Multiple sequence alignment - TraesCS2A01G382400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G382400 chr2A 100.000 3712 0 0 1 3712 625955837 625959548 0.000000e+00 6855.0
1 TraesCS2A01G382400 chr2B 88.717 1808 107 43 1243 3016 568030661 568032405 0.000000e+00 2119.0
2 TraesCS2A01G382400 chr2B 88.025 977 60 30 285 1205 568029685 568030660 0.000000e+00 1103.0
3 TraesCS2A01G382400 chr2B 85.609 271 21 10 1 253 568026491 568026761 6.110000e-68 268.0
4 TraesCS2A01G382400 chr2B 95.238 42 2 0 3609 3650 568033049 568033090 2.390000e-07 67.6
5 TraesCS2A01G382400 chr2D 87.118 1863 110 54 1269 3069 483165374 483167168 0.000000e+00 1991.0
6 TraesCS2A01G382400 chr2D 87.861 865 44 26 361 1180 483164171 483165019 0.000000e+00 959.0
7 TraesCS2A01G382400 chr2D 91.045 268 14 5 1 259 483159254 483159520 1.640000e-93 353.0
8 TraesCS2A01G382400 chr2D 80.332 422 34 20 3323 3712 483167367 483167771 1.310000e-69 274.0
9 TraesCS2A01G382400 chr2D 89.516 124 6 4 3173 3296 483167194 483167310 2.310000e-32 150.0
10 TraesCS2A01G382400 chr2D 86.667 90 12 0 257 346 483163751 483163840 2.360000e-17 100.0
11 TraesCS2A01G382400 chr7A 87.111 225 21 7 1972 2192 489163241 489163461 7.960000e-62 248.0
12 TraesCS2A01G382400 chr7A 83.929 224 32 4 1972 2193 228263005 228262784 1.040000e-50 211.0
13 TraesCS2A01G382400 chr7D 86.667 225 22 7 1972 2192 438368656 438368876 3.700000e-60 243.0
14 TraesCS2A01G382400 chr7D 84.821 224 30 4 1972 2193 215096285 215096064 4.830000e-54 222.0
15 TraesCS2A01G382400 chr7B 86.667 225 22 7 1972 2192 455272015 455271795 3.700000e-60 243.0
16 TraesCS2A01G382400 chr7B 84.821 224 30 4 1972 2193 185061129 185060908 4.830000e-54 222.0
17 TraesCS2A01G382400 chr1A 81.250 224 29 11 1972 2190 343675135 343675350 6.380000e-38 169.0
18 TraesCS2A01G382400 chr3A 100.000 34 0 0 255 288 576688767 576688734 3.090000e-06 63.9
19 TraesCS2A01G382400 chr3D 95.000 40 1 1 250 288 272290715 272290754 1.110000e-05 62.1
20 TraesCS2A01G382400 chr3B 95.000 40 1 1 249 288 159560858 159560820 1.110000e-05 62.1
21 TraesCS2A01G382400 chr3B 97.222 36 1 0 250 285 506972671 506972636 1.110000e-05 62.1
22 TraesCS2A01G382400 chr1D 91.304 46 2 2 252 296 400181491 400181535 1.110000e-05 62.1
23 TraesCS2A01G382400 chr1D 94.737 38 2 0 250 287 252489372 252489335 4.000000e-05 60.2
24 TraesCS2A01G382400 chr1B 97.222 36 1 0 249 284 675373515 675373550 1.110000e-05 62.1
25 TraesCS2A01G382400 chr4A 94.737 38 2 0 250 287 407215238 407215275 4.000000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G382400 chr2A 625955837 625959548 3711 False 6855.0 6855 100.00000 1 3712 1 chr2A.!!$F1 3711
1 TraesCS2A01G382400 chr2B 568026491 568033090 6599 False 889.4 2119 89.39725 1 3650 4 chr2B.!!$F1 3649
2 TraesCS2A01G382400 chr2D 483163751 483167771 4020 False 694.8 1991 86.29880 257 3712 5 chr2D.!!$F2 3455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 271 0.600557 CCTATGCCTCTGCCGTCTAG 59.399 60.0 0.0 0.0 36.33 2.43 F
1214 4510 0.030603 AGTTCATCTCCCTCTCCCCC 60.031 60.0 0.0 0.0 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 4529 0.036388 TCGAAACCAGACTCCATGGC 60.036 55.0 6.96 0.0 41.87 4.40 R
3070 6816 0.037882 TTCTCCTGCAGAAGAGCACG 60.038 55.0 17.39 0.0 40.11 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.074647 AAAGCTTGTACACCCGCC 57.925 55.556 0.00 0.00 0.00 6.13
43 48 3.908951 CGCCGGCGAACACATACG 61.909 66.667 44.86 10.04 42.83 3.06
55 70 4.553101 CATACGCACGAACGCCGC 62.553 66.667 0.00 4.06 43.32 6.53
147 165 2.505982 CCAGGCGAACCCGATCAT 59.494 61.111 0.00 0.00 39.21 2.45
153 171 3.315191 CAGGCGAACCCGATCATTTAATT 59.685 43.478 0.00 0.00 39.21 1.40
155 173 4.401202 AGGCGAACCCGATCATTTAATTTT 59.599 37.500 0.00 0.00 39.21 1.82
159 177 5.067283 CGAACCCGATCATTTAATTTTCCCT 59.933 40.000 0.00 0.00 38.22 4.20
163 181 5.977129 CCCGATCATTTAATTTTCCCTTTCG 59.023 40.000 0.00 0.00 0.00 3.46
175 193 0.623723 CCCTTTCGATTCCTTCCCCA 59.376 55.000 0.00 0.00 0.00 4.96
176 194 1.408822 CCCTTTCGATTCCTTCCCCAG 60.409 57.143 0.00 0.00 0.00 4.45
211 229 2.978010 CCGACCCTGCACCAACAC 60.978 66.667 0.00 0.00 0.00 3.32
221 239 1.271001 TGCACCAACACAGAGATGAGG 60.271 52.381 0.00 0.00 0.00 3.86
223 241 2.934364 GCACCAACACAGAGATGAGGAG 60.934 54.545 0.00 0.00 0.00 3.69
233 251 4.837860 ACAGAGATGAGGAGGATCAATACC 59.162 45.833 0.00 0.00 36.25 2.73
236 254 3.145667 AGATGAGGAGGATCAATACCCCT 59.854 47.826 0.00 0.00 36.25 4.79
237 255 4.361367 AGATGAGGAGGATCAATACCCCTA 59.639 45.833 0.00 0.00 36.25 3.53
238 256 4.785173 TGAGGAGGATCAATACCCCTAT 57.215 45.455 0.00 0.00 36.25 2.57
239 257 4.429505 TGAGGAGGATCAATACCCCTATG 58.570 47.826 0.00 0.00 36.25 2.23
240 258 3.185455 AGGAGGATCAATACCCCTATGC 58.815 50.000 0.00 0.00 36.25 3.14
242 260 3.185455 GAGGATCAATACCCCTATGCCT 58.815 50.000 0.00 0.00 33.17 4.75
243 261 3.185455 AGGATCAATACCCCTATGCCTC 58.815 50.000 0.00 0.00 0.00 4.70
245 263 3.054802 GGATCAATACCCCTATGCCTCTG 60.055 52.174 0.00 0.00 0.00 3.35
246 264 1.699634 TCAATACCCCTATGCCTCTGC 59.300 52.381 0.00 0.00 38.26 4.26
249 267 2.599139 TACCCCTATGCCTCTGCCGT 62.599 60.000 0.00 0.00 36.33 5.68
250 268 2.423446 CCCTATGCCTCTGCCGTC 59.577 66.667 0.00 0.00 36.33 4.79
251 269 2.136878 CCCTATGCCTCTGCCGTCT 61.137 63.158 0.00 0.00 36.33 4.18
252 270 0.827925 CCCTATGCCTCTGCCGTCTA 60.828 60.000 0.00 0.00 36.33 2.59
253 271 0.600557 CCTATGCCTCTGCCGTCTAG 59.399 60.000 0.00 0.00 36.33 2.43
255 273 1.268352 CTATGCCTCTGCCGTCTAGAC 59.732 57.143 13.18 13.18 36.33 2.59
