Multiple sequence alignment - TraesCS2A01G381200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G381200 chr2A 100.000 3037 0 0 1 3037 624703886 624700850 0.000000e+00 5609.0
1 TraesCS2A01G381200 chr2A 90.244 123 10 2 645 765 506951093 506951215 3.130000e-35 159.0
2 TraesCS2A01G381200 chr2D 96.791 1496 38 3 801 2290 482175470 482173979 0.000000e+00 2488.0
3 TraesCS2A01G381200 chr2D 92.045 792 42 7 2262 3037 482172906 482172120 0.000000e+00 1094.0
4 TraesCS2A01G381200 chr2D 84.974 193 26 3 469 660 482175732 482175542 3.090000e-45 193.0
5 TraesCS2A01G381200 chr2D 100.000 36 0 0 766 801 482175521 482175486 1.950000e-07 67.6
6 TraesCS2A01G381200 chr2B 96.617 1478 35 5 768 2234 566010076 566008603 0.000000e+00 2438.0
7 TraesCS2A01G381200 chr2B 86.458 672 72 7 2382 3037 566008470 566007802 0.000000e+00 719.0
8 TraesCS2A01G381200 chr3D 88.840 914 93 4 1027 1940 586127454 586126550 0.000000e+00 1114.0
9 TraesCS2A01G381200 chr3D 91.379 116 10 0 659 774 26258803 26258688 3.130000e-35 159.0
10 TraesCS2A01G381200 chr3D 88.800 125 13 1 652 775 572127425 572127549 5.240000e-33 152.0
11 TraesCS2A01G381200 chr3B 87.364 918 109 4 1027 1943 782748001 782747090 0.000000e+00 1046.0
12 TraesCS2A01G381200 chr7B 92.241 116 9 0 650 765 559142187 559142302 6.740000e-37 165.0
13 TraesCS2A01G381200 chr1D 94.340 106 6 0 659 764 447959570 447959465 2.420000e-36 163.0
14 TraesCS2A01G381200 chr7A 91.453 117 10 0 648 764 269960436 269960320 8.710000e-36 161.0
15 TraesCS2A01G381200 chrUn 92.793 111 7 1 660 770 30406060 30405951 3.130000e-35 159.0
16 TraesCS2A01G381200 chr4D 92.035 113 9 0 659 771 317234622 317234734 3.130000e-35 159.0
17 TraesCS2A01G381200 chr4A 90.756 119 9 2 654 770 593739020 593739138 1.130000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G381200 chr2A 624700850 624703886 3036 True 5609.00 5609 100.0000 1 3037 1 chr2A.!!$R1 3036
1 TraesCS2A01G381200 chr2D 482172120 482175732 3612 True 960.65 2488 93.4525 469 3037 4 chr2D.!!$R1 2568
2 TraesCS2A01G381200 chr2B 566007802 566010076 2274 True 1578.50 2438 91.5375 768 3037 2 chr2B.!!$R1 2269
3 TraesCS2A01G381200 chr3D 586126550 586127454 904 True 1114.00 1114 88.8400 1027 1940 1 chr3D.!!$R2 913
4 TraesCS2A01G381200 chr3B 782747090 782748001 911 True 1046.00 1046 87.3640 1027 1943 1 chr3B.!!$R1 916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.096976 CGCGCTAGGAAACAACCATG 59.903 55.0 5.56 0.0 0.00 3.66 F
60 61 0.107654 AACCATGGTTAGCTCCGAGC 60.108 55.0 28.86 12.8 42.84 5.03 F
129 130 0.108992 TACCACCATCGTCGCTCAAC 60.109 55.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 1492 3.991536 GAAGAGGAGGTCGGCGTGC 62.992 68.421 6.85 0.68 0.00 5.34 R
1951 1972 4.555313 CGAACATGACTGAACAGCAACAAT 60.555 41.667 0.00 0.00 0.00 2.71 R
2248 2279 9.308000 TCCATATAACTGATTGTTTCACCTTTT 57.692 29.630 0.00 0.00 39.89 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.839424 GGTTGAGGGGTCAGGAATTG 58.161 55.000 0.00 0.00 0.00 2.32
20 21 1.616994 GGTTGAGGGGTCAGGAATTGG 60.617 57.143 0.00 0.00 0.00 3.16
21 22 0.704076 TTGAGGGGTCAGGAATTGGG 59.296 55.000 0.00 0.00 0.00 4.12
22 23 1.076705 GAGGGGTCAGGAATTGGGC 60.077 63.158 0.00 0.00 0.00 5.36
23 24 2.440247 GGGGTCAGGAATTGGGCG 60.440 66.667 0.00 0.00 0.00 6.13
24 25 2.440247 GGGTCAGGAATTGGGCGG 60.440 66.667 0.00 0.00 0.00 6.13
25 26 2.674754 GGTCAGGAATTGGGCGGA 59.325 61.111 0.00 0.00 0.00 5.54
26 27 1.452108 GGTCAGGAATTGGGCGGAG 60.452 63.158 0.00 0.00 0.00 4.63
27 28 1.452108 GTCAGGAATTGGGCGGAGG 60.452 63.158 0.00 0.00 0.00 4.30
39 40 4.508128 CGGAGGCGCGCTAGGAAA 62.508 66.667 32.29 0.00 0.00 3.13
40 41 2.890961 GGAGGCGCGCTAGGAAAC 60.891 66.667 32.29 12.47 0.00 2.78
41 42 2.125673 GAGGCGCGCTAGGAAACA 60.126 61.111 32.29 0.00 0.00 2.83
42 43 1.740296 GAGGCGCGCTAGGAAACAA 60.740 57.895 32.29 0.00 0.00 2.83
43 44 1.967597 GAGGCGCGCTAGGAAACAAC 61.968 60.000 32.29 9.98 0.00 3.32
44 45 2.479198 GCGCGCTAGGAAACAACC 59.521 61.111 26.67 0.00 0.00 3.77
45 46 2.322081 GCGCGCTAGGAAACAACCA 61.322 57.895 26.67 0.00 0.00 3.67
46 47 1.644786 GCGCGCTAGGAAACAACCAT 61.645 55.000 26.67 0.00 0.00 3.55
47 48 0.096976 CGCGCTAGGAAACAACCATG 59.903 55.000 5.56 0.00 0.00 3.66
48 49 0.451783 GCGCTAGGAAACAACCATGG 59.548 55.000 11.19 11.19 0.00 3.66
49 50 1.821216 CGCTAGGAAACAACCATGGT 58.179 50.000 13.00 13.00 0.00 3.55
50 51 2.159382 CGCTAGGAAACAACCATGGTT 58.841 47.619 24.86 24.86 39.82 3.67
51 52 3.340034 CGCTAGGAAACAACCATGGTTA 58.660 45.455 29.36 11.59 36.33 2.85
52 53 3.374058 CGCTAGGAAACAACCATGGTTAG 59.626 47.826 29.36 23.45 36.33 2.34
53 54 3.128764 GCTAGGAAACAACCATGGTTAGC 59.871 47.826 29.36 25.98 36.33 3.09
54 55 3.525800 AGGAAACAACCATGGTTAGCT 57.474 42.857 29.36 16.01 36.33 3.32
55 56 3.421844 AGGAAACAACCATGGTTAGCTC 58.578 45.455 29.36 22.35 36.33 4.09
56 57 2.492088 GGAAACAACCATGGTTAGCTCC 59.508 50.000 29.36 26.37 36.33 4.70
57 58 1.821216 AACAACCATGGTTAGCTCCG 58.179 50.000 29.36 17.98 36.46 4.63
58 59 0.981183 ACAACCATGGTTAGCTCCGA 59.019 50.000 29.36 0.00 36.46 4.55
59 60 1.066143 ACAACCATGGTTAGCTCCGAG 60.066 52.381 29.36 16.56 36.46 4.63
60 61 0.107654 AACCATGGTTAGCTCCGAGC 60.108 55.000 28.86 12.80 42.84 5.03
61 62 1.264749 ACCATGGTTAGCTCCGAGCA 61.265 55.000 22.29 5.84 45.56 4.26
62 63 0.531532 CCATGGTTAGCTCCGAGCAG 60.532 60.000 22.29 3.27 45.56 4.24
63 64 0.461548 CATGGTTAGCTCCGAGCAGA 59.538 55.000 22.29 7.02 45.56 4.26
64 65 0.749649 ATGGTTAGCTCCGAGCAGAG 59.250 55.000 22.29 0.00 45.56 3.35
65 66 1.323271 TGGTTAGCTCCGAGCAGAGG 61.323 60.000 22.29 0.00 45.56 3.69
66 67 1.038130 GGTTAGCTCCGAGCAGAGGA 61.038 60.000 22.29 0.59 45.56 3.71
67 68 0.818296 GTTAGCTCCGAGCAGAGGAA 59.182 55.000 22.29 5.54 45.56 3.36
68 69 1.107114 TTAGCTCCGAGCAGAGGAAG 58.893 55.000 22.29 0.00 45.56 3.46
69 70 0.753479 TAGCTCCGAGCAGAGGAAGG 60.753 60.000 22.29 0.00 45.56 3.46
