Multiple sequence alignment - TraesCS2A01G380900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G380900 chr2A 100.000 4264 0 0 1 4264 624393333 624397596 0.000000e+00 7875.0
1 TraesCS2A01G380900 chr2A 93.093 3576 175 32 736 4264 624446874 624450424 0.000000e+00 5169.0
2 TraesCS2A01G380900 chr2A 89.458 2988 215 56 570 3501 624457839 624460782 0.000000e+00 3681.0
3 TraesCS2A01G380900 chr2A 88.052 2628 256 38 932 3529 624359498 624362097 0.000000e+00 3061.0
4 TraesCS2A01G380900 chr2A 79.778 361 32 22 3838 4167 624461115 624461465 1.540000e-54 224.0
5 TraesCS2A01G380900 chr2A 89.888 89 5 3 570 658 624446666 624446750 1.250000e-20 111.0
6 TraesCS2A01G380900 chr2A 95.122 41 2 0 698 738 624446766 624446806 9.900000e-07 65.8
7 TraesCS2A01G380900 chr2D 93.445 3753 167 32 573 4258 481688184 481691924 0.000000e+00 5494.0
8 TraesCS2A01G380900 chr2D 93.982 3074 150 14 893 3938 481655978 481659044 0.000000e+00 4619.0
9 TraesCS2A01G380900 chr2D 89.939 2972 234 29 570 3504 481961037 481963980 0.000000e+00 3771.0
10 TraesCS2A01G380900 chr2D 88.397 2982 238 51 570 3504 481987969 481990889 0.000000e+00 3491.0
11 TraesCS2A01G380900 chr2D 88.514 296 11 7 570 850 481655688 481655975 1.900000e-88 337.0
12 TraesCS2A01G380900 chr2D 81.481 351 39 18 3825 4167 481964294 481964626 9.090000e-67 265.0
13 TraesCS2A01G380900 chr2D 80.791 354 44 20 3825 4167 481991203 481991543 5.470000e-64 255.0
14 TraesCS2A01G380900 chr2B 91.942 3748 214 39 570 4258 565188551 565192269 0.000000e+00 5168.0
15 TraesCS2A01G380900 chr2B 90.169 3489 216 59 570 3986 565076042 565079475 0.000000e+00 4425.0
16 TraesCS2A01G380900 chr2B 88.767 2831 221 44 698 3504 565209751 565212508 0.000000e+00 3376.0
17 TraesCS2A01G380900 chr2B 87.729 2624 261 39 932 3529 564920762 564923350 0.000000e+00 3005.0
18 TraesCS2A01G380900 chr2B 94.149 188 11 0 4077 4264 565081063 565081250 1.940000e-73 287.0
19 TraesCS2A01G380900 chr2B 81.746 378 33 19 3825 4167 565212822 565213198 2.510000e-72 283.0
20 TraesCS2A01G380900 chr2B 79.259 405 31 26 491 857 565075941 565076330 2.560000e-57 233.0
21 TraesCS2A01G380900 chr2B 87.421 159 11 6 3978 4127 565080900 565081058 1.580000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G380900 chr2A 624393333 624397596 4263 False 7875.000000 7875 100.0000 1 4264 1 chr2A.!!$F2 4263
1 TraesCS2A01G380900 chr2A 624359498 624362097 2599 False 3061.000000 3061 88.0520 932 3529 1 chr2A.!!$F1 2597
2 TraesCS2A01G380900 chr2A 624457839 624461465 3626 False 1952.500000 3681 84.6180 570 4167 2 chr2A.!!$F4 3597
3 TraesCS2A01G380900 chr2A 624446666 624450424 3758 False 1781.933333 5169 92.7010 570 4264 3 chr2A.!!$F3 3694
4 TraesCS2A01G380900 chr2D 481688184 481691924 3740 False 5494.000000 5494 93.4450 573 4258 1 chr2D.!!$F1 3685