278 296 8.601476 AGACGCTTTTATATTTCTTTACGAAGG 58.399 33.333 0.00 0.00 33.56 3.46
279 297 7.691158 ACGCTTTTATATTTCTTTACGAAGGG 58.309 34.615 0.00 0.00 33.56 3.95
296 3207 5.834204 ACGAAGGGAGTACTATGCTCTTATT 59.166 40.000 0.00 0.00 33.73 1.40
300 3211 5.245075 AGGGAGTACTATGCTCTTATTCTGC 59.755 44.000 0.00 0.00 33.73 4.26
333 3244 7.752695 AGCAGTATTTTTAGACTGAATTTCCG 58.247 34.615 6.22 0.00 44.88 4.30
338 3249 7.718334 ATTTTTAGACTGAATTTCCGGGATT 57.282 32.000 0.00 2.14 0.00 3.01
340 3251 8.638629 TTTTTAGACTGAATTTCCGGGATTAA 57.361 30.769 0.00 0.00 0.00 1.40
357 3275 1.767127 TAACACCGCGTGCACACTTG 61.767 55.000 18.64 9.51 36.98 3.16
380 3607 9.143631 CTTGCTTCTGGTTTAATAATCTTTTGG 57.856 33.333 0.00 0.00 0.00 3.28
414 3644 5.788450 AGAGAAGACGTTGAGAATGAACAT 58.212 37.500 0.00 0.00 28.80 2.71
419 3649 1.202065 CGTTGAGAATGAACATGGCGG 60.202 52.381 0.00 0.00 28.80 6.13
429 3659 2.094286 TGAACATGGCGGGCTTAATTTG 60.094 45.455 2.38 0.00 0.00 2.32
466 3696 2.887568 GAGCGCTCCGTGTCATGG 60.888 66.667 27.22 4.52 0.00 3.66
605 3835 2.435805 TCTTCCACATAAGCAGGCTAGG 59.564 50.000 0.00 0.00 0.00 3.02
625 3855 2.420129 GGTAGCCAAGCTAAGCTAAGCA 60.420 50.000 16.79 0.00 43.07 3.91
626 3856 2.035530 AGCCAAGCTAAGCTAAGCAG 57.964 50.000 8.58 0.57 45.30 4.24
627 3857 2.016096 AGCCAAGCTAAGCTAAGCAGC 61.016 52.381 8.58 0.00 45.30 5.25
666 3921 2.025727 GATACCGGGACAGCGACG 59.974 66.667 6.32 0.00 0.00 5.12
774 4029 0.987294 CCTCCACTGTTCCCTGACAT 59.013 55.000 0.00 0.00 0.00 3.06
860 4124 1.951209 TCCAAGCCACTCTCATGGTA 58.049 50.000 0.00 0.00 42.28 3.25
861 4125 1.555075 TCCAAGCCACTCTCATGGTAC 59.445 52.381 0.00 0.00 42.28 3.34
949 4221 5.972107 CTGCAGGCCAGCTAATAATTATT 57.028 39.130 21.82 14.86 34.21 1.40
951 4223 7.452880 CTGCAGGCCAGCTAATAATTATTAA 57.547 36.000 21.82 0.00 34.21 1.40
953 4225 6.071952 TGCAGGCCAGCTAATAATTATTAAGC 60.072 38.462 21.82 18.93 34.99 3.09
984 4280 3.713615 CTGCGTAGACGGACGGACG 62.714 68.421 3.97 10.33 43.13 4.79
1023 4319 1.627864 GGCTGAGGGAGATAGAGTCC 58.372 60.000 0.00 0.00 0.00 3.85
1085 4381 0.453793 CTCGTCTGCCACTACCTCTG 59.546 60.000 0.00 0.00 0.00 3.35
1197 4493 0.039911 ACACCTCCTTCCTCGCTAGT 59.960 55.000 0.00 0.00 0.00 2.57
1199 4495 1.135333 CACCTCCTTCCTCGCTAGTTC 59.865 57.143 0.00 0.00 0.00 3.01
1200 4496 1.272536 ACCTCCTTCCTCGCTAGTTCA 60.273 52.381 0.00 0.00 0.00 3.18
1201 4497 2.035632 CCTCCTTCCTCGCTAGTTCAT 58.964 52.381 0.00 0.00 0.00 2.57
1202 4498 2.035321 CCTCCTTCCTCGCTAGTTCATC 59.965 54.545 0.00 0.00 0.00 2.92
1203 4499 2.955660 CTCCTTCCTCGCTAGTTCATCT 59.044 50.000 0.00 0.00 0.00 2.90
1204 4500 2.952978 TCCTTCCTCGCTAGTTCATCTC 59.047 50.000 0.00 0.00 0.00 2.75
1206 4502 1.693627 TCCTCGCTAGTTCATCTCCC 58.306 55.000 0.00 0.00 0.00 4.30
1207 4503 1.215673 TCCTCGCTAGTTCATCTCCCT 59.784 52.381 0.00 0.00 0.00 4.20
1208 4504 1.611491 CCTCGCTAGTTCATCTCCCTC 59.389 57.143 0.00 0.00 0.00 4.30
1209 4505 2.582052 CTCGCTAGTTCATCTCCCTCT 58.418 52.381 0.00 0.00 0.00 3.69
1210 4506 2.552315 CTCGCTAGTTCATCTCCCTCTC 59.448 54.545 0.00 0.00 0.00 3.20
1211 4507 1.611491 CGCTAGTTCATCTCCCTCTCC 59.389 57.143 0.00 0.00 0.00 3.71
1212 4508 1.967779 GCTAGTTCATCTCCCTCTCCC 59.032 57.143 0.00 0.00 0.00 4.30
1213 4509 2.604139 CTAGTTCATCTCCCTCTCCCC 58.396 57.143 0.00 0.00 0.00 4.81
1214 4510 0.030603 AGTTCATCTCCCTCTCCCCC 60.031 60.000 0.00 0.00 0.00 5.40
1215 4511 0.030603 GTTCATCTCCCTCTCCCCCT 60.031 60.000 0.00 0.00 0.00 4.79
1216 4512 0.266152 TTCATCTCCCTCTCCCCCTC 59.734 60.000 0.00 0.00 0.00 4.30
1217 4513 0.631998 TCATCTCCCTCTCCCCCTCT 60.632 60.000 0.00 0.00 0.00 3.69
1218 4514 0.178935 CATCTCCCTCTCCCCCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
1219 4515 0.330431 ATCTCCCTCTCCCCCTCTCT 60.330 60.000 0.00 0.00 0.00 3.10
1220 4516 0.996762 TCTCCCTCTCCCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1221 4517 0.998945 CTCCCTCTCCCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
1222 4518 0.996762 TCCCTCTCCCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1223 4519 0.998945 CCCTCTCCCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
1224 4520 0.478507 CCTCTCCCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
1225 4521 1.522900 CTCTCCCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
1226 4522 1.421646 CTCTCCCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1227 4523 1.010793 TCTCCCCCTCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
1228 4524 1.421646 CTCCCCCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1229 4525 1.010793 TCCCCCTCTCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
1230 4526 1.421646 CCCCCTCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1231 4527 2.412591 CCCCTCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
1232 4528 2.105477 CCCCTCTCTCTCTCTCTCTCTG 59.895 59.091 0.00 0.00 0.00 3.35
1233 4529 2.105477 CCCTCTCTCTCTCTCTCTCTGG 59.895 59.091 0.00 0.00 0.00 3.86
1234 4530 2.486191 CCTCTCTCTCTCTCTCTCTGGC 60.486 59.091 0.00 0.00 0.00 4.85
1235 4531 1.490490 TCTCTCTCTCTCTCTCTGGCC 59.510 57.143 0.00 0.00 0.00 5.36
1236 4532 1.212688 CTCTCTCTCTCTCTCTGGCCA 59.787 57.143 4.71 4.71 0.00 5.36
1237 4533 1.852309 TCTCTCTCTCTCTCTGGCCAT 59.148 52.381 5.51 0.00 0.00 4.40
1238 4534 1.958579 CTCTCTCTCTCTCTGGCCATG 59.041 57.143 5.51 2.03 0.00 3.66
1239 4535 1.042229 CTCTCTCTCTCTGGCCATGG 58.958 60.000 5.51 7.63 0.00 3.66
1240 4536 0.633378 TCTCTCTCTCTGGCCATGGA 59.367 55.000 18.40 6.77 0.00 3.41
1241 4537 1.042229 CTCTCTCTCTGGCCATGGAG 58.958 60.000 18.40 21.98 0.00 3.86
1252 4548 0.036388 GCCATGGAGTCTGGTTTCGA 60.036 55.000 18.40 0.00 36.10 3.71