70 71 2.498726 CTCCGAGCAGAGGAAGGC 59.501 66.667 0.00 0.00 37.32 4.35
71 72 3.423162 CTCCGAGCAGAGGAAGGCG 62.423 68.421 0.00 0.00 37.32 5.52
72 73 3.452786 CCGAGCAGAGGAAGGCGA 61.453 66.667 0.00 0.00 34.54 5.54
73 74 2.202676 CGAGCAGAGGAAGGCGAC 60.203 66.667 0.00 0.00 34.54 5.19
74 75 2.202676 GAGCAGAGGAAGGCGACG 60.203 66.667 0.00 0.00 34.54 5.12
75 76 2.676822 AGCAGAGGAAGGCGACGA 60.677 61.111 0.00 0.00 34.54 4.20
76 77 2.202676 GCAGAGGAAGGCGACGAG 60.203 66.667 0.00 0.00 0.00 4.18
77 78 2.492090 CAGAGGAAGGCGACGAGG 59.508 66.667 0.00 0.00 0.00 4.63
78 79 2.756283 AGAGGAAGGCGACGAGGG 60.756 66.667 0.00 0.00 0.00 4.30
79 80 3.069318 GAGGAAGGCGACGAGGGT 61.069 66.667 0.00 0.00 0.00 4.34
80 81 3.066233 GAGGAAGGCGACGAGGGTC 62.066 68.421 0.00 0.00 39.89 4.46
88 89 4.452733 GACGAGGGTCGCCAAGGG 62.453 72.222 0.00 0.00 45.12 3.95
117 118 3.740397 CGTCGACGGCTACCACCA 61.740 66.667 29.70 0.00 35.37 4.17
118 119 2.890371 GTCGACGGCTACCACCAT 59.110 61.111 0.00 0.00 0.00 3.55
119 120 1.226888 GTCGACGGCTACCACCATC 60.227 63.158 0.00 0.00 0.00 3.51
120 121 2.278596 CGACGGCTACCACCATCG 60.279 66.667 0.00 0.00 0.00 3.84
121 122 2.890371 GACGGCTACCACCATCGT 59.110 61.111 0.00 0.00 36.74 3.73
122 123 1.226888 GACGGCTACCACCATCGTC 60.227 63.158 0.00 0.00 42.22 4.20
123 124 2.278596 CGGCTACCACCATCGTCG 60.279 66.667 0.00 0.00 0.00 5.12
124 125 2.585247 GGCTACCACCATCGTCGC 60.585 66.667 0.00 0.00 0.00 5.19
125 126 2.494918 GCTACCACCATCGTCGCT 59.505 61.111 0.00 0.00 0.00 4.93
126 127 1.589196 GCTACCACCATCGTCGCTC 60.589 63.158 0.00 0.00 0.00 5.03
127 128 1.807226 CTACCACCATCGTCGCTCA 59.193 57.895 0.00 0.00 0.00 4.26
128 129 0.172578 CTACCACCATCGTCGCTCAA 59.827 55.000 0.00 0.00 0.00 3.02
129 130 0.108992 TACCACCATCGTCGCTCAAC 60.109 55.000 0.00 0.00 0.00 3.18
130 131 1.374125 CCACCATCGTCGCTCAACA 60.374 57.895 0.00 0.00 0.00 3.33
131 132 0.740868 CCACCATCGTCGCTCAACAT 60.741 55.000 0.00 0.00 0.00 2.71
132 133 0.647410 CACCATCGTCGCTCAACATC 59.353 55.000 0.00 0.00 0.00 3.06
133 134 0.460284 ACCATCGTCGCTCAACATCC 60.460 55.000 0.00 0.00 0.00 3.51
134 135 0.179100 CCATCGTCGCTCAACATCCT 60.179 55.000 0.00 0.00 0.00 3.24
135 136 1.645034 CATCGTCGCTCAACATCCTT 58.355 50.000 0.00 0.00 0.00 3.36
136 137 2.481276 CCATCGTCGCTCAACATCCTTA 60.481 50.000 0.00 0.00 0.00 2.69
137 138 2.273370 TCGTCGCTCAACATCCTTAC 57.727 50.000 0.00 0.00 0.00 2.34
138 139 1.135199 TCGTCGCTCAACATCCTTACC 60.135 52.381 0.00 0.00 0.00 2.85
139 140 1.653151 GTCGCTCAACATCCTTACCC 58.347 55.000 0.00 0.00 0.00 3.69
140 141 0.539986 TCGCTCAACATCCTTACCCC 59.460 55.000 0.00 0.00 0.00 4.95
141 142 0.810031 CGCTCAACATCCTTACCCCG 60.810 60.000 0.00 0.00 0.00 5.73
142 143 1.095807 GCTCAACATCCTTACCCCGC 61.096 60.000 0.00 0.00 0.00 6.13
143 144 0.810031 CTCAACATCCTTACCCCGCG 60.810 60.000 0.00 0.00 0.00 6.46
144 145 1.817941 CAACATCCTTACCCCGCGG 60.818 63.158 21.04 21.04 0.00 6.46
145 146 3.692370 AACATCCTTACCCCGCGGC 62.692 63.158 22.85 0.00 0.00 6.53
146 147 4.169696 CATCCTTACCCCGCGGCA 62.170 66.667 22.85 3.45 0.00 5.69
147 148 3.404438 ATCCTTACCCCGCGGCAA 61.404 61.111 22.85 12.25 0.00 4.52
148 149 3.400599 ATCCTTACCCCGCGGCAAG 62.401 63.158 22.85 20.81 0.00 4.01
188 189 4.248842 CACCAGCGTCCACCACCA 62.249 66.667 0.00 0.00 0.00 4.17
189 190 4.250305 ACCAGCGTCCACCACCAC 62.250 66.667 0.00 0.00 0.00 4.16
191 192 4.248842 CAGCGTCCACCACCACCA 62.249 66.667 0.00 0.00 0.00 4.17
192 193 4.250305 AGCGTCCACCACCACCAC 62.250 66.667 0.00 0.00 0.00 4.16
194 195 4.980805 CGTCCACCACCACCACCG 62.981 72.222 0.00 0.00 0.00 4.94
195 196 4.636435 GTCCACCACCACCACCGG 62.636 72.222 0.00 0.00 0.00 5.28
201 202 4.467084 CACCACCACCGGCGCTAT 62.467 66.667 7.64 0.00 0.00 2.97
202 203 4.467084 ACCACCACCGGCGCTATG 62.467 66.667 7.64 2.97 0.00 2.23
204 205 4.155733 CACCACCGGCGCTATGGA 62.156 66.667 25.21 0.00 36.94 3.41
205 206 3.849951 ACCACCGGCGCTATGGAG 61.850 66.667 25.21 15.41 36.94 3.86
206 207 3.536917 CCACCGGCGCTATGGAGA 61.537 66.667 18.35 0.00 35.33 3.71
207 208 2.279517 CACCGGCGCTATGGAGAC 60.280 66.667 18.35 0.00 0.00 3.36
208 209 2.442272 ACCGGCGCTATGGAGACT 60.442 61.111 18.35 0.00 0.00 3.24
209 210 2.028190 CCGGCGCTATGGAGACTG 59.972 66.667 7.64 0.00 0.00 3.51
210 211 2.028190 CGGCGCTATGGAGACTGG 59.972 66.667 7.64 0.00 0.00 4.00
211 212 2.786495 CGGCGCTATGGAGACTGGT 61.786 63.158 7.64 0.00 0.00 4.00
212 213 1.227380 GGCGCTATGGAGACTGGTG 60.227 63.158 7.64 0.00 0.00 4.17
213 214 1.227380 GCGCTATGGAGACTGGTGG 60.227 63.158 0.00 0.00 0.00 4.61
214 215 1.227380 CGCTATGGAGACTGGTGGC 60.227 63.158 0.00 0.00 0.00 5.01
215 216 1.227380 GCTATGGAGACTGGTGGCG 60.227 63.158 0.00 0.00 0.00 5.69
216 217 1.227380 CTATGGAGACTGGTGGCGC 60.227 63.158 0.00 0.00 0.00 6.53
217 218 2.650813 CTATGGAGACTGGTGGCGCC 62.651 65.000 22.73 22.73 37.90 6.53
254 255 4.122149 CCACCCGCCCCTTGCATA 62.122 66.667 0.00 0.00 41.33 3.14
255 256 2.828549 CACCCGCCCCTTGCATAC 60.829 66.667 0.00 0.00 41.33 2.39
256 257 4.483243 ACCCGCCCCTTGCATACG 62.483 66.667 0.00 0.00 41.33 3.06
257 258 4.483243 CCCGCCCCTTGCATACGT 62.483 66.667 0.00 0.00 41.33 3.57
258 259 2.895372 CCGCCCCTTGCATACGTC 60.895 66.667 0.00 0.00 41.33 4.34
259 260 3.261951 CGCCCCTTGCATACGTCG 61.262 66.667 0.00 0.00 41.33 5.12
260 261 2.185867 GCCCCTTGCATACGTCGA 59.814 61.111 0.00 0.00 40.77 4.20
261 262 1.883084 GCCCCTTGCATACGTCGAG 60.883 63.158 0.00 0.00 40.77 4.04
262 263 1.883084 CCCCTTGCATACGTCGAGC 60.883 63.158 0.00 0.32 0.00 5.03
274 275 3.108343 TCGAGCGTCGAGGGATTC 58.892 61.111 7.31 0.00 44.82 2.52
275 276 1.451567 TCGAGCGTCGAGGGATTCT 60.452 57.895 7.31 0.00 44.82 2.40
276 277 1.009449 CGAGCGTCGAGGGATTCTC 60.009 63.158 7.31 4.07 43.74 2.87
277 278 1.360911 GAGCGTCGAGGGATTCTCC 59.639 63.158 7.31 0.00 39.30 3.71
278 279 1.076632 AGCGTCGAGGGATTCTCCT 60.077 57.895 7.31 0.00 39.30 3.69