5 TraesCS2A01G380900 chr2D 481655688 481659044 3356 False 2478.000000 4619 91.2480 570 3938 2 chr2D.!!$F2 3368
6 TraesCS2A01G380900 chr2D 481961037 481964626 3589 False 2018.000000 3771 85.7100 570 4167 2 chr2D.!!$F3 3597
7 TraesCS2A01G380900 chr2D 481987969 481991543 3574 False 1873.000000 3491 84.5940 570 4167 2 chr2D.!!$F4 3597
8 TraesCS2A01G380900 chr2B 565188551 565192269 3718 False 5168.000000 5168 91.9420 570 4258 1 chr2B.!!$F2 3688
9 TraesCS2A01G380900 chr2B 564920762 564923350 2588 False 3005.000000 3005 87.7290 932 3529 1 chr2B.!!$F1 2597
10 TraesCS2A01G380900 chr2B 565209751 565213198 3447 False 1829.500000 3376 85.2565 698 4167 2 chr2B.!!$F4 3469
11 TraesCS2A01G380900 chr2B 565075941 565081250 5309 False 1279.750000 4425 87.7495 491 4264 4 chr2B.!!$F3 3773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.107703 CGTCCCATGGCTAGCTTGAA 60.108 55.0 15.72 0.0 0.00 2.69 F
261 262 0.250553 CTTACAGACGGCCCCACAAA 60.251 55.0 0.00 0.0 0.00 2.83 F
262 263 0.535553 TTACAGACGGCCCCACAAAC 60.536 55.0 0.00 0.0 0.00 2.93 F
277 278 0.821711 CAAACCTCAAGGCACGGGAA 60.822 55.0 0.00 0.0 39.32 3.97 F
278 279 0.822121 AAACCTCAAGGCACGGGAAC 60.822 55.0 0.00 0.0 39.32 3.62 F
566 572 0.882927 CAGCCCCAACGAAACGAGAA 60.883 55.0 0.00 0.0 0.00 2.87 F
2663 2922 0.748450 TGTCCTCGACGTTCTTGGTT 59.252 50.0 0.00 0.0 34.95 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 2061 1.821136 GCCTCAGCAGCATTAACCTTT 59.179 47.619 0.00 0.0 39.53 3.11 R
2078 2337 2.158696 GGAGCTGCCTTCAAGGATATGT 60.159 50.000 7.98 0.0 37.67 2.29 R
2168 2427 4.758251 TGCGGTGATGTGCGGAGG 62.758 66.667 0.00 0.0 0.00 4.30 R
2387 2646 3.668447 GTTCACCAGCTCTGAGAATTGA 58.332 45.455 9.28 2.0 31.09 2.57 R
2495 2754 1.690219 CGGAGCAGTAGGAGGCCATT 61.690 60.000 5.01 0.0 0.00 3.16 R
2741 3000 1.548269 GTGCTCAGTGTCTTCCTAGCT 59.452 52.381 0.00 0.0 0.00 3.32 R
3650 3936 0.170784 GAGAAGTCCTCGTTCCCGTC 59.829 60.000 0.00 0.0 35.01 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.890552 AGGAGATCCTGTTCCATGCT 58.109 50.000 0.00 0.00 46.55 3.79
26 27 1.489649 AGGAGATCCTGTTCCATGCTG 59.510 52.381 0.00 0.00 46.55 4.41
27 28 1.487976 GGAGATCCTGTTCCATGCTGA 59.512 52.381 0.00 0.00 33.55 4.26
28 29 2.092753 GGAGATCCTGTTCCATGCTGAA 60.093 50.000 0.00 0.00 33.55 3.02
29 30 3.614092 GAGATCCTGTTCCATGCTGAAA 58.386 45.455 0.00 0.00 0.00 2.69
30 31 3.350833 AGATCCTGTTCCATGCTGAAAC 58.649 45.455 0.00 0.00 0.00 2.78
31 32 1.909700 TCCTGTTCCATGCTGAAACC 58.090 50.000 0.00 0.00 0.00 3.27
32 33 0.523072 CCTGTTCCATGCTGAAACCG 59.477 55.000 0.00 0.00 0.00 4.44
33 34 1.238439 CTGTTCCATGCTGAAACCGT 58.762 50.000 0.00 0.00 0.00 4.83
34 35 0.950836 TGTTCCATGCTGAAACCGTG 59.049 50.000 0.00 0.00 0.00 4.94
35 36 0.240945 GTTCCATGCTGAAACCGTGG 59.759 55.000 0.00 0.00 40.07 4.94
36 37 0.109532 TTCCATGCTGAAACCGTGGA 59.890 50.000 0.00 0.00 44.44 4.02