1265 4561 3.782046 TGGTTTCGATCGATTCCTCTTC 58.218 45.455 27.27 11.95 0.00 2.87
1274 4836 1.539065 CGATTCCTCTTCCCATGTCCG 60.539 57.143 0.00 0.00 0.00 4.79
1278 4840 0.107654 CCTCTTCCCATGTCCGGTTC 60.108 60.000 0.00 0.00 0.00 3.62
1298 4860 1.599797 CCGCCTCCTGTTTTTCCGT 60.600 57.895 0.00 0.00 0.00 4.69
1325 4887 4.450080 TGTTCATTAGATCGATGCATGCTC 59.550 41.667 20.33 12.61 0.00 4.26
1332 4894 1.952635 CGATGCATGCTCGCTGCTA 60.953 57.895 20.33 0.00 43.37 3.49
1336 4898 2.944429 CATGCTCGCTGCTATGCC 59.056 61.111 0.00 0.00 43.37 4.40
1344 4906 1.027357 CGCTGCTATGCCAGGAAAAT 58.973 50.000 0.00 0.00 33.44 1.82
1381 4948 2.668144 AGCCTAAGAGTATCGAGCCT 57.332 50.000 0.00 0.00 42.67 4.58
1385 4952 2.226912 CCTAAGAGTATCGAGCCTTCCG 59.773 54.545 0.00 0.00 42.67 4.30
1386 4953 0.386113 AAGAGTATCGAGCCTTCCGC 59.614 55.000 0.00 0.00 42.67 5.54
1387 4954 1.007154 GAGTATCGAGCCTTCCGCC 60.007 63.158 0.00 0.00 38.78 6.13
1414 4986 0.673985 TACGAGCATGATCTTCCGGG 59.326 55.000 9.64 0.00 0.00 5.73
1416 4992 1.599240 GAGCATGATCTTCCGGGGC 60.599 63.158 3.07 0.00 0.00 5.80
1427 5003 3.451894 CCGGGGCATGGCTGAAAC 61.452 66.667 19.78 1.26 0.00 2.78
1451 5027 3.140623 GCATGGCCTTTGTTTGTTGAAT 58.859 40.909 3.32 0.00 0.00 2.57
1698 5283 3.753070 GATGACGACGTCCTCCGGC 62.753 68.421 24.33 0.79 42.89 6.13
1708 5293 3.866582 CCTCCGGCCCTGTCCATC 61.867 72.222 0.00 0.00 0.00 3.51
1835 5421 4.997171 TTACGCTTTTAGTACGTATGCG 57.003 40.909 16.84 16.84 41.42 4.73
1855 5441 2.769893 GCCCATCATTTTGCAAGTTGT 58.230 42.857 4.48 0.00 0.00 3.32
1864 5450 5.519566 TCATTTTGCAAGTTGTAGCTTTGTG 59.480 36.000 4.48 0.00 0.00 3.33
1891 5477 3.756933 TTTGTGAGGCCCGGTATATAC 57.243 47.619 0.00 4.14 0.00 1.47
1892 5478 1.250328 TGTGAGGCCCGGTATATACG 58.750 55.000 0.00 2.82 0.00 3.06
1893 5479 1.251251 GTGAGGCCCGGTATATACGT 58.749 55.000 0.00 0.00 0.00 3.57
1894 5480 2.224744 TGTGAGGCCCGGTATATACGTA 60.225 50.000 0.00 0.00 0.00 3.57
1895 5481 3.019564 GTGAGGCCCGGTATATACGTAT 58.980 50.000 13.54 13.54 0.00 3.06
1896 5482 3.018856 TGAGGCCCGGTATATACGTATG 58.981 50.000 18.37 0.59 0.00 2.39
1897 5483 3.282021 GAGGCCCGGTATATACGTATGA 58.718 50.000 18.37 3.16 0.00 2.15
1898 5484 3.285484 AGGCCCGGTATATACGTATGAG 58.715 50.000 18.37 4.77 0.00 2.90
1899 5485 3.019564 GGCCCGGTATATACGTATGAGT 58.980 50.000 18.37 6.74 0.00 3.41
1916 5502 4.944962 TGAGTTTTTCACTGACACTGTG 57.055 40.909 6.19 6.19 35.01 3.66
1926 5512 6.558771 TCACTGACACTGTGAATTAATTGG 57.441 37.500 15.86 0.00 38.88 3.16
1932 5518 5.841810 ACACTGTGAATTAATTGGTTGTGG 58.158 37.500 15.86 0.00 0.00 4.17
2123 5709 1.880340 CGGCATGAGGAAGACGCTC 60.880 63.158 0.00 0.00 0.00 5.03
2246 5847 9.330063 ACCAATTATATGTCACATGTACTCTTG 57.670 33.333 0.00 2.77 0.00 3.02
2247 5848 8.285394 CCAATTATATGTCACATGTACTCTTGC 58.715 37.037 0.00 0.00 0.00 4.01
2264 5878 1.878975 GCGGTTAGCTCCTCTTCGC 60.879 63.158 0.00 0.00 44.04 4.70
2340 5954 1.882623 GGGTGTTCCAGAAGCAGAAAG 59.117 52.381 0.00 0.00 35.00 2.62
2372 5986 4.070552 GACAACGCCCGCTCCTCT 62.071 66.667 0.00 0.00 0.00 3.69
2492 6106 2.134287 GCCACGGCAGGAGGAGATA 61.134 63.158 2.36 0.00 41.49 1.98
2493 6107 1.476007 GCCACGGCAGGAGGAGATAT 61.476 60.000 2.36 0.00 41.49 1.63
2504 6118 1.001406 GAGGAGATATTCTGTGGCCCG 59.999 57.143 0.00 0.00 0.00 6.13
2506 6120 1.001406 GGAGATATTCTGTGGCCCGAG 59.999 57.143 0.00 0.00 0.00 4.63
2549 6163 0.804989 GGCAGCAATACAACTCGCTT 59.195 50.000 0.00 0.00 30.72 4.68
2606 6220 2.203379 TCGCCGACGATGGGGATA 60.203 61.111 12.03 0.00 45.08 2.59
2607 6221 2.258591 CGCCGACGATGGGGATAG 59.741 66.667 8.62 0.00 44.30 2.08
2608 6222 2.657237 GCCGACGATGGGGATAGG 59.343 66.667 0.00 0.00 0.00 2.57
2614 6228 2.596851 CGATGGGGATAGGGGCCAG 61.597 68.421 4.39 0.00 0.00 4.85
2630 6244 1.042559 CCAGAGGAGGAGCAGGAGAC 61.043 65.000 0.00 0.00 0.00 3.36
2649 6263 1.272490 ACGAGTGCGGATTCTTCTTCA 59.728 47.619 0.00 0.00 43.17 3.02
2651 6265 2.932614 CGAGTGCGGATTCTTCTTCAAT 59.067 45.455 0.00 0.00 0.00 2.57
2701 6315 1.307647 CCATGAGGTTCCCCCAAGG 59.692 63.158 0.00 0.00 34.66 3.61
2772 6386 7.357303 GTTGTGTATACGTTGTGAAGGAAAAT 58.643 34.615 0.00 0.00 0.00 1.82
2788 6402 9.173021 TGAAGGAAAATCTAGCGATTGAATTAA 57.827 29.630 0.00 0.00 39.72 1.40
2814 6428 8.665643 TTAATTCCATTGGTATTGTAGGTACG 57.334 34.615 15.59 0.00 0.00 3.67
2815 6429 5.680594 TTCCATTGGTATTGTAGGTACGT 57.319 39.130 1.86 0.00 0.00 3.57
2816 6430 6.788598 TTCCATTGGTATTGTAGGTACGTA 57.211 37.500 1.86 0.00 0.00 3.57
2818 6432 8.476064 TTCCATTGGTATTGTAGGTACGTATA 57.524 34.615 0.00 0.00 0.00 1.47
2835 6449 6.925610 ACGTATAGTGTGAGGTCGTTTATA 57.074 37.500 0.00 0.00 0.00 0.98
2836 6450 7.320443 ACGTATAGTGTGAGGTCGTTTATAA 57.680 36.000 0.00 0.00 0.00 0.98
2837 6451 7.934457 ACGTATAGTGTGAGGTCGTTTATAAT 58.066 34.615 0.00 0.00 0.00 1.28
2865 6479 7.556844 AGATTGGTAAAAGATCGAGTGTGTAT 58.443 34.615 0.00 0.00 0.00 2.29
2868 6482 7.160547 TGGTAAAAGATCGAGTGTGTATGTA 57.839 36.000 0.00 0.00 0.00 2.29
2870 6484 6.474751 GGTAAAAGATCGAGTGTGTATGTACC 59.525 42.308 0.00 0.00 0.00 3.34
2880 6494 3.865745 GTGTGTATGTACCTGCATGAGAC 59.134 47.826 0.00 0.00 0.00 3.36
2899 6513 1.589803 CGGTTTCGTTTCAGTCCCTT 58.410 50.000 0.00 0.00 0.00 3.95
2901 6515 2.567985 GGTTTCGTTTCAGTCCCTTGA 58.432 47.619 0.00 0.00 0.00 3.02
2902 6516 2.946990 GGTTTCGTTTCAGTCCCTTGAA 59.053 45.455 0.00 0.00 35.38 2.69
2903 6517 3.568430 GGTTTCGTTTCAGTCCCTTGAAT 59.432 43.478 0.00 0.00 36.97 2.57
2904 6518 4.537015 GTTTCGTTTCAGTCCCTTGAATG 58.463 43.478 0.00 0.00 36.97 2.67