279 280 0.684805 AGCGTCGAGGGATTCTCCTT 60.685 55.000 7.31 0.00 39.30 3.36
280 281 0.528684 GCGTCGAGGGATTCTCCTTG 60.529 60.000 7.31 0.00 39.30 3.61
281 282 0.528684 CGTCGAGGGATTCTCCTTGC 60.529 60.000 0.00 0.00 39.30 4.01
282 283 0.179070 GTCGAGGGATTCTCCTTGCC 60.179 60.000 0.00 0.00 39.30 4.52
283 284 1.227380 CGAGGGATTCTCCTTGCCG 60.227 63.158 0.00 0.00 39.30 5.69
284 285 1.524849 GAGGGATTCTCCTTGCCGC 60.525 63.158 0.00 0.00 37.25 6.53
285 286 2.897350 GGGATTCTCCTTGCCGCG 60.897 66.667 0.00 0.00 36.57 6.46
286 287 2.125106 GGATTCTCCTTGCCGCGT 60.125 61.111 4.92 0.00 32.53 6.01
287 288 1.745489 GGATTCTCCTTGCCGCGTT 60.745 57.895 4.92 0.00 32.53 4.84
288 289 1.706287 GGATTCTCCTTGCCGCGTTC 61.706 60.000 4.92 0.00 32.53 3.95
289 290 1.706287 GATTCTCCTTGCCGCGTTCC 61.706 60.000 4.92 0.00 0.00 3.62
290 291 3.894547 TTCTCCTTGCCGCGTTCCC 62.895 63.158 4.92 0.00 0.00 3.97
335 336 4.358841 CACCCCGCCACCATTCCA 62.359 66.667 0.00 0.00 0.00 3.53
336 337 4.360405 ACCCCGCCACCATTCCAC 62.360 66.667 0.00 0.00 0.00 4.02
337 338 4.047125 CCCCGCCACCATTCCACT 62.047 66.667 0.00 0.00 0.00 4.00
338 339 2.438434 CCCGCCACCATTCCACTC 60.438 66.667 0.00 0.00 0.00 3.51
339 340 2.438434 CCGCCACCATTCCACTCC 60.438 66.667 0.00 0.00 0.00 3.85
340 341 2.438434 CGCCACCATTCCACTCCC 60.438 66.667 0.00 0.00 0.00 4.30
341 342 2.971598 CGCCACCATTCCACTCCCT 61.972 63.158 0.00 0.00 0.00 4.20
342 343 1.379044 GCCACCATTCCACTCCCTG 60.379 63.158 0.00 0.00 0.00 4.45
343 344 1.379044 CCACCATTCCACTCCCTGC 60.379 63.158 0.00 0.00 0.00 4.85
344 345 1.379044 CACCATTCCACTCCCTGCC 60.379 63.158 0.00 0.00 0.00 4.85
345 346 1.852157 ACCATTCCACTCCCTGCCA 60.852 57.895 0.00 0.00 0.00 4.92
346 347 1.379044 CCATTCCACTCCCTGCCAC 60.379 63.158 0.00 0.00 0.00 5.01
347 348 1.746615 CATTCCACTCCCTGCCACG 60.747 63.158 0.00 0.00 0.00 4.94
348 349 2.971598 ATTCCACTCCCTGCCACGG 61.972 63.158 0.00 0.00 0.00 4.94
351 352 4.767255 CACTCCCTGCCACGGCTC 62.767 72.222 9.92 0.00 42.51 4.70
365 366 4.864334 GCTCCTCCCCACCGCATG 62.864 72.222 0.00 0.00 0.00 4.06
366 367 3.402681 CTCCTCCCCACCGCATGT 61.403 66.667 0.00 0.00 0.00 3.21
367 368 3.687321 CTCCTCCCCACCGCATGTG 62.687 68.421 0.00 0.00 45.01 3.21
369 370 4.415150 CTCCCCACCGCATGTGCT 62.415 66.667 0.00 0.00 44.01 4.40
370 371 4.408821 TCCCCACCGCATGTGCTC 62.409 66.667 0.00 0.00 44.01 4.26
372 373 4.415150 CCCACCGCATGTGCTCCT 62.415 66.667 0.00 0.00 44.01 3.69
373 374 2.821366 CCACCGCATGTGCTCCTC 60.821 66.667 0.00 0.00 44.01 3.71
374 375 2.821366 CACCGCATGTGCTCCTCC 60.821 66.667 0.00 0.00 38.34 4.30
375 376 4.101448 ACCGCATGTGCTCCTCCC 62.101 66.667 0.00 0.00 39.32 4.30
376 377 4.864334 CCGCATGTGCTCCTCCCC 62.864 72.222 0.00 0.00 39.32 4.81
377 378 4.100084 CGCATGTGCTCCTCCCCA 62.100 66.667 3.25 0.00 39.32 4.96
378 379 2.439156 GCATGTGCTCCTCCCCAC 60.439 66.667 0.00 0.00 38.21 4.61
379 380 2.273449 CATGTGCTCCTCCCCACC 59.727 66.667 0.00 0.00 0.00 4.61
380 381 3.402681 ATGTGCTCCTCCCCACCG 61.403 66.667 0.00 0.00 0.00 4.94
397 398 3.793144 GCGCGCACTCCTCCTTTG 61.793 66.667 29.10 0.00 0.00 2.77
398 399 3.793144 CGCGCACTCCTCCTTTGC 61.793 66.667 8.75 0.00 0.00 3.68
399 400 3.435186 GCGCACTCCTCCTTTGCC 61.435 66.667 0.30 0.00 32.31 4.52
400 401 3.121030 CGCACTCCTCCTTTGCCG 61.121 66.667 0.00 0.00 32.31 5.69
401 402 3.435186 GCACTCCTCCTTTGCCGC 61.435 66.667 0.00 0.00 0.00 6.53
402 403 3.121030 CACTCCTCCTTTGCCGCG 61.121 66.667 0.00 0.00 0.00 6.46
403 404 4.394712 ACTCCTCCTTTGCCGCGG 62.395 66.667 24.05 24.05 0.00 6.46
407 408 4.767255 CTCCTTTGCCGCGGCTCT 62.767 66.667 45.79 0.00 42.51 4.09
408 409 4.329545 TCCTTTGCCGCGGCTCTT 62.330 61.111 45.79 0.00 42.51 2.85
409 410 3.804193 CCTTTGCCGCGGCTCTTC 61.804 66.667 45.79 21.79 42.51 2.87
410 411 2.743928 CTTTGCCGCGGCTCTTCT 60.744 61.111 45.79 0.00 42.51 2.85
411 412 2.281484 TTTGCCGCGGCTCTTCTT 60.281 55.556 45.79 0.00 42.51 2.52
412 413 2.245714 CTTTGCCGCGGCTCTTCTTC 62.246 60.000 45.79 19.46 42.51 2.87
419 420 3.169198 GGCTCTTCTTCGCCGTTG 58.831 61.111 0.00 0.00 36.45 4.10
420 421 2.476499 GCTCTTCTTCGCCGTTGC 59.524 61.111 0.00 0.00 0.00 4.17
421 422 3.028366 GCTCTTCTTCGCCGTTGCC 62.028 63.158 0.00 0.00 0.00 4.52
422 423 2.730672 CTCTTCTTCGCCGTTGCCG 61.731 63.158 0.00 0.00 0.00 5.69
423 424 4.445545 CTTCTTCGCCGTTGCCGC 62.446 66.667 0.00 0.00 0.00 6.53
424 425 4.980805 TTCTTCGCCGTTGCCGCT 62.981 61.111 0.00 0.00 0.00 5.52
437 438 3.957535 CCGCTGCCGCCATTCATC 61.958 66.667 0.00 0.00 0.00 2.92
438 439 2.898840 CGCTGCCGCCATTCATCT 60.899 61.111 0.00 0.00 0.00 2.90
439 440 2.890109 CGCTGCCGCCATTCATCTC 61.890 63.158 0.00 0.00 0.00 2.75
440 441 1.525535 GCTGCCGCCATTCATCTCT 60.526 57.895 0.00 0.00 0.00 3.10
441 442 1.505477 GCTGCCGCCATTCATCTCTC 61.505 60.000 0.00 0.00 0.00 3.20
442 443 0.883814 CTGCCGCCATTCATCTCTCC 60.884 60.000 0.00 0.00 0.00 3.71
443 444 1.340399 TGCCGCCATTCATCTCTCCT 61.340 55.000 0.00 0.00 0.00 3.69
444 445 0.602372 GCCGCCATTCATCTCTCCTC 60.602 60.000 0.00 0.00 0.00 3.71
445 446 1.047002 CCGCCATTCATCTCTCCTCT 58.953 55.000 0.00 0.00 0.00 3.69
446 447 1.270199 CCGCCATTCATCTCTCCTCTG 60.270 57.143 0.00 0.00 0.00 3.35
447 448 1.270199 CGCCATTCATCTCTCCTCTGG 60.270 57.143 0.00 0.00 0.00 3.86
448 449 2.045524 GCCATTCATCTCTCCTCTGGA 58.954 52.381 0.00 0.00 0.00 3.86
449 450 2.638855 GCCATTCATCTCTCCTCTGGAT 59.361 50.000 0.00 0.00 0.00 3.41
450 451 3.306919 GCCATTCATCTCTCCTCTGGATC 60.307 52.174 0.00 0.00 0.00 3.36
451 452 3.261390 CCATTCATCTCTCCTCTGGATCC 59.739 52.174 4.20 4.20 0.00 3.36
452 453 2.692709 TCATCTCTCCTCTGGATCCC 57.307 55.000 9.90 0.00 0.00 3.85
453 454 1.202989 TCATCTCTCCTCTGGATCCCG 60.203 57.143 9.90 2.27 0.00 5.14
454 455 0.541764 ATCTCTCCTCTGGATCCCGC 60.542 60.000 9.90 0.00 0.00 6.13
455 456 1.456518 CTCTCCTCTGGATCCCGCA 60.457 63.158 9.90 0.00 0.00 5.69
456 457 1.456518 TCTCCTCTGGATCCCGCAG 60.457 63.158 9.90 0.00 0.00 5.18
