Multiple sequence alignment - TraesCS2A01G382700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G382700 chr2A 100.000 4035 0 0 1 4035 627514546 627510512 0.000000e+00 7452.0
1 TraesCS2A01G382700 chr2A 87.945 871 75 14 952 1806 672368235 672369091 0.000000e+00 1000.0
2 TraesCS2A01G382700 chr2A 84.169 897 86 33 1913 2781 672369088 672369956 0.000000e+00 819.0
3 TraesCS2A01G382700 chr2A 82.979 423 41 18 2735 3149 672369962 672370361 1.780000e-93 353.0
4 TraesCS2A01G382700 chr2A 84.277 159 15 4 514 666 672367843 672367997 3.250000e-31 147.0
5 TraesCS2A01G382700 chr2A 78.680 197 23 11 191 375 672367525 672367714 3.300000e-21 113.0
6 TraesCS2A01G382700 chr2A 91.489 47 3 1 2011 2057 683558317 683558272 3.370000e-06 63.9
7 TraesCS2A01G382700 chr2D 89.303 3029 201 52 512 3476 483633469 483630500 0.000000e+00 3685.0
8 TraesCS2A01G382700 chr2D 83.894 1279 106 56 1914 3151 527492494 527493713 0.000000e+00 1129.0
9 TraesCS2A01G382700 chr2D 86.275 918 99 14 903 1806 527491592 527492496 0.000000e+00 972.0
10 TraesCS2A01G382700 chr2D 83.015 524 48 17 3476 3981 483630204 483629704 1.720000e-118 436.0
11 TraesCS2A01G382700 chr2D 82.214 551 37 32 6 517 483634038 483633510 6.240000e-113 418.0
12 TraesCS2A01G382700 chr2D 88.542 96 5 2 283 375 527490964 527491056 1.190000e-20 111.0
13 TraesCS2A01G382700 chr2D 93.750 48 1 2 2000 2046 296771627 296771581 2.010000e-08 71.3
14 TraesCS2A01G382700 chr2B 89.629 2642 170 50 512 3117 568469582 568467009 0.000000e+00 3265.0
15 TraesCS2A01G382700 chr2B 88.493 869 71 13 952 1806 624768114 624768967 0.000000e+00 1024.0
16 TraesCS2A01G382700 chr2B 85.755 709 64 28 2408 3098 624769474 624770163 0.000000e+00 715.0
17 TraesCS2A01G382700 chr2B 86.179 615 37 17 3326 3918 568458997 568458409 4.430000e-174 621.0
18 TraesCS2A01G382700 chr2B 85.685 489 42 13 1913 2399 624768964 624769426 1.300000e-134 490.0
19 TraesCS2A01G382700 chr2B 86.313 453 21 18 4 450 568470148 568469731 4.750000e-124 455.0
20 TraesCS2A01G382700 chr2B 94.410 161 7 2 3101 3260 568466994 568466835 3.110000e-61 246.0
21 TraesCS2A01G382700 chr2B 85.714 126 10 3 514 639 624767457 624767574 4.230000e-25 126.0
22 TraesCS2A01G382700 chr2B 83.036 112 6 4 271 375 624767034 624767139 5.550000e-14 89.8
23 TraesCS2A01G382700 chr2B 86.420 81 3 4 449 522 568469694 568469615 9.290000e-12 82.4
24 TraesCS2A01G382700 chr2B 91.304 46 3 1 2012 2057 644519076 644519032 1.210000e-05 62.1
25 TraesCS2A01G382700 chr4D 79.605 1672 216 86 998 2579 500718799 500717163 0.000000e+00 1083.0
26 TraesCS2A01G382700 chr4D 90.196 459 43 2 998 1454 502013345 502013803 7.460000e-167 597.0
27 TraesCS2A01G382700 chr4D 75.506 1335 207 77 1747 3035 502014324 502015584 9.860000e-151 544.0
28 TraesCS2A01G382700 chr5A 79.504 1654 230 76 999 2579 683630971 683632588 0.000000e+00 1075.0
29 TraesCS2A01G382700 chr5A 79.444 1654 231 79 999 2579 681899547 681897930 0.000000e+00 1070.0
30 TraesCS2A01G382700 chr5A 76.590 1572 220 95 1527 3035 684647794 684649280 0.000000e+00 728.0
31 TraesCS2A01G382700 chr5A 88.912 487 48 4 998 1484 684646749 684647229 2.680000e-166 595.0
32 TraesCS2A01G382700 chr5A 80.756 291 40 13 2097 2380 12880104 12880385 3.160000e-51 213.0
33 TraesCS2A01G382700 chr5A 93.182 44 1 2 2001 2043 315267737 315267779 3.370000e-06 63.9
34 TraesCS2A01G382700 chr4B 79.465 1646 215 81 998 2589 644681777 644680201 0.000000e+00 1053.0
35 TraesCS2A01G382700 chr4B 91.247 457 40 0 998 1454 646112709 646113165 1.230000e-174 623.0
36 TraesCS2A01G382700 chr4B 77.816 870 135 44 1747 2589 646114026 646114864 6.060000e-133 484.0
37 TraesCS2A01G382700 chr4B 76.897 290 46 13 2747 3035 646114976 646115245 1.170000e-30 145.0
38 TraesCS2A01G382700 chr4B 93.182 44 1 2 2001 2043 472388223 472388265 3.370000e-06 63.9
39 TraesCS2A01G382700 chr6B 93.478 46 1 2 2001 2045 674946762 674946806 2.600000e-07 67.6
40 TraesCS2A01G382700 chrUn 97.368 38 1 0 2010 2047 48473154 48473117 9.360000e-07 65.8