37 38 0.109532 TCCATGCTGAAACCGTGGAA 59.890 50.000 0.10 0.00 43.48 3.53
38 39 1.176527 CCATGCTGAAACCGTGGAAT 58.823 50.000 0.00 0.00 40.98 3.01
39 40 1.545582 CCATGCTGAAACCGTGGAATT 59.454 47.619 0.00 0.00 40.98 2.17
40 41 2.415893 CCATGCTGAAACCGTGGAATTC 60.416 50.000 0.00 0.00 40.98 2.17
41 42 2.270352 TGCTGAAACCGTGGAATTCT 57.730 45.000 5.23 0.00 0.00 2.40
42 43 2.582052 TGCTGAAACCGTGGAATTCTT 58.418 42.857 5.23 0.00 0.00 2.52
43 44 2.293122 TGCTGAAACCGTGGAATTCTTG 59.707 45.455 5.23 0.00 0.00 3.02
44 45 2.922335 GCTGAAACCGTGGAATTCTTGC 60.922 50.000 5.23 3.26 0.00 4.01
45 46 2.554032 CTGAAACCGTGGAATTCTTGCT 59.446 45.455 5.23 0.00 0.00 3.91
46 47 3.745799 TGAAACCGTGGAATTCTTGCTA 58.254 40.909 5.23 0.00 0.00 3.49
47 48 4.331968 TGAAACCGTGGAATTCTTGCTAT 58.668 39.130 5.23 0.00 0.00 2.97
48 49 5.492895 TGAAACCGTGGAATTCTTGCTATA 58.507 37.500 5.23 0.00 0.00 1.31
49 50 5.941058 TGAAACCGTGGAATTCTTGCTATAA 59.059 36.000 5.23 0.00 0.00 0.98
50 51 5.813080 AACCGTGGAATTCTTGCTATAAC 57.187 39.130 5.23 0.00 0.00 1.89
51 52 4.839121 ACCGTGGAATTCTTGCTATAACA 58.161 39.130 5.23 0.00 0.00 2.41
52 53 4.634443 ACCGTGGAATTCTTGCTATAACAC 59.366 41.667 5.23 0.91 0.00 3.32
53 54 4.876107 CCGTGGAATTCTTGCTATAACACT 59.124 41.667 5.23 0.00 0.00 3.55
54 55 5.006746 CCGTGGAATTCTTGCTATAACACTC 59.993 44.000 5.23 0.00 0.00 3.51
55 56 5.580691 CGTGGAATTCTTGCTATAACACTCA 59.419 40.000 5.23 0.00 0.00 3.41
56 57 6.092122 CGTGGAATTCTTGCTATAACACTCAA 59.908 38.462 5.23 0.00 0.00 3.02
57 58 7.360861 CGTGGAATTCTTGCTATAACACTCAAA 60.361 37.037 5.23 0.00 0.00 2.69
58 59 8.462016 GTGGAATTCTTGCTATAACACTCAAAT 58.538 33.333 5.23 0.00 0.00 2.32
59 60 9.023962 TGGAATTCTTGCTATAACACTCAAATT 57.976 29.630 5.23 0.00 0.00 1.82
60 61 9.294030 GGAATTCTTGCTATAACACTCAAATTG 57.706 33.333 5.23 0.00 0.00 2.32
64 65 9.844790 TTCTTGCTATAACACTCAAATTGATTG 57.155 29.630 11.11 11.11 40.58 2.67
65 66 8.461222 TCTTGCTATAACACTCAAATTGATTGG 58.539 33.333 15.98 3.36 39.62 3.16
66 67 6.563422 TGCTATAACACTCAAATTGATTGGC 58.437 36.000 15.98 10.21 39.62 4.52
67 68 5.979517 GCTATAACACTCAAATTGATTGGCC 59.020 40.000 15.98 0.00 39.62 5.36
68 69 5.999205 ATAACACTCAAATTGATTGGCCA 57.001 34.783 15.98 0.00 39.62 5.36
69 70 3.665745 ACACTCAAATTGATTGGCCAC 57.334 42.857 3.88 0.00 39.62 5.01
70 71 2.030007 ACACTCAAATTGATTGGCCACG 60.030 45.455 3.88 0.00 39.62 4.94
71 72 2.228582 CACTCAAATTGATTGGCCACGA 59.771 45.455 3.88 0.00 39.62 4.35
72 73 2.890311 ACTCAAATTGATTGGCCACGAA 59.110 40.909 3.88 0.00 39.62 3.85
73 74 3.057315 ACTCAAATTGATTGGCCACGAAG 60.057 43.478 3.88 0.00 39.62 3.79
74 75 2.890311 TCAAATTGATTGGCCACGAAGT 59.110 40.909 3.88 0.00 40.08 3.01
75 76 3.320541 TCAAATTGATTGGCCACGAAGTT 59.679 39.130 3.88 0.59 38.10 2.66
76 77 4.057432 CAAATTGATTGGCCACGAAGTTT 58.943 39.130 3.88 1.42 34.75 2.66
