Multiple sequence alignment - TraesCS2A01G381400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G381400 chr2A 100.000 4536 0 0 1 4536 624945012 624940477 0.000000e+00 8377.0
1 TraesCS2A01G381400 chr2A 83.986 2935 397 36 762 3665 624968172 624965280 0.000000e+00 2748.0
2 TraesCS2A01G381400 chr2A 86.076 1659 207 12 2007 3649 711467151 711465501 0.000000e+00 1762.0
3 TraesCS2A01G381400 chr2A 82.314 1210 194 16 776 1969 711468359 711467154 0.000000e+00 1031.0
4 TraesCS2A01G381400 chr2A 89.542 153 9 4 51 198 722721491 722721641 2.150000e-43 187.0
5 TraesCS2A01G381400 chr2D 92.813 3590 210 17 928 4496 482351113 482347551 0.000000e+00 5156.0
6 TraesCS2A01G381400 chr2D 84.676 2943 384 33 762 3675 482382768 482379864 0.000000e+00 2874.0
7 TraesCS2A01G381400 chr2D 87.130 1655 194 10 2007 3649 572256489 572254842 0.000000e+00 1858.0
8 TraesCS2A01G381400 chr2D 86.842 1330 166 6 2291 3615 626593949 626592624 0.000000e+00 1478.0
9 TraesCS2A01G381400 chr2D 82.708 1093 175 10 889 1969 572257582 572256492 0.000000e+00 959.0
10 TraesCS2A01G381400 chr2D 76.733 1298 251 29 958 2236 626595311 626594046 0.000000e+00 676.0
11 TraesCS2A01G381400 chr2D 88.194 432 27 7 199 622 482357445 482357030 1.130000e-135 494.0
12 TraesCS2A01G381400 chr2D 94.643 56 3 0 875 930 482351469 482351414 2.250000e-13 87.9
13 TraesCS2A01G381400 chr2D 90.625 64 3 1 4473 4536 482347544 482347484 1.050000e-11 82.4
14 TraesCS2A01G381400 chr2B 93.087 2546 127 11 1971 4496 566391507 566388991 0.000000e+00 3681.0
15 TraesCS2A01G381400 chr2B 84.291 2820 379 35 779 3562 566403665 566400874 0.000000e+00 2695.0
16 TraesCS2A01G381400 chr2B 93.172 1406 84 10 553 1951 566392960 566391560 0.000000e+00 2054.0
17 TraesCS2A01G381400 chr2B 86.707 1655 202 8 2007 3649 687206751 687205103 0.000000e+00 1821.0
18 TraesCS2A01G381400 chr2B 76.703 1292 259 27 958 2236 768060342 768059080 0.000000e+00 680.0
19 TraesCS2A01G381400 chr2B 89.968 309 24 4 199 501 566393268 566392961 4.250000e-105 392.0
20 TraesCS2A01G381400 chr5D 94.000 150 7 2 50 198 474212432 474212284 4.570000e-55 226.0
21 TraesCS2A01G381400 chr5D 90.541 148 9 2 53 196 391853126 391853272 1.670000e-44 191.0
22 TraesCS2A01G381400 chr5D 88.591 149 14 3 51 198 558575973 558575827 1.300000e-40 178.0
23 TraesCS2A01G381400 chr3A 90.541 148 9 2 54 197 714112587 714112441 1.670000e-44 191.0
24 TraesCS2A01G381400 chr1A 89.474 152 11 3 50 197 191864665 191864815 2.150000e-43 187.0
25 TraesCS2A01G381400 chr1D 88.079 151 13 2 51 197 486703771 486703920 1.680000e-39 174.0
26 TraesCS2A01G381400 chr3B 88.194 144 14 3 52 195 3403111 3403251 7.800000e-38 169.0
27 TraesCS2A01G381400 chr1B 87.248 149 14 3 49 196 636769101 636769245 1.010000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G381400 chr2A 624940477 624945012 4535 True 8377.000000 8377 100.000000 1 4536 1 chr2A.!!$R1 4535
1 TraesCS2A01G381400 chr2A 624965280 624968172 2892 True 2748.000000 2748 83.986000 762 3665 1 chr2A.!!$R2 2903
2 TraesCS2A01G381400 chr2A 711465501 711468359 2858 True 1396.500000 1762 84.195000 776 3649 2 chr2A.!!$R3 2873
3 TraesCS2A01G381400 chr2D 482379864 482382768 2904 True 2874.000000 2874 84.676000 762 3675 1 chr2D.!!$R2 2913
4 TraesCS2A01G381400 chr2D 482347484 482351469 3985 True 1775.433333 5156 92.693667 875 4536 3 chr2D.!!$R3 3661
5 TraesCS2A01G381400 chr2D 572254842 572257582 2740 True 1408.500000 1858 84.919000 889 3649 2 chr2D.!!$R4 2760
6 TraesCS2A01G381400 chr2D 626592624 626595311 2687 True 1077.000000 1478 81.787500 958 3615 2 chr2D.!!$R5 2657
7 TraesCS2A01G381400 chr2B 566400874 566403665 2791 True 2695.000000 2695 84.291000 779 3562 1 chr2B.!!$R1 2783
8 TraesCS2A01G381400 chr2B 566388991 566393268 4277 True 2042.333333 3681 92.075667 199 4496 3 chr2B.!!$R4 4297
9 TraesCS2A01G381400 chr2B 687205103 687206751 1648 True 1821.000000 1821 86.707000 2007 3649 1 chr2B.!!$R2 1642
10 TraesCS2A01G381400 chr2B 768059080 768060342 1262 True 680.000000 680 76.703000 958 2236 1 chr2B.!!$R3 1278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.035820 TGAAAAATAGCGTCGGGCCT 60.036 50.0 0.84 0.0 45.17 5.19 F
127 128 0.098200 GGGTTATTTGCGAAGGCGAC 59.902 55.0 0.00 0.0 44.10 5.19 F
508 515 0.100503 GTGCTCTCGCCTCTCTCTTC 59.899 60.0 0.00 0.0 34.43 2.87 F
1246 1580 0.443869 CATTTCCTTGACTCGTGGCG 59.556 55.0 0.00 0.0 0.00 5.69 F
2550 2990 0.889994 ATACGTGCCACCGACAACTA 59.110 50.0 0.00 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1675 0.756070 GGTAGAGGGAGGAAGGTCGG 60.756 65.0 0.0 0.00 0.00 4.79 R
2025 2414 6.869695 TGCATTCATTAACATCTGCAGAAAT 58.130 32.0 22.5 12.95 34.92 2.17 R
2435 2875 2.489938 TGCTGGCGAAAATACTCCTT 57.510 45.0 0.0 0.00 0.00 3.36 R
2662 3105 2.879103 TCTCTTGGCCGAATTCCTTT 57.121 45.0 0.0 0.00 0.00 3.11 R
4341 4805 0.251916 CTCCATTAACAGGCCGTGGA 59.748 55.0 0.0 5.05 37.41 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.855689 AATTGACCAATTCTCCGCTTG 57.144 42.857 2.38 0.00 36.34 4.01
23 24 2.270352 TTGACCAATTCTCCGCTTGT 57.730 45.000 0.00 0.00 0.00 3.16
24 25 2.270352 TGACCAATTCTCCGCTTGTT 57.730 45.000 0.00 0.00 0.00 2.83
25 26 2.582052 TGACCAATTCTCCGCTTGTTT 58.418 42.857 0.00 0.00 0.00 2.83
26 27 2.293122 TGACCAATTCTCCGCTTGTTTG 59.707 45.455 0.00 0.00 0.00 2.93
27 28 2.293399 GACCAATTCTCCGCTTGTTTGT 59.707 45.455 0.00 0.00 0.00 2.83
28 29 2.693074 ACCAATTCTCCGCTTGTTTGTT 59.307 40.909 0.00 0.00 0.00 2.83
29 30 3.132111 ACCAATTCTCCGCTTGTTTGTTT 59.868 39.130 0.00 0.00 0.00 2.83
30 31 3.490526 CCAATTCTCCGCTTGTTTGTTTG 59.509 43.478 0.00 0.00 0.00 2.93