41 TraesCS2A01G382700 chr6D 91.489 47 2 2 2001 2046 419274652 419274697 3.370000e-06 63.9
42 TraesCS2A01G382700 chr5D 93.182 44 1 2 2000 2042 561883344 561883386 3.370000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G382700 chr2A 627510512 627514546 4034 True 7452.000000 7452 100.000000 1 4035 1 chr2A.!!$R1 4034
1 TraesCS2A01G382700 chr2A 672367525 672370361 2836 False 486.400000 1000 83.610000 191 3149 5 chr2A.!!$F1 2958
2 TraesCS2A01G382700 chr2D 483629704 483634038 4334 True 1513.000000 3685 84.844000 6 3981 3 chr2D.!!$R2 3975
3 TraesCS2A01G382700 chr2D 527490964 527493713 2749 False 737.333333 1129 86.237000 283 3151 3 chr2D.!!$F1 2868
4 TraesCS2A01G382700 chr2B 568466835 568470148 3313 True 1012.100000 3265 89.193000 4 3260 4 chr2B.!!$R3 3256
5 TraesCS2A01G382700 chr2B 568458409 568458997 588 True 621.000000 621 86.179000 3326 3918 1 chr2B.!!$R1 592
6 TraesCS2A01G382700 chr2B 624767034 624770163 3129 False 488.960000 1024 85.736600 271 3098 5 chr2B.!!$F1 2827
7 TraesCS2A01G382700 chr4D 500717163 500718799 1636 True 1083.000000 1083 79.605000 998 2579 1 chr4D.!!$R1 1581
8 TraesCS2A01G382700 chr4D 502013345 502015584 2239 False 570.500000 597 82.851000 998 3035 2 chr4D.!!$F1 2037
9 TraesCS2A01G382700 chr5A 683630971 683632588 1617 False 1075.000000 1075 79.504000 999 2579 1 chr5A.!!$F3 1580
10 TraesCS2A01G382700 chr5A 681897930 681899547 1617 True 1070.000000 1070 79.444000 999 2579 1 chr5A.!!$R1 1580
11 TraesCS2A01G382700 chr5A 684646749 684649280 2531 False 661.500000 728 82.751000 998 3035 2 chr5A.!!$F4 2037
12 TraesCS2A01G382700 chr4B 644680201 644681777 1576 True 1053.000000 1053 79.465000 998 2589 1 chr4B.!!$R1 1591
13 TraesCS2A01G382700 chr4B 646112709 646115245 2536 False 417.333333 623 81.986667 998 3035 3 chr4B.!!$F2 2037

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.034767 CACATCACCCACAGCTGGAT 60.035 55.0 19.93 7.64 40.55 3.41 F
281 317 0.460284 TCTTCTCTCGCCCGCAATTC 60.460 55.0 0.00 0.00 0.00 2.17 F
930 1682 0.989890 AACAGAACGCTTCGTATCGC 59.010 50.0 0.00 0.00 39.99 4.58 F
1598 3184 1.318576 GACAAGGTTGGTGAGGTTGG 58.681 55.0 0.00 0.00 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1354 2106 0.806868 ATGGCAGCAACGATCTTGTG 59.193 50.000 0.00 5.55 0.0 3.33 R
1705 3585 1.067821 GTCAGGAGAAGATACGCAGGG 59.932 57.143 0.00 0.00 0.0 4.45 R
1924 3961 1.202891 ACAGGAGCGCCTAAACCTTTT 60.203 47.619 9.34 0.00 44.8 2.27 R
3535 6167 0.108186 TCCAGGTTAGTGCAGCGATG 60.108 55.000 0.00 0.00 0.0 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.601477 TGCACATCACCCACAGCTG 60.601 57.895 13.48 13.48 0.00 4.24
19 20 2.338015 GCACATCACCCACAGCTGG 61.338 63.158 19.93 6.95 37.29 4.85
20 21 1.376086 CACATCACCCACAGCTGGA 59.624 57.895 19.93 5.28 40.55 3.86
21 22 0.034767 CACATCACCCACAGCTGGAT 60.035 55.000 19.93 7.64 40.55 3.41
113 114 0.951040 CAACGAGTGGTCAAGAGGCC 60.951 60.000 0.00 0.00 0.00 5.19
160 185 0.682855 CGTCCAGCTCCTCTTCCTCT 60.683 60.000 0.00 0.00 0.00 3.69
277 313 4.135153 GCTCTTCTCTCGCCCGCA 62.135 66.667 0.00 0.00 0.00 5.69
279 315 1.142748 CTCTTCTCTCGCCCGCAAT 59.857 57.895 0.00 0.00 0.00 3.56
280 316 0.460987 CTCTTCTCTCGCCCGCAATT 60.461 55.000 0.00 0.00 0.00 2.32
281 317 0.460284 TCTTCTCTCGCCCGCAATTC 60.460 55.000 0.00 0.00 0.00 2.17
286 322 1.450312 CTCGCCCGCAATTCTTCCT 60.450 57.895 0.00 0.00 0.00 3.36
315 362 2.735772 GCTCGGGCTCCATCTCCAA 61.736 63.158 0.00 0.00 35.22 3.53
331 378 2.436646 AAGGATTCTGGTGCGCCG 60.437 61.111 12.58 6.81 37.67 6.46
362 410 2.158173 AGATCCCCCTCTTCATCCTCTC 60.158 54.545 0.00 0.00 0.00 3.20
392 443 8.495148 CCAAGTTTTATTCACTGTTTTATTGCC 58.505 33.333 0.00 0.00 0.00 4.52
474 567 5.593010 AGGAGTAGACGATTGCTAAACATC 58.407 41.667 0.00 0.00 0.00 3.06
475 568 5.361285 AGGAGTAGACGATTGCTAAACATCT 59.639 40.000 0.00 0.00 0.00 2.90
476 569 5.460419 GGAGTAGACGATTGCTAAACATCTG 59.540 44.000 0.00 0.00 0.00 2.90
477 570 5.967088 AGTAGACGATTGCTAAACATCTGT 58.033 37.500 0.00 0.00 0.00 3.41
654 1273 3.728076 TGGACGGATAGAGTTGTATGC 57.272 47.619 0.00 0.00 0.00 3.14