77 78 4.335400 AATTGATTGGCCACGAAGTTTT 57.665 36.364 3.88 0.00 41.61 2.43
78 79 3.363341 TTGATTGGCCACGAAGTTTTC 57.637 42.857 3.88 0.00 41.61 2.29
79 80 2.302260 TGATTGGCCACGAAGTTTTCA 58.698 42.857 3.88 0.00 41.61 2.69
80 81 2.034053 TGATTGGCCACGAAGTTTTCAC 59.966 45.455 3.88 0.00 41.61 3.18
81 82 1.757682 TTGGCCACGAAGTTTTCACT 58.242 45.000 3.88 0.00 41.61 3.41
82 83 1.305201 TGGCCACGAAGTTTTCACTC 58.695 50.000 0.00 0.00 41.61 3.51
83 84 0.234884 GGCCACGAAGTTTTCACTCG 59.765 55.000 0.00 0.00 41.61 4.18
84 85 0.935196 GCCACGAAGTTTTCACTCGT 59.065 50.000 0.00 0.00 41.61 4.18
85 86 1.070776 GCCACGAAGTTTTCACTCGTC 60.071 52.381 0.00 0.00 41.61 4.20
86 87 1.525619 CCACGAAGTTTTCACTCGTCC 59.474 52.381 0.00 0.00 41.61 4.79
87 88 1.525619 CACGAAGTTTTCACTCGTCCC 59.474 52.381 0.00 0.00 41.61 4.46
88 89 1.137479 ACGAAGTTTTCACTCGTCCCA 59.863 47.619 0.00 0.00 37.78 4.37
89 90 2.224209 ACGAAGTTTTCACTCGTCCCAT 60.224 45.455 0.00 0.00 37.78 4.00
90 91 2.157668 CGAAGTTTTCACTCGTCCCATG 59.842 50.000 0.00 0.00 30.45 3.66
91 92 2.185004 AGTTTTCACTCGTCCCATGG 57.815 50.000 4.14 4.14 0.00 3.66
92 93 0.521735 GTTTTCACTCGTCCCATGGC 59.478 55.000 6.09 0.00 0.00 4.40
93 94 0.400213 TTTTCACTCGTCCCATGGCT 59.600 50.000 6.09 0.00 0.00 4.75
94 95 1.271856 TTTCACTCGTCCCATGGCTA 58.728 50.000 6.09 0.00 0.00 3.93
95 96 0.824109 TTCACTCGTCCCATGGCTAG 59.176 55.000 6.09 2.77 0.00 3.42
96 97 1.227380 CACTCGTCCCATGGCTAGC 60.227 63.158 6.09 6.04 0.00 3.42
97 98 1.381872 ACTCGTCCCATGGCTAGCT 60.382 57.895 15.72 0.00 0.00 3.32
98 99 0.978146 ACTCGTCCCATGGCTAGCTT 60.978 55.000 15.72 0.00 0.00 3.74
99 100 0.531532 CTCGTCCCATGGCTAGCTTG 60.532 60.000 15.72 12.45 0.00 4.01
100 101 0.975556 TCGTCCCATGGCTAGCTTGA 60.976 55.000 15.72 0.00 0.00 3.02
101 102 0.107703 CGTCCCATGGCTAGCTTGAA 60.108 55.000 15.72 0.00 0.00 2.69
102 103 1.678728 CGTCCCATGGCTAGCTTGAAA 60.679 52.381 15.72 2.17 0.00 2.69
103 104 2.446435 GTCCCATGGCTAGCTTGAAAA 58.554 47.619 15.72 0.00 0.00 2.29
104 105 2.825532 GTCCCATGGCTAGCTTGAAAAA 59.174 45.455 15.72 0.00 0.00 1.94
171 172 9.692325 AAAAGATGCTCAAGGATTCTAATAAGT 57.308 29.630 0.00 0.00 0.00 2.24
172 173 8.674263 AAGATGCTCAAGGATTCTAATAAGTG 57.326 34.615 0.00 0.00 0.00 3.16
173 174 6.709846 AGATGCTCAAGGATTCTAATAAGTGC 59.290 38.462 0.00 0.00 0.00 4.40
174 175 5.994250 TGCTCAAGGATTCTAATAAGTGCT 58.006 37.500 0.00 0.00 0.00 4.40
175 176 7.124573 TGCTCAAGGATTCTAATAAGTGCTA 57.875 36.000 0.00 0.00 0.00 3.49
176 177 7.564793 TGCTCAAGGATTCTAATAAGTGCTAA 58.435 34.615 0.00 0.00 0.00 3.09
177 178 8.213679 TGCTCAAGGATTCTAATAAGTGCTAAT 58.786 33.333 0.00 0.00 0.00 1.73
178 179 8.502387 GCTCAAGGATTCTAATAAGTGCTAATG 58.498 37.037 0.00 0.00 0.00 1.90
179 180 9.770097 CTCAAGGATTCTAATAAGTGCTAATGA 57.230 33.333 0.00 0.00 0.00 2.57
242 243 9.836076 AGAAATAAAATTAAACAGCTAACGACC 57.164 29.630 0.00 0.00 0.00 4.79