31 32 4.111916 CAATTCTCCGCTTGTTTGTTTGT 58.888 39.130 0.00 0.00 0.00 2.83
32 33 3.859411 TTCTCCGCTTGTTTGTTTGTT 57.141 38.095 0.00 0.00 0.00 2.83
33 34 3.859411 TCTCCGCTTGTTTGTTTGTTT 57.141 38.095 0.00 0.00 0.00 2.83
34 35 3.765026 TCTCCGCTTGTTTGTTTGTTTC 58.235 40.909 0.00 0.00 0.00 2.78
35 36 3.442273 TCTCCGCTTGTTTGTTTGTTTCT 59.558 39.130 0.00 0.00 0.00 2.52
36 37 4.082463 TCTCCGCTTGTTTGTTTGTTTCTT 60.082 37.500 0.00 0.00 0.00 2.52
37 38 4.170256 TCCGCTTGTTTGTTTGTTTCTTC 58.830 39.130 0.00 0.00 0.00 2.87
38 39 3.001168 CCGCTTGTTTGTTTGTTTCTTCG 60.001 43.478 0.00 0.00 0.00 3.79
39 40 3.849145 CGCTTGTTTGTTTGTTTCTTCGA 59.151 39.130 0.00 0.00 0.00 3.71
40 41 4.028509 CGCTTGTTTGTTTGTTTCTTCGAG 60.029 41.667 0.00 0.00 0.00 4.04
41 42 4.265320 GCTTGTTTGTTTGTTTCTTCGAGG 59.735 41.667 0.00 0.00 0.00 4.63
42 43 4.364415 TGTTTGTTTGTTTCTTCGAGGG 57.636 40.909 0.00 0.00 0.00 4.30
43 44 4.011023 TGTTTGTTTGTTTCTTCGAGGGA 58.989 39.130 0.00 0.00 0.00 4.20
44 45 4.459685 TGTTTGTTTGTTTCTTCGAGGGAA 59.540 37.500 0.00 0.00 0.00 3.97
45 46 4.625972 TTGTTTGTTTCTTCGAGGGAAC 57.374 40.909 11.64 11.64 0.00 3.62
66 67 7.894847 GGAACCAATCAATGTTTTAAATAGCG 58.105 34.615 0.00 0.00 0.00 4.26
67 68 7.010091 GGAACCAATCAATGTTTTAAATAGCGG 59.990 37.037 0.00 0.00 0.00 5.52
68 69 6.337356 ACCAATCAATGTTTTAAATAGCGGG 58.663 36.000 0.00 0.00 0.00 6.13
69 70 5.234116 CCAATCAATGTTTTAAATAGCGGGC 59.766 40.000 0.00 0.00 0.00 6.13
70 71 5.852282 ATCAATGTTTTAAATAGCGGGCT 57.148 34.783 0.00 0.00 0.00 5.19
71 72 6.952773 ATCAATGTTTTAAATAGCGGGCTA 57.047 33.333 2.42 2.42 0.00 3.93
72 73 6.952773 TCAATGTTTTAAATAGCGGGCTAT 57.047 33.333 7.36 7.36 40.63 2.97
73 74 6.734137 TCAATGTTTTAAATAGCGGGCTATG 58.266 36.000 13.53 0.00 39.03 2.23
74 75 6.544197 TCAATGTTTTAAATAGCGGGCTATGA 59.456 34.615 13.53 3.16 39.03 2.15
75 76 6.952773 ATGTTTTAAATAGCGGGCTATGAA 57.047 33.333 13.53 8.61 39.03 2.57
76 77 6.761099 TGTTTTAAATAGCGGGCTATGAAA 57.239 33.333 13.53 13.27 39.03 2.69
77 78 7.159322 TGTTTTAAATAGCGGGCTATGAAAA 57.841 32.000 19.53 19.53 39.03 2.29
78 79 7.603651 TGTTTTAAATAGCGGGCTATGAAAAA 58.396 30.769 22.38 20.82 39.03 1.94
79 80 8.254508 TGTTTTAAATAGCGGGCTATGAAAAAT 58.745 29.630 22.38 5.40 39.03 1.82
80 81 9.738832 GTTTTAAATAGCGGGCTATGAAAAATA 57.261 29.630 22.38 9.67 39.03 1.40
81 82 9.959749 TTTTAAATAGCGGGCTATGAAAAATAG 57.040 29.630 20.37 0.00 39.03 1.73
82 83 5.629079 AATAGCGGGCTATGAAAAATAGC 57.371 39.130 13.53 8.52 44.56 2.97
83 84 1.873591 AGCGGGCTATGAAAAATAGCG 59.126 47.619 10.37 0.97 45.83 4.26
84 85 1.602377 GCGGGCTATGAAAAATAGCGT 59.398 47.619 10.37 0.00 45.83 5.07
85 86 2.349532 GCGGGCTATGAAAAATAGCGTC 60.350 50.000 10.37 5.61 45.83 5.19
86 87 2.096909 CGGGCTATGAAAAATAGCGTCG 60.097 50.000 10.37 12.01 45.83 5.12
87 88 2.223377 GGGCTATGAAAAATAGCGTCGG 59.777 50.000 10.37 0.00 45.83 4.79
88 89 2.223377 GGCTATGAAAAATAGCGTCGGG 59.777 50.000 10.37 0.00 45.83 5.14
89 90 2.349532 GCTATGAAAAATAGCGTCGGGC 60.350 50.000 1.86 0.00 37.79 6.13
90 91 1.021968 ATGAAAAATAGCGTCGGGCC 58.978 50.000 0.00 0.00 45.17 5.80
91 92 0.035820 TGAAAAATAGCGTCGGGCCT 60.036 50.000 0.84 0.00 45.17 5.19
92 93 0.656259 GAAAAATAGCGTCGGGCCTC 59.344 55.000 0.84 0.00 45.17 4.70
93 94 0.746923 AAAAATAGCGTCGGGCCTCC 60.747 55.000 0.84 0.00 45.17 4.30
94 95 1.906105 AAAATAGCGTCGGGCCTCCA 61.906 55.000 0.84 0.00 45.17 3.86
95 96 1.906105 AAATAGCGTCGGGCCTCCAA 61.906 55.000 0.84 0.00 45.17 3.53
96 97 1.906105 AATAGCGTCGGGCCTCCAAA 61.906 55.000 0.84 0.00 45.17 3.28
97 98 1.696097 ATAGCGTCGGGCCTCCAAAT 61.696 55.000 0.84 0.00 45.17 2.32
98 99 2.306255 TAGCGTCGGGCCTCCAAATC 62.306 60.000 0.84 0.00 45.17 2.17
99 100 2.267642 CGTCGGGCCTCCAAATCA 59.732 61.111 0.84 0.00 0.00 2.57
100 101 1.815421 CGTCGGGCCTCCAAATCAG 60.815 63.158 0.84 0.00 0.00 2.90
101 102 2.115291 GTCGGGCCTCCAAATCAGC 61.115 63.158 0.84 0.00 0.00 4.26
102 103 2.273449 CGGGCCTCCAAATCAGCT 59.727 61.111 0.84 0.00 0.00 4.24
103 104 0.980754 TCGGGCCTCCAAATCAGCTA 60.981 55.000 0.84 0.00 0.00 3.32
104 105 0.109342 CGGGCCTCCAAATCAGCTAT 59.891 55.000 0.84 0.00 0.00 2.97
105 106 1.347707 CGGGCCTCCAAATCAGCTATA 59.652 52.381 0.84 0.00 0.00 1.31
106 107 2.613977 CGGGCCTCCAAATCAGCTATAG 60.614 54.545 0.84 0.00 0.00 1.31
107 108 2.431454 GGCCTCCAAATCAGCTATAGC 58.569 52.381 17.33 17.33 42.49 2.97
119 120 2.875080 GCTATAGCGGGTTATTTGCG 57.125 50.000 9.40 0.00 0.00 4.85
120 121 2.409975 GCTATAGCGGGTTATTTGCGA 58.590 47.619 9.40 0.00 0.00 5.10
121 122 2.803956 GCTATAGCGGGTTATTTGCGAA 59.196 45.455 9.40 0.00 0.00 4.70
122 123 3.120649 GCTATAGCGGGTTATTTGCGAAG 60.121 47.826 9.40 0.00 0.00 3.79
123 124 1.658994 TAGCGGGTTATTTGCGAAGG 58.341 50.000 0.00 0.00 0.00 3.46
124 125 1.226575 GCGGGTTATTTGCGAAGGC 60.227 57.895 0.00 0.00 40.52 4.35
125 126 1.061887 CGGGTTATTTGCGAAGGCG 59.938 57.895 0.00 0.00 44.10 5.52
126 127 1.363145 CGGGTTATTTGCGAAGGCGA 61.363 55.000 0.00 0.00 44.10 5.54
127 128 0.098200 GGGTTATTTGCGAAGGCGAC 59.902 55.000 0.00 0.00 44.10 5.19
128 129 0.098200 GGTTATTTGCGAAGGCGACC 59.902 55.000 0.00 0.00 44.10 4.79
129 130 0.800012 GTTATTTGCGAAGGCGACCA 59.200 50.000 0.00 0.00 44.10 4.02
130 131 1.400494 GTTATTTGCGAAGGCGACCAT 59.600 47.619 0.00 0.00 44.10 3.55
131 132 1.745232 TATTTGCGAAGGCGACCATT 58.255 45.000 0.00 0.00 44.10 3.16
132 133 0.887933 ATTTGCGAAGGCGACCATTT 59.112 45.000 0.00 0.00 44.10 2.32
133 134 1.524848 TTTGCGAAGGCGACCATTTA 58.475 45.000 0.00 0.00 44.10 1.40
134 135 1.083489 TTGCGAAGGCGACCATTTAG 58.917 50.000 0.00 0.00 44.10 1.85