666 1293 1.678101 GTTGTATGCATCCTTCCTGGC 59.322 52.381 0.19 0.00 35.26 4.85
668 1295 2.407562 TGTATGCATCCTTCCTGGCTA 58.592 47.619 0.19 0.00 35.26 3.93
814 1476 3.000727 CCGTGTGGGAGTTGATTAGTTC 58.999 50.000 0.00 0.00 38.47 3.01
824 1567 4.392940 AGTTGATTAGTTCACAGCTTGCT 58.607 39.130 0.00 0.00 32.84 3.91
826 1569 5.409826 AGTTGATTAGTTCACAGCTTGCTAC 59.590 40.000 0.00 0.00 32.84 3.58
872 1615 7.578169 TTTTGTTTTGTTACCGAACGAAAAT 57.422 28.000 5.09 0.00 46.05 1.82
874 1617 6.556146 TGTTTTGTTACCGAACGAAAATTG 57.444 33.333 5.09 0.00 46.05 2.32
875 1618 5.004535 TGTTTTGTTACCGAACGAAAATTGC 59.995 36.000 5.09 0.00 46.05 3.56
876 1619 3.965292 TGTTACCGAACGAAAATTGCA 57.035 38.095 0.00 0.00 38.51 4.08
877 1620 3.619729 TGTTACCGAACGAAAATTGCAC 58.380 40.909 0.00 0.00 38.51 4.57
930 1682 0.989890 AACAGAACGCTTCGTATCGC 59.010 50.000 0.00 0.00 39.99 4.58
940 1692 3.607310 CGCTTCGTATCGCTCATTCTAGT 60.607 47.826 0.00 0.00 0.00 2.57
1275 2027 3.782523 ACAACTCCCACATCCACATCTAT 59.217 43.478 0.00 0.00 0.00 1.98
1354 2106 1.819632 GACGGCACCATGGACATCC 60.820 63.158 21.47 12.02 0.00 3.51
1454 2215 3.307379 ACGGAAAGTGAGTTGCTCC 57.693 52.632 0.00 0.00 0.00 4.70
1499 2382 8.900781 GTTACTGATCAGAATGGTACTGTACTA 58.099 37.037 29.27 11.94 36.16 1.82
1598 3184 1.318576 GACAAGGTTGGTGAGGTTGG 58.681 55.000 0.00 0.00 0.00 3.77
1667 3253 2.790387 CGCTTCCGTGGTAAGTAGTAC 58.210 52.381 0.00 0.00 0.00 2.73
1668 3254 2.162208 CGCTTCCGTGGTAAGTAGTACA 59.838 50.000 2.52 0.00 34.01 2.90
1670 3256 3.767278 CTTCCGTGGTAAGTAGTACAGC 58.233 50.000 2.52 0.00 34.01 4.40
1671 3257 2.794103 TCCGTGGTAAGTAGTACAGCA 58.206 47.619 2.52 0.00 34.01 4.41
1705 3585 2.190981 CCGGCATGACTAAGTACGAAC 58.809 52.381 0.00 0.00 0.00 3.95
1707 3592 2.547826 GGCATGACTAAGTACGAACCC 58.452 52.381 0.00 0.00 0.00 4.11
1735 3630 6.540189 CGTATCTTCTCCTGACATTTTCCATT 59.460 38.462 0.00 0.00 0.00 3.16
1736 3631 6.770746 ATCTTCTCCTGACATTTTCCATTG 57.229 37.500 0.00 0.00 0.00 2.82
1807 3707 3.325870 CTGCTGATTCAGTTTCGGTACA 58.674 45.455 14.90 1.58 33.43 2.90
1809 3709 3.932710 TGCTGATTCAGTTTCGGTACATC 59.067 43.478 14.90 0.00 33.43 3.06
1820 3720 5.473504 AGTTTCGGTACATCTCAATTTGCTT 59.526 36.000 0.00 0.00 0.00 3.91
1822 3722 4.323417 TCGGTACATCTCAATTTGCTTGT 58.677 39.130 0.00 0.00 36.20 3.16
1824 3724 4.853196 CGGTACATCTCAATTTGCTTGTTG 59.147 41.667 0.00 0.00 36.20 3.33
1825 3725 4.622740 GGTACATCTCAATTTGCTTGTTGC 59.377 41.667 0.00 0.00 43.25 4.17
1845 3745 2.352225 GCAACGTTGGATTATGCAACCA 60.352 45.455 28.33 0.00 44.39 3.67
1853 3753 3.700539 TGGATTATGCAACCAACATGAGG 59.299 43.478 0.00 3.24 0.00 3.86
1856 3756 5.769662 GGATTATGCAACCAACATGAGGATA 59.230 40.000 14.40 1.43 0.00 2.59
1864 3764 3.976654 ACCAACATGAGGATAGGCTACAT 59.023 43.478 14.40 0.00 0.00 2.29
1869 3769 7.120285 CCAACATGAGGATAGGCTACATTAATG 59.880 40.741 14.01 14.01 0.00 1.90
1871 3771 7.749666 ACATGAGGATAGGCTACATTAATGTT 58.250 34.615 25.31 10.70 41.97 2.71
1887 3787 1.948104 TGTTGGCTGTGTGACTGTAC 58.052 50.000 0.00 0.00 0.00 2.90
1890 3790 3.133183 TGTTGGCTGTGTGACTGTACTTA 59.867 43.478 0.00 0.00 0.00 2.24
1897 3797 5.119279 GCTGTGTGACTGTACTTATCTGTTG 59.881 44.000 0.00 0.00 0.00 3.33
1904 3804 5.152097 ACTGTACTTATCTGTTGAACGTCG 58.848 41.667 0.00 0.00 0.00 5.12
1907 3807 5.626543 TGTACTTATCTGTTGAACGTCGAAC 59.373 40.000 0.00 0.00 0.00 3.95
1969 4006 5.180492 TGGATCAGTTATTGTTGGTTCGAAC 59.820 40.000 20.14 20.14 0.00 3.95
1992 4029 3.512680 CCTTCATAGACAAGGTGACGAC 58.487 50.000 0.00 0.00 36.40 4.34
2000 4046 3.194968 AGACAAGGTGACGACGGATATTT 59.805 43.478 0.00 0.00 0.00 1.40
2008 4055 4.565564 GTGACGACGGATATTTTGCTACTT 59.434 41.667 0.00 0.00 0.00 2.24
2024 4071 5.659048 GCTACTTAGCTGCGTCAATTAAT 57.341 39.130 0.00 0.00 45.62 1.40
2025 4072 6.049263 GCTACTTAGCTGCGTCAATTAATT 57.951 37.500 0.00 0.00 45.62 1.40
2026 4073 6.487103 GCTACTTAGCTGCGTCAATTAATTT 58.513 36.000 0.00 0.00 45.62 1.82
2027 4074 6.412072 GCTACTTAGCTGCGTCAATTAATTTG 59.588 38.462 0.00 0.00 45.62 2.32