243 244 9.836076 GAAATAAAATTAAACAGCTAACGACCT 57.164 29.630 0.00 0.00 0.00 3.85
247 248 7.733402 AAATTAAACAGCTAACGACCTTACA 57.267 32.000 0.00 0.00 0.00 2.41
248 249 6.963049 ATTAAACAGCTAACGACCTTACAG 57.037 37.500 0.00 0.00 0.00 2.74
249 250 4.595762 AAACAGCTAACGACCTTACAGA 57.404 40.909 0.00 0.00 0.00 3.41
250 251 3.572604 ACAGCTAACGACCTTACAGAC 57.427 47.619 0.00 0.00 0.00 3.51
251 252 2.095364 ACAGCTAACGACCTTACAGACG 60.095 50.000 0.00 0.00 0.00 4.18
252 253 1.471684 AGCTAACGACCTTACAGACGG 59.528 52.381 0.00 0.00 0.00 4.79
253 254 1.905449 CTAACGACCTTACAGACGGC 58.095 55.000 0.00 0.00 0.00 5.68
254 255 0.527565 TAACGACCTTACAGACGGCC 59.472 55.000 0.00 0.00 0.00 6.13
255 256 2.163601 AACGACCTTACAGACGGCCC 62.164 60.000 0.00 0.00 0.00 5.80
256 257 2.582978 GACCTTACAGACGGCCCC 59.417 66.667 0.00 0.00 0.00 5.80
257 258 2.203877 ACCTTACAGACGGCCCCA 60.204 61.111 0.00 0.00 0.00 4.96
258 259 2.267961 CCTTACAGACGGCCCCAC 59.732 66.667 0.00 0.00 0.00 4.61
259 260 2.589157 CCTTACAGACGGCCCCACA 61.589 63.158 0.00 0.00 0.00 4.17
260 261 1.373435 CTTACAGACGGCCCCACAA 59.627 57.895 0.00 0.00 0.00 3.33
261 262 0.250553 CTTACAGACGGCCCCACAAA 60.251 55.000 0.00 0.00 0.00 2.83
262 263 0.535553 TTACAGACGGCCCCACAAAC 60.536 55.000 0.00 0.00 0.00 2.93
263 264 2.400269 TACAGACGGCCCCACAAACC 62.400 60.000 0.00 0.00 0.00 3.27
264 265 3.175710 AGACGGCCCCACAAACCT 61.176 61.111 0.00 0.00 0.00 3.50
265 266 2.671963 GACGGCCCCACAAACCTC 60.672 66.667 0.00 0.00 0.00 3.85
266 267 3.485346 GACGGCCCCACAAACCTCA 62.485 63.158 0.00 0.00 0.00 3.86
267 268 2.203422 CGGCCCCACAAACCTCAA 60.203 61.111 0.00 0.00 0.00 3.02
268 269 2.268076 CGGCCCCACAAACCTCAAG 61.268 63.158 0.00 0.00 0.00 3.02
269 270 1.908299 GGCCCCACAAACCTCAAGG 60.908 63.158 0.00 0.00 42.17 3.61
270 271 2.574018 GCCCCACAAACCTCAAGGC 61.574 63.158 0.00 0.00 39.32 4.35
271 272 1.152567 CCCCACAAACCTCAAGGCA 60.153 57.895 0.00 0.00 39.32 4.75
272 273 1.463553 CCCCACAAACCTCAAGGCAC 61.464 60.000 0.00 0.00 39.32 5.01
273 274 1.654220 CCACAAACCTCAAGGCACG 59.346 57.895 0.00 0.00 39.32 5.34
274 275 1.654220 CACAAACCTCAAGGCACGG 59.346 57.895 0.00 0.00 39.32 4.94
275 276 1.528309 ACAAACCTCAAGGCACGGG 60.528 57.895 0.00 0.00 39.32 5.28
276 277 1.228124 CAAACCTCAAGGCACGGGA 60.228 57.895 0.00 0.00 39.32 5.14
277 278 0.821711 CAAACCTCAAGGCACGGGAA 60.822 55.000 0.00 0.00 39.32 3.97
278 279 0.822121 AAACCTCAAGGCACGGGAAC 60.822 55.000 0.00 0.00 39.32 3.62
292 293 2.566952 GGGAACGCTTGAAATCATGG 57.433 50.000 0.00 0.00 0.00 3.66
293 294 2.091541 GGGAACGCTTGAAATCATGGA 58.908 47.619 0.00 0.00 0.00 3.41
294 295 2.491693 GGGAACGCTTGAAATCATGGAA 59.508 45.455 0.00 0.00 0.00 3.53
295 296 3.428045 GGGAACGCTTGAAATCATGGAAG 60.428 47.826 0.00 0.00 0.00 3.46
296 297 2.927553 ACGCTTGAAATCATGGAAGC 57.072 45.000 0.00 0.00 37.95 3.86