2905 6519 3.762407 TCGTTTCAGTCCCTTGAATGA 57.238 42.857 0.00 0.00 43.33 2.57
2907 6521 4.002982 TCGTTTCAGTCCCTTGAATGATG 58.997 43.478 0.00 0.00 44.30 3.07
2908 6522 3.426695 CGTTTCAGTCCCTTGAATGATGC 60.427 47.826 0.00 0.00 44.30 3.91
2909 6523 2.425143 TCAGTCCCTTGAATGATGCC 57.575 50.000 0.00 0.00 40.42 4.40
2960 6584 9.884636 ACTCATATGTAAATTAGTACAGCACAA 57.115 29.630 1.90 0.00 37.41 3.33
3006 6637 5.393027 GGAAACATCATTGCGTTGTTCCTAT 60.393 40.000 0.00 0.00 36.69 2.57
3007 6638 4.621068 ACATCATTGCGTTGTTCCTATG 57.379 40.909 0.00 0.00 0.00 2.23
3016 6647 3.489785 GCGTTGTTCCTATGGAAGATACG 59.510 47.826 17.52 17.52 42.88 3.06
3017 6648 4.679662 CGTTGTTCCTATGGAAGATACGT 58.320 43.478 15.51 0.00 42.88 3.57
3018 6649 5.734220 GCGTTGTTCCTATGGAAGATACGTA 60.734 44.000 20.08 0.00 42.88 3.57
3019 6650 5.913514 CGTTGTTCCTATGGAAGATACGTAG 59.086 44.000 0.08 0.00 42.88 3.51
3020 6651 6.238566 CGTTGTTCCTATGGAAGATACGTAGA 60.239 42.308 0.08 0.00 42.88 2.59
3021 6652 7.521748 CGTTGTTCCTATGGAAGATACGTAGAT 60.522 40.741 0.08 0.00 42.88 1.98
3022 6653 8.790718 GTTGTTCCTATGGAAGATACGTAGATA 58.209 37.037 0.08 0.00 42.88 1.98
3025 6656 9.664332 GTTCCTATGGAAGATACGTAGATAGTA 57.336 37.037 0.08 0.00 42.88 1.82
3027 6658 9.044646 TCCTATGGAAGATACGTAGATAGTACT 57.955 37.037 0.00 0.00 30.70 2.73
3028 6659 9.669887 CCTATGGAAGATACGTAGATAGTACTT 57.330 37.037 0.00 0.00 30.70 2.24
3031 6662 8.743085 TGGAAGATACGTAGATAGTACTTTGT 57.257 34.615 0.00 0.00 0.00 2.83
3070 6816 8.522542 TCTCCTTTTCTAACTGGAGATACTAC 57.477 38.462 6.49 0.00 46.91 2.73
3071 6817 7.282675 TCTCCTTTTCTAACTGGAGATACTACG 59.717 40.741 6.49 0.00 46.91 3.51
3072 6818 6.888632 TCCTTTTCTAACTGGAGATACTACGT 59.111 38.462 0.00 0.00 0.00 3.57
3073 6819 6.973474 CCTTTTCTAACTGGAGATACTACGTG 59.027 42.308 0.00 0.00 0.00 4.49
3074 6820 5.496133 TTCTAACTGGAGATACTACGTGC 57.504 43.478 0.00 0.00 0.00 5.34
3075 6821 4.778579 TCTAACTGGAGATACTACGTGCT 58.221 43.478 0.00 0.00 0.00 4.40
3076 6822 4.815308 TCTAACTGGAGATACTACGTGCTC 59.185 45.833 0.00 0.00 0.00 4.26
3077 6823 3.284793 ACTGGAGATACTACGTGCTCT 57.715 47.619 0.00 0.00 0.00 4.09
3079 6825 3.628487 ACTGGAGATACTACGTGCTCTTC 59.372 47.826 0.00 0.00 0.00 2.87
3080 6826 3.880490 CTGGAGATACTACGTGCTCTTCT 59.120 47.826 0.00 0.00 0.00 2.85
3081 6827 3.628032 TGGAGATACTACGTGCTCTTCTG 59.372 47.826 0.00 0.00 0.00 3.02
3082 6828 3.549221 GGAGATACTACGTGCTCTTCTGC 60.549 52.174 0.00 0.00 0.00 4.26
3089 6835 3.923354 GTGCTCTTCTGCAGGAGAA 57.077 52.632 24.96 11.17 44.20 2.87
3091 6837 1.051008 TGCTCTTCTGCAGGAGAACA 58.949 50.000 24.96 23.34 35.64 3.18
3096 6842 3.668447 TCTTCTGCAGGAGAACATGTTC 58.332 45.455 27.69 27.69 35.64 3.18
3097 6843 2.479566 TCTGCAGGAGAACATGTTCC 57.520 50.000 30.34 19.88 40.33 3.62
3098 6844 1.980765 TCTGCAGGAGAACATGTTCCT 59.019 47.619 30.34 21.73 44.59 3.36
3100 6846 3.196469 TCTGCAGGAGAACATGTTCCTAG 59.804 47.826 30.34 18.74 41.86 3.02
3124 6900 4.141642 TGGGTGTGTGGATTATCTGATCTG 60.142 45.833 0.00 0.00 0.00 2.90
3125 6901 4.141620 GGGTGTGTGGATTATCTGATCTGT 60.142 45.833 0.00 0.00 0.00 3.41
3151 6927 7.986085 TCTCCTTTATTTCAAGTTTCCTGAG 57.014 36.000 0.00 0.00 0.00 3.35
3152 6928 7.745717 TCTCCTTTATTTCAAGTTTCCTGAGA 58.254 34.615 0.00 0.00 0.00 3.27
3153 6929 8.386264 TCTCCTTTATTTCAAGTTTCCTGAGAT 58.614 33.333 0.00 0.00 0.00 2.75
3156 6932 8.796475 CCTTTATTTCAAGTTTCCTGAGATGAA 58.204 33.333 0.00 0.00 0.00 2.57
3162 6938 5.525012 TCAAGTTTCCTGAGATGAATATGCG 59.475 40.000 0.00 0.00 0.00 4.73
3163 6939 5.028549 AGTTTCCTGAGATGAATATGCGT 57.971 39.130 0.00 0.00 0.00 5.24
3167 6943 2.804527 CCTGAGATGAATATGCGTGTGG 59.195 50.000 0.00 0.00 0.00 4.17
3237 7017 7.431376 CAGTCAAGATTGCAAATATACTGCTTG 59.569 37.037 1.71 7.59 40.59 4.01
3259 7039 5.308825 TGGTCTTTTCCAAACAAGCAAAAA 58.691 33.333 0.00 0.00 34.24 1.94
3296 7078 5.415701 AGAACTTGGTTTGCTGGTACATATG 59.584 40.000 0.00 0.00 38.20 1.78
3297 7079 3.443681 ACTTGGTTTGCTGGTACATATGC 59.556 43.478 1.58 0.00 38.20 3.14
3302 7084 4.142182 GGTTTGCTGGTACATATGCATGTT 60.142 41.667 10.16 0.00 42.98 2.71
3303 7085 4.898829 TTGCTGGTACATATGCATGTTC 57.101 40.909 10.16 0.00 42.98 3.18
3304 7086 4.155063 TGCTGGTACATATGCATGTTCT 57.845 40.909 10.16 0.00 42.98 3.01
3306 7088 5.056480 TGCTGGTACATATGCATGTTCTAC 58.944 41.667 10.16 4.62 42.98 2.59
3310 7092 4.447724 GGTACATATGCATGTTCTACGGTG 59.552 45.833 10.16 0.00 42.98 4.94
3311 7093 2.872245 ACATATGCATGTTCTACGGTGC 59.128 45.455 10.16 0.00 42.98 5.01
3313 7095 0.035534 ATGCATGTTCTACGGTGCCA 60.036 50.000 0.00 0.00 33.28 4.92
3317 7099 1.204704 CATGTTCTACGGTGCCAGAGA 59.795 52.381 0.00 0.00 0.00 3.10
3318 7100 1.334160 TGTTCTACGGTGCCAGAGAA 58.666 50.000 0.00 0.00 0.00 2.87
3319 7101 1.272490 TGTTCTACGGTGCCAGAGAAG 59.728 52.381 0.00 0.00 0.00 2.85
3320 7102 1.544691 GTTCTACGGTGCCAGAGAAGA 59.455 52.381 0.00 0.00 0.00 2.87
3424 7262 4.697756 CAGCCGGCGTTGGAGGAA 62.698 66.667 23.20 0.00 0.00 3.36
3460 7298 1.089920 GATCGTGCACTGCTGGATTT 58.910 50.000 16.19 0.00 0.00 2.17
3472 7310 1.200020 GCTGGATTTGGTCGTGGAAAG 59.800 52.381 0.00 0.00 0.00 2.62
3497 7335 3.281158 ACGGCTAGAGGTAGAAGAAGAC 58.719 50.000 0.00 0.00 0.00 3.01
3514 7352 1.094785 GACCATCCAACCGTCCATTG 58.905 55.000 0.00 0.00 0.00 2.82
3525 7363 1.472480 CCGTCCATTGTTCATCCAACC 59.528 52.381 0.00 0.00 33.51 3.77
3543 7381 2.413837 ACCGTTCAGATTTTCGACTGG 58.586 47.619 1.40 0.00 35.20 4.00
3549 7387 2.807967 TCAGATTTTCGACTGGCACTTG 59.192 45.455 1.40 0.00 35.20 3.16
3563 7401 2.802247 GGCACTTGGTTTCTTTTCATGC 59.198 45.455 0.00 0.00 0.00 4.06