457 458 1.760086 CTCCTCTGGATCCCGCAGT 60.760 63.158 9.90 0.00 0.00 4.40
458 459 2.025767 CTCCTCTGGATCCCGCAGTG 62.026 65.000 9.90 0.93 0.00 3.66
459 460 2.060383 CCTCTGGATCCCGCAGTGA 61.060 63.158 9.90 0.00 0.00 3.41
460 461 1.617018 CCTCTGGATCCCGCAGTGAA 61.617 60.000 9.90 0.00 0.00 3.18
461 462 0.460987 CTCTGGATCCCGCAGTGAAC 60.461 60.000 9.90 0.00 0.00 3.18
462 463 1.811266 CTGGATCCCGCAGTGAACG 60.811 63.158 9.90 0.00 0.00 3.95
471 472 1.771073 CGCAGTGAACGGTGAAAGCA 61.771 55.000 0.00 0.00 0.00 3.91
489 490 6.594937 TGAAAGCAATTCAGCTCAAAAGTTTT 59.405 30.769 0.00 0.00 45.89 2.43
490 491 6.594284 AAGCAATTCAGCTCAAAAGTTTTC 57.406 33.333 0.00 0.00 45.89 2.29
495 496 2.682856 TCAGCTCAAAAGTTTTCGCTGT 59.317 40.909 29.66 10.17 43.75 4.40
496 497 3.128589 TCAGCTCAAAAGTTTTCGCTGTT 59.871 39.130 29.66 9.67 43.75 3.16
502 503 4.082463 TCAAAAGTTTTCGCTGTTGACCTT 60.082 37.500 0.00 0.00 37.68 3.50
504 505 2.365582 AGTTTTCGCTGTTGACCTTGT 58.634 42.857 0.00 0.00 0.00 3.16
512 513 3.935203 CGCTGTTGACCTTGTAAGATGAT 59.065 43.478 0.00 0.00 0.00 2.45
515 516 3.684305 TGTTGACCTTGTAAGATGATGCG 59.316 43.478 0.00 0.00 0.00 4.73
544 545 2.741759 TTGTGCTGCTGATTAGACGA 57.258 45.000 0.00 0.00 0.00 4.20
548 549 3.109619 GTGCTGCTGATTAGACGACTAC 58.890 50.000 0.00 0.00 0.00 2.73
554 555 4.142447 TGCTGATTAGACGACTACAAGGAC 60.142 45.833 0.00 0.00 0.00 3.85
563 564 1.804326 CTACAAGGACGTTCGGGCG 60.804 63.158 0.00 0.00 37.94 6.13
638 639 4.451096 TGAGACTCCGAATAAACAAGCAAC 59.549 41.667 0.00 0.00 0.00 4.17
672 673 4.417426 AAAAAGAACTCTCTCCGTTCCA 57.583 40.909 0.00 0.00 41.19 3.53
673 674 4.417426 AAAAGAACTCTCTCCGTTCCAA 57.583 40.909 0.00 0.00 41.19 3.53
675 676 4.625607 AAGAACTCTCTCCGTTCCAAAT 57.374 40.909 0.00 0.00 41.19 2.32
676 677 4.625607 AGAACTCTCTCCGTTCCAAATT 57.374 40.909 0.00 0.00 41.19 1.82
677 678 5.740290 AGAACTCTCTCCGTTCCAAATTA 57.260 39.130 0.00 0.00 41.19 1.40
678 679 5.480205 AGAACTCTCTCCGTTCCAAATTAC 58.520 41.667 0.00 0.00 41.19 1.89
679 680 5.246429 AGAACTCTCTCCGTTCCAAATTACT 59.754 40.000 0.00 0.00 41.19 2.24
680 681 5.074584 ACTCTCTCCGTTCCAAATTACTC 57.925 43.478 0.00 0.00 0.00 2.59
681 682 4.106029 TCTCTCCGTTCCAAATTACTCG 57.894 45.455 0.00 0.00 0.00 4.18
682 683 3.508793 TCTCTCCGTTCCAAATTACTCGT 59.491 43.478 0.00 0.00 0.00 4.18
683 684 4.021719 TCTCTCCGTTCCAAATTACTCGTT 60.022 41.667 0.00 0.00 0.00 3.85
684 685 3.991773 TCTCCGTTCCAAATTACTCGTTG 59.008 43.478 0.00 0.00 0.00 4.10
685 686 3.991773 CTCCGTTCCAAATTACTCGTTGA 59.008 43.478 0.00 0.00 0.00 3.18
686 687 4.378774 TCCGTTCCAAATTACTCGTTGAA 58.621 39.130 0.00 0.00 0.00 2.69
687 688 4.449743 TCCGTTCCAAATTACTCGTTGAAG 59.550 41.667 0.00 0.00 0.00 3.02
688 689 4.449743 CCGTTCCAAATTACTCGTTGAAGA 59.550 41.667 0.00 0.00 0.00 2.87
689 690 5.049954 CCGTTCCAAATTACTCGTTGAAGAA 60.050 40.000 0.00 0.00 0.00 2.52
690 691 6.423862 CGTTCCAAATTACTCGTTGAAGAAA 58.576 36.000 0.00 0.00 0.00 2.52
691 692 7.075741 CGTTCCAAATTACTCGTTGAAGAAAT 58.924 34.615 0.00 0.00 0.00 2.17
692 693 8.225107 CGTTCCAAATTACTCGTTGAAGAAATA 58.775 33.333 0.00 0.00 0.00 1.40
693 694 9.543018 GTTCCAAATTACTCGTTGAAGAAATAG 57.457 33.333 0.00 0.00 0.00 1.73
694 695 9.496873 TTCCAAATTACTCGTTGAAGAAATAGA 57.503 29.630 0.00 0.00 0.00 1.98
695 696 9.667107 TCCAAATTACTCGTTGAAGAAATAGAT 57.333 29.630 0.00 0.00 0.00 1.98
696 697 9.708222 CCAAATTACTCGTTGAAGAAATAGATG 57.292 33.333 0.00 0.00 0.00 2.90
738 739 8.427902 ACATCTAGATACATCCATACATGTGT 57.572 34.615 9.11 0.00 37.57 3.72
739 740 9.533831 ACATCTAGATACATCCATACATGTGTA 57.466 33.333 9.11 1.04 37.57 2.90
749 750 8.826710 ACATCCATACATGTGTAAAGTAATTCG 58.173 33.333 9.11 0.00 35.57 3.34
750 751 7.780008 TCCATACATGTGTAAAGTAATTCGG 57.220 36.000 9.11 0.00 33.76 4.30
751 752 7.557724 TCCATACATGTGTAAAGTAATTCGGA 58.442 34.615 9.11 0.00 33.76 4.55
752 753 8.041919 TCCATACATGTGTAAAGTAATTCGGAA 58.958 33.333 9.11 0.00 33.76 4.30
753 754 8.120465 CCATACATGTGTAAAGTAATTCGGAAC 58.880 37.037 9.11 0.00 33.76 3.62
754 755 7.844169 CATACATGTGTAAAGTAATTCGGAACG 59.156 37.037 9.11 0.00 43.82 3.95
755 756 7.010738 ATACATGTGTAAAGTAATTCGGAACGG 59.989 37.037 9.11 0.00 43.07 4.44
827 844 8.195165 TCAATGTAGGTAGAGATTCCCTAATG 57.805 38.462 0.00 0.00 32.81 1.90
828 845 6.613153 ATGTAGGTAGAGATTCCCTAATGC 57.387 41.667 0.00 0.00 32.81 3.56
831 848 7.302948 TGTAGGTAGAGATTCCCTAATGCTAA 58.697 38.462 0.00 0.00 32.81 3.09
832 849 7.787904 TGTAGGTAGAGATTCCCTAATGCTAAA 59.212 37.037 0.00 0.00 32.81 1.85
834 851 7.740805 AGGTAGAGATTCCCTAATGCTAAAAG 58.259 38.462 0.00 0.00 0.00 2.27
848 865 7.945033 AATGCTAAAAGAAAGAAAATTGCGA 57.055 28.000 0.00 0.00 0.00 5.10
909 927 2.360801 TGGGACGGAAAAAGAAAGCAAG 59.639 45.455 0.00 0.00 0.00 4.01
1525 1543 3.068691 TTCTCCTCCTGCGTCCCG 61.069 66.667 0.00 0.00 0.00 5.14
1675 1696 4.424566 GGGTACTTCGCGTCGGCA 62.425 66.667 5.77 0.00 39.92 5.69
1951 1972 0.039617 CGAGCGGTTTGAAAATGGCA 60.040 50.000 0.00 0.00 0.00 4.92
2314 3446 0.949105 AGCGCAAAACTAGTCCACCG 60.949 55.000 11.47 0.00 0.00 4.94
2320 3452 2.719426 AAACTAGTCCACCGAGTTCG 57.281 50.000 0.00 0.00 32.27 3.95
2374 3506 1.258445 ATCTCACACCCAGGACCGTC 61.258 60.000 0.00 0.00 0.00 4.79
2378 3510 2.207924 ACACCCAGGACCGTCTGTC 61.208 63.158 0.00 0.00 43.67 3.51
2410 3564 3.118884 ACGCAAGATGGTAACTATTCGGT 60.119 43.478 0.00 0.00 43.62 4.69
2450 3604 1.873591 CTGTTCTTCGGTTCCACCTTG 59.126 52.381 0.00 0.00 35.66 3.61
2510 3664 5.059833 GTCACTCTGGATCAAGTTCTTTGT 58.940 41.667 0.00 0.00 38.01 2.83
2546 3700 0.247736 GACTGGTGCTGGACTTCGAT 59.752 55.000 0.00 0.00 0.00 3.59
2624 3778 2.509336 GGAGACCACGCATCACCG 60.509 66.667 0.00 0.00 0.00 4.94
2625 3779 2.261671 GAGACCACGCATCACCGT 59.738 61.111 0.00 0.00 43.11 4.83
2633 3799 1.079127 CGCATCACCGTCCCTTCTT 60.079 57.895 0.00 0.00 0.00 2.52
2645 3811 3.553508 CGTCCCTTCTTTCGACAGGTTTA 60.554 47.826 0.00 0.00 0.00 2.01