135 136 1.352056 GCGAAGGCGACCATTTAGC 59.648 57.895 0.00 0.00 40.82 3.09
136 137 1.636340 CGAAGGCGACCATTTAGCG 59.364 57.895 0.00 0.00 40.82 4.26
137 138 1.762222 CGAAGGCGACCATTTAGCGG 61.762 60.000 0.00 0.00 40.82 5.52
138 139 1.436983 GAAGGCGACCATTTAGCGGG 61.437 60.000 0.00 0.00 0.00 6.13
139 140 3.583086 GGCGACCATTTAGCGGGC 61.583 66.667 0.00 0.00 0.00 6.13
140 141 2.822255 GCGACCATTTAGCGGGCA 60.822 61.111 0.00 0.00 0.00 5.36
141 142 2.186826 GCGACCATTTAGCGGGCAT 61.187 57.895 0.00 0.00 0.00 4.40
142 143 1.941812 CGACCATTTAGCGGGCATC 59.058 57.895 0.00 0.00 0.00 3.91
143 144 1.507141 CGACCATTTAGCGGGCATCC 61.507 60.000 0.00 0.00 0.00 3.51
144 145 0.179018 GACCATTTAGCGGGCATCCT 60.179 55.000 0.00 0.00 0.00 3.24
145 146 0.466189 ACCATTTAGCGGGCATCCTG 60.466 55.000 0.00 0.00 0.00 3.86
154 155 0.740737 CGGGCATCCTGCTAAAAAGG 59.259 55.000 0.00 0.00 44.28 3.11
155 156 0.461548 GGGCATCCTGCTAAAAAGGC 59.538 55.000 0.00 0.00 44.28 4.35
156 157 1.478631 GGCATCCTGCTAAAAAGGCT 58.521 50.000 0.00 0.00 44.28 4.58
157 158 2.654863 GGCATCCTGCTAAAAAGGCTA 58.345 47.619 0.00 0.00 44.28 3.93
158 159 3.225940 GGCATCCTGCTAAAAAGGCTAT 58.774 45.455 0.00 0.00 44.28 2.97
159 160 4.398319 GGCATCCTGCTAAAAAGGCTATA 58.602 43.478 0.00 0.00 44.28 1.31
160 161 4.457257 GGCATCCTGCTAAAAAGGCTATAG 59.543 45.833 0.00 0.00 44.28 1.31
161 162 4.083057 GCATCCTGCTAAAAAGGCTATAGC 60.083 45.833 16.78 16.78 40.96 2.97
162 163 3.728845 TCCTGCTAAAAAGGCTATAGCG 58.271 45.455 18.30 4.04 43.86 4.26
163 164 2.808543 CCTGCTAAAAAGGCTATAGCGG 59.191 50.000 18.30 20.45 43.86 5.52
164 165 2.808543 CTGCTAAAAAGGCTATAGCGGG 59.191 50.000 18.30 12.74 43.86 6.13
165 166 1.535896 GCTAAAAAGGCTATAGCGGGC 59.464 52.381 18.30 5.04 43.26 6.13
166 167 2.810767 GCTAAAAAGGCTATAGCGGGCT 60.811 50.000 18.30 7.37 43.26 5.19
167 168 3.556423 GCTAAAAAGGCTATAGCGGGCTA 60.556 47.826 18.30 2.42 43.26 3.93
168 169 3.790089 AAAAAGGCTATAGCGGGCTAT 57.210 42.857 18.30 16.61 43.26 2.97
169 170 4.903045 AAAAAGGCTATAGCGGGCTATA 57.097 40.909 18.30 17.02 43.26 1.31
175 176 3.992260 CTATAGCGGGCTATAGCGAAT 57.008 47.619 26.16 9.28 46.26 3.34
177 178 3.992260 ATAGCGGGCTATAGCGAATAG 57.008 47.619 18.30 8.55 43.26 1.73
193 194 6.283161 GCGAATAGCCGTCTATTTAAAACT 57.717 37.500 0.00 0.00 43.55 2.66
194 195 7.398834 GCGAATAGCCGTCTATTTAAAACTA 57.601 36.000 0.00 0.00 43.55 2.24
195 196 8.015409 GCGAATAGCCGTCTATTTAAAACTAT 57.985 34.615 0.00 0.00 43.55 2.12
196 197 7.950496 GCGAATAGCCGTCTATTTAAAACTATG 59.050 37.037 0.00 0.00 43.55 2.23
197 198 9.188588 CGAATAGCCGTCTATTTAAAACTATGA 57.811 33.333 0.00 0.00 43.55 2.15
232 233 6.687105 CCGTTTGTTAAAAGAAAGAGTCACAG 59.313 38.462 0.00 0.00 0.00 3.66
254 255 4.284234 AGATGTTTCTTTGTTGGGGGAATG 59.716 41.667 0.00 0.00 0.00 2.67
312 313 2.599082 GTCTGCTCCGTTTAATCTCACG 59.401 50.000 0.00 0.00 36.12 4.35
316 317 2.810650 CTCCGTTTAATCTCACGAGGG 58.189 52.381 0.00 0.00 38.76 4.30
326 327 1.201647 TCTCACGAGGGAAATGACGAC 59.798 52.381 0.00 0.00 0.00 4.34
328 329 1.445582 ACGAGGGAAATGACGACGC 60.446 57.895 0.00 0.00 0.00 5.19
340 341 1.940883 GACGACGCCTACCATGTGGA 61.941 60.000 5.96 0.00 38.94 4.02
341 342 1.226974 CGACGCCTACCATGTGGAG 60.227 63.158 5.96 0.00 38.94 3.86
370 371 5.181245 TGCTGTGCTTAATTTGACTAGTTCC 59.819 40.000 0.00 0.00 0.00 3.62
394 395 0.808847 GGATCGGCAGTTAACGTCCC 60.809 60.000 11.80 7.58 0.00 4.46
402 403 0.810016 AGTTAACGTCCCGAGCTCTC 59.190 55.000 12.85 0.00 0.00 3.20
414 415 3.072211 CCGAGCTCTCCGTGTGTATATA 58.928 50.000 12.85 0.00 0.00 0.86
415 416 3.120269 CCGAGCTCTCCGTGTGTATATAC 60.120 52.174 12.85 5.89 0.00 1.47
417 418 4.154375 CGAGCTCTCCGTGTGTATATACAT 59.846 45.833 18.27 0.00 38.63 2.29
419 420 6.455780 CGAGCTCTCCGTGTGTATATACATAG 60.456 46.154 18.27 12.11 38.63 2.23
421 422 6.940867 AGCTCTCCGTGTGTATATACATAGAA 59.059 38.462 18.27 3.14 38.63 2.10
423 424 8.244802 GCTCTCCGTGTGTATATACATAGAAAT 58.755 37.037 18.27 0.00 38.63 2.17
435 439 6.699575 ATACATAGAAATTCCAGGTGTTGC 57.300 37.500 0.00 0.00 0.00 4.17
482 489 0.519077 CGGAAGCAAGCTCCAAACTC 59.481 55.000 0.00 0.00 0.00 3.01
501 508 0.872021 CGTATTGGTGCTCTCGCCTC 60.872 60.000 0.00 0.00 43.26 4.70
502 509 0.461961 GTATTGGTGCTCTCGCCTCT 59.538 55.000 0.00 0.00 43.26 3.69
503 510 0.747255 TATTGGTGCTCTCGCCTCTC 59.253 55.000 0.00 0.00 43.26 3.20
504 511 0.975040 ATTGGTGCTCTCGCCTCTCT 60.975 55.000 0.00 0.00 43.26 3.10
505 512 1.599606 TTGGTGCTCTCGCCTCTCTC 61.600 60.000 0.00 0.00 43.26 3.20
506 513 1.752694 GGTGCTCTCGCCTCTCTCT 60.753 63.158 0.00 0.00 39.75 3.10
507 514 1.319614 GGTGCTCTCGCCTCTCTCTT 61.320 60.000 0.00 0.00 39.75 2.85
508 515 0.100503 GTGCTCTCGCCTCTCTCTTC 59.899 60.000 0.00 0.00 34.43 2.87
509 516 1.034838 TGCTCTCGCCTCTCTCTTCC 61.035 60.000 0.00 0.00 34.43 3.46
510 517 0.751643 GCTCTCGCCTCTCTCTTCCT 60.752 60.000 0.00 0.00 0.00 3.36
511 518 1.024271 CTCTCGCCTCTCTCTTCCTG 58.976 60.000 0.00 0.00 0.00 3.86
512 519 0.621082 TCTCGCCTCTCTCTTCCTGA 59.379 55.000 0.00 0.00 0.00 3.86
513 520 1.004862 TCTCGCCTCTCTCTTCCTGAA 59.995 52.381 0.00 0.00 0.00 3.02
514 521 1.405105 CTCGCCTCTCTCTTCCTGAAG 59.595 57.143 0.31 0.31 39.71 3.02
515 522 1.004862 TCGCCTCTCTCTTCCTGAAGA 59.995 52.381 9.14 9.14 44.47 2.87
516 523 1.821753 CGCCTCTCTCTTCCTGAAGAA 59.178 52.381 10.57 2.45 45.75 2.52
528 535 6.665474 CTTCCTGAAGAAGTGAAGATCATG 57.335 41.667 0.45 0.00 45.99 3.07
529 536 6.364568 TTCCTGAAGAAGTGAAGATCATGA 57.635 37.500 0.00 0.00 0.00 3.07
530 537 6.364568 TCCTGAAGAAGTGAAGATCATGAA 57.635 37.500 0.00 0.00 0.00 2.57
531 538 6.404708 TCCTGAAGAAGTGAAGATCATGAAG 58.595 40.000 0.00 0.00 0.00 3.02