3577 7415 2.477104 TCATGCACCTGAGGGATAGA 57.523 50.000 2.38 0.00 36.25 1.98
3578 7416 2.981921 TCATGCACCTGAGGGATAGAT 58.018 47.619 2.38 0.00 36.25 1.98
3579 7417 4.132122 TCATGCACCTGAGGGATAGATA 57.868 45.455 2.38 0.00 36.25 1.98
3580 7418 4.092279 TCATGCACCTGAGGGATAGATAG 58.908 47.826 2.38 0.00 36.25 2.08
3581 7419 2.894731 TGCACCTGAGGGATAGATAGG 58.105 52.381 2.38 0.00 36.25 2.57
3582 7420 1.552792 GCACCTGAGGGATAGATAGGC 59.447 57.143 2.38 0.00 36.25 3.93
3583 7421 2.183679 CACCTGAGGGATAGATAGGCC 58.816 57.143 2.38 0.00 36.25 5.19
3584 7422 1.272760 ACCTGAGGGATAGATAGGCCG 60.273 57.143 2.38 0.00 36.25 6.13
3585 7423 1.272760 CCTGAGGGATAGATAGGCCGT 60.273 57.143 0.00 0.00 33.58 5.68
3586 7424 2.025226 CCTGAGGGATAGATAGGCCGTA 60.025 54.545 0.00 0.00 33.58 4.02
3587 7425 3.283751 CTGAGGGATAGATAGGCCGTAG 58.716 54.545 0.00 0.00 0.00 3.51
3606 7444 1.376037 GCGGGCCTCTACATATGGC 60.376 63.158 7.80 0.00 45.42 4.40
3617 7455 6.559810 CCTCTACATATGGCTTATCTTCTCG 58.440 44.000 7.80 0.00 0.00 4.04
3621 7459 6.412362 ACATATGGCTTATCTTCTCGAAGT 57.588 37.500 7.80 0.00 39.38 3.01
3658 7502 5.721232 AGAATGGAAGAACTTACTGGTACG 58.279 41.667 0.00 0.00 0.00 3.67
3671 7515 3.521560 ACTGGTACGTATGCATGTTCTG 58.478 45.455 10.16 3.20 0.00 3.02
3678 7522 2.535534 CGTATGCATGTTCTGTTCTGCG 60.536 50.000 10.16 0.00 37.44 5.18
3679 7523 1.527034 ATGCATGTTCTGTTCTGCGT 58.473 45.000 0.00 0.00 37.44 5.24
3688 7532 1.548973 CTGTTCTGCGTCACGTCCAC 61.549 60.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 155 6.867519 AAGGGAAAATTAAATGATCGGGTT 57.132 33.333 0.00 0.00 0.00 4.11
147 165 7.310175 GGGAAGGAATCGAAAGGGAAAATTAAA 60.310 37.037 0.00 0.00 0.00 1.52
153 171 2.291346 GGGGAAGGAATCGAAAGGGAAA 60.291 50.000 0.00 0.00 0.00 3.13
155 173 0.916809 GGGGAAGGAATCGAAAGGGA 59.083 55.000 0.00 0.00 0.00 4.20
175 193 3.248446 TTTACGCCGCTGCTTCCCT 62.248 57.895 0.00 0.00 34.43 4.20
176 194 2.744709 TTTACGCCGCTGCTTCCC 60.745 61.111 0.00 0.00 34.43 3.97
186 204 3.122971 GCAGGGTCGGTTTACGCC 61.123 66.667 0.00 0.00 43.86 5.68
193 211 3.484806 TGTTGGTGCAGGGTCGGT 61.485 61.111 0.00 0.00 0.00 4.69
195 213 2.203139 TGTGTTGGTGCAGGGTCG 60.203 61.111 0.00 0.00 0.00 4.79
211 229 4.222588 GGGTATTGATCCTCCTCATCTCTG 59.777 50.000 0.00 0.00 0.00 3.35
221 239 3.185455 AGGCATAGGGGTATTGATCCTC 58.815 50.000 0.00 0.00 32.46 3.71
223 241 3.054802 CAGAGGCATAGGGGTATTGATCC 60.055 52.174 0.00 0.00 0.00 3.36
233 251 0.827925 TAGACGGCAGAGGCATAGGG 60.828 60.000 0.00 0.00 43.71 3.53
236 254 1.319541 GTCTAGACGGCAGAGGCATA 58.680 55.000 7.22 0.00 43.71 3.14
237 255 2.119886 GTCTAGACGGCAGAGGCAT 58.880 57.895 7.22 0.00 43.71 4.40
238 256 3.604629 GTCTAGACGGCAGAGGCA 58.395 61.111 7.22 0.00 43.71 4.75
252 270 8.601476 CCTTCGTAAAGAAATATAAAAGCGTCT 58.399 33.333 0.00 0.00 38.57 4.18
253 271 7.849515 CCCTTCGTAAAGAAATATAAAAGCGTC 59.150 37.037 0.00 0.00 38.57 5.19
255 273 7.912383 TCCCTTCGTAAAGAAATATAAAAGCG 58.088 34.615 0.00 0.00 38.57 4.68
271 289 4.434545 AGAGCATAGTACTCCCTTCGTA 57.565 45.455 0.00 0.00 34.56 3.43
274 292 7.375053 CAGAATAAGAGCATAGTACTCCCTTC 58.625 42.308 0.00 0.00 34.56 3.46
275 293 6.239458 GCAGAATAAGAGCATAGTACTCCCTT 60.239 42.308 0.00 0.00 34.56 3.95
278 296 5.157781 CGCAGAATAAGAGCATAGTACTCC 58.842 45.833 0.00 0.00 34.56 3.85
279 297 5.157781 CCGCAGAATAAGAGCATAGTACTC 58.842 45.833 0.00 0.00 0.00 2.59
300 3211 5.048507 GTCTAAAAATACTGCTAGTCCCCG 58.951 45.833 0.00 0.00 0.00 5.73
333 3244 2.036006 TGCACGCGGTGTTAATCCC 61.036 57.895 12.47 0.00 35.75 3.85
338 3249 1.521906 AAGTGTGCACGCGGTGTTA 60.522 52.632 23.74 0.00 35.75 2.41
340 3251 3.572539 CAAGTGTGCACGCGGTGT 61.573 61.111 23.74 8.73 35.75 4.16
357 3275 8.523658 AGTCCAAAAGATTATTAAACCAGAAGC 58.476 33.333 0.00 0.00 0.00 3.86
380 3607 6.207213 TCAACGTCTTCTCTTTTCTACAGTC 58.793 40.000 0.00 0.00 0.00 3.51
387 3614 6.771188 TCATTCTCAACGTCTTCTCTTTTC 57.229 37.500 0.00 0.00 0.00 2.29
394 3624 4.670221 GCCATGTTCATTCTCAACGTCTTC 60.670 45.833 0.00 0.00 0.00 2.87
414 3644 1.621992 TCAACAAATTAAGCCCGCCA 58.378 45.000 0.00 0.00 0.00 5.69
419 3649 2.845967 CACGCGATCAACAAATTAAGCC 59.154 45.455 15.93 0.00 0.00 4.35
458 3688 3.443045 CCCCGCAAGCCATGACAC 61.443 66.667 0.00 0.00 0.00 3.67
605 3835 2.869192 CTGCTTAGCTTAGCTTGGCTAC 59.131 50.000 23.89 9.36 41.12 3.58
610 3840 0.027324 GCGCTGCTTAGCTTAGCTTG 59.973 55.000 23.89 17.24 41.76 4.01
774 4029 9.114952 GAGAGACAACTCGATATATCCATATCA 57.885 37.037 7.15 0.00 46.64 2.15
860 4124 3.262915 ACTGGAAGAAGCAAGAGCTATGT 59.737 43.478 0.00 0.00 45.27 2.29
861 4125 3.871485 ACTGGAAGAAGCAAGAGCTATG 58.129 45.455 0.00 0.00 45.27 2.23
862 4126 4.566426 AACTGGAAGAAGCAAGAGCTAT 57.434 40.909 0.00 0.00 45.27 2.97
869 4133 2.290323 GGGAGCTAACTGGAAGAAGCAA 60.290 50.000 0.00 0.00 44.83 3.91
870 4134 1.279271 GGGAGCTAACTGGAAGAAGCA 59.721 52.381 0.00 0.00 44.83 3.91
872 4136 1.134670 CGGGGAGCTAACTGGAAGAAG 60.135 57.143 0.00 0.00 37.43 2.85
875 4139 1.522569 CCGGGGAGCTAACTGGAAG 59.477 63.158 8.94 0.00 42.29 3.46
876 4140 2.666098 GCCGGGGAGCTAACTGGAA 61.666 63.158 17.03 0.00 35.02 3.53
878 4142 4.176752 GGCCGGGGAGCTAACTGG 62.177 72.222 2.18 10.03 36.18 4.00
881 4145 4.832608 CACGGCCGGGGAGCTAAC 62.833 72.222 31.76 0.00 0.00 2.34
938 4210 9.003658 CCACCTGACCAGCTTAATAATTATTAG 57.996 37.037 15.65 11.86 30.57 1.73
944 4216 3.688414 GCCCACCTGACCAGCTTAATAAT 60.688 47.826 0.00 0.00 0.00 1.28
945 4217 2.356741 GCCCACCTGACCAGCTTAATAA 60.357 50.000 0.00 0.00 0.00 1.40
946 4218 1.211949 GCCCACCTGACCAGCTTAATA 59.788 52.381 0.00 0.00 0.00 0.98