2029 4076 5.414454 ACTTAGCTGCGTCAATTAATTTGGA 59.586 36.000 0.00 0.00 35.92 3.53
2031 4078 4.925068 AGCTGCGTCAATTAATTTGGATC 58.075 39.130 0.00 0.00 35.92 3.36
2032 4079 3.725740 GCTGCGTCAATTAATTTGGATCG 59.274 43.478 0.00 2.97 35.92 3.69
2033 4080 4.282068 CTGCGTCAATTAATTTGGATCGG 58.718 43.478 0.00 0.00 35.92 4.18
2034 4081 3.942115 TGCGTCAATTAATTTGGATCGGA 59.058 39.130 0.00 0.60 35.92 4.55
2035 4082 4.035091 TGCGTCAATTAATTTGGATCGGAG 59.965 41.667 0.00 0.00 35.92 4.63
2036 4083 4.554723 GCGTCAATTAATTTGGATCGGAGG 60.555 45.833 0.00 0.00 35.92 4.30
2037 4084 4.024048 CGTCAATTAATTTGGATCGGAGGG 60.024 45.833 0.00 0.00 35.92 4.30
2038 4085 5.130350 GTCAATTAATTTGGATCGGAGGGA 58.870 41.667 0.00 0.00 35.92 4.20
2039 4086 5.239525 GTCAATTAATTTGGATCGGAGGGAG 59.760 44.000 0.00 0.00 35.92 4.30
2040 4087 5.104109 TCAATTAATTTGGATCGGAGGGAGT 60.104 40.000 0.00 0.00 35.92 3.85
2041 4088 6.100569 TCAATTAATTTGGATCGGAGGGAGTA 59.899 38.462 0.00 0.00 35.92 2.59
2042 4089 3.840124 AATTTGGATCGGAGGGAGTAC 57.160 47.619 0.00 0.00 0.00 2.73
2043 4090 2.544844 TTTGGATCGGAGGGAGTACT 57.455 50.000 0.00 0.00 0.00 2.73
2044 4091 3.675348 TTTGGATCGGAGGGAGTACTA 57.325 47.619 0.00 0.00 0.00 1.82
2045 4092 3.675348 TTGGATCGGAGGGAGTACTAA 57.325 47.619 0.00 0.00 0.00 2.24
2069 4120 7.659652 AGCTTAAGAGAACATGTAACTGAAC 57.340 36.000 6.67 0.00 0.00 3.18
2157 4222 0.463204 TCTCTGTGCTGCTGCCTATC 59.537 55.000 13.47 2.16 38.71 2.08
2224 4289 2.628178 AGGCCAAAGTTTTAGCAGGTTC 59.372 45.455 5.01 0.00 0.00 3.62
2228 4293 4.503123 GCCAAAGTTTTAGCAGGTTCCATT 60.503 41.667 3.08 0.00 0.00 3.16
2272 4343 8.507470 TTCACAAATCTTCTATCGATATCACG 57.493 34.615 5.40 0.00 0.00 4.35
2296 4380 6.575162 AAGTCATACAACCCTGAATTTGTC 57.425 37.500 0.00 0.00 37.19 3.18
2371 4457 3.402628 TTAGCTTCAGTGGAGACCAAC 57.597 47.619 1.33 0.00 34.18 3.77
2613 4768 6.043411 CACTCCTTAGTAGTATTGTCAAGCC 58.957 44.000 0.00 0.00 33.48 4.35
2630 4785 2.053244 AGCCCAGCTGCTCAGTATAAT 58.947 47.619 8.66 0.00 36.75 1.28
2631 4786 3.242867 AGCCCAGCTGCTCAGTATAATA 58.757 45.455 8.66 0.00 36.75 0.98
2632 4787 3.648067 AGCCCAGCTGCTCAGTATAATAA 59.352 43.478 8.66 0.00 36.75 1.40
2641 4798 6.128336 GCTGCTCAGTATAATAAGCATCCTTG 60.128 42.308 0.00 0.00 43.30 3.61
2665 4835 4.974399 GCCTGTATTGGCCTCTAACTAAT 58.026 43.478 3.32 0.00 46.82 1.73
2694 4876 6.807230 TCAGACTGTATCTAAAAGAAACTCGC 59.193 38.462 1.59 0.00 35.15 5.03
2727 4913 4.937201 ACGGAGTATGATGTATGCTTGA 57.063 40.909 0.00 0.00 41.94 3.02
2728 4914 5.474578 ACGGAGTATGATGTATGCTTGAT 57.525 39.130 0.00 0.00 41.94 2.57
2729 4915 6.590234 ACGGAGTATGATGTATGCTTGATA 57.410 37.500 0.00 0.00 41.94 2.15
2816 5072 3.312421 ACCAAATTTCAGACAGTGACGTG 59.688 43.478 0.00 0.00 33.71 4.49
2853 5109 3.472652 TGCATCGAGGTACAAAAGTGTT 58.527 40.909 0.00 0.00 39.30 3.32
2854 5110 4.633175 TGCATCGAGGTACAAAAGTGTTA 58.367 39.130 0.00 0.00 39.30 2.41
2855 5111 5.242434 TGCATCGAGGTACAAAAGTGTTAT 58.758 37.500 0.00 0.00 39.30 1.89
2856 5112 5.703592 TGCATCGAGGTACAAAAGTGTTATT 59.296 36.000 0.00 0.00 39.30 1.40
2857 5113 6.874664 TGCATCGAGGTACAAAAGTGTTATTA 59.125 34.615 0.00 0.00 39.30 0.98
2858 5114 7.148540 TGCATCGAGGTACAAAAGTGTTATTAC 60.149 37.037 0.00 0.00 39.30 1.89
2902 5161 1.337167 TGTCACCGATGCTCTCTGTTG 60.337 52.381 0.00 0.00 0.00 3.33
3019 5292 0.233848 CAAACGGCACTACCACGAAC 59.766 55.000 0.00 0.00 39.03 3.95
3056 5341 1.990060 ACGGCCTATGGAGTGCAGT 60.990 57.895 0.00 0.00 0.00 4.40
3057 5342 1.227380 CGGCCTATGGAGTGCAGTC 60.227 63.158 13.44 13.44 0.00 3.51
3058 5343 1.907739 GGCCTATGGAGTGCAGTCA 59.092 57.895 22.68 9.66 0.00 3.41
3059 5344 0.179062 GGCCTATGGAGTGCAGTCAG 60.179 60.000 22.68 11.54 0.00 3.51
3061 5346 1.741732 GCCTATGGAGTGCAGTCAGTG 60.742 57.143 22.68 9.44 0.00 3.66
3232 5553 2.592861 GCCGGCCCATCATCACTC 60.593 66.667 18.11 0.00 0.00 3.51
3239 5560 2.092968 GGCCCATCATCACTCAAGTGTA 60.093 50.000 9.82 0.00 45.76 2.90
3251 5573 6.746120 TCACTCAAGTGTACTCTACCTTTTC 58.254 40.000 9.82 0.00 45.76 2.29
3260 5582 3.756117 ACTCTACCTTTTCCCAGCAAAG 58.244 45.455 0.00 0.00 0.00 2.77