532 539 5.064962 CCTGAAGAAGTGAAGATCATGAAGC 59.935 44.000 0.00 0.00 0.00 3.86
533 540 5.554070 TGAAGAAGTGAAGATCATGAAGCA 58.446 37.500 0.00 0.00 0.00 3.91
534 541 5.999600 TGAAGAAGTGAAGATCATGAAGCAA 59.000 36.000 0.00 0.00 0.00 3.91
535 542 6.487668 TGAAGAAGTGAAGATCATGAAGCAAA 59.512 34.615 0.00 0.00 0.00 3.68
536 543 6.889301 AGAAGTGAAGATCATGAAGCAAAA 57.111 33.333 0.00 0.00 0.00 2.44
537 544 6.675987 AGAAGTGAAGATCATGAAGCAAAAC 58.324 36.000 0.00 0.00 0.00 2.43
538 545 6.489361 AGAAGTGAAGATCATGAAGCAAAACT 59.511 34.615 0.00 0.00 0.00 2.66
539 546 7.663081 AGAAGTGAAGATCATGAAGCAAAACTA 59.337 33.333 0.00 0.00 0.00 2.24
540 547 7.750229 AGTGAAGATCATGAAGCAAAACTAA 57.250 32.000 0.00 0.00 0.00 2.24
541 548 8.169977 AGTGAAGATCATGAAGCAAAACTAAA 57.830 30.769 0.00 0.00 0.00 1.85
542 549 8.800332 AGTGAAGATCATGAAGCAAAACTAAAT 58.200 29.630 0.00 0.00 0.00 1.40
543 550 8.857216 GTGAAGATCATGAAGCAAAACTAAATG 58.143 33.333 0.00 0.00 0.00 2.32
544 551 7.543172 TGAAGATCATGAAGCAAAACTAAATGC 59.457 33.333 0.00 0.00 42.87 3.56
545 552 6.335777 AGATCATGAAGCAAAACTAAATGCC 58.664 36.000 0.00 0.00 43.57 4.40
546 553 5.726980 TCATGAAGCAAAACTAAATGCCT 57.273 34.783 0.00 0.00 43.57 4.75
547 554 5.713025 TCATGAAGCAAAACTAAATGCCTC 58.287 37.500 0.00 0.00 43.57 4.70
548 555 4.159377 TGAAGCAAAACTAAATGCCTCG 57.841 40.909 0.00 0.00 43.57 4.63
549 556 3.818210 TGAAGCAAAACTAAATGCCTCGA 59.182 39.130 0.00 0.00 43.57 4.04
550 557 4.083324 TGAAGCAAAACTAAATGCCTCGAG 60.083 41.667 5.13 5.13 43.57 4.04
551 558 3.674997 AGCAAAACTAAATGCCTCGAGA 58.325 40.909 15.71 0.00 43.57 4.04
623 630 2.614057 CAAGCTTCCAGTTCGTGTTTCT 59.386 45.455 0.00 0.00 0.00 2.52
631 638 5.227908 TCCAGTTCGTGTTTCTGACTTATC 58.772 41.667 0.00 0.00 0.00 1.75
633 640 5.119279 CCAGTTCGTGTTTCTGACTTATCTG 59.881 44.000 0.00 0.00 0.00 2.90
643 650 4.293494 TCTGACTTATCTGAAGCCTGGAT 58.707 43.478 0.00 0.00 30.48 3.41
659 666 4.378774 CCTGGATGCTAAGAACATGAGAG 58.621 47.826 0.00 0.00 0.00 3.20
667 674 3.616956 AAGAACATGAGAGGAATCGCA 57.383 42.857 0.00 0.00 0.00 5.10
695 703 6.329496 CCATCTAACGGCAAACAACAAATAT 58.671 36.000 0.00 0.00 0.00 1.28
728 736 1.244019 ATTCTCCGCCCTTGTGTTGC 61.244 55.000 0.00 0.00 0.00 4.17
747 755 1.666311 GCGACCTGTGACTGTGAGTAC 60.666 57.143 0.00 0.00 0.00 2.73
757 765 3.120792 GACTGTGAGTACGTTGCTGAAA 58.879 45.455 0.00 0.00 0.00 2.69
860 872 8.707796 TCCTTTCTGTTATCTTCGGATACTAT 57.292 34.615 0.00 0.00 36.74 2.12
934 951 3.513515 GGCCTCCATTTTTCATACAACCA 59.486 43.478 0.00 0.00 0.00 3.67
970 1301 5.886960 ATGAAAGGATTAGTTGACAGTGC 57.113 39.130 0.00 0.00 0.00 4.40
984 1315 4.869215 TGACAGTGCCATGTTTATTTGTG 58.131 39.130 0.00 0.00 32.25 3.33
1092 1426 2.912956 TCCTAGTTCAGATTGCCCAAGT 59.087 45.455 0.00 0.00 0.00 3.16
1241 1575 1.734465 GCTGGACATTTCCTTGACTCG 59.266 52.381 0.00 0.00 43.31 4.18
1246 1580 0.443869 CATTTCCTTGACTCGTGGCG 59.556 55.000 0.00 0.00 0.00 5.69
1263 1597 3.195698 GCGATCCGGGTGCTCAAC 61.196 66.667 0.00 0.00 0.00 3.18
1338 1675 1.763634 GTTACGACGGCTATGTAGGC 58.236 55.000 0.00 3.69 44.57 3.93
1650 1987 1.236616 CGGCATTCAGGTTCAGCACA 61.237 55.000 0.00 0.00 0.00 4.57
1769 2106 5.189928 TGCAAAACAGAATATGACCGGTAT 58.810 37.500 7.34 4.32 0.00 2.73
2088 2477 5.220989 CCTTCAGATGGCTATTGTCACAATG 60.221 44.000 13.65 4.62 0.00 2.82
2119 2508 1.031235 TACCGGTGTTCTTGTCGACA 58.969 50.000 19.93 15.76 0.00 4.35
2414 2854 3.492313 GGACAGATGACAATTCAAACGC 58.508 45.455 0.00 0.00 34.61 4.84
2550 2990 0.889994 ATACGTGCCACCGACAACTA 59.110 50.000 0.00 0.00 0.00 2.24
2662 3105 5.108517 GCAGTGGTTGATGAAAGACAAAAA 58.891 37.500 0.00 0.00 0.00 1.94
2750 3193 3.020984 GGTTGTTGTCTTGAGGTGGAAA 58.979 45.455 0.00 0.00 0.00 3.13
2824 3267 2.496871 CCATGGCAAGAACCAAGCATTA 59.503 45.455 0.00 0.00 44.65 1.90
3061 3504 0.036671 GTGGTTACCTTGACCCCGAG 60.037 60.000 2.07 0.00 36.30 4.63
3202 3645 4.039488 AGCTTGGCATTGATTTTCTTGTCA 59.961 37.500 0.00 0.00 0.00 3.58
3205 3648 3.256558 GGCATTGATTTTCTTGTCAGCC 58.743 45.455 0.00 0.00 31.34 4.85
3343 3786 7.987458 GGTGACAATAGACCATCTATGAAAGAA 59.013 37.037 0.00 0.00 38.66 2.52
3398 3841 0.632835 ACTACATCCCTGGGTACGGA 59.367 55.000 13.56 0.00 0.00 4.69
3674 4119 4.010667 TGTATTTGGAGGTTAGCGTTGT 57.989 40.909 0.00 0.00 0.00 3.32
3814 4259 9.449719 AAAGGTTCATTGGACAGTAATAGTTAG 57.550 33.333 0.00 0.00 0.00 2.34
3888 4333 3.349927 TCAAATGCCTCTCAAGGTGATG 58.650 45.455 0.00 0.00 45.34 3.07
3903 4348 5.138125 AGGTGATGCAACCATAAAAAGTG 57.862 39.130 10.18 0.00 43.20 3.16
3904 4349 4.588528 AGGTGATGCAACCATAAAAAGTGT 59.411 37.500 10.18 0.00 43.20 3.55
3940 4400 5.106791 GCACATAATCCATGAAGATCCGAAG 60.107 44.000 0.00 0.00 38.10 3.79
4003 4463 1.067495 CCTAAGATACTAGCGGGCTGC 60.067 57.143 11.19 11.19 46.98 5.25
4019 4479 2.355716 GGCTGCTCCATACACTAAACCA 60.356 50.000 0.00 0.00 34.01 3.67
4021 4481 3.868369 GCTGCTCCATACACTAAACCACA 60.868 47.826 0.00 0.00 0.00 4.17
4022 4482 4.517285 CTGCTCCATACACTAAACCACAT 58.483 43.478 0.00 0.00 0.00 3.21
4052 4512 2.296190 GGGTAAACACTTCTTTGGCAGG 59.704 50.000 0.00 0.00 0.00 4.85
4097 4558 9.320352 TGCTAATATAACGAAACATATGTGTGT 57.680 29.630 9.63 5.62 38.92 3.72
4112 4573 2.703536 TGTGTGTTCTGGCCTCTTAAGA 59.296 45.455 3.32 4.81 0.00 2.10
4124 4585 4.142513 GGCCTCTTAAGAAAGCATCACTTG 60.143 45.833 22.15 2.29 39.09 3.16
4125 4586 4.457257 GCCTCTTAAGAAAGCATCACTTGT 59.543 41.667 17.97 0.00 39.09 3.16
4278 4742 3.440173 CGTGTGCAATTAGGTGAGGATTT 59.560 43.478 0.00 0.00 0.00 2.17
4280 4744 3.763360 TGTGCAATTAGGTGAGGATTTGG 59.237 43.478 0.00 0.00 0.00 3.28