947 4219 0.034089 GCCCACCTGACCAGCTTAAT 60.034 55.000 0.00 0.00 0.00 1.40
948 4220 1.133809 AGCCCACCTGACCAGCTTAA 61.134 55.000 0.00 0.00 0.00 1.85
949 4221 1.538876 AGCCCACCTGACCAGCTTA 60.539 57.895 0.00 0.00 0.00 3.09
950 4222 2.856000 AGCCCACCTGACCAGCTT 60.856 61.111 0.00 0.00 0.00 3.74
951 4223 3.644606 CAGCCCACCTGACCAGCT 61.645 66.667 0.00 0.00 44.64 4.24
984 4280 2.200092 ATCCCTCCCGCTCTCTCC 59.800 66.667 0.00 0.00 0.00 3.71
1085 4381 0.868406 CTCGTTGGTCACCTTCTTGC 59.132 55.000 0.00 0.00 0.00 4.01
1197 4493 0.266152 GAGGGGGAGAGGGAGATGAA 59.734 60.000 0.00 0.00 0.00 2.57
1199 4495 0.178935 GAGAGGGGGAGAGGGAGATG 60.179 65.000 0.00 0.00 0.00 2.90
1200 4496 0.330431 AGAGAGGGGGAGAGGGAGAT 60.330 60.000 0.00 0.00 0.00 2.75
1201 4497 0.996762 GAGAGAGGGGGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
1202 4498 0.998945 AGAGAGAGGGGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
1203 4499 0.996762 GAGAGAGAGGGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
1204 4500 0.998945 AGAGAGAGAGGGGGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
1206 4502 1.421646 GAGAGAGAGAGAGGGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
1207 4503 1.010793 AGAGAGAGAGAGAGGGGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
1208 4504 1.421646 GAGAGAGAGAGAGAGGGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
1209 4505 1.010793 AGAGAGAGAGAGAGAGGGGGA 59.989 57.143 0.00 0.00 0.00 4.81
1210 4506 1.421646 GAGAGAGAGAGAGAGAGGGGG 59.578 61.905 0.00 0.00 0.00 5.40
1211 4507 2.105477 CAGAGAGAGAGAGAGAGAGGGG 59.895 59.091 0.00 0.00 0.00 4.79
1212 4508 2.105477 CCAGAGAGAGAGAGAGAGAGGG 59.895 59.091 0.00 0.00 0.00 4.30
1213 4509 2.486191 GCCAGAGAGAGAGAGAGAGAGG 60.486 59.091 0.00 0.00 0.00 3.69
1214 4510 2.486191 GGCCAGAGAGAGAGAGAGAGAG 60.486 59.091 0.00 0.00 0.00 3.20
1215 4511 1.490490 GGCCAGAGAGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
1216 4512 1.212688 TGGCCAGAGAGAGAGAGAGAG 59.787 57.143 0.00 0.00 0.00 3.20
1217 4513 1.294041 TGGCCAGAGAGAGAGAGAGA 58.706 55.000 0.00 0.00 0.00 3.10
1218 4514 1.958579 CATGGCCAGAGAGAGAGAGAG 59.041 57.143 13.05 0.00 0.00 3.20
1219 4515 1.411359 CCATGGCCAGAGAGAGAGAGA 60.411 57.143 13.05 0.00 0.00 3.10
1220 4516 1.042229 CCATGGCCAGAGAGAGAGAG 58.958 60.000 13.05 0.00 0.00 3.20
1221 4517 0.633378 TCCATGGCCAGAGAGAGAGA 59.367 55.000 13.05 0.00 0.00 3.10
1222 4518 1.042229 CTCCATGGCCAGAGAGAGAG 58.958 60.000 24.20 13.53 31.43 3.20
1223 4519 0.337773 ACTCCATGGCCAGAGAGAGA 59.662 55.000 31.47 13.40 34.13 3.10
1224 4520 0.752054 GACTCCATGGCCAGAGAGAG 59.248 60.000 31.47 24.64 34.13 3.20
1225 4521 0.337773 AGACTCCATGGCCAGAGAGA 59.662 55.000 31.47 16.46 34.13 3.10
1226 4522 0.464870 CAGACTCCATGGCCAGAGAG 59.535 60.000 24.71 25.33 34.13 3.20
1227 4523 0.979709 CCAGACTCCATGGCCAGAGA 60.980 60.000 24.71 16.47 34.13 3.10
1228 4524 1.270414 ACCAGACTCCATGGCCAGAG 61.270 60.000 18.11 18.11 41.87 3.35
1229 4525 0.842030 AACCAGACTCCATGGCCAGA 60.842 55.000 13.05 2.42 41.87 3.86
1230 4526 0.038744 AAACCAGACTCCATGGCCAG 59.961 55.000 13.05 2.35 41.87 4.85
1231 4527 0.038166 GAAACCAGACTCCATGGCCA 59.962 55.000 8.56 8.56 41.87 5.36
1232 4528 1.026718 CGAAACCAGACTCCATGGCC 61.027 60.000 6.96 0.00 41.87 5.36
1233 4529 0.036388 TCGAAACCAGACTCCATGGC 60.036 55.000 6.96 0.00 41.87 4.40
1234 4530 2.555199 GATCGAAACCAGACTCCATGG 58.445 52.381 4.97 4.97 43.87 3.66
1235 4531 2.159240 TCGATCGAAACCAGACTCCATG 60.159 50.000 16.99 0.00 0.00 3.66
1236 4532 2.100197 TCGATCGAAACCAGACTCCAT 58.900 47.619 16.99 0.00 0.00 3.41
1237 4533 1.541379 TCGATCGAAACCAGACTCCA 58.459 50.000 16.99 0.00 0.00 3.86
1238 4534 2.873133 ATCGATCGAAACCAGACTCC 57.127 50.000 23.50 0.00 0.00 3.85
1239 4535 3.117046 GGAATCGATCGAAACCAGACTC 58.883 50.000 27.35 13.56 0.00 3.36
1240 4536 2.761208 AGGAATCGATCGAAACCAGACT 59.239 45.455 30.92 17.77 0.00 3.24
1241 4537 3.117046 GAGGAATCGATCGAAACCAGAC 58.883 50.000 30.92 22.01 0.00 3.51
1252 4548 2.370189 GGACATGGGAAGAGGAATCGAT 59.630 50.000 0.00 0.00 0.00 3.59
1278 4840 1.977009 GGAAAAACAGGAGGCGGGG 60.977 63.158 0.00 0.00 0.00 5.73
1286 4848 2.680841 TGAACACAGACGGAAAAACAGG 59.319 45.455 0.00 0.00 0.00 4.00
1298 4860 5.009854 TGCATCGATCTAATGAACACAGA 57.990 39.130 0.00 0.00 0.00 3.41
1325 4887 1.027357 ATTTTCCTGGCATAGCAGCG 58.973 50.000 0.00 0.00 34.64 5.18
1332 4894 7.862675 ACTAGTAAGAACTATTTTCCTGGCAT 58.137 34.615 0.00 0.00 37.57 4.40
1336 4898 8.779354 AGCAACTAGTAAGAACTATTTTCCTG 57.221 34.615 0.00 0.00 37.57 3.86
1344 4906 8.051535 TCTTAGGCTAGCAACTAGTAAGAACTA 58.948 37.037 18.24 0.74 33.12 2.24
1381 4948 2.004583 CTCGTAATCACTTGGCGGAA 57.995 50.000 0.00 0.00 0.00 4.30
1385 4952 2.279741 TCATGCTCGTAATCACTTGGC 58.720 47.619 0.00 0.00 0.00 4.52
1386 4953 4.375272 AGATCATGCTCGTAATCACTTGG 58.625 43.478 0.00 0.00 0.00 3.61
1387 4954 5.050499 GGAAGATCATGCTCGTAATCACTTG 60.050 44.000 0.00 0.00 0.00 3.16
1427 5003 0.393820 ACAAACAAAGGCCATGCTGG 59.606 50.000 5.01 0.00 41.55 4.85
1474 5053 6.145534 GCTTGTTCATTATTATGACCGATCGA 59.854 38.462 18.66 0.00 40.42 3.59
1475 5054 6.073819 TGCTTGTTCATTATTATGACCGATCG 60.074 38.462 8.51 8.51 40.42 3.69
1476 5055 7.189693 TGCTTGTTCATTATTATGACCGATC 57.810 36.000 0.00 0.00 40.42 3.69
1477 5056 7.566760 TTGCTTGTTCATTATTATGACCGAT 57.433 32.000 0.00 0.00 40.42 4.18
1529 5109 5.851047 ACTAAACGGGACAAAAATACTCG 57.149 39.130 0.00 0.00 0.00 4.18
1624 5208 7.229306 TCTGATCAGTTAATGCATTATTGGGAC 59.771 37.037 21.92 13.83 0.00 4.46
1698 5283 1.617018 TTGCGAGGAGATGGACAGGG 61.617 60.000 0.00 0.00 0.00 4.45