297 298 2.440409 ACGCTTGAAATCATGGAAGCT 58.560 42.857 0.00 0.00 38.94 3.74
298 299 2.821969 ACGCTTGAAATCATGGAAGCTT 59.178 40.909 0.00 0.00 38.94 3.74
299 300 4.009675 ACGCTTGAAATCATGGAAGCTTA 58.990 39.130 0.00 0.00 38.94 3.09
300 301 4.641989 ACGCTTGAAATCATGGAAGCTTAT 59.358 37.500 0.00 0.00 38.94 1.73
301 302 5.822519 ACGCTTGAAATCATGGAAGCTTATA 59.177 36.000 0.00 0.00 38.94 0.98
302 303 6.017605 ACGCTTGAAATCATGGAAGCTTATAG 60.018 38.462 0.00 0.00 38.94 1.31
303 304 6.017605 CGCTTGAAATCATGGAAGCTTATAGT 60.018 38.462 0.00 0.00 38.94 2.12
304 305 7.171508 CGCTTGAAATCATGGAAGCTTATAGTA 59.828 37.037 0.00 0.00 38.94 1.82
305 306 9.007901 GCTTGAAATCATGGAAGCTTATAGTAT 57.992 33.333 0.00 0.00 38.23 2.12
308 309 9.935241 TGAAATCATGGAAGCTTATAGTATCTC 57.065 33.333 0.00 0.00 0.00 2.75
337 338 4.978083 AGATTAAGCTGAAACTGCATGG 57.022 40.909 0.00 0.00 0.00 3.66
338 339 4.592942 AGATTAAGCTGAAACTGCATGGA 58.407 39.130 0.00 0.00 0.00 3.41
339 340 5.012239 AGATTAAGCTGAAACTGCATGGAA 58.988 37.500 0.00 0.00 0.00 3.53
340 341 5.477984 AGATTAAGCTGAAACTGCATGGAAA 59.522 36.000 0.00 0.00 0.00 3.13
341 342 5.528043 TTAAGCTGAAACTGCATGGAAAA 57.472 34.783 0.00 0.00 0.00 2.29
342 343 4.405116 AAGCTGAAACTGCATGGAAAAA 57.595 36.364 0.00 0.00 0.00 1.94
367 368 8.425577 AATGTTACTACTATGTTCATCAGTGC 57.574 34.615 0.00 0.00 0.00 4.40
368 369 6.930731 TGTTACTACTATGTTCATCAGTGCA 58.069 36.000 0.00 0.00 0.00 4.57
369 370 7.555965 TGTTACTACTATGTTCATCAGTGCAT 58.444 34.615 0.00 0.00 0.00 3.96
370 371 8.691797 TGTTACTACTATGTTCATCAGTGCATA 58.308 33.333 0.00 0.00 0.00 3.14
371 372 8.969267 GTTACTACTATGTTCATCAGTGCATAC 58.031 37.037 0.00 0.00 0.00 2.39
372 373 6.516718 ACTACTATGTTCATCAGTGCATACC 58.483 40.000 0.00 0.00 0.00 2.73
373 374 5.357742 ACTATGTTCATCAGTGCATACCA 57.642 39.130 0.00 0.00 0.00 3.25
374 375 5.933617 ACTATGTTCATCAGTGCATACCAT 58.066 37.500 0.00 0.00 0.00 3.55
375 376 6.359804 ACTATGTTCATCAGTGCATACCATT 58.640 36.000 0.00 0.00 0.00 3.16
376 377 7.508687 ACTATGTTCATCAGTGCATACCATTA 58.491 34.615 0.00 0.00 0.00 1.90
377 378 6.624352 ATGTTCATCAGTGCATACCATTAC 57.376 37.500 0.00 0.00 0.00 1.89
378 379 4.881273 TGTTCATCAGTGCATACCATTACC 59.119 41.667 0.00 0.00 0.00 2.85
379 380 4.769345 TCATCAGTGCATACCATTACCA 57.231 40.909 0.00 0.00 0.00 3.25
380 381 5.109500 TCATCAGTGCATACCATTACCAA 57.891 39.130 0.00 0.00 0.00 3.67
381 382 4.881273 TCATCAGTGCATACCATTACCAAC 59.119 41.667 0.00 0.00 0.00 3.77
382 383 3.266636 TCAGTGCATACCATTACCAACG 58.733 45.455 0.00 0.00 0.00 4.10
383 384 3.006940 CAGTGCATACCATTACCAACGT 58.993 45.455 0.00 0.00 0.00 3.99
384 385 3.438781 CAGTGCATACCATTACCAACGTT 59.561 43.478 0.00 0.00 0.00 3.99
385 386 3.687698 AGTGCATACCATTACCAACGTTC 59.312 43.478 0.00 0.00 0.00 3.95
386 387 2.673862 TGCATACCATTACCAACGTTCG 59.326 45.455 0.00 0.00 0.00 3.95
387 388 2.538132 GCATACCATTACCAACGTTCGC 60.538 50.000 0.00 0.00 0.00 4.70