4347 4811 3.349488 GAACTTTGGTTCTTTCCACGG 57.651 47.619 2.14 0.00 45.90 4.94
4509 5003 4.158394 TGGCAAGTATCCAATTTTCTCAGC 59.842 41.667 0.00 0.00 0.00 4.26
4510 5004 4.346129 GCAAGTATCCAATTTTCTCAGCG 58.654 43.478 0.00 0.00 0.00 5.18
4511 5005 4.731773 GCAAGTATCCAATTTTCTCAGCGG 60.732 45.833 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.764823 ACAAGCGGAGAATTGGTCAATTAA 59.235 37.500 8.69 0.00 40.77 1.40
2 3 3.157087 ACAAGCGGAGAATTGGTCAATT 58.843 40.909 8.48 8.48 43.14 2.32
3 4 2.795329 ACAAGCGGAGAATTGGTCAAT 58.205 42.857 0.00 0.00 31.38 2.57
5 6 2.270352 AACAAGCGGAGAATTGGTCA 57.730 45.000 0.00 0.00 31.38 4.02
6 7 2.293399 ACAAACAAGCGGAGAATTGGTC 59.707 45.455 0.00 0.00 31.38 4.02
8 9 3.369546 AACAAACAAGCGGAGAATTGG 57.630 42.857 0.00 0.00 31.38 3.16
9 10 4.111916 ACAAACAAACAAGCGGAGAATTG 58.888 39.130 0.00 0.00 33.01 2.32
11 12 4.385358 AACAAACAAACAAGCGGAGAAT 57.615 36.364 0.00 0.00 0.00 2.40
13 14 3.442273 AGAAACAAACAAACAAGCGGAGA 59.558 39.130 0.00 0.00 0.00 3.71
14 15 3.769536 AGAAACAAACAAACAAGCGGAG 58.230 40.909 0.00 0.00 0.00 4.63
15 16 3.859411 AGAAACAAACAAACAAGCGGA 57.141 38.095 0.00 0.00 0.00 5.54
16 17 3.001168 CGAAGAAACAAACAAACAAGCGG 60.001 43.478 0.00 0.00 0.00 5.52
17 18 3.849145 TCGAAGAAACAAACAAACAAGCG 59.151 39.130 0.00 0.00 0.00 4.68
18 19 4.265320 CCTCGAAGAAACAAACAAACAAGC 59.735 41.667 0.00 0.00 34.09 4.01
19 20 4.798387 CCCTCGAAGAAACAAACAAACAAG 59.202 41.667 0.00 0.00 34.09 3.16
20 21 4.459685 TCCCTCGAAGAAACAAACAAACAA 59.540 37.500 0.00 0.00 34.09 2.83
21 22 4.011023 TCCCTCGAAGAAACAAACAAACA 58.989 39.130 0.00 0.00 34.09 2.83
22 23 4.625972 TCCCTCGAAGAAACAAACAAAC 57.374 40.909 0.00 0.00 34.09 2.93
23 24 4.142337 GGTTCCCTCGAAGAAACAAACAAA 60.142 41.667 7.79 0.00 34.09 2.83
24 25 3.379057 GGTTCCCTCGAAGAAACAAACAA 59.621 43.478 7.79 0.00 34.09 2.83
25 26 2.946990 GGTTCCCTCGAAGAAACAAACA 59.053 45.455 7.79 0.00 34.09 2.83
26 27 2.946990 TGGTTCCCTCGAAGAAACAAAC 59.053 45.455 11.99 0.00 37.98 2.93
27 28 3.284793 TGGTTCCCTCGAAGAAACAAA 57.715 42.857 11.99 0.00 37.98 2.83
28 29 3.284793 TTGGTTCCCTCGAAGAAACAA 57.715 42.857 19.25 19.25 46.03 2.83
29 30 3.181449 TGATTGGTTCCCTCGAAGAAACA 60.181 43.478 10.68 10.68 39.13 2.83
30 31 3.408634 TGATTGGTTCCCTCGAAGAAAC 58.591 45.455 6.05 6.05 34.09 2.78
31 32 3.780804 TGATTGGTTCCCTCGAAGAAA 57.219 42.857 0.00 0.00 34.09 2.52
32 33 3.780804 TTGATTGGTTCCCTCGAAGAA 57.219 42.857 0.00 0.00 34.09 2.52
33 34 3.009033 ACATTGATTGGTTCCCTCGAAGA 59.991 43.478 0.00 0.00 0.00 2.87
34 35 3.347216 ACATTGATTGGTTCCCTCGAAG 58.653 45.455 0.00 0.00 0.00 3.79
35 36 3.433306 ACATTGATTGGTTCCCTCGAA 57.567 42.857 0.00 0.00 0.00 3.71
36 37 3.433306 AACATTGATTGGTTCCCTCGA 57.567 42.857 0.00 0.00 0.00 4.04
37 38 4.519540 AAAACATTGATTGGTTCCCTCG 57.480 40.909 0.00 0.00 32.76 4.63
38 39 9.586435 CTATTTAAAACATTGATTGGTTCCCTC 57.414 33.333 0.00 0.00 32.76 4.30
39 40 8.040727 GCTATTTAAAACATTGATTGGTTCCCT 58.959 33.333 0.00 0.00 32.76 4.20
40 41 7.010091 CGCTATTTAAAACATTGATTGGTTCCC 59.990 37.037 0.00 0.00 32.76 3.97
41 42 7.010091 CCGCTATTTAAAACATTGATTGGTTCC 59.990 37.037 0.00 0.00 32.76 3.62
42 43 7.010091 CCCGCTATTTAAAACATTGATTGGTTC 59.990 37.037 0.00 0.00 32.76 3.62
43 44 6.816140 CCCGCTATTTAAAACATTGATTGGTT 59.184 34.615 0.00 0.00 36.59 3.67
44 45 6.337356 CCCGCTATTTAAAACATTGATTGGT 58.663 36.000 0.00 0.00 0.00 3.67
45 46 5.234116 GCCCGCTATTTAAAACATTGATTGG 59.766 40.000 0.00 0.00 0.00 3.16
46 47 6.042143 AGCCCGCTATTTAAAACATTGATTG 58.958 36.000 0.00 0.00 0.00 2.67
47 48 6.220726 AGCCCGCTATTTAAAACATTGATT 57.779 33.333 0.00 0.00 0.00 2.57
48 49 5.852282 AGCCCGCTATTTAAAACATTGAT 57.148 34.783 0.00 0.00 0.00 2.57
49 50 6.544197 TCATAGCCCGCTATTTAAAACATTGA 59.456 34.615 6.48 0.00 37.16 2.57
50 51 6.734137 TCATAGCCCGCTATTTAAAACATTG 58.266 36.000 6.48 0.00 37.16 2.82
51 52 6.952773 TCATAGCCCGCTATTTAAAACATT 57.047 33.333 6.48 0.00 37.16 2.71
52 53 6.952773 TTCATAGCCCGCTATTTAAAACAT 57.047 33.333 6.48 0.00 37.16 2.71
53 54 6.761099 TTTCATAGCCCGCTATTTAAAACA 57.239 33.333 6.48 0.00 37.16 2.83
54 55 8.642908 ATTTTTCATAGCCCGCTATTTAAAAC 57.357 30.769 18.57 0.00 37.16 2.43
55 56 9.959749 CTATTTTTCATAGCCCGCTATTTAAAA 57.040 29.630 18.53 18.53 37.16 1.52
56 57 8.079809 GCTATTTTTCATAGCCCGCTATTTAAA 58.920 33.333 6.48 7.86 40.69 1.52
57 58 7.572353 CGCTATTTTTCATAGCCCGCTATTTAA 60.572 37.037 6.48 2.47 42.89 1.52
58 59 6.128391 CGCTATTTTTCATAGCCCGCTATTTA 60.128 38.462 6.48 0.00 42.89 1.40
59 60 5.334879 CGCTATTTTTCATAGCCCGCTATTT 60.335 40.000 6.48 0.00 42.89 1.40
60 61 4.154195 CGCTATTTTTCATAGCCCGCTATT 59.846 41.667 6.48 0.00 42.89 1.73
61 62 3.684788 CGCTATTTTTCATAGCCCGCTAT 59.315 43.478 3.31 3.31 42.89 2.97
62 63 3.064207 CGCTATTTTTCATAGCCCGCTA 58.936 45.455 8.01 0.00 42.89 4.26
63 64 1.873591 CGCTATTTTTCATAGCCCGCT 59.126 47.619 8.01 0.00 42.89 5.52
64 65 1.602377 ACGCTATTTTTCATAGCCCGC 59.398 47.619 8.01 0.00 42.89 6.13
65 66 2.096909 CGACGCTATTTTTCATAGCCCG 60.097 50.000 8.01 8.07 42.89 6.13
66 67 2.223377 CCGACGCTATTTTTCATAGCCC 59.777 50.000 8.01 1.09 42.89 5.19
67 68 2.223377 CCCGACGCTATTTTTCATAGCC 59.777 50.000 8.01 0.00 42.89 3.93
68 69 2.349532 GCCCGACGCTATTTTTCATAGC 60.350 50.000 4.08 4.08 42.53 2.97
69 70 2.223377 GGCCCGACGCTATTTTTCATAG 59.777 50.000 0.00 0.00 37.74 2.23
70 71 2.158871 AGGCCCGACGCTATTTTTCATA 60.159 45.455 0.00 0.00 37.74 2.15
71 72 1.021968 GGCCCGACGCTATTTTTCAT 58.978 50.000 0.00 0.00 37.74 2.57
72 73 0.035820 AGGCCCGACGCTATTTTTCA 60.036 50.000 0.00 0.00 37.74 2.69
73 74 0.656259 GAGGCCCGACGCTATTTTTC 59.344 55.000 0.00 0.00 37.74 2.29