1708 5293 1.959899 GCATGTGACGTTGCGAGGAG 61.960 60.000 0.00 0.00 0.00 3.69
1835 5421 2.769893 ACAACTTGCAAAATGATGGGC 58.230 42.857 15.79 0.00 0.00 5.36
1864 5450 1.429148 CGGGCCTCACAAATCGTAGC 61.429 60.000 0.84 0.00 0.00 3.58
1891 5477 5.234329 ACAGTGTCAGTGAAAAACTCATACG 59.766 40.000 14.73 0.00 36.83 3.06
1892 5478 6.257849 TCACAGTGTCAGTGAAAAACTCATAC 59.742 38.462 14.73 0.00 42.57 2.39
1893 5479 6.345298 TCACAGTGTCAGTGAAAAACTCATA 58.655 36.000 14.73 0.00 42.57 2.15
1894 5480 5.185454 TCACAGTGTCAGTGAAAAACTCAT 58.815 37.500 14.73 0.00 42.57 2.90
1895 5481 4.574892 TCACAGTGTCAGTGAAAAACTCA 58.425 39.130 14.73 0.00 42.57 3.41
1916 5502 4.454161 GCCCAAACCACAACCAATTAATTC 59.546 41.667 0.00 0.00 0.00 2.17
2063 5649 4.760047 CGCACCTCCCGGTCCTTG 62.760 72.222 0.00 0.00 43.24 3.61
2123 5709 2.494918 CGGCCCTGGTAGAAGACG 59.505 66.667 0.00 0.00 0.00 4.18
2236 5832 2.159085 GGAGCTAACCGCAAGAGTACAT 60.159 50.000 0.00 0.00 42.61 2.29
2246 5847 1.878975 GCGAAGAGGAGCTAACCGC 60.879 63.158 0.00 0.00 39.57 5.68
2247 5848 0.248702 GAGCGAAGAGGAGCTAACCG 60.249 60.000 0.00 0.00 44.69 4.44
2264 5878 3.246226 CCAGATCAATTAGAAACGCCGAG 59.754 47.826 0.00 0.00 0.00 4.63
2340 5954 3.112709 GTCTTGCTCGCCGTCCAC 61.113 66.667 0.00 0.00 0.00 4.02
2504 6118 3.567797 GCGTTCATCAGCGGGCTC 61.568 66.667 0.00 0.00 0.00 4.70
2511 6125 2.167219 ACATCGCCGCGTTCATCAG 61.167 57.895 13.39 0.00 0.00 2.90
2549 6163 0.606604 GCGGGTACTGGTCAAGAAGA 59.393 55.000 0.00 0.00 33.56 2.87
2596 6210 2.529136 TGGCCCCTATCCCCATCG 60.529 66.667 0.00 0.00 0.00 3.84
2600 6214 2.530406 CCTCTGGCCCCTATCCCC 60.530 72.222 0.00 0.00 0.00 4.81
2601 6215 1.537643 CTCCTCTGGCCCCTATCCC 60.538 68.421 0.00 0.00 0.00 3.85
2602 6216 1.537643 CCTCCTCTGGCCCCTATCC 60.538 68.421 0.00 0.00 0.00 2.59
2603 6217 0.544120 CTCCTCCTCTGGCCCCTATC 60.544 65.000 0.00 0.00 0.00 2.08
2604 6218 1.551358 CTCCTCCTCTGGCCCCTAT 59.449 63.158 0.00 0.00 0.00 2.57
2605 6219 3.028683 CTCCTCCTCTGGCCCCTA 58.971 66.667 0.00 0.00 0.00 3.53
2606 6220 4.814041 GCTCCTCCTCTGGCCCCT 62.814 72.222 0.00 0.00 0.00 4.79
2608 6222 3.478274 CTGCTCCTCCTCTGGCCC 61.478 72.222 0.00 0.00 0.00 5.80
2614 6228 1.077357 TCGTCTCCTGCTCCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
2624 6238 0.681564 AGAATCCGCACTCGTCTCCT 60.682 55.000 0.00 0.00 0.00 3.69
2630 6244 1.996292 TGAAGAAGAATCCGCACTCG 58.004 50.000 0.00 0.00 0.00 4.18
2730 6344 3.323136 CGATCACTAGGCGCGCAC 61.323 66.667 34.42 21.95 0.00 5.34
2731 6345 3.350909 AACGATCACTAGGCGCGCA 62.351 57.895 34.42 12.90 0.00 6.09
2739 6353 5.796437 CACAACGTATACACAACGATCACTA 59.204 40.000 3.32 0.00 42.90 2.74
2788 6402 9.280174 CGTACCTACAATACCAATGGAATTAAT 57.720 33.333 6.16 0.00 32.46 1.40
2804 6418 5.500234 ACCTCACACTATACGTACCTACAA 58.500 41.667 0.00 0.00 0.00 2.41
2836 6450 9.698309 CACACTCGATCTTTTACCAATCTATAT 57.302 33.333 0.00 0.00 0.00 0.86
2837 6451 8.692710 ACACACTCGATCTTTTACCAATCTATA 58.307 33.333 0.00 0.00 0.00 1.31
2845 6459 6.474751 GGTACATACACACTCGATCTTTTACC 59.525 42.308 0.00 0.00 0.00 2.85
2851 6465 3.066900 GCAGGTACATACACACTCGATCT 59.933 47.826 0.00 0.00 0.00 2.75
2865 6479 0.973632 AACCGTCTCATGCAGGTACA 59.026 50.000 0.00 0.00 35.68 2.90
2868 6482 0.670546 CGAAACCGTCTCATGCAGGT 60.671 55.000 0.00 0.00 38.88 4.00
2870 6484 1.148310 AACGAAACCGTCTCATGCAG 58.852 50.000 0.00 0.00 39.67 4.41
2880 6494 1.263217 CAAGGGACTGAAACGAAACCG 59.737 52.381 0.00 0.00 40.86 4.44
2891 6505 2.133281 TGGCATCATTCAAGGGACTG 57.867 50.000 0.00 0.00 40.86 3.51
2893 6507 2.482490 GCAATGGCATCATTCAAGGGAC 60.482 50.000 0.00 0.00 41.29 4.46
2894 6508 1.758280 GCAATGGCATCATTCAAGGGA 59.242 47.619 0.00 0.00 41.29 4.20
2895 6509 1.202604 GGCAATGGCATCATTCAAGGG 60.203 52.381 0.00 0.00 41.29 3.95
2896 6510 1.483004 TGGCAATGGCATCATTCAAGG 59.517 47.619 5.05 0.00 41.29 3.61
2897 6511 2.971660 TGGCAATGGCATCATTCAAG 57.028 45.000 5.05 0.00 41.29 3.02
2899 6513 2.112190 ACATGGCAATGGCATCATTCA 58.888 42.857 19.76 0.00 45.69 2.57
2901 6515 4.637276 CAATACATGGCAATGGCATCATT 58.363 39.130 19.76 17.37 45.69 2.57
2902 6516 3.556213 GCAATACATGGCAATGGCATCAT 60.556 43.478 19.76 12.66 45.69 2.45
2903 6517 2.224090 GCAATACATGGCAATGGCATCA 60.224 45.455 19.76 10.88 45.69 3.07
2904 6518 2.224090 TGCAATACATGGCAATGGCATC 60.224 45.455 19.76 8.04 45.69 3.91
2907 6521 2.312722 TTGCAATACATGGCAATGGC 57.687 45.000 5.94 0.00 44.41 4.40
2960 6584 9.739276 TTTCCTGTGTACTGAAATCTGAATTAT 57.261 29.630 0.00 0.00 0.00 1.28
2961 6585 8.999431 GTTTCCTGTGTACTGAAATCTGAATTA 58.001 33.333 0.00 0.00 0.00 1.40
2962 6586 7.502226 TGTTTCCTGTGTACTGAAATCTGAATT 59.498 33.333 0.00 0.00 0.00 2.17
2963 6587 6.998074 TGTTTCCTGTGTACTGAAATCTGAAT 59.002 34.615 0.00 0.00 0.00 2.57
3006 6637 8.618677 CACAAAGTACTATCTACGTATCTTCCA 58.381 37.037 0.00 0.00 0.00 3.53
3007 6638 8.619546 ACACAAAGTACTATCTACGTATCTTCC 58.380 37.037 0.00 0.00 0.00 3.46
3034 6780 9.331282 CAGTTAGAAAAGGAGAAGAGAGAAAAA 57.669 33.333 0.00 0.00 0.00 1.94
3037 6783 6.782988 TCCAGTTAGAAAAGGAGAAGAGAGAA 59.217 38.462 0.00 0.00 0.00 2.87
3039 6785 6.597832 TCCAGTTAGAAAAGGAGAAGAGAG 57.402 41.667 0.00 0.00 0.00 3.20
3046 6792 7.067251 ACGTAGTATCTCCAGTTAGAAAAGGAG 59.933 40.741 0.00 0.00 44.33 3.69
3049 6795 6.472808 GCACGTAGTATCTCCAGTTAGAAAAG 59.527 42.308 0.00 0.00 41.61 2.27
3054 6800 4.817464 AGAGCACGTAGTATCTCCAGTTAG 59.183 45.833 0.00 0.00 41.61 2.34
3055 6801 4.778579 AGAGCACGTAGTATCTCCAGTTA 58.221 43.478 0.00 0.00 41.61 2.24
3065 6811 1.472878 CCTGCAGAAGAGCACGTAGTA 59.527 52.381 17.39 0.00 41.61 1.82