431 432 5.910637 TTTTGAAATGCTGAAACTGCATC 57.089 34.783 14.31 6.84 45.60 3.91
432 433 4.859304 TTGAAATGCTGAAACTGCATCT 57.141 36.364 14.31 3.40 45.60 2.90
433 434 4.168922 TGAAATGCTGAAACTGCATCTG 57.831 40.909 14.31 0.00 45.60 2.90
434 435 3.057104 TGAAATGCTGAAACTGCATCTGG 60.057 43.478 14.31 0.00 45.60 3.86
435 436 2.502142 ATGCTGAAACTGCATCTGGA 57.498 45.000 9.59 0.00 43.59 3.86
436 437 2.275134 TGCTGAAACTGCATCTGGAA 57.725 45.000 0.00 0.00 33.63 3.53
437 438 1.881973 TGCTGAAACTGCATCTGGAAC 59.118 47.619 0.00 0.00 33.63 3.62
438 439 1.200948 GCTGAAACTGCATCTGGAACC 59.799 52.381 0.00 0.00 0.00 3.62
439 440 2.507484 CTGAAACTGCATCTGGAACCA 58.493 47.619 0.00 0.00 0.00 3.67
440 441 2.886523 CTGAAACTGCATCTGGAACCAA 59.113 45.455 0.00 0.00 0.00 3.67
441 442 3.295093 TGAAACTGCATCTGGAACCAAA 58.705 40.909 0.00 0.00 0.00 3.28
442 443 3.318839 TGAAACTGCATCTGGAACCAAAG 59.681 43.478 0.00 0.00 0.00 2.77
443 444 2.664402 ACTGCATCTGGAACCAAAGT 57.336 45.000 0.00 0.00 0.00 2.66
444 445 2.949447 ACTGCATCTGGAACCAAAGTT 58.051 42.857 0.00 0.00 39.54 2.66
468 469 4.764679 CGATAGCAAGCTAGATGACTCT 57.235 45.455 7.91 0.00 35.39 3.24
469 470 4.722194 CGATAGCAAGCTAGATGACTCTC 58.278 47.826 7.91 0.00 32.66 3.20
470 471 4.668941 CGATAGCAAGCTAGATGACTCTCG 60.669 50.000 7.91 5.66 32.66 4.04
471 472 1.680735 AGCAAGCTAGATGACTCTCGG 59.319 52.381 0.00 0.00 32.66 4.63
472 473 1.269517 GCAAGCTAGATGACTCTCGGG 60.270 57.143 0.00 0.00 32.66 5.14
473 474 2.302260 CAAGCTAGATGACTCTCGGGA 58.698 52.381 0.00 0.00 32.66 5.14
474 475 2.890311 CAAGCTAGATGACTCTCGGGAT 59.110 50.000 0.00 0.00 32.66 3.85
475 476 2.513753 AGCTAGATGACTCTCGGGATG 58.486 52.381 0.00 0.00 32.66 3.51
476 477 1.543802 GCTAGATGACTCTCGGGATGG 59.456 57.143 0.00 0.00 32.66 3.51
477 478 2.815963 GCTAGATGACTCTCGGGATGGA 60.816 54.545 0.00 0.00 32.66 3.41
478 479 2.461300 AGATGACTCTCGGGATGGAA 57.539 50.000 0.00 0.00 0.00 3.53
479 480 2.315176 AGATGACTCTCGGGATGGAAG 58.685 52.381 0.00 0.00 0.00 3.46
480 481 2.091610 AGATGACTCTCGGGATGGAAGA 60.092 50.000 0.00 0.00 0.00 2.87
481 482 2.461300 TGACTCTCGGGATGGAAGAT 57.539 50.000 0.00 0.00 0.00 2.40
482 483 2.752030 TGACTCTCGGGATGGAAGATT 58.248 47.619 0.00 0.00 0.00 2.40
483 484 2.432146 TGACTCTCGGGATGGAAGATTG 59.568 50.000 0.00 0.00 0.00 2.67
484 485 2.695666 GACTCTCGGGATGGAAGATTGA 59.304 50.000 0.00 0.00 0.00 2.57
485 486 3.107601 ACTCTCGGGATGGAAGATTGAA 58.892 45.455 0.00 0.00 0.00 2.69
486 487 3.133721 ACTCTCGGGATGGAAGATTGAAG 59.866 47.826 0.00 0.00 0.00 3.02
487 488 3.374764 TCTCGGGATGGAAGATTGAAGA 58.625 45.455 0.00 0.00 0.00 2.87
488 489 3.774766 TCTCGGGATGGAAGATTGAAGAA 59.225 43.478 0.00 0.00 0.00 2.52
489 490 4.225042 TCTCGGGATGGAAGATTGAAGAAA 59.775 41.667 0.00 0.00 0.00 2.52
497 498 4.036734 TGGAAGATTGAAGAAACACACAGC 59.963 41.667 0.00 0.00 0.00 4.40