74 75 0.746923 GGAGGCCCGACGCTATTTTT 60.747 55.000 0.00 0.00 37.74 1.94
75 76 1.153229 GGAGGCCCGACGCTATTTT 60.153 57.895 0.00 0.00 37.74 1.82
76 77 1.906105 TTGGAGGCCCGACGCTATTT 61.906 55.000 0.00 0.00 37.74 1.40
77 78 1.906105 TTTGGAGGCCCGACGCTATT 61.906 55.000 0.00 0.00 37.74 1.73
78 79 1.696097 ATTTGGAGGCCCGACGCTAT 61.696 55.000 0.00 0.00 37.74 2.97
79 80 2.306255 GATTTGGAGGCCCGACGCTA 62.306 60.000 0.00 0.00 37.74 4.26
80 81 3.682292 GATTTGGAGGCCCGACGCT 62.682 63.158 0.00 0.00 37.74 5.07
81 82 3.202706 GATTTGGAGGCCCGACGC 61.203 66.667 0.00 0.00 34.29 5.19
82 83 1.815421 CTGATTTGGAGGCCCGACG 60.815 63.158 0.00 0.00 34.29 5.12
83 84 2.115291 GCTGATTTGGAGGCCCGAC 61.115 63.158 0.00 0.00 34.29 4.79
84 85 0.980754 TAGCTGATTTGGAGGCCCGA 60.981 55.000 0.00 0.00 34.29 5.14
85 86 0.109342 ATAGCTGATTTGGAGGCCCG 59.891 55.000 0.00 0.00 34.29 6.13
86 87 2.877708 GCTATAGCTGATTTGGAGGCCC 60.878 54.545 17.75 0.00 38.21 5.80
87 88 2.431454 GCTATAGCTGATTTGGAGGCC 58.569 52.381 17.75 0.00 38.21 5.19
88 89 2.072298 CGCTATAGCTGATTTGGAGGC 58.928 52.381 21.98 0.00 39.32 4.70
89 90 2.613977 CCCGCTATAGCTGATTTGGAGG 60.614 54.545 21.98 11.98 39.32 4.30
90 91 2.037772 ACCCGCTATAGCTGATTTGGAG 59.962 50.000 21.98 10.78 39.32 3.86
91 92 2.047061 ACCCGCTATAGCTGATTTGGA 58.953 47.619 21.98 0.00 39.32 3.53
92 93 2.550830 ACCCGCTATAGCTGATTTGG 57.449 50.000 21.98 14.00 39.32 3.28
93 94 6.373779 CAAATAACCCGCTATAGCTGATTTG 58.626 40.000 21.98 19.87 39.32 2.32
94 95 5.048713 GCAAATAACCCGCTATAGCTGATTT 60.049 40.000 21.98 13.80 39.32 2.17
95 96 4.455877 GCAAATAACCCGCTATAGCTGATT 59.544 41.667 21.98 11.85 39.32 2.57
96 97 4.003648 GCAAATAACCCGCTATAGCTGAT 58.996 43.478 21.98 10.44 39.32 2.90
97 98 3.399330 GCAAATAACCCGCTATAGCTGA 58.601 45.455 21.98 0.99 39.32 4.26
98 99 2.157668 CGCAAATAACCCGCTATAGCTG 59.842 50.000 21.98 15.59 39.32 4.24
99 100 2.036733 TCGCAAATAACCCGCTATAGCT 59.963 45.455 21.98 6.31 39.32 3.32
100 101 2.409975 TCGCAAATAACCCGCTATAGC 58.590 47.619 15.09 15.09 37.78 2.97
101 102 3.432252 CCTTCGCAAATAACCCGCTATAG 59.568 47.826 0.00 0.00 0.00 1.31
102 103 3.395639 CCTTCGCAAATAACCCGCTATA 58.604 45.455 0.00 0.00 0.00 1.31
103 104 2.218603 CCTTCGCAAATAACCCGCTAT 58.781 47.619 0.00 0.00 0.00 2.97
104 105 1.658994 CCTTCGCAAATAACCCGCTA 58.341 50.000 0.00 0.00 0.00 4.26
105 106 1.654023 GCCTTCGCAAATAACCCGCT 61.654 55.000 0.00 0.00 34.03 5.52
106 107 1.226575 GCCTTCGCAAATAACCCGC 60.227 57.895 0.00 0.00 34.03 6.13
107 108 1.061887 CGCCTTCGCAAATAACCCG 59.938 57.895 0.00 0.00 34.03 5.28
108 109 0.098200 GTCGCCTTCGCAAATAACCC 59.902 55.000 0.00 0.00 35.26 4.11
109 110 0.098200 GGTCGCCTTCGCAAATAACC 59.902 55.000 0.00 0.00 35.26 2.85
110 111 0.800012 TGGTCGCCTTCGCAAATAAC 59.200 50.000 0.00 0.00 35.26 1.89
111 112 1.745232 ATGGTCGCCTTCGCAAATAA 58.255 45.000 0.00 0.00 35.26 1.40
112 113 1.745232 AATGGTCGCCTTCGCAAATA 58.255 45.000 0.00 0.00 35.26 1.40
113 114 0.887933 AAATGGTCGCCTTCGCAAAT 59.112 45.000 0.00 0.00 35.26 2.32
114 115 1.466950 CTAAATGGTCGCCTTCGCAAA 59.533 47.619 0.00 0.00 35.26 3.68
115 116 1.083489 CTAAATGGTCGCCTTCGCAA 58.917 50.000 0.00 0.00 35.26 4.85
116 117 1.366111 GCTAAATGGTCGCCTTCGCA 61.366 55.000 0.00 0.00 35.26 5.10
117 118 1.352056 GCTAAATGGTCGCCTTCGC 59.648 57.895 0.00 0.00 35.26 4.70
118 119 1.636340 CGCTAAATGGTCGCCTTCG 59.364 57.895 0.00 0.00 0.00 3.79
119 120 1.436983 CCCGCTAAATGGTCGCCTTC 61.437 60.000 0.00 0.00 0.00 3.46
120 121 1.451387 CCCGCTAAATGGTCGCCTT 60.451 57.895 0.00 0.00 0.00 4.35
121 122 2.189521 CCCGCTAAATGGTCGCCT 59.810 61.111 0.00 0.00 0.00 5.52
122 123 3.583086 GCCCGCTAAATGGTCGCC 61.583 66.667 0.00 0.00 0.00 5.54
123 124 2.117941 GATGCCCGCTAAATGGTCGC 62.118 60.000 0.00 0.00 0.00 5.19
124 125 1.507141 GGATGCCCGCTAAATGGTCG 61.507 60.000 0.00 0.00 0.00 4.79
125 126 0.179018 AGGATGCCCGCTAAATGGTC 60.179 55.000 0.00 0.00 37.58 4.02
126 127 0.466189 CAGGATGCCCGCTAAATGGT 60.466 55.000 0.00 0.00 37.58 3.55
127 128 2.334307 CAGGATGCCCGCTAAATGG 58.666 57.895 0.00 0.00 37.58 3.16
139 140 4.153117 CGCTATAGCCTTTTTAGCAGGATG 59.847 45.833 19.00 0.00 38.58 3.51
140 141 4.319177 CGCTATAGCCTTTTTAGCAGGAT 58.681 43.478 19.00 0.00 38.58 3.24
141 142 3.494398 CCGCTATAGCCTTTTTAGCAGGA 60.494 47.826 19.00 0.00 38.58 3.86
142 143 2.808543 CCGCTATAGCCTTTTTAGCAGG 59.191 50.000 19.00 6.38 38.58 4.85
143 144 2.808543 CCCGCTATAGCCTTTTTAGCAG 59.191 50.000 19.00 0.81 38.58 4.24
144 145 2.846193 CCCGCTATAGCCTTTTTAGCA 58.154 47.619 19.00 0.00 38.58 3.49
145 146 1.535896 GCCCGCTATAGCCTTTTTAGC 59.464 52.381 19.00 7.64 37.91 3.09
146 147 3.127425 AGCCCGCTATAGCCTTTTTAG 57.873 47.619 19.00 2.99 37.91 1.85
147 148 4.903045 ATAGCCCGCTATAGCCTTTTTA 57.097 40.909 19.00 6.18 37.47 1.52
148 149 3.790089 ATAGCCCGCTATAGCCTTTTT 57.210 42.857 19.00 4.18 37.47 1.94
149 150 4.473477 CTATAGCCCGCTATAGCCTTTT 57.527 45.455 23.85 5.54 46.26 2.27
157 158 3.992260 CTATTCGCTATAGCCCGCTAT 57.008 47.619 19.00 13.46 41.58 2.97
165 166 8.906636 TTTAAATAGACGGCTATTCGCTATAG 57.093 34.615 23.56 0.00 44.49 1.31
166 167 9.132521 GTTTTAAATAGACGGCTATTCGCTATA 57.867 33.333 23.56 9.41 44.49 1.31
167 168 7.871463 AGTTTTAAATAGACGGCTATTCGCTAT 59.129 33.333 23.56 10.43 44.49 2.97
168 169 7.205297 AGTTTTAAATAGACGGCTATTCGCTA 58.795 34.615 23.56 10.14 44.49 4.26
169 170 6.047231 AGTTTTAAATAGACGGCTATTCGCT 58.953 36.000 23.56 11.16 44.49 4.93
170 171 6.283161 AGTTTTAAATAGACGGCTATTCGC 57.717 37.500 23.56 11.80 44.49 4.70
171 172 9.188588 TCATAGTTTTAAATAGACGGCTATTCG 57.811 33.333 23.56 4.90 44.49 3.34