3069 6815 1.181741 TCTCCTGCAGAAGAGCACGT 61.182 55.000 17.39 0.00 40.11 4.49
3070 6816 0.037882 TTCTCCTGCAGAAGAGCACG 60.038 55.000 17.39 0.00 40.11 5.34
3071 6817 1.270518 TGTTCTCCTGCAGAAGAGCAC 60.271 52.381 15.42 14.14 42.13 4.40
3072 6818 1.051008 TGTTCTCCTGCAGAAGAGCA 58.949 50.000 15.42 15.42 42.13 4.26
3073 6819 2.008329 CATGTTCTCCTGCAGAAGAGC 58.992 52.381 17.39 13.31 42.13 4.09
3074 6820 3.331478 ACATGTTCTCCTGCAGAAGAG 57.669 47.619 17.39 14.37 42.13 2.85
3075 6821 3.557898 GGAACATGTTCTCCTGCAGAAGA 60.558 47.826 31.81 7.03 42.13 2.87
3076 6822 2.746362 GGAACATGTTCTCCTGCAGAAG 59.254 50.000 31.81 3.66 42.13 2.85
3077 6823 2.373169 AGGAACATGTTCTCCTGCAGAA 59.627 45.455 31.81 0.00 40.70 3.02
3079 6825 2.486472 AGGAACATGTTCTCCTGCAG 57.514 50.000 31.81 6.78 40.70 4.41
3080 6826 2.906389 ACTAGGAACATGTTCTCCTGCA 59.094 45.455 31.81 12.37 42.25 4.41
3081 6827 3.265791 CACTAGGAACATGTTCTCCTGC 58.734 50.000 31.81 18.23 42.25 4.85
3082 6828 3.369892 CCCACTAGGAACATGTTCTCCTG 60.370 52.174 31.81 21.82 42.25 3.86
3086 6832 2.979678 ACACCCACTAGGAACATGTTCT 59.020 45.455 31.81 21.73 39.45 3.01
3089 6835 2.054799 ACACACCCACTAGGAACATGT 58.945 47.619 0.00 0.00 39.89 3.21
3091 6837 1.351017 CCACACACCCACTAGGAACAT 59.649 52.381 0.00 0.00 39.89 2.71
3096 6842 3.711704 AGATAATCCACACACCCACTAGG 59.288 47.826 0.00 0.00 43.78 3.02
3097 6843 4.405680 TCAGATAATCCACACACCCACTAG 59.594 45.833 0.00 0.00 0.00 2.57
3098 6844 4.358214 TCAGATAATCCACACACCCACTA 58.642 43.478 0.00 0.00 0.00 2.74
3100 6846 3.627395 TCAGATAATCCACACACCCAC 57.373 47.619 0.00 0.00 0.00 4.61
3124 6900 8.630037 TCAGGAAACTTGAAATAAAGGAGAAAC 58.370 33.333 0.00 0.00 40.21 2.78
3125 6901 8.760980 TCAGGAAACTTGAAATAAAGGAGAAA 57.239 30.769 0.00 0.00 40.21 2.52
3145 6921 3.493176 CCACACGCATATTCATCTCAGGA 60.493 47.826 0.00 0.00 0.00 3.86
3151 6927 2.613595 TGCTTCCACACGCATATTCATC 59.386 45.455 0.00 0.00 0.00 2.92
3152 6928 2.642427 TGCTTCCACACGCATATTCAT 58.358 42.857 0.00 0.00 0.00 2.57
3153 6929 2.106477 TGCTTCCACACGCATATTCA 57.894 45.000 0.00 0.00 0.00 2.57
3167 6943 6.763610 ACTGCTAAGTACTTATGGAATGCTTC 59.236 38.462 15.57 0.00 33.79 3.86
3182 6958 2.679336 TGCACGATCGTACTGCTAAGTA 59.321 45.455 22.26 2.31 37.88 2.24
3183 6959 1.471287 TGCACGATCGTACTGCTAAGT 59.529 47.619 22.26 0.00 40.67 2.24
3184 6960 2.188837 TGCACGATCGTACTGCTAAG 57.811 50.000 22.26 7.02 0.00 2.18
3185 6961 2.098443 TCATGCACGATCGTACTGCTAA 59.902 45.455 22.26 6.07 0.00 3.09
3189 6965 4.812862 CATATCATGCACGATCGTACTG 57.187 45.455 22.26 17.41 0.00 2.74
3216 6993 6.604795 AGACCAAGCAGTATATTTGCAATCTT 59.395 34.615 0.00 0.00 43.92 2.40
3237 7017 5.871465 TTTTTGCTTGTTTGGAAAAGACC 57.129 34.783 0.00 0.00 38.21 3.85
3259 7039 7.267857 CAAACCAAGTTCTTCCATTCTTTCTT 58.732 34.615 0.00 0.00 0.00 2.52
3260 7040 6.683861 GCAAACCAAGTTCTTCCATTCTTTCT 60.684 38.462 0.00 0.00 0.00 2.52
3261 7041 5.463392 GCAAACCAAGTTCTTCCATTCTTTC 59.537 40.000 0.00 0.00 0.00 2.62
3262 7042 5.129320 AGCAAACCAAGTTCTTCCATTCTTT 59.871 36.000 0.00 0.00 0.00 2.52
3296 7078 0.391130 TCTGGCACCGTAGAACATGC 60.391 55.000 0.00 0.00 37.35 4.06
3297 7079 1.204704 TCTCTGGCACCGTAGAACATG 59.795 52.381 0.00 0.00 0.00 3.21
3301 7083 1.919240 TCTTCTCTGGCACCGTAGAA 58.081 50.000 4.14 4.14 0.00 2.10
3302 7084 1.544691 GTTCTTCTCTGGCACCGTAGA 59.455 52.381 0.00 0.00 0.00 2.59
3303 7085 1.272490 TGTTCTTCTCTGGCACCGTAG 59.728 52.381 0.00 0.00 0.00 3.51
3304 7086 1.334160 TGTTCTTCTCTGGCACCGTA 58.666 50.000 0.00 0.00 0.00 4.02
3306 7088 1.081892 CATGTTCTTCTCTGGCACCG 58.918 55.000 0.00 0.00 0.00 4.94
3310 7092 2.289945 ACACCTCATGTTCTTCTCTGGC 60.290 50.000 0.00 0.00 38.98 4.85
3311 7093 3.332919 CACACCTCATGTTCTTCTCTGG 58.667 50.000 0.00 0.00 40.64 3.86
3313 7095 2.975489 ACCACACCTCATGTTCTTCTCT 59.025 45.455 0.00 0.00 40.64 3.10
3317 7099 1.202927 CCCACCACACCTCATGTTCTT 60.203 52.381 0.00 0.00 40.64 2.52
3318 7100 0.401738 CCCACCACACCTCATGTTCT 59.598 55.000 0.00 0.00 40.64 3.01
3319 7101 0.609131 CCCCACCACACCTCATGTTC 60.609 60.000 0.00 0.00 40.64 3.18
3320 7102 1.360393 ACCCCACCACACCTCATGTT 61.360 55.000 0.00 0.00 40.64 2.71
3368 7180 0.680061 CCTCCTATGGCCTTACCGTC 59.320 60.000 3.32 0.00 43.94 4.79
3370 7182 0.763223 ACCCTCCTATGGCCTTACCG 60.763 60.000 3.32 0.00 43.94 4.02
3460 7298 0.533308 CCGTTTCCTTTCCACGACCA 60.533 55.000 0.00 0.00 35.93 4.02
3472 7310 3.022406 TCTTCTACCTCTAGCCGTTTCC 58.978 50.000 0.00 0.00 0.00 3.13
3497 7335 1.472480 GAACAATGGACGGTTGGATGG 59.528 52.381 0.00 0.00 0.00 3.51
3514 7352 4.766404 AAATCTGAACGGTTGGATGAAC 57.234 40.909 0.00 0.00 0.00 3.18
3525 7363 1.798223 TGCCAGTCGAAAATCTGAACG 59.202 47.619 2.52 0.00 34.02 3.95
3543 7381 3.245990 GTGCATGAAAAGAAACCAAGTGC 59.754 43.478 0.00 0.00 0.00 4.40
3549 7387 3.305608 CCTCAGGTGCATGAAAAGAAACC 60.306 47.826 0.00 0.00 0.00 3.27
3563 7401 2.183679 GGCCTATCTATCCCTCAGGTG 58.816 57.143 0.00 0.00 0.00 4.00
3587 7425 1.296715 CCATATGTAGAGGCCCGCC 59.703 63.158 0.00 0.00 0.00 6.13
3596 7434 7.598278 ACTTCGAGAAGATAAGCCATATGTAG 58.402 38.462 18.54 0.00 40.79 2.74
3599 7437 8.818141 TTTACTTCGAGAAGATAAGCCATATG 57.182 34.615 18.54 0.00 40.79 1.78
3652 7496 3.603158 ACAGAACATGCATACGTACCA 57.397 42.857 0.00 0.00 0.00 3.25
3658 7502 2.416547 ACGCAGAACAGAACATGCATAC 59.583 45.455 0.00 0.00 38.60 2.39
3671 7515 0.874607 AAGTGGACGTGACGCAGAAC 60.875 55.000 4.25 0.00 0.00 3.01
3678 7522 1.527311 GAGCTTTGAAGTGGACGTGAC 59.473 52.381 0.00 0.00 0.00 3.67
3679 7523 1.865865 GAGCTTTGAAGTGGACGTGA 58.134 50.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.