3262 5584 4.141251 ACTCTACCTTTTCCCAGCAAAGAA 60.141 41.667 0.00 0.00 33.69 2.52
3264 5586 5.205056 TCTACCTTTTCCCAGCAAAGAAAA 58.795 37.500 7.34 7.34 39.12 2.29
3265 5587 4.835284 ACCTTTTCCCAGCAAAGAAAAA 57.165 36.364 8.51 0.00 40.44 1.94
3376 5705 5.183014 TGTGACTAGTACTGTTGACTGTG 57.817 43.478 5.39 0.00 0.00 3.66
3386 5715 0.107831 GTTGACTGTGCCTGTACCCA 59.892 55.000 0.00 0.00 0.00 4.51
3486 6117 3.496131 CGCCGTTGATTGGGGACG 61.496 66.667 0.00 0.00 41.69 4.79
3535 6167 1.270971 TATCGTTTCCGCAAGTACGC 58.729 50.000 0.00 0.00 35.58 4.42
3538 6170 0.247145 CGTTTCCGCAAGTACGCATC 60.247 55.000 0.00 0.00 0.00 3.91
3592 6229 3.711541 CTACTGTGGCGTACGGGGC 62.712 68.421 18.39 2.06 40.13 5.80
3727 6381 1.226888 GCCACCACGAGACGGATAC 60.227 63.158 0.00 0.00 0.00 2.24
3748 6402 4.024545 GTCCGGGCCGAGGGAAAA 62.025 66.667 30.79 0.00 33.27 2.29
3789 6443 2.026879 GTCTCGATCAGCCGCTCC 59.973 66.667 0.00 0.00 0.00 4.70
3790 6444 3.586961 TCTCGATCAGCCGCTCCG 61.587 66.667 0.00 0.00 0.00 4.63
3902 6565 2.026734 CACGATCTCGCTGCCGAT 59.973 61.111 0.00 0.88 43.47 4.18
3992 6655 4.524318 CGCCGCCGTGGGAATAGT 62.524 66.667 0.00 0.00 38.63 2.12
3993 6656 2.588034 GCCGCCGTGGGAATAGTC 60.588 66.667 0.00 0.00 38.63 2.59
3994 6657 2.279252 CCGCCGTGGGAATAGTCG 60.279 66.667 0.00 0.00 0.00 4.18
3995 6658 2.960129 CGCCGTGGGAATAGTCGC 60.960 66.667 0.00 0.00 37.23 5.19
3996 6659 2.588034 GCCGTGGGAATAGTCGCC 60.588 66.667 4.70 0.00 35.87 5.54
3997 6660 2.279252 CCGTGGGAATAGTCGCCG 60.279 66.667 4.70 7.75 35.87 6.46
3998 6661 2.960129 CGTGGGAATAGTCGCCGC 60.960 66.667 4.70 3.36 35.87 6.53
3999 6662 2.185867 GTGGGAATAGTCGCCGCA 59.814 61.111 4.70 0.00 35.87 5.69
4000 6663 1.227556 GTGGGAATAGTCGCCGCAT 60.228 57.895 4.70 0.00 35.87 4.73
4001 6664 1.227527 TGGGAATAGTCGCCGCATG 60.228 57.895 4.70 0.00 35.87 4.06
4002 6665 1.961277 GGGAATAGTCGCCGCATGG 60.961 63.158 0.00 0.00 38.77 3.66
4003 6666 1.961277 GGAATAGTCGCCGCATGGG 60.961 63.158 2.06 2.06 39.58 4.00
4012 6675 4.431131 CCGCATGGGCCAGGTTCT 62.431 66.667 20.60 0.00 36.38 3.01
4013 6676 3.136123 CGCATGGGCCAGGTTCTG 61.136 66.667 20.60 9.97 36.38 3.02
4014 6677 2.036256 GCATGGGCCAGGTTCTGT 59.964 61.111 20.60 0.00 0.00 3.41
4015 6678 1.607467 GCATGGGCCAGGTTCTGTT 60.607 57.895 20.60 0.00 0.00 3.16
4016 6679 1.187567 GCATGGGCCAGGTTCTGTTT 61.188 55.000 20.60 0.00 0.00 2.83
4017 6680 1.341080 CATGGGCCAGGTTCTGTTTT 58.659 50.000 13.78 0.00 0.00 2.43
4018 6681 1.273327 CATGGGCCAGGTTCTGTTTTC 59.727 52.381 13.78 0.00 0.00 2.29
4019 6682 0.555769 TGGGCCAGGTTCTGTTTTCT 59.444 50.000 0.00 0.00 0.00 2.52
4020 6683 0.961753 GGGCCAGGTTCTGTTTTCTG 59.038 55.000 4.39 0.00 0.00 3.02
4021 6684 0.315251 GGCCAGGTTCTGTTTTCTGC 59.685 55.000 0.00 0.00 0.00 4.26
4022 6685 0.040067 GCCAGGTTCTGTTTTCTGCG 60.040 55.000 0.00 0.00 0.00 5.18
4023 6686 0.040067 CCAGGTTCTGTTTTCTGCGC 60.040 55.000 0.00 0.00 0.00 6.09
4024 6687 0.947244 CAGGTTCTGTTTTCTGCGCT 59.053 50.000 9.73 0.00 0.00 5.92
4025 6688 1.334869 CAGGTTCTGTTTTCTGCGCTT 59.665 47.619 9.73 0.00 0.00 4.68
4026 6689 2.548057 CAGGTTCTGTTTTCTGCGCTTA 59.452 45.455 9.73 0.00 0.00 3.09
4027 6690 3.189287 CAGGTTCTGTTTTCTGCGCTTAT 59.811 43.478 9.73 0.00 0.00 1.73
4028 6691 3.189287 AGGTTCTGTTTTCTGCGCTTATG 59.811 43.478 9.73 0.00 0.00 1.90
4029 6692 3.058224 GGTTCTGTTTTCTGCGCTTATGT 60.058 43.478 9.73 0.00 0.00 2.29
4030 6693 4.151798 GTTCTGTTTTCTGCGCTTATGTC 58.848 43.478 9.73 0.00 0.00 3.06
4031 6694 3.398406 TCTGTTTTCTGCGCTTATGTCA 58.602 40.909 9.73 0.76 0.00 3.58
4032 6695 3.433274 TCTGTTTTCTGCGCTTATGTCAG 59.567 43.478 9.73 10.95 0.00 3.51
4033 6696 3.398406 TGTTTTCTGCGCTTATGTCAGA 58.602 40.909 9.73 0.00 35.30 3.27
4034 6697 4.002982 TGTTTTCTGCGCTTATGTCAGAT 58.997 39.130 9.73 0.00 36.81 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.601477 CAGCTGTGGGTGATGTGCA 60.601 57.895 5.25 0.00 42.91 4.57
2 3 0.034767 ATCCAGCTGTGGGTGATGTG 60.035 55.000 13.81 0.00 45.11 3.21
18 19 1.072159 CGCCTCCTTCCATCCATCC 59.928 63.158 0.00 0.00 0.00 3.51