2662 3831 5.048504 CAGGTTTAGCATGATCTTGTGTGTT 60.049 40.000 10.05 0.00 0.00 3.32
2684 3853 0.108138 GCTACCGTTCCTGCACTGAT 60.108 55.000 0.00 0.00 0.00 2.90
2692 3861 2.362397 GTTCCTGCACTGATCGGAGATA 59.638 50.000 9.00 0.00 45.12 1.98
2710 3879 6.149807 CGGAGATATGGACTTTCTACTCTACC 59.850 46.154 0.00 0.00 0.00 3.18
2746 3915 1.377202 ACATCGCTTGTCGGCCATT 60.377 52.632 2.24 0.00 39.05 3.16
2905 4074 2.674754 CAGGTGCCCACGGGTTAT 59.325 61.111 3.54 0.00 37.65 1.89
2950 4119 2.859981 GCAGGGTTGGGCAACACAG 61.860 63.158 0.00 0.00 46.75 3.66
2964 4133 3.194542 GCAACACAGGTCTCTACTCTCAT 59.805 47.826 0.00 0.00 0.00 2.90
2995 4164 1.785768 TGTCGTTCACGGGTACAATG 58.214 50.000 0.00 0.00 40.29 2.82
3011 4180 5.066505 GGTACAATGATTGTGAGATGTTCCC 59.933 44.000 20.29 3.38 45.03 3.97
3012 4181 4.665451 ACAATGATTGTGAGATGTTCCCA 58.335 39.130 10.45 0.00 43.48 4.37
3013 4182 5.266788 ACAATGATTGTGAGATGTTCCCAT 58.733 37.500 10.45 0.00 43.48 4.00
3014 4183 6.425735 ACAATGATTGTGAGATGTTCCCATA 58.574 36.000 10.45 0.00 43.48 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.616994 CCAATTCCTGACCCCTCAACC 60.617 57.143 0.00 0.00 0.00 3.77
1 2 1.616994 CCCAATTCCTGACCCCTCAAC 60.617 57.143 0.00 0.00 0.00 3.18
2 3 0.704076 CCCAATTCCTGACCCCTCAA 59.296 55.000 0.00 0.00 0.00 3.02
3 4 1.863155 GCCCAATTCCTGACCCCTCA 61.863 60.000 0.00 0.00 0.00 3.86
4 5 1.076705 GCCCAATTCCTGACCCCTC 60.077 63.158 0.00 0.00 0.00 4.30
5 6 2.983879 CGCCCAATTCCTGACCCCT 61.984 63.158 0.00 0.00 0.00 4.79
6 7 2.440247 CGCCCAATTCCTGACCCC 60.440 66.667 0.00 0.00 0.00 4.95
7 8 2.440247 CCGCCCAATTCCTGACCC 60.440 66.667 0.00 0.00 0.00 4.46
8 9 1.452108 CTCCGCCCAATTCCTGACC 60.452 63.158 0.00 0.00 0.00 4.02
9 10 1.452108 CCTCCGCCCAATTCCTGAC 60.452 63.158 0.00 0.00 0.00 3.51
10 11 2.998097 CCTCCGCCCAATTCCTGA 59.002 61.111 0.00 0.00 0.00 3.86
11 12 2.830370 GCCTCCGCCCAATTCCTG 60.830 66.667 0.00 0.00 0.00 3.86
12 13 4.489771 CGCCTCCGCCCAATTCCT 62.490 66.667 0.00 0.00 0.00 3.36
22 23 4.508128 TTTCCTAGCGCGCCTCCG 62.508 66.667 30.33 13.31 37.57 4.63
23 24 2.890961 GTTTCCTAGCGCGCCTCC 60.891 66.667 30.33 5.03 0.00 4.30
24 25 1.740296 TTGTTTCCTAGCGCGCCTC 60.740 57.895 30.33 10.83 0.00 4.70
25 26 2.033194 GTTGTTTCCTAGCGCGCCT 61.033 57.895 30.33 17.79 0.00 5.52
26 27 2.479198 GTTGTTTCCTAGCGCGCC 59.521 61.111 30.33 11.28 0.00 6.53
27 28 1.644786 ATGGTTGTTTCCTAGCGCGC 61.645 55.000 26.66 26.66 0.00 6.86
28 29 0.096976 CATGGTTGTTTCCTAGCGCG 59.903 55.000 0.00 0.00 0.00 6.86
29 30 0.451783 CCATGGTTGTTTCCTAGCGC 59.548 55.000 2.57 0.00 0.00 5.92
30 31 1.821216 ACCATGGTTGTTTCCTAGCG 58.179 50.000 13.00 0.00 0.00 4.26
31 32 3.128764 GCTAACCATGGTTGTTTCCTAGC 59.871 47.826 35.49 28.95 38.92 3.42
32 33 4.589908 AGCTAACCATGGTTGTTTCCTAG 58.410 43.478 35.49 24.33 38.92 3.02
33 34 4.566907 GGAGCTAACCATGGTTGTTTCCTA 60.567 45.833 35.49 15.98 38.92 2.94
34 35 3.421844 GAGCTAACCATGGTTGTTTCCT 58.578 45.455 35.49 23.15 38.92 3.36
35 36 2.492088 GGAGCTAACCATGGTTGTTTCC 59.508 50.000 35.49 30.27 38.92 3.13
36 37 2.161609 CGGAGCTAACCATGGTTGTTTC 59.838 50.000 35.49 26.70 38.92 2.78
37 38 2.159382 CGGAGCTAACCATGGTTGTTT 58.841 47.619 35.49 21.54 38.92 2.83
38 39 1.349688 TCGGAGCTAACCATGGTTGTT 59.650 47.619 35.49 23.50 38.92 2.83
39 40 0.981183 TCGGAGCTAACCATGGTTGT 59.019 50.000 35.49 21.67 38.92 3.32
40 41 1.656652 CTCGGAGCTAACCATGGTTG 58.343 55.000 35.49 25.61 38.92 3.77
41 42 0.107654 GCTCGGAGCTAACCATGGTT 60.108 55.000 31.85 31.85 38.45 3.67
42 43 1.264749 TGCTCGGAGCTAACCATGGT 61.265 55.000 28.42 13.00 42.97 3.55
43 44 0.531532 CTGCTCGGAGCTAACCATGG 60.532 60.000 28.42 11.19 42.97 3.66
44 45 0.461548 TCTGCTCGGAGCTAACCATG 59.538 55.000 28.42 11.16 42.97 3.66
45 46 0.749649 CTCTGCTCGGAGCTAACCAT 59.250 55.000 28.42 0.00 42.97 3.55
46 47 1.323271 CCTCTGCTCGGAGCTAACCA 61.323 60.000 28.42 9.01 42.97 3.67
47 48 1.038130 TCCTCTGCTCGGAGCTAACC 61.038 60.000 28.42 2.18 42.97 2.85
48 49 0.818296 TTCCTCTGCTCGGAGCTAAC 59.182 55.000 28.42 2.56 42.97 2.34
49 50 1.107114 CTTCCTCTGCTCGGAGCTAA 58.893 55.000 28.42 16.21 42.97 3.09
50 51 0.753479 CCTTCCTCTGCTCGGAGCTA 60.753 60.000 28.42 16.55 42.97 3.32
51 52 2.057408 CCTTCCTCTGCTCGGAGCT 61.057 63.158 28.42 0.00 42.97 4.09
52 53 2.498726 CCTTCCTCTGCTCGGAGC 59.501 66.667 22.78 22.78 42.82 4.70
53 54 2.498726 GCCTTCCTCTGCTCGGAG 59.501 66.667 0.00 0.00 0.00 4.63
54 55 3.452786 CGCCTTCCTCTGCTCGGA 61.453 66.667 0.00 0.00 0.00 4.55
55 56 3.452786 TCGCCTTCCTCTGCTCGG 61.453 66.667 0.00 0.00 0.00 4.63
56 57 2.202676 GTCGCCTTCCTCTGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
57 58 2.202676 CGTCGCCTTCCTCTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
58 59 2.676822 TCGTCGCCTTCCTCTGCT 60.677 61.111 0.00 0.00 0.00 4.24
59 60 2.202676 CTCGTCGCCTTCCTCTGC 60.203 66.667 0.00 0.00 0.00 4.26
60 61 2.492090 CCTCGTCGCCTTCCTCTG 59.508 66.667 0.00 0.00 0.00 3.35
61 62 2.756283 CCCTCGTCGCCTTCCTCT 60.756 66.667 0.00 0.00 0.00 3.69
62 63 3.066233 GACCCTCGTCGCCTTCCTC 62.066 68.421 0.00 0.00 0.00 3.71
63 64 3.069318 GACCCTCGTCGCCTTCCT 61.069 66.667 0.00 0.00 0.00 3.36
71 72 4.452733 CCCTTGGCGACCCTCGTC 62.453 72.222 0.00 0.00 46.01 4.20
100 101 2.931713 GATGGTGGTAGCCGTCGACG 62.932 65.000 30.33 30.33 35.16 5.12
101 102 1.226888 GATGGTGGTAGCCGTCGAC 60.227 63.158 5.18 5.18 35.16 4.20
102 103 3.203442 GATGGTGGTAGCCGTCGA 58.797 61.111 0.00 0.00 35.16 4.20
104 105 1.226888 GACGATGGTGGTAGCCGTC 60.227 63.158 5.21 5.21 41.85 4.79
105 106 2.890371 GACGATGGTGGTAGCCGT 59.110 61.111 0.00 0.00 36.08 5.68
106 107 2.278596 CGACGATGGTGGTAGCCG 60.279 66.667 0.00 0.00 0.00 5.52
107 108 2.585247 GCGACGATGGTGGTAGCC 60.585 66.667 0.00 0.00 30.98 3.93
108 109 1.589196 GAGCGACGATGGTGGTAGC 60.589 63.158 0.00 0.00 36.44 3.58
109 110 0.172578 TTGAGCGACGATGGTGGTAG 59.827 55.000 0.00 0.00 0.00 3.18
110 111 0.108992 GTTGAGCGACGATGGTGGTA 60.109 55.000 0.00 0.00 0.00 3.25