175 176 9.101655 GGTTTCATAGTTTTAAATAGACGGCTA 57.898 33.333 0.00 0.00 0.00 3.93
176 177 7.608761 TGGTTTCATAGTTTTAAATAGACGGCT 59.391 33.333 0.00 0.00 0.00 5.52
177 178 7.754625 TGGTTTCATAGTTTTAAATAGACGGC 58.245 34.615 0.00 0.00 0.00 5.68
184 185 8.590204 ACGGGAATTGGTTTCATAGTTTTAAAT 58.410 29.630 0.00 0.00 35.94 1.40
185 186 7.953752 ACGGGAATTGGTTTCATAGTTTTAAA 58.046 30.769 0.00 0.00 35.94 1.52
186 187 7.527568 ACGGGAATTGGTTTCATAGTTTTAA 57.472 32.000 0.00 0.00 35.94 1.52
187 188 7.527568 AACGGGAATTGGTTTCATAGTTTTA 57.472 32.000 0.00 0.00 35.94 1.52
188 189 6.413783 AACGGGAATTGGTTTCATAGTTTT 57.586 33.333 0.00 0.00 35.94 2.43
189 190 6.183360 ACAAACGGGAATTGGTTTCATAGTTT 60.183 34.615 0.00 0.00 37.27 2.66
190 191 5.303333 ACAAACGGGAATTGGTTTCATAGTT 59.697 36.000 0.00 0.00 34.33 2.24
191 192 4.830600 ACAAACGGGAATTGGTTTCATAGT 59.169 37.500 0.00 0.00 34.33 2.12
192 193 5.385509 ACAAACGGGAATTGGTTTCATAG 57.614 39.130 0.00 0.00 34.33 2.23
193 194 5.793030 AACAAACGGGAATTGGTTTCATA 57.207 34.783 0.00 0.00 34.33 2.15
194 195 4.681074 AACAAACGGGAATTGGTTTCAT 57.319 36.364 0.00 0.00 34.33 2.57
195 196 5.593679 TTAACAAACGGGAATTGGTTTCA 57.406 34.783 0.00 0.00 34.33 2.69
196 197 6.757478 TCTTTTAACAAACGGGAATTGGTTTC 59.243 34.615 0.00 0.00 34.33 2.78
197 198 6.641474 TCTTTTAACAAACGGGAATTGGTTT 58.359 32.000 0.00 0.00 36.85 3.27
206 207 5.969435 GTGACTCTTTCTTTTAACAAACGGG 59.031 40.000 0.00 0.00 0.00 5.28
207 208 6.548171 TGTGACTCTTTCTTTTAACAAACGG 58.452 36.000 0.00 0.00 0.00 4.44
232 233 4.563374 CCATTCCCCCAACAAAGAAACATC 60.563 45.833 0.00 0.00 0.00 3.06
290 291 2.930682 GTGAGATTAAACGGAGCAGACC 59.069 50.000 0.00 0.00 0.00 3.85
312 313 0.458669 TAGGCGTCGTCATTTCCCTC 59.541 55.000 0.00 0.00 0.00 4.30
316 317 1.593006 CATGGTAGGCGTCGTCATTTC 59.407 52.381 0.00 0.00 0.00 2.17
326 327 0.465705 ACATCTCCACATGGTAGGCG 59.534 55.000 0.00 0.00 36.34 5.52
328 329 2.092753 AGCAACATCTCCACATGGTAGG 60.093 50.000 0.00 0.00 36.34 3.18
340 341 5.242393 AGTCAAATTAAGCACAGCAACATCT 59.758 36.000 0.00 0.00 0.00 2.90
341 342 5.464168 AGTCAAATTAAGCACAGCAACATC 58.536 37.500 0.00 0.00 0.00 3.06
394 395 3.497262 TGTATATACACACGGAGAGCTCG 59.503 47.826 11.62 0.00 0.00 5.03
402 403 9.140286 CTGGAATTTCTATGTATATACACACGG 57.860 37.037 17.69 8.39 39.30 4.94
414 415 3.763897 GGCAACACCTGGAATTTCTATGT 59.236 43.478 0.00 0.00 34.51 2.29
415 416 3.131046 GGGCAACACCTGGAATTTCTATG 59.869 47.826 0.00 0.00 39.10 2.23
417 418 2.378547 AGGGCAACACCTGGAATTTCTA 59.621 45.455 0.00 0.00 40.04 2.10
419 420 1.546029 GAGGGCAACACCTGGAATTTC 59.454 52.381 0.00 0.00 42.10 2.17
421 422 0.251787 GGAGGGCAACACCTGGAATT 60.252 55.000 0.00 0.00 42.10 2.17
423 424 2.840753 GGGAGGGCAACACCTGGAA 61.841 63.158 0.00 0.00 42.10 3.53
424 425 3.256960 GGGAGGGCAACACCTGGA 61.257 66.667 0.00 0.00 42.10 3.86
425 426 3.260100 AGGGAGGGCAACACCTGG 61.260 66.667 0.00 0.00 42.10 4.45
435 439 3.699798 TCTGAAGACAGAGGGAGGG 57.300 57.895 0.00 0.00 46.55 4.30
460 464 1.464997 GTTTGGAGCTTGCTTCCGTAG 59.535 52.381 0.00 0.00 37.54 3.51
506 513 6.364568 TCATGATCTTCACTTCTTCAGGAA 57.635 37.500 0.00 0.00 0.00 3.36
507 514 6.364568 TTCATGATCTTCACTTCTTCAGGA 57.635 37.500 0.00 0.00 0.00 3.86
508 515 5.064962 GCTTCATGATCTTCACTTCTTCAGG 59.935 44.000 0.00 0.00 0.00 3.86
509 516 5.642491 TGCTTCATGATCTTCACTTCTTCAG 59.358 40.000 0.00 0.00 0.00 3.02
510 517 5.554070 TGCTTCATGATCTTCACTTCTTCA 58.446 37.500 0.00 0.00 0.00 3.02
511 518 6.492007 TTGCTTCATGATCTTCACTTCTTC 57.508 37.500 0.00 0.00 0.00 2.87
512 519 6.889301 TTTGCTTCATGATCTTCACTTCTT 57.111 33.333 0.00 0.00 0.00 2.52
513 520 6.489361 AGTTTTGCTTCATGATCTTCACTTCT 59.511 34.615 0.00 0.00 0.00 2.85
514 521 6.675987 AGTTTTGCTTCATGATCTTCACTTC 58.324 36.000 0.00 0.00 0.00 3.01
515 522 6.645790 AGTTTTGCTTCATGATCTTCACTT 57.354 33.333 0.00 0.00 0.00 3.16
516 523 7.750229 TTAGTTTTGCTTCATGATCTTCACT 57.250 32.000 0.00 0.00 0.00 3.41
517 524 8.857216 CATTTAGTTTTGCTTCATGATCTTCAC 58.143 33.333 0.00 0.00 0.00 3.18
518 525 7.543172 GCATTTAGTTTTGCTTCATGATCTTCA 59.457 33.333 0.00 0.00 35.95 3.02
519 526 7.009907 GGCATTTAGTTTTGCTTCATGATCTTC 59.990 37.037 0.00 0.00 38.88 2.87
520 527 6.815142 GGCATTTAGTTTTGCTTCATGATCTT 59.185 34.615 0.00 0.00 38.88 2.40
521 528 6.154021 AGGCATTTAGTTTTGCTTCATGATCT 59.846 34.615 0.00 0.00 38.88 2.75
522 529 6.335777 AGGCATTTAGTTTTGCTTCATGATC 58.664 36.000 0.00 0.00 38.88 2.92
523 530 6.290294 AGGCATTTAGTTTTGCTTCATGAT 57.710 33.333 0.00 0.00 38.88 2.45
524 531 5.619757 CGAGGCATTTAGTTTTGCTTCATGA 60.620 40.000 7.61 0.00 43.02 3.07
525 532 4.560035 CGAGGCATTTAGTTTTGCTTCATG 59.440 41.667 7.61 0.00 43.02 3.07
526 533 4.458989 TCGAGGCATTTAGTTTTGCTTCAT 59.541 37.500 7.61 0.00 43.02 2.57
527 534 3.818210 TCGAGGCATTTAGTTTTGCTTCA 59.182 39.130 7.61 0.00 43.02 3.02
528 535 4.154195 TCTCGAGGCATTTAGTTTTGCTTC 59.846 41.667 13.56 0.00 40.43 3.86
529 536 4.072131 TCTCGAGGCATTTAGTTTTGCTT 58.928 39.130 13.56 0.00 38.88 3.91
530 537 3.674997 TCTCGAGGCATTTAGTTTTGCT 58.325 40.909 13.56 0.00 38.88 3.91
531 538 4.622701 ATCTCGAGGCATTTAGTTTTGC 57.377 40.909 13.56 0.00 38.14 3.68
532 539 7.251704 ACATATCTCGAGGCATTTAGTTTTG 57.748 36.000 13.56 0.00 0.00 2.44
533 540 7.865706 AACATATCTCGAGGCATTTAGTTTT 57.134 32.000 13.56 0.00 0.00 2.43
534 541 7.552687 TGAAACATATCTCGAGGCATTTAGTTT 59.447 33.333 13.56 13.63 0.00 2.66
535 542 7.047891 TGAAACATATCTCGAGGCATTTAGTT 58.952 34.615 13.56 6.18 0.00 2.24
536 543 6.582636 TGAAACATATCTCGAGGCATTTAGT 58.417 36.000 13.56 0.00 0.00 2.24