19 20 1.072159 CCGCCTCCTTCCATCCATC 59.928 63.158 0.00 0.00 0.00 3.51
20 21 3.125376 GCCGCCTCCTTCCATCCAT 62.125 63.158 0.00 0.00 0.00 3.41
21 22 3.797353 GCCGCCTCCTTCCATCCA 61.797 66.667 0.00 0.00 0.00 3.41
133 134 2.279120 GAGCTGGACGAGATGCCG 60.279 66.667 0.00 0.00 0.00 5.69
137 138 1.398692 GAAGAGGAGCTGGACGAGAT 58.601 55.000 0.00 0.00 0.00 2.75
175 200 0.956633 TATACATGACGACGAGGGCC 59.043 55.000 0.00 0.00 0.00 5.80
176 201 2.787601 TTATACATGACGACGAGGGC 57.212 50.000 0.00 0.00 0.00 5.19
277 313 2.821991 CGAGGCGGATAGGAAGAATT 57.178 50.000 0.00 0.00 0.00 2.17
331 378 0.985490 AGGGGGATCTGAGGAACTGC 60.985 60.000 0.00 0.00 41.55 4.40
390 441 0.383491 CGCGTTCATCATCAATCGGC 60.383 55.000 0.00 0.00 0.00 5.54
392 443 0.715959 CGCGCGTTCATCATCAATCG 60.716 55.000 24.19 0.00 0.00 3.34
474 567 3.918258 TCGTCGTTCAGAAACAAACAG 57.082 42.857 0.00 0.00 34.93 3.16
475 568 4.209703 GGTATCGTCGTTCAGAAACAAACA 59.790 41.667 0.00 0.00 34.93 2.83
476 569 4.376717 GGGTATCGTCGTTCAGAAACAAAC 60.377 45.833 0.00 0.00 34.93 2.93
477 570 3.742369 GGGTATCGTCGTTCAGAAACAAA 59.258 43.478 0.00 0.00 34.93 2.83
654 1273 1.134280 CAGGTGTAGCCAGGAAGGATG 60.134 57.143 0.00 0.00 41.22 3.51
666 1293 1.068333 GCCAAATGTGTGCAGGTGTAG 60.068 52.381 0.00 0.00 0.00 2.74
668 1295 1.741525 GCCAAATGTGTGCAGGTGT 59.258 52.632 0.00 0.00 0.00 4.16
814 1476 4.430137 AATCAACATGTAGCAAGCTGTG 57.570 40.909 0.00 3.88 0.00 3.66
824 1567 8.618702 AAAATTTCATGCCAAATCAACATGTA 57.381 26.923 0.00 0.00 41.51 2.29
930 1682 2.683867 ACGACTCGGGAACTAGAATGAG 59.316 50.000 2.98 0.00 0.00 2.90
940 1692 0.729116 GATCACGTACGACTCGGGAA 59.271 55.000 24.41 0.00 43.79 3.97
1275 2027 2.367202 GGAGATGCCCCCGTTCTCA 61.367 63.158 0.00 0.00 38.08 3.27
1354 2106 0.806868 ATGGCAGCAACGATCTTGTG 59.193 50.000 0.00 5.55 0.00 3.33
1499 2382 5.367945 TGAACCAGAGTCAGGTAAAAACT 57.632 39.130 7.76 0.00 38.76 2.66
1667 3253 2.159393 CCGGTTTATTGACCACATGCTG 60.159 50.000 0.00 0.00 39.78 4.41
1668 3254 2.091541 CCGGTTTATTGACCACATGCT 58.908 47.619 0.00 0.00 39.78 3.79
1670 3256 1.815613 TGCCGGTTTATTGACCACATG 59.184 47.619 1.90 0.00 39.78 3.21
1671 3257 2.208132 TGCCGGTTTATTGACCACAT 57.792 45.000 1.90 0.00 39.78 3.21
1676 3467 4.634443 ACTTAGTCATGCCGGTTTATTGAC 59.366 41.667 1.90 9.52 37.54 3.18
1705 3585 1.067821 GTCAGGAGAAGATACGCAGGG 59.932 57.143 0.00 0.00 0.00 4.45
1707 3592 3.724508 ATGTCAGGAGAAGATACGCAG 57.275 47.619 0.00 0.00 0.00 5.18
1735 3630 2.335011 CCTGACACGACGACAGCA 59.665 61.111 0.00 0.00 36.25 4.41
1736 3631 3.106407 GCCTGACACGACGACAGC 61.106 66.667 0.00 1.89 36.25 4.40
1820 3720 2.294512 TGCATAATCCAACGTTGCAACA 59.705 40.909 28.01 9.66 40.11 3.33
1824 3724 2.258755 GGTTGCATAATCCAACGTTGC 58.741 47.619 22.93 10.98 42.58 4.17
1825 3725 3.567576 TGGTTGCATAATCCAACGTTG 57.432 42.857 21.47 21.47 42.58 4.10
1830 3730 4.160065 CCTCATGTTGGTTGCATAATCCAA 59.840 41.667 8.42 8.42 38.65 3.53
1832 3732 3.953612 TCCTCATGTTGGTTGCATAATCC 59.046 43.478 0.00 0.00 0.00 3.01
1845 3745 7.749666 ACATTAATGTAGCCTATCCTCATGTT 58.250 34.615 19.51 0.00 39.68 2.71
1850 3750 5.412904 GCCAACATTAATGTAGCCTATCCTC 59.587 44.000 21.07 0.00 40.80 3.71
1853 3753 5.765182 ACAGCCAACATTAATGTAGCCTATC 59.235 40.000 27.40 12.97 40.80 2.08
1856 3756 3.696051 CACAGCCAACATTAATGTAGCCT 59.304 43.478 27.40 18.38 40.80 4.58
1864 3764 3.550820 ACAGTCACACAGCCAACATTAA 58.449 40.909 0.00 0.00 0.00 1.40
1869 3769 2.240493 AGTACAGTCACACAGCCAAC 57.760 50.000 0.00 0.00 0.00 3.77
1871 3771 3.832490 AGATAAGTACAGTCACACAGCCA 59.168 43.478 0.00 0.00 0.00 4.75
1874 3774 6.447162 TCAACAGATAAGTACAGTCACACAG 58.553 40.000 0.00 0.00 0.00 3.66
1887 3787 4.433022 GCAGTTCGACGTTCAACAGATAAG 60.433 45.833 11.77 0.00 0.00 1.73
1890 3790 1.792949 GCAGTTCGACGTTCAACAGAT 59.207 47.619 11.77 0.00 0.00 2.90
1897 3797 1.654105 CATACCTGCAGTTCGACGTTC 59.346 52.381 13.81 0.00 0.00 3.95
1924 3961 1.202891 ACAGGAGCGCCTAAACCTTTT 60.203 47.619 9.34 0.00 44.80 2.27
1969 4006 2.271800 GTCACCTTGTCTATGAAGGCG 58.728 52.381 0.00 0.00 43.46 5.52