111 112 1.374252 GTTGAGCGACGATGGTGGT 60.374 57.895 0.00 0.00 0.00 4.16
112 113 0.740868 ATGTTGAGCGACGATGGTGG 60.741 55.000 0.00 0.00 0.00 4.61
113 114 0.647410 GATGTTGAGCGACGATGGTG 59.353 55.000 0.00 0.00 0.00 4.17
114 115 0.460284 GGATGTTGAGCGACGATGGT 60.460 55.000 0.00 0.00 0.00 3.55
115 116 0.179100 AGGATGTTGAGCGACGATGG 60.179 55.000 0.00 0.00 0.00 3.51
116 117 1.645034 AAGGATGTTGAGCGACGATG 58.355 50.000 0.00 0.00 0.00 3.84
117 118 2.481449 GGTAAGGATGTTGAGCGACGAT 60.481 50.000 0.00 0.00 0.00 3.73
118 119 1.135199 GGTAAGGATGTTGAGCGACGA 60.135 52.381 0.00 0.00 0.00 4.20
119 120 1.278238 GGTAAGGATGTTGAGCGACG 58.722 55.000 0.00 0.00 0.00 5.12
120 121 1.653151 GGGTAAGGATGTTGAGCGAC 58.347 55.000 0.00 0.00 0.00 5.19
121 122 0.539986 GGGGTAAGGATGTTGAGCGA 59.460 55.000 0.00 0.00 0.00 4.93
122 123 0.810031 CGGGGTAAGGATGTTGAGCG 60.810 60.000 0.00 0.00 0.00 5.03
123 124 1.095807 GCGGGGTAAGGATGTTGAGC 61.096 60.000 0.00 0.00 0.00 4.26
124 125 0.810031 CGCGGGGTAAGGATGTTGAG 60.810 60.000 0.00 0.00 0.00 3.02
125 126 1.219664 CGCGGGGTAAGGATGTTGA 59.780 57.895 0.00 0.00 0.00 3.18
126 127 1.817941 CCGCGGGGTAAGGATGTTG 60.818 63.158 20.10 0.00 0.00 3.33
127 128 2.587889 CCGCGGGGTAAGGATGTT 59.412 61.111 20.10 0.00 0.00 2.71
128 129 4.171103 GCCGCGGGGTAAGGATGT 62.171 66.667 29.38 0.00 34.97 3.06
129 130 3.690685 TTGCCGCGGGGTAAGGATG 62.691 63.158 29.38 0.00 32.50 3.51
130 131 3.404438 TTGCCGCGGGGTAAGGAT 61.404 61.111 29.38 0.00 32.50 3.24
171 172 4.248842 TGGTGGTGGACGCTGGTG 62.249 66.667 0.00 0.00 0.00 4.17
172 173 4.250305 GTGGTGGTGGACGCTGGT 62.250 66.667 0.00 0.00 0.00 4.00
174 175 4.248842 TGGTGGTGGTGGACGCTG 62.249 66.667 0.00 0.00 0.00 5.18
175 176 4.250305 GTGGTGGTGGTGGACGCT 62.250 66.667 0.00 0.00 0.00 5.07
177 178 4.980805 CGGTGGTGGTGGTGGACG 62.981 72.222 0.00 0.00 0.00 4.79
178 179 4.636435 CCGGTGGTGGTGGTGGAC 62.636 72.222 0.00 0.00 0.00 4.02
184 185 4.467084 ATAGCGCCGGTGGTGGTG 62.467 66.667 29.06 0.00 44.01 4.17
185 186 4.467084 CATAGCGCCGGTGGTGGT 62.467 66.667 29.06 14.91 46.10 4.16
187 188 4.155733 TCCATAGCGCCGGTGGTG 62.156 66.667 29.06 13.51 34.61 4.17
188 189 3.849951 CTCCATAGCGCCGGTGGT 61.850 66.667 24.77 24.77 34.61 4.16
189 190 3.536917 TCTCCATAGCGCCGGTGG 61.537 66.667 18.41 15.06 0.00 4.61
190 191 2.279517 GTCTCCATAGCGCCGGTG 60.280 66.667 11.67 11.67 0.00 4.94
191 192 2.442272 AGTCTCCATAGCGCCGGT 60.442 61.111 2.29 0.00 0.00 5.28
192 193 2.028190 CAGTCTCCATAGCGCCGG 59.972 66.667 2.29 1.97 0.00 6.13
193 194 2.028190 CCAGTCTCCATAGCGCCG 59.972 66.667 2.29 0.00 0.00 6.46
194 195 1.227380 CACCAGTCTCCATAGCGCC 60.227 63.158 2.29 0.00 0.00 6.53
195 196 1.227380 CCACCAGTCTCCATAGCGC 60.227 63.158 0.00 0.00 0.00 5.92
196 197 1.227380 GCCACCAGTCTCCATAGCG 60.227 63.158 0.00 0.00 0.00 4.26
197 198 1.227380 CGCCACCAGTCTCCATAGC 60.227 63.158 0.00 0.00 0.00 2.97
198 199 1.227380 GCGCCACCAGTCTCCATAG 60.227 63.158 0.00 0.00 0.00 2.23
199 200 2.731571 GGCGCCACCAGTCTCCATA 61.732 63.158 24.80 0.00 38.86 2.74
200 201 4.101448 GGCGCCACCAGTCTCCAT 62.101 66.667 24.80 0.00 38.86 3.41
243 244 1.883084 CTCGACGTATGCAAGGGGC 60.883 63.158 0.00 0.00 45.13 5.80
244 245 1.883084 GCTCGACGTATGCAAGGGG 60.883 63.158 0.00 0.00 0.00 4.79
245 246 2.230940 CGCTCGACGTATGCAAGGG 61.231 63.158 0.00 0.00 36.87 3.95
246 247 3.299585 CGCTCGACGTATGCAAGG 58.700 61.111 0.00 0.00 36.87 3.61
255 256 2.968330 GAATCCCTCGACGCTCGACG 62.968 65.000 7.72 7.72 44.82 5.12
256 257 1.298488 GAATCCCTCGACGCTCGAC 60.298 63.158 6.09 0.00 44.82 4.20
258 259 1.009449 GAGAATCCCTCGACGCTCG 60.009 63.158 0.00 1.67 42.10 5.03
270 271 1.706287 GGAACGCGGCAAGGAGAATC 61.706 60.000 12.47 0.00 0.00 2.52
271 272 1.745489 GGAACGCGGCAAGGAGAAT 60.745 57.895 12.47 0.00 0.00 2.40
272 273 2.358247 GGAACGCGGCAAGGAGAA 60.358 61.111 12.47 0.00 0.00 2.87
273 274 4.388499 GGGAACGCGGCAAGGAGA 62.388 66.667 12.47 0.00 0.00 3.71
318 319 4.358841 TGGAATGGTGGCGGGGTG 62.359 66.667 0.00 0.00 0.00 4.61
319 320 4.360405 GTGGAATGGTGGCGGGGT 62.360 66.667 0.00 0.00 0.00 4.95
320 321 3.995506 GAGTGGAATGGTGGCGGGG 62.996 68.421 0.00 0.00 0.00 5.73
321 322 2.438434 GAGTGGAATGGTGGCGGG 60.438 66.667 0.00 0.00 0.00 6.13
322 323 2.438434 GGAGTGGAATGGTGGCGG 60.438 66.667 0.00 0.00 0.00 6.13
323 324 2.438434 GGGAGTGGAATGGTGGCG 60.438 66.667 0.00 0.00 0.00 5.69
324 325 1.379044 CAGGGAGTGGAATGGTGGC 60.379 63.158 0.00 0.00 0.00 5.01
325 326 1.379044 GCAGGGAGTGGAATGGTGG 60.379 63.158 0.00 0.00 0.00 4.61
326 327 1.379044 GGCAGGGAGTGGAATGGTG 60.379 63.158 0.00 0.00 0.00 4.17
327 328 1.852157 TGGCAGGGAGTGGAATGGT 60.852 57.895 0.00 0.00 0.00 3.55
328 329 1.379044 GTGGCAGGGAGTGGAATGG 60.379 63.158 0.00 0.00 0.00 3.16
329 330 1.746615 CGTGGCAGGGAGTGGAATG 60.747 63.158 0.00 0.00 0.00 2.67
330 331 2.671070 CGTGGCAGGGAGTGGAAT 59.329 61.111 0.00 0.00 0.00 3.01
331 332 3.636231 CCGTGGCAGGGAGTGGAA 61.636 66.667 21.34 0.00 0.00 3.53
334 335 4.767255 GAGCCGTGGCAGGGAGTG 62.767 72.222 29.20 3.60 44.88 3.51
348 349 4.864334 CATGCGGTGGGGAGGAGC 62.864 72.222 0.00 0.00 0.00 4.70
349 350 3.402681 ACATGCGGTGGGGAGGAG 61.403 66.667 0.00 0.00 0.00 3.69
350 351 3.716195 CACATGCGGTGGGGAGGA 61.716 66.667 0.00 0.00 44.04 3.71
361 362 2.439156 GTGGGGAGGAGCACATGC 60.439 66.667 0.00 0.00 42.49 4.06
362 363 2.273449 GGTGGGGAGGAGCACATG 59.727 66.667 0.00 0.00 0.00 3.21
363 364 3.402681 CGGTGGGGAGGAGCACAT 61.403 66.667 0.00 0.00 0.00 3.21
380 381 3.793144 CAAAGGAGGAGTGCGCGC 61.793 66.667 27.26 27.26 0.00 6.86
381 382 3.793144 GCAAAGGAGGAGTGCGCG 61.793 66.667 0.00 0.00 0.00 6.86
382 383 3.435186 GGCAAAGGAGGAGTGCGC 61.435 66.667 0.00 0.00 39.22 6.09
383 384 3.121030 CGGCAAAGGAGGAGTGCG 61.121 66.667 0.00 0.00 39.22 5.34
384 385 3.435186 GCGGCAAAGGAGGAGTGC 61.435 66.667 0.00 0.00 37.55 4.40
385 386 3.121030 CGCGGCAAAGGAGGAGTG 61.121 66.667 0.00 0.00 0.00 3.51