537 544 6.146837 CCTGAAACATATCTCGAGGCATTTAG 59.853 42.308 13.56 5.99 0.00 1.85
538 545 5.991606 CCTGAAACATATCTCGAGGCATTTA 59.008 40.000 13.56 0.00 0.00 1.40
539 546 4.818546 CCTGAAACATATCTCGAGGCATTT 59.181 41.667 13.56 6.67 0.00 2.32
540 547 4.141620 ACCTGAAACATATCTCGAGGCATT 60.142 41.667 13.56 0.00 0.00 3.56
541 548 3.389329 ACCTGAAACATATCTCGAGGCAT 59.611 43.478 13.56 1.86 0.00 4.40
542 549 2.766263 ACCTGAAACATATCTCGAGGCA 59.234 45.455 13.56 0.43 0.00 4.75
543 550 3.126831 CACCTGAAACATATCTCGAGGC 58.873 50.000 13.56 0.00 0.00 4.70
544 551 4.655762 TCACCTGAAACATATCTCGAGG 57.344 45.455 13.56 0.00 0.00 4.63
545 552 7.278646 TGAAATTCACCTGAAACATATCTCGAG 59.721 37.037 5.93 5.93 37.61 4.04
546 553 7.102993 TGAAATTCACCTGAAACATATCTCGA 58.897 34.615 0.00 0.00 37.61 4.04
547 554 7.307493 TGAAATTCACCTGAAACATATCTCG 57.693 36.000 0.00 0.00 37.61 4.04
609 616 5.119279 CAGATAAGTCAGAAACACGAACTGG 59.881 44.000 0.00 0.00 33.19 4.00
623 630 3.432749 GCATCCAGGCTTCAGATAAGTCA 60.433 47.826 0.00 0.00 0.00 3.41
631 638 2.941720 GTTCTTAGCATCCAGGCTTCAG 59.058 50.000 0.00 0.00 42.71 3.02
633 640 2.991250 TGTTCTTAGCATCCAGGCTTC 58.009 47.619 0.00 0.00 42.71 3.86
643 650 4.686972 CGATTCCTCTCATGTTCTTAGCA 58.313 43.478 0.00 0.00 0.00 3.49
659 666 1.604278 GTTAGATGGCCTTGCGATTCC 59.396 52.381 3.32 0.00 0.00 3.01
695 703 7.060421 AGGGCGGAGAATTTAATTTTGATAGA 58.940 34.615 0.00 0.00 0.00 1.98
709 717 1.244019 GCAACACAAGGGCGGAGAAT 61.244 55.000 0.00 0.00 0.00 2.40
716 724 2.594592 AGGTCGCAACACAAGGGC 60.595 61.111 0.00 0.00 0.00 5.19
728 736 1.399855 CGTACTCACAGTCACAGGTCG 60.400 57.143 0.00 0.00 0.00 4.79
747 755 0.110644 GAACTCGGCTTTCAGCAACG 60.111 55.000 0.00 0.00 44.75 4.10
757 765 4.913126 GACCAATCGAACTCGGCT 57.087 55.556 0.00 0.00 40.29 5.52
880 894 9.373603 GTTGGTTAAATTTGGGGATTACAATAC 57.626 33.333 0.00 0.00 0.00 1.89
883 900 6.329197 TGGTTGGTTAAATTTGGGGATTACAA 59.671 34.615 0.00 0.00 0.00 2.41
884 901 5.844516 TGGTTGGTTAAATTTGGGGATTACA 59.155 36.000 0.00 0.00 0.00 2.41
970 1301 3.514645 GCTGGAGCACAAATAAACATGG 58.485 45.455 0.00 0.00 41.59 3.66
984 1315 0.878086 GCATACTCTTCGGCTGGAGC 60.878 60.000 0.00 0.00 41.14 4.70
1092 1426 1.694844 TCTCAACGGTACCACACTGA 58.305 50.000 13.54 7.31 36.95 3.41
1246 1580 2.292794 TAGTTGAGCACCCGGATCGC 62.293 60.000 0.73 1.45 33.60 4.58
1263 1597 2.961526 AACAGTAGGCCGTGATGTAG 57.038 50.000 9.50 0.00 0.00 2.74
1338 1675 0.756070 GGTAGAGGGAGGAAGGTCGG 60.756 65.000 0.00 0.00 0.00 4.79
2025 2414 6.869695 TGCATTCATTAACATCTGCAGAAAT 58.130 32.000 22.50 12.95 34.92 2.17
2268 2687 8.147244 AGAGGGACACTATAAAACATAGTTGT 57.853 34.615 0.00 0.00 37.82 3.32
2435 2875 2.489938 TGCTGGCGAAAATACTCCTT 57.510 45.000 0.00 0.00 0.00 3.36
2550 2990 9.167311 CTTTTCCAAGTATTCTGCTACTATTGT 57.833 33.333 0.00 0.00 31.70 2.71
2662 3105 2.879103 TCTCTTGGCCGAATTCCTTT 57.121 45.000 0.00 0.00 0.00 3.11
3202 3645 5.975988 TTAGGTTATTCTCCTTCATGGCT 57.024 39.130 0.00 0.00 36.60 4.75
3205 3648 9.347240 ACATCATTTAGGTTATTCTCCTTCATG 57.653 33.333 0.00 0.00 36.60 3.07
3398 3841 1.065926 TGCTTCTGGCTCAACATCGAT 60.066 47.619 0.00 0.00 42.39 3.59
3478 3921 1.566018 GGTTCTCACTTTCGCCCACG 61.566 60.000 0.00 0.00 42.01 4.94
3674 4119 5.183522 TGCACACAATCAGATCAAATAGCAA 59.816 36.000 0.00 0.00 0.00 3.91
3762 4207 3.944015 TGTTGAACACACATCACATGTCA 59.056 39.130 0.00 0.00 42.70 3.58
3791 4236 7.336396 ACCTAACTATTACTGTCCAATGAACC 58.664 38.462 0.00 0.00 0.00 3.62
3851 4296 6.072286 AGGCATTTGAGTCAACAATACTCTTG 60.072 38.462 4.68 2.29 43.13 3.02
3858 4303 4.401022 TGAGAGGCATTTGAGTCAACAAT 58.599 39.130 4.68 0.00 0.00 2.71
3861 4306 3.190118 CCTTGAGAGGCATTTGAGTCAAC 59.810 47.826 4.68 0.00 35.94 3.18
3888 4333 5.602628 TGGGTAAACACTTTTTATGGTTGC 58.397 37.500 0.00 0.00 0.00 4.17
3903 4348 4.499696 GGATTATGTGCATGCTGGGTAAAC 60.500 45.833 20.33 7.20 0.00 2.01
3904 4349 3.636300 GGATTATGTGCATGCTGGGTAAA 59.364 43.478 20.33 6.26 0.00 2.01
3980 4440 3.825014 CAGCCCGCTAGTATCTTAGGTTA 59.175 47.826 0.00 0.00 0.00 2.85
4003 4463 5.496556 TGGAATGTGGTTTAGTGTATGGAG 58.503 41.667 0.00 0.00 0.00 3.86
4021 4481 3.825908 AGTGTTTACCCCACATGGAAT 57.174 42.857 0.00 0.00 37.39 3.01
4022 4482 3.139397 AGAAGTGTTTACCCCACATGGAA 59.861 43.478 0.00 0.00 37.39 3.53
4082 4543 3.426159 GGCCAGAACACACATATGTTTCG 60.426 47.826 5.37 0.00 42.89 3.46
4097 4558 3.788227 TGCTTTCTTAAGAGGCCAGAA 57.212 42.857 21.57 1.09 32.92 3.02
4112 4573 3.423539 TGGCTCTACAAGTGATGCTTT 57.576 42.857 0.00 0.00 34.69 3.51
4124 4585 5.593502 ACTAGTAGGTACACATTGGCTCTAC 59.406 44.000 1.45 0.00 0.00 2.59
4125 4586 5.763355 ACTAGTAGGTACACATTGGCTCTA 58.237 41.667 1.45 0.00 0.00 2.43
4215 4676 8.836735 TCAAAGTAGGAGAAGATAAAAGGGAAT 58.163 33.333 0.00 0.00 0.00 3.01
4235 4699 1.815757 ACCACCCACCTAGTCAAAGT 58.184 50.000 0.00 0.00 0.00 2.66
4341 4805 0.251916 CTCCATTAACAGGCCGTGGA 59.748 55.000 0.00 5.05 37.41 4.02
4342 4806 0.251916 TCTCCATTAACAGGCCGTGG 59.748 55.000 0.00 0.35 0.00 4.94
4344 4808 2.618045 CCTTTCTCCATTAACAGGCCGT 60.618 50.000 0.00 0.00 0.00 5.68
4345 4809 2.017049 CCTTTCTCCATTAACAGGCCG 58.983 52.381 0.00 0.00 0.00 6.13
4346 4810 3.366052 TCCTTTCTCCATTAACAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
4347 4811 5.476945 TCTTTTCCTTTCTCCATTAACAGGC 59.523 40.000 0.00 0.00 0.00 4.85
4458 4952 8.699130 TCTCAACATCTAGCTTCTCATAATTGA 58.301 33.333 0.00 0.00 0.00 2.57
4468 4962 4.194640 TGCCATTCTCAACATCTAGCTTC 58.805 43.478 0.00 0.00 0.00 3.86
4509 5003 7.496529 TCTATAAAAATTTCTCCATGCTCCG 57.503 36.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.