37 3.16
2987 3080 7.924940 ACAATGTTTGTGTTTTTCAAAACTGT 58.075 26.923 14.63 6.64 46.37 3.55
2988 3081 8.779603 AACAATGTTTGTGTTTTTCAAAACTG 57.220 26.923 14.63 6.13 46.37 3.16
2989 3082 9.230932 CAAACAATGTTTGTGTTTTTCAAAACT 57.769 25.926 25.79 0.00 44.73 2.66
2990 3083 8.475359 CCAAACAATGTTTGTGTTTTTCAAAAC 58.525 29.630 29.73 8.02 44.73 2.43
2991 3084 8.405531 TCCAAACAATGTTTGTGTTTTTCAAAA 58.594 25.926 29.73 6.74 44.73 2.44
2992 3085 7.930217 TCCAAACAATGTTTGTGTTTTTCAAA 58.070 26.923 29.73 7.28 44.73 2.69
2993 3086 7.496529 TCCAAACAATGTTTGTGTTTTTCAA 57.503 28.000 29.73 7.84 44.73 2.69
2994 3087 7.496529 TTCCAAACAATGTTTGTGTTTTTCA 57.503 28.000 29.73 8.39 44.73 2.69
2995 3088 8.962857 AATTCCAAACAATGTTTGTGTTTTTC 57.037 26.923 29.73 0.00 44.73 2.29
2996 3089 9.755804 AAAATTCCAAACAATGTTTGTGTTTTT 57.244 22.222 29.73 25.51 44.73 1.94
2997 3090 9.189723 CAAAATTCCAAACAATGTTTGTGTTTT 57.810 25.926 29.73 26.36 44.73 2.43
2999 3092 8.103948 TCAAAATTCCAAACAATGTTTGTGTT 57.896 26.923 29.73 20.24 44.59 3.32
3000 3093 7.678947 TCAAAATTCCAAACAATGTTTGTGT 57.321 28.000 29.73 16.52 44.59 3.72
3001 3094 8.019669 TGTTCAAAATTCCAAACAATGTTTGTG 58.980 29.630 29.73 21.90 44.59 3.33
3003 3096 9.570488 AATGTTCAAAATTCCAAACAATGTTTG 57.430 25.926 26.80 26.80 35.46 2.93
3004 3097 9.570488 CAATGTTCAAAATTCCAAACAATGTTT 57.430 25.926 5.41 5.41 35.46 2.83
3005 3098 8.738106 ACAATGTTCAAAATTCCAAACAATGTT 58.262 25.926 11.63 0.00 40.83 2.71
3006 3099 8.278729 ACAATGTTCAAAATTCCAAACAATGT 57.721 26.923 11.63 11.63 39.60 2.71
3007 3100 9.570488 AAACAATGTTCAAAATTCCAAACAATG 57.430 25.926 0.00 10.76 38.10 2.82
3008 3101 9.570488 CAAACAATGTTCAAAATTCCAAACAAT 57.430 25.926 0.00 0.00 35.46 2.71
3009 3102 8.786898 TCAAACAATGTTCAAAATTCCAAACAA 58.213 25.926 0.00 0.00 35.46 2.83
3010 3103 8.327941 TCAAACAATGTTCAAAATTCCAAACA 57.672 26.923 0.00 3.01 36.19 2.83
3011 3104 8.663911 TCTCAAACAATGTTCAAAATTCCAAAC 58.336 29.630 0.00 0.00 0.00 2.93
3012 3105 8.783833 TCTCAAACAATGTTCAAAATTCCAAA 57.216 26.923 0.00 0.00 0.00 3.28
3013 3106 8.783833 TTCTCAAACAATGTTCAAAATTCCAA 57.216 26.923 0.00 0.00 0.00 3.53
3014 3107 8.663911 GTTTCTCAAACAATGTTCAAAATTCCA 58.336 29.630 0.00 0.00 41.04 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.