2008 4055 5.277297 CGATCCAAATTAATTGACGCAGCTA 60.277 40.000 0.39 0.00 41.85 3.32
2011 4058 4.035091 TCCGATCCAAATTAATTGACGCAG 59.965 41.667 0.39 0.00 41.85 5.18
2014 4061 4.024048 CCCTCCGATCCAAATTAATTGACG 60.024 45.833 0.39 4.11 41.85 4.35
2015 4062 5.130350 TCCCTCCGATCCAAATTAATTGAC 58.870 41.667 0.39 0.00 41.85 3.18
2017 4064 5.133221 ACTCCCTCCGATCCAAATTAATTG 58.867 41.667 0.39 0.00 38.84 2.32
2018 4065 5.388599 ACTCCCTCCGATCCAAATTAATT 57.611 39.130 0.00 0.00 0.00 1.40
2019 4066 5.607171 AGTACTCCCTCCGATCCAAATTAAT 59.393 40.000 0.00 0.00 0.00 1.40
2020 4067 4.966805 AGTACTCCCTCCGATCCAAATTAA 59.033 41.667 0.00 0.00 0.00 1.40
2021 4068 4.553678 AGTACTCCCTCCGATCCAAATTA 58.446 43.478 0.00 0.00 0.00 1.40
2022 4069 3.385115 AGTACTCCCTCCGATCCAAATT 58.615 45.455 0.00 0.00 0.00 1.82
2024 4071 2.544844 AGTACTCCCTCCGATCCAAA 57.455 50.000 0.00 0.00 0.00 3.28
2025 4072 3.563223 CTTAGTACTCCCTCCGATCCAA 58.437 50.000 0.00 0.00 0.00 3.53
2026 4073 2.752154 GCTTAGTACTCCCTCCGATCCA 60.752 54.545 0.00 0.00 0.00 3.41
2027 4074 1.887854 GCTTAGTACTCCCTCCGATCC 59.112 57.143 0.00 0.00 0.00 3.36
2029 4076 3.315880 AAGCTTAGTACTCCCTCCGAT 57.684 47.619 0.00 0.00 0.00 4.18
2031 4078 4.205587 TCTTAAGCTTAGTACTCCCTCCG 58.794 47.826 6.24 0.00 0.00 4.63
2032 4079 5.447757 TCTCTTAAGCTTAGTACTCCCTCC 58.552 45.833 6.24 0.00 0.00 4.30
2033 4080 6.377712 TGTTCTCTTAAGCTTAGTACTCCCTC 59.622 42.308 6.24 0.00 0.00 4.30
2034 4081 6.254522 TGTTCTCTTAAGCTTAGTACTCCCT 58.745 40.000 6.24 0.00 0.00 4.20
2035 4082 6.527057 TGTTCTCTTAAGCTTAGTACTCCC 57.473 41.667 6.24 0.00 0.00 4.30
2036 4083 7.548967 ACATGTTCTCTTAAGCTTAGTACTCC 58.451 38.462 6.24 0.00 0.00 3.85
2038 4085 9.857957 GTTACATGTTCTCTTAAGCTTAGTACT 57.142 33.333 2.30 0.00 0.00 2.73
2039 4086 9.857957 AGTTACATGTTCTCTTAAGCTTAGTAC 57.142 33.333 2.30 2.18 0.00 2.73
2040 4087 9.856488 CAGTTACATGTTCTCTTAAGCTTAGTA 57.144 33.333 2.30 0.00 0.00 1.82
2041 4088 8.585881 TCAGTTACATGTTCTCTTAAGCTTAGT 58.414 33.333 2.30 0.71 0.00 2.24
2042 4089 8.988064 TCAGTTACATGTTCTCTTAAGCTTAG 57.012 34.615 2.30 0.00 0.00 2.18
2043 4090 9.204570 GTTCAGTTACATGTTCTCTTAAGCTTA 57.795 33.333 2.30 0.86 0.00 3.09
2044 4091 7.934120 AGTTCAGTTACATGTTCTCTTAAGCTT 59.066 33.333 2.30 3.48 0.00 3.74
2045 4092 7.445945 AGTTCAGTTACATGTTCTCTTAAGCT 58.554 34.615 2.30 0.00 0.00 3.74
2069 4120 9.606631 ATCTTAGCCTGAAAGTATTGTTTAGAG 57.393 33.333 0.00 0.00 0.00 2.43
2224 4289 5.664294 TCCACATGGAAAAGATCAAATGG 57.336 39.130 0.00 0.00 42.18 3.16
2272 4343 6.431234 AGACAAATTCAGGGTTGTATGACTTC 59.569 38.462 0.00 0.00 38.07 3.01
2296 4380 5.242393 ACCATCTGAACAATTGGAAAGACAG 59.758 40.000 10.83 9.28 33.36 3.51
2456 4600 6.128172 GGATCCGCAATATCAAAGAATACCTG 60.128 42.308 0.00 0.00 0.00 4.00
2589 4733 6.043411 GGCTTGACAATACTACTAAGGAGTG 58.957 44.000 0.00 0.00 37.67 3.51
2593 4748 5.353394 TGGGCTTGACAATACTACTAAGG 57.647 43.478 0.00 0.00 0.00 2.69
2596 4751 4.030913 AGCTGGGCTTGACAATACTACTA 58.969 43.478 0.00 0.00 33.89 1.82
2613 4768 4.635223 TGCTTATTATACTGAGCAGCTGG 58.365 43.478 17.12 0.31 39.97 4.85
2630 4785 3.931907 ATACAGGCACAAGGATGCTTA 57.068 42.857 0.00 0.00 45.38 3.09
2631 4786 2.756760 CAATACAGGCACAAGGATGCTT 59.243 45.455 0.00 0.00 45.38 3.91
2632 4787 2.372264 CAATACAGGCACAAGGATGCT 58.628 47.619 0.00 0.00 45.38 3.79
2726 4912 7.875327 TGGAGGGTTAAAAGTTAGCATTATC 57.125 36.000 0.00 0.00 0.00 1.75
2727 4913 8.838649 AATGGAGGGTTAAAAGTTAGCATTAT 57.161 30.769 0.00 0.00 0.00 1.28
2728 4914 8.658840 AAATGGAGGGTTAAAAGTTAGCATTA 57.341 30.769 0.00 0.00 0.00 1.90
2729 4915 7.553504 AAATGGAGGGTTAAAAGTTAGCATT 57.446 32.000 0.00 0.00 0.00 3.56
2816 5072 4.507756 TCGATGCATGTCAAAGTATACTGC 59.492 41.667 2.46 5.14 0.00 4.40
2857 5113 9.388506 CAGAAGTTCAAATGAATCCATAGTAGT 57.611 33.333 5.50 0.00 36.33 2.73
2858 5114 9.388506 ACAGAAGTTCAAATGAATCCATAGTAG 57.611 33.333 5.50 0.00 36.33 2.57
2871 5127 3.189287 GCATCGGTGACAGAAGTTCAAAT 59.811 43.478 0.00 0.00 0.00 2.32