386 387 4.394712 CCGCGGCAAAGGAGGAGT 62.395 66.667 14.67 0.00 0.00 3.85
403 404 2.476499 GCAACGGCGAAGAAGAGC 59.524 61.111 16.62 2.44 0.00 4.09
404 405 3.169198 GGCAACGGCGAAGAAGAG 58.831 61.111 16.62 0.00 42.47 2.85
420 421 3.957535 GATGAATGGCGGCAGCGG 61.958 66.667 19.29 0.00 46.35 5.52
421 422 2.890109 GAGATGAATGGCGGCAGCG 61.890 63.158 19.29 0.00 46.35 5.18
422 423 1.505477 GAGAGATGAATGGCGGCAGC 61.505 60.000 19.29 12.70 44.18 5.25
423 424 0.883814 GGAGAGATGAATGGCGGCAG 60.884 60.000 19.29 0.00 0.00 4.85
424 425 1.146930 GGAGAGATGAATGGCGGCA 59.853 57.895 16.34 16.34 0.00 5.69
425 426 0.602372 GAGGAGAGATGAATGGCGGC 60.602 60.000 0.00 0.00 0.00 6.53
426 427 1.047002 AGAGGAGAGATGAATGGCGG 58.953 55.000 0.00 0.00 0.00 6.13
427 428 1.270199 CCAGAGGAGAGATGAATGGCG 60.270 57.143 0.00 0.00 0.00 5.69
428 429 2.045524 TCCAGAGGAGAGATGAATGGC 58.954 52.381 0.00 0.00 0.00 4.40
429 430 3.261390 GGATCCAGAGGAGAGATGAATGG 59.739 52.174 6.95 0.00 34.05 3.16
430 431 3.261390 GGGATCCAGAGGAGAGATGAATG 59.739 52.174 15.23 0.00 34.05 2.67
431 432 3.519667 GGGATCCAGAGGAGAGATGAAT 58.480 50.000 15.23 0.00 34.05 2.57
432 433 2.754526 CGGGATCCAGAGGAGAGATGAA 60.755 54.545 15.23 0.00 34.05 2.57
433 434 1.202989 CGGGATCCAGAGGAGAGATGA 60.203 57.143 15.23 0.00 34.05 2.92
434 435 1.255882 CGGGATCCAGAGGAGAGATG 58.744 60.000 15.23 0.00 34.05 2.90
435 436 0.541764 GCGGGATCCAGAGGAGAGAT 60.542 60.000 16.86 0.00 34.05 2.75
436 437 1.152652 GCGGGATCCAGAGGAGAGA 60.153 63.158 16.86 0.00 34.05 3.10
437 438 1.456518 TGCGGGATCCAGAGGAGAG 60.457 63.158 16.86 0.00 34.05 3.20
438 439 1.456518 CTGCGGGATCCAGAGGAGA 60.457 63.158 16.86 0.00 34.05 3.71
439 440 1.760086 ACTGCGGGATCCAGAGGAG 60.760 63.158 16.86 16.89 34.05 3.69
440 441 2.060383 CACTGCGGGATCCAGAGGA 61.060 63.158 16.86 5.64 35.55 3.71
441 442 1.617018 TTCACTGCGGGATCCAGAGG 61.617 60.000 16.86 9.27 34.47 3.69
442 443 0.460987 GTTCACTGCGGGATCCAGAG 60.461 60.000 16.86 12.05 34.47 3.35
443 444 1.596934 GTTCACTGCGGGATCCAGA 59.403 57.895 16.86 0.13 34.47 3.86
444 445 1.811266 CGTTCACTGCGGGATCCAG 60.811 63.158 15.23 11.38 36.41 3.86
445 446 2.264480 CGTTCACTGCGGGATCCA 59.736 61.111 15.23 0.00 0.00 3.41
446 447 2.511600 CCGTTCACTGCGGGATCC 60.512 66.667 1.92 1.92 44.98 3.36
452 453 1.082756 GCTTTCACCGTTCACTGCG 60.083 57.895 0.00 0.00 0.00 5.18
453 454 0.380378 TTGCTTTCACCGTTCACTGC 59.620 50.000 0.00 0.00 0.00 4.40
454 455 3.243035 TGAATTGCTTTCACCGTTCACTG 60.243 43.478 0.00 0.00 39.44 3.66
455 456 2.948979 TGAATTGCTTTCACCGTTCACT 59.051 40.909 0.00 0.00 39.44 3.41
456 457 3.300009 CTGAATTGCTTTCACCGTTCAC 58.700 45.455 0.00 0.00 39.44 3.18
457 458 2.287547 GCTGAATTGCTTTCACCGTTCA 60.288 45.455 0.00 0.00 39.44 3.18
458 459 2.030805 AGCTGAATTGCTTTCACCGTTC 60.031 45.455 0.00 0.00 40.93 3.95
459 460 1.956477 AGCTGAATTGCTTTCACCGTT 59.044 42.857 0.00 0.00 40.93 4.44
460 461 1.537202 GAGCTGAATTGCTTTCACCGT 59.463 47.619 0.00 0.00 44.17 4.83
461 462 1.536766 TGAGCTGAATTGCTTTCACCG 59.463 47.619 0.00 0.00 44.17 4.94
462 463 3.648339 TTGAGCTGAATTGCTTTCACC 57.352 42.857 0.00 0.00 44.17 4.02
463 464 5.045872 ACTTTTGAGCTGAATTGCTTTCAC 58.954 37.500 0.00 0.00 44.17 3.18
464 465 5.266733 ACTTTTGAGCTGAATTGCTTTCA 57.733 34.783 0.00 3.23 44.17 2.69
465 466 6.594284 AAACTTTTGAGCTGAATTGCTTTC 57.406 33.333 0.00 0.00 44.17 2.62
466 467 6.237915 CGAAAACTTTTGAGCTGAATTGCTTT 60.238 34.615 0.00 0.00 44.17 3.51
467 468 5.232838 CGAAAACTTTTGAGCTGAATTGCTT 59.767 36.000 0.00 0.00 44.17 3.91
471 472 4.741676 CAGCGAAAACTTTTGAGCTGAATT 59.258 37.500 23.77 0.00 45.78 2.17
477 478 3.240631 GTCAACAGCGAAAACTTTTGAGC 59.759 43.478 0.00 0.00 37.11 4.26
479 480 3.442273 AGGTCAACAGCGAAAACTTTTGA 59.558 39.130 0.00 0.00 34.76 2.69
484 485 2.365582 ACAAGGTCAACAGCGAAAACT 58.634 42.857 0.00 0.00 0.00 2.66
489 490 3.006430 TCATCTTACAAGGTCAACAGCGA 59.994 43.478 0.00 0.00 0.00 4.93
490 491 3.325870 TCATCTTACAAGGTCAACAGCG 58.674 45.455 0.00 0.00 0.00 5.18
495 496 2.677836 GCGCATCATCTTACAAGGTCAA 59.322 45.455 0.30 0.00 0.00 3.18
496 497 2.279741 GCGCATCATCTTACAAGGTCA 58.720 47.619 0.30 0.00 0.00 4.02
502 503 0.179113 TCTGCGCGCATCATCTTACA 60.179 50.000 36.48 7.33 0.00 2.41
504 505 0.385390 TCTCTGCGCGCATCATCTTA 59.615 50.000 36.48 13.03 0.00 2.10
512 513 2.862436 CACAAATCTCTGCGCGCA 59.138 55.556 34.12 34.12 0.00 6.09
515 516 1.513586 GCAGCACAAATCTCTGCGC 60.514 57.895 0.00 0.00 42.86 6.09
534 535 4.005650 ACGTCCTTGTAGTCGTCTAATCA 58.994 43.478 0.00 0.00 30.71 2.57
538 539 2.413112 CGAACGTCCTTGTAGTCGTCTA 59.587 50.000 0.00 0.00 35.49 2.59
544 545 1.291272 GCCCGAACGTCCTTGTAGT 59.709 57.895 0.00 0.00 0.00 2.73
563 564 3.782443 CAGGTACCCGGGCTGGAC 61.782 72.222 24.08 13.78 42.00 4.02
564 565 3.326385 ATCAGGTACCCGGGCTGGA 62.326 63.158 24.08 12.09 42.00 3.86
565 566 2.768344 ATCAGGTACCCGGGCTGG 60.768 66.667 24.08 5.01 37.55 4.85
566 567 2.367202 ACATCAGGTACCCGGGCTG 61.367 63.158 24.08 20.35 0.00 4.85
567 568 2.040606 ACATCAGGTACCCGGGCT 59.959 61.111 24.08 6.89 0.00 5.19
569 570 1.686325 CCTCACATCAGGTACCCGGG 61.686 65.000 22.25 22.25 0.00 5.73
578 579 7.275183 TCCAAATGATAAGTACCTCACATCAG 58.725 38.462 0.00 0.00 0.00 2.90
611 612 6.206634 TGCTTGTTTATTCGGAGTCTCAAAAT 59.793 34.615 1.47 3.52 0.00 1.82
625 626 6.924111 AGATGGAATTCGTTGCTTGTTTATT 58.076 32.000 0.00 0.00 0.00 1.40
660 661 3.508793 ACGAGTAATTTGGAACGGAGAGA 59.491 43.478 0.00 0.00 0.00 3.10
662 663 3.947910 ACGAGTAATTTGGAACGGAGA 57.052 42.857 0.00 0.00 0.00 3.71
663 664 3.991773 TCAACGAGTAATTTGGAACGGAG 59.008 43.478 0.00 0.00 0.00 4.63
664 665 3.992643 TCAACGAGTAATTTGGAACGGA 58.007 40.909 0.00 0.00 0.00 4.69
665 666 4.449743 TCTTCAACGAGTAATTTGGAACGG 59.550 41.667 0.00 0.00 0.00 4.44
666 667 5.585500 TCTTCAACGAGTAATTTGGAACG 57.415 39.130 0.00 0.00 0.00 3.95
667 668 9.543018 CTATTTCTTCAACGAGTAATTTGGAAC 57.457 33.333 0.00 0.00 0.00 3.62
668 669 9.496873 TCTATTTCTTCAACGAGTAATTTGGAA 57.503 29.630 0.00 0.00 0.00 3.53
669 670 9.667107 ATCTATTTCTTCAACGAGTAATTTGGA 57.333 29.630 0.00 0.00 0.00 3.53
670 671 9.708222 CATCTATTTCTTCAACGAGTAATTTGG 57.292 33.333 0.00 0.00 0.00 3.28
712 713 9.533831 ACACATGTATGGATGTATCTAGATGTA 57.466 33.333 15.79 4.44 34.69 2.29
713 714 8.427902 ACACATGTATGGATGTATCTAGATGT 57.572 34.615 15.79 1.25 34.69 3.06
723 724 8.826710 CGAATTACTTTACACATGTATGGATGT 58.173 33.333 0.00 0.00 37.01 3.06
724 725 8.282592 CCGAATTACTTTACACATGTATGGATG 58.717 37.037 0.00 0.00 0.00 3.51
725 726 8.208224 TCCGAATTACTTTACACATGTATGGAT 58.792 33.333 0.00 0.00 0.00 3.41
726 727 7.557724 TCCGAATTACTTTACACATGTATGGA 58.442 34.615 0.00 0.00 0.00 3.41
727 728 7.780008 TCCGAATTACTTTACACATGTATGG 57.220 36.000 0.00 0.00 0.00 2.74
728 729 7.844169 CGTTCCGAATTACTTTACACATGTATG 59.156 37.037 0.00 0.00 0.00 2.39
729 730 7.010738 CCGTTCCGAATTACTTTACACATGTAT 59.989 37.037 0.00 0.00 0.00 2.29
730 731 6.310956 CCGTTCCGAATTACTTTACACATGTA 59.689 38.462 0.00 0.00 0.00 2.29
731 732 5.121142 CCGTTCCGAATTACTTTACACATGT 59.879 40.000 0.00 0.00 0.00 3.21
732 733 5.349270 TCCGTTCCGAATTACTTTACACATG 59.651 40.000 0.00 0.00 0.00 3.21
733 734 5.481105 TCCGTTCCGAATTACTTTACACAT 58.519 37.500 0.00 0.00 0.00 3.21
734 735 4.880759 TCCGTTCCGAATTACTTTACACA 58.119 39.130 0.00 0.00 0.00 3.72
735 736 4.328169 CCTCCGTTCCGAATTACTTTACAC 59.672 45.833 0.00 0.00 0.00 2.90
736 737 4.497300 CCTCCGTTCCGAATTACTTTACA 58.503 43.478 0.00 0.00 0.00 2.41
737 738 3.867493 CCCTCCGTTCCGAATTACTTTAC 59.133 47.826 0.00 0.00 0.00 2.01
738 739 3.768757 TCCCTCCGTTCCGAATTACTTTA 59.231 43.478 0.00 0.00 0.00 1.85
739 740 2.568509 TCCCTCCGTTCCGAATTACTTT 59.431 45.455 0.00 0.00 0.00 2.66
740 741 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
741 742 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
742 743 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
743 744 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
744 745 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
745 746 1.962100 GATACTCCCTCCGTTCCGAAT 59.038 52.381 0.00 0.00 0.00 3.34
746 747 1.341285 TGATACTCCCTCCGTTCCGAA 60.341 52.381 0.00 0.00 0.00 4.30
747 748 0.256752 TGATACTCCCTCCGTTCCGA 59.743 55.000 0.00 0.00 0.00 4.55
748 749 1.108776 TTGATACTCCCTCCGTTCCG 58.891 55.000 0.00 0.00 0.00 4.30
749 750 3.840124 ATTTGATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
750 751 5.526479 GGTTTATTTGATACTCCCTCCGTTC 59.474 44.000 0.00 0.00 0.00 3.95
751 752 5.434408 GGTTTATTTGATACTCCCTCCGTT 58.566 41.667 0.00 0.00 0.00 4.44
752 753 4.141551 GGGTTTATTTGATACTCCCTCCGT 60.142 45.833 0.00 0.00 0.00 4.69
753 754 4.141574 TGGGTTTATTTGATACTCCCTCCG 60.142 45.833 0.00 0.00 35.00 4.63
754 755 5.104067 AGTGGGTTTATTTGATACTCCCTCC 60.104 44.000 0.00 0.00 35.00 4.30
755 756 5.823045 CAGTGGGTTTATTTGATACTCCCTC 59.177 44.000 0.00 0.00 35.00 4.30
756 757 5.491078 TCAGTGGGTTTATTTGATACTCCCT 59.509 40.000 0.00 0.00 35.00 4.20
757 758 5.751586 TCAGTGGGTTTATTTGATACTCCC 58.248 41.667 0.00 0.00 0.00 4.30
758 759 6.263168 CCATCAGTGGGTTTATTTGATACTCC 59.737 42.308 0.00 0.00 42.11 3.85
759 760 7.264373 CCATCAGTGGGTTTATTTGATACTC 57.736 40.000 0.00 0.00 42.11 2.59
827 844 9.943465 CTTTATCGCAATTTTCTTTCTTTTAGC 57.057 29.630 0.00 0.00 0.00 3.09
831 848 8.215899 CGACTTTATCGCAATTTTCTTTCTTT 57.784 30.769 0.00 0.00 45.52 2.52
832 849 7.781763 CGACTTTATCGCAATTTTCTTTCTT 57.218 32.000 0.00 0.00 45.52 2.52
848 865 1.625616 CGACGAGGCAACGACTTTAT 58.374 50.000 10.66 0.00 46.39 1.40
909 927 3.564027 GCTGCACGATACCGCACC 61.564 66.667 0.00 0.00 39.95 5.01
1474 1492 3.991536 GAAGAGGAGGTCGGCGTGC 62.992 68.421 6.85 0.68 0.00 5.34
1951 1972 4.555313 CGAACATGACTGAACAGCAACAAT 60.555 41.667 0.00 0.00 0.00 2.71
2247 2278 9.927668 CCATATAACTGATTGTTTCACCTTTTT 57.072 29.630 0.00 0.00 39.89 1.94
2248 2279 9.308000 TCCATATAACTGATTGTTTCACCTTTT 57.692 29.630 0.00 0.00 39.89 2.27
2374 3506 2.579787 GCGTCATCGTCCGGACAG 60.580 66.667 32.80 24.26 39.49 3.51
2378 3510 1.226974 ATCTTGCGTCATCGTCCGG 60.227 57.895 0.00 0.00 39.49 5.14
2382 3514 2.094182 AGTTACCATCTTGCGTCATCGT 60.094 45.455 0.00 0.00 39.49 3.73
2383 3515 2.540515 AGTTACCATCTTGCGTCATCG 58.459 47.619 0.00 0.00 40.37 3.84
2384 3516 5.107837 CGAATAGTTACCATCTTGCGTCATC 60.108 44.000 0.00 0.00 0.00 2.92
2385 3517 4.745125 CGAATAGTTACCATCTTGCGTCAT 59.255 41.667 0.00 0.00 0.00 3.06
2410 3564 2.571757 CGCCGTAGCAGGAGTTGA 59.428 61.111 0.00 0.00 39.83 3.18
2464 3618 6.325984 ACACCTTATGTTTTCCAGATCTGGC 61.326 44.000 33.39 20.96 44.56 4.85
2510 3664 2.280524 CAAGGTTCGTCGGCCACA 60.281 61.111 2.24 0.00 0.00 4.17
2606 3760 2.125106 GGTGATGCGTGGTCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
2624 3778 2.545537 AACCTGTCGAAAGAAGGGAC 57.454 50.000 3.47 0.00 45.01 4.46
2625 3779 3.556423 GCTAAACCTGTCGAAAGAAGGGA 60.556 47.826 3.47 0.00 45.01 4.20
2633 3799 4.471904 AGATCATGCTAAACCTGTCGAA 57.528 40.909 0.00 0.00 0.00 3.71
2645 3811 2.030540 GCACAACACACAAGATCATGCT 60.031 45.455 0.00 0.00 0.00 3.79
2662 3831 3.143338 TGCAGGAACGGTAGCACA 58.857 55.556 0.00 0.00 31.05 4.57
2684 3853 5.942961 AGAGTAGAAAGTCCATATCTCCGA 58.057 41.667 0.00 0.00 0.00 4.55
2692 3861 3.297736 CCCGGTAGAGTAGAAAGTCCAT 58.702 50.000 0.00 0.00 0.00 3.41
2710 3879 1.339631 TGTGGAAGTAATGGAAGCCCG 60.340 52.381 0.00 0.00 34.29 6.13
2746 3915 3.006940 CCAATGACGCTAGGCACTTTTA 58.993 45.455 0.00 0.00 38.86 1.52
2905 4074 5.815581 AGGATGGCACTAAGTGATTAACAA 58.184 37.500 0.00 0.00 35.23 2.83
2950 4119 4.072131 CCTAGAGCATGAGAGTAGAGACC 58.928 52.174 0.00 0.00 0.00 3.85
2964 4133 3.427098 CGTGAACGACATAACCTAGAGCA 60.427 47.826 0.00 0.00 43.02 4.26
3011 4180 8.545229 GATGGATAGAAAGTGAAGGTCATATG 57.455 38.462 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.