2902 5161 1.653094 CCACACACACACACACACCC 61.653 60.000 0.00 0.00 0.00 4.61
3056 5341 3.181445 ACAAACAAGCTGGATACCACTGA 60.181 43.478 0.00 0.00 0.00 3.41
3057 5342 3.058016 CACAAACAAGCTGGATACCACTG 60.058 47.826 0.00 0.00 0.00 3.66
3058 5343 3.149196 CACAAACAAGCTGGATACCACT 58.851 45.455 0.00 0.00 0.00 4.00
3059 5344 2.228822 CCACAAACAAGCTGGATACCAC 59.771 50.000 0.00 0.00 0.00 4.16
3061 5346 1.202348 GCCACAAACAAGCTGGATACC 59.798 52.381 0.00 0.00 0.00 2.73
3232 5553 5.223449 TGGGAAAAGGTAGAGTACACTTG 57.777 43.478 0.00 0.00 0.00 3.16
3239 5560 3.394606 TCTTTGCTGGGAAAAGGTAGAGT 59.605 43.478 0.00 0.00 35.71 3.24
3321 5646 1.005394 AGACGCCCGGTACAAAGTG 60.005 57.895 0.00 0.00 0.00 3.16
3359 5684 3.005897 ACAGGCACAGTCAACAGTACTAG 59.994 47.826 0.00 0.00 0.00 2.57
3376 5705 3.305314 TGGACGATGGGTACAGGC 58.695 61.111 0.00 0.00 33.39 4.85
3386 5715 1.797211 GCCGTAGCTAGCTGGACGAT 61.797 60.000 31.81 8.42 37.50 3.73
3486 6117 1.076705 GGAAGGCCATGGTTCCTCC 60.077 63.158 21.58 15.03 39.42 4.30
3535 6167 0.108186 TCCAGGTTAGTGCAGCGATG 60.108 55.000 0.00 0.00 0.00 3.84
3538 6170 0.530744 TACTCCAGGTTAGTGCAGCG 59.469 55.000 0.00 0.00 0.00 5.18
3630 6273 3.652000 GGTTTTCCGACGCCGCAA 61.652 61.111 0.00 0.00 0.00 4.85
3673 6316 1.901464 GACGTGGGGGTTGTGCAAT 60.901 57.895 0.00 0.00 0.00 3.56
3680 6323 1.608336 TGATCGAGACGTGGGGGTT 60.608 57.895 0.00 0.00 0.00 4.11
3681 6324 2.036731 TGATCGAGACGTGGGGGT 59.963 61.111 0.00 0.00 0.00 4.95
3682 6325 2.494918 GTGATCGAGACGTGGGGG 59.505 66.667 0.00 0.00 0.00 5.40
3732 6386 4.024545 GTTTTCCCTCGGCCCGGA 62.025 66.667 0.73 1.99 0.00 5.14
3748 6402 4.728102 TTTGATCGCGGCCGTCGT 62.728 61.111 30.84 21.92 41.72 4.34
3791 6445 4.680237 TCCTGTTGCCGTGCCGAG 62.680 66.667 0.00 0.00 0.00 4.63
3792 6446 4.243008 TTCCTGTTGCCGTGCCGA 62.243 61.111 0.00 0.00 0.00 5.54
3793 6447 3.726517 CTTCCTGTTGCCGTGCCG 61.727 66.667 0.00 0.00 0.00 5.69
3818 6481 3.338676 GGATGGATCGTTCGCGCC 61.339 66.667 0.00 0.00 41.05 6.53
3955 6618 4.622456 CACCAAACGCCACGCCAC 62.622 66.667 0.00 0.00 0.00 5.01
3981 6644 2.960129 GCGGCGACTATTCCCACG 60.960 66.667 12.98 0.00 0.00 4.94
3982 6645 1.227556 ATGCGGCGACTATTCCCAC 60.228 57.895 12.98 0.00 0.00 4.61
3983 6646 1.227527 CATGCGGCGACTATTCCCA 60.228 57.895 12.98 0.00 0.00 4.37
3984 6647 1.961277 CCATGCGGCGACTATTCCC 60.961 63.158 12.98 0.00 0.00 3.97
3985 6648 1.961277 CCCATGCGGCGACTATTCC 60.961 63.158 12.98 0.00 0.00 3.01
3986 6649 3.642755 CCCATGCGGCGACTATTC 58.357 61.111 12.98 0.00 0.00 1.75
3995 6658 4.431131 AGAACCTGGCCCATGCGG 62.431 66.667 0.00 0.00 38.85 5.69
3996 6659 3.136123 CAGAACCTGGCCCATGCG 61.136 66.667 0.00 0.00 38.85 4.73
3997 6660 1.187567 AAACAGAACCTGGCCCATGC 61.188 55.000 0.00 0.00 35.51 4.06
3998 6661 1.273327 GAAAACAGAACCTGGCCCATG 59.727 52.381 0.00 0.00 35.51 3.66
3999 6662 1.147817 AGAAAACAGAACCTGGCCCAT 59.852 47.619 0.00 0.00 35.51 4.00
4000 6663 0.555769 AGAAAACAGAACCTGGCCCA 59.444 50.000 0.00 0.00 35.51 5.36
4001 6664 0.961753 CAGAAAACAGAACCTGGCCC 59.038 55.000 0.00 0.00 35.51 5.80
4002 6665 0.315251 GCAGAAAACAGAACCTGGCC 59.685 55.000 0.00 0.00 35.51 5.36
4003 6666 0.040067 CGCAGAAAACAGAACCTGGC 60.040 55.000 0.00 0.00 35.51 4.85
4004 6667 0.040067 GCGCAGAAAACAGAACCTGG 60.040 55.000 0.30 0.00 35.51 4.45
4005 6668 0.947244 AGCGCAGAAAACAGAACCTG 59.053 50.000 11.47 0.00 37.52 4.00
4006 6669 1.680338 AAGCGCAGAAAACAGAACCT 58.320 45.000 11.47 0.00 0.00 3.50
4007 6670 3.058224 ACATAAGCGCAGAAAACAGAACC 60.058 43.478 11.47 0.00 0.00 3.62
4008 6671 4.147219 ACATAAGCGCAGAAAACAGAAC 57.853 40.909 11.47 0.00 0.00 3.01
4009 6672 3.812609 TGACATAAGCGCAGAAAACAGAA 59.187 39.130 11.47 0.00 0.00 3.02
4010 6673 3.398406 TGACATAAGCGCAGAAAACAGA 58.602 40.909 11.47 0.00 0.00 3.41
4011 6674 3.433274 TCTGACATAAGCGCAGAAAACAG 59.567 43.478 11.47 12.32 35.87 3.16
4012 6675 3.398406 TCTGACATAAGCGCAGAAAACA 58.602 40.909 11.47 1.97 35.87 2.83
4013 6676 4.606457 ATCTGACATAAGCGCAGAAAAC 57.394 40.909 11.47 0.00 41.48 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.