512 513 3.088194 CACAGCAGTGCATCTTTTTGT 57.912 42.857 19.20 8.02 39.21 2.83
544 550 1.066303 CGAGAAATGGAGGACGAGGAG 59.934 57.143 0.00 0.00 0.00 3.69
551 557 2.363147 AGGACGAGGAGGTCAGCC 60.363 66.667 0.00 0.00 38.70 4.85
552 558 3.462678 GGACGAGGAGGTCAGCCC 61.463 72.222 0.00 0.00 38.70 5.19
554 560 4.316823 ACGAGGAGGTCAGCCCCA 62.317 66.667 0.00 0.00 34.57 4.96
555 561 3.003173 CGAGGAGGTCAGCCCCAA 61.003 66.667 0.00 0.00 34.57 4.12
556 562 2.671682 GAGGAGGTCAGCCCCAAC 59.328 66.667 0.00 0.00 34.57 3.77
557 563 3.316573 GAGGAGGTCAGCCCCAACG 62.317 68.421 0.00 0.00 34.57 4.10
559 565 2.747686 GAGGTCAGCCCCAACGAA 59.252 61.111 0.00 0.00 34.57 3.85
560 566 1.072505 GAGGTCAGCCCCAACGAAA 59.927 57.895 0.00 0.00 34.57 3.46
562 568 2.613506 GGTCAGCCCCAACGAAACG 61.614 63.158 0.00 0.00 0.00 3.60
563 569 1.595929 GTCAGCCCCAACGAAACGA 60.596 57.895 0.00 0.00 0.00 3.85
564 570 1.301401 TCAGCCCCAACGAAACGAG 60.301 57.895 0.00 0.00 0.00 4.18
565 571 1.301401 CAGCCCCAACGAAACGAGA 60.301 57.895 0.00 0.00 0.00 4.04
566 572 0.882927 CAGCCCCAACGAAACGAGAA 60.883 55.000 0.00 0.00 0.00 2.87
568 574 1.574702 GCCCCAACGAAACGAGAAGG 61.575 60.000 0.00 0.00 0.00 3.46
663 709 4.947147 GAAGCCACCACCGCACCA 62.947 66.667 0.00 0.00 0.00 4.17
920 1133 1.472276 CTGCCGACGTTTAGCTAGCG 61.472 60.000 9.55 15.26 0.00 4.26
2078 2337 2.829914 GCTGCCGCCATCATGGAA 60.830 61.111 8.30 0.00 40.96 3.53
2168 2427 2.294512 GCCAAAGCAAGATAGGTATGCC 59.705 50.000 0.00 0.00 40.93 4.40
2495 2754 1.675310 CAAGGGTGCCGAGATTGCA 60.675 57.895 0.00 0.00 36.12 4.08
2555 2814 1.478471 CCTGTGACCAACCATGTCCAA 60.478 52.381 0.00 0.00 31.60 3.53
2663 2922 0.748450 TGTCCTCGACGTTCTTGGTT 59.252 50.000 0.00 0.00 34.95 3.67
2718 2977 5.682234 TGAGGAGAATGTCAAGAATGCTA 57.318 39.130 0.00 0.00 0.00 3.49
2726 2985 7.563020 AGAATGTCAAGAATGCTATCAAGAGA 58.437 34.615 0.00 0.00 0.00 3.10
2741 3000 6.596309 ATCAAGAGATGTGTGAAGACTGTA 57.404 37.500 0.00 0.00 31.91 2.74
3017 3276 0.106268 TGCTGCCAAAGGAGGTTGAA 60.106 50.000 0.00 0.00 0.00 2.69
3249 3508 2.526873 AGTGGAACGGTGAGCCCT 60.527 61.111 0.00 0.00 45.86 5.19
3443 3727 2.565834 TGTTGGGTAGCCAGTAGAACTC 59.434 50.000 14.38 0.25 0.00 3.01
3455 3739 6.041069 AGCCAGTAGAACTCTTATGATGTACC 59.959 42.308 0.00 0.00 0.00 3.34
3481 3767 5.886992 AGTTAAAAAGGCAGTGTGTGTTAC 58.113 37.500 0.00 0.00 0.00 2.50
3510 3796 6.533730 TCATGATAAATGTACTGGGTCCATC 58.466 40.000 0.00 0.00 0.00 3.51
3515 3801 7.893302 TGATAAATGTACTGGGTCCATCTTTTT 59.107 33.333 0.00 0.00 0.00 1.94
3532 3818 6.433847 TCTTTTTAGATCAACTGGTCCTCA 57.566 37.500 0.00 0.00 0.00 3.86
3584 3870 4.603989 TTTCTTATGGTGTGTGTACGGA 57.396 40.909 0.00 0.00 0.00 4.69
3650 3936 9.231297 TGGTAATAAGTTCTCTGAATTCTTTGG 57.769 33.333 7.05 0.00 0.00 3.28
3656 3946 2.903784 TCTCTGAATTCTTTGGACGGGA 59.096 45.455 7.05 0.00 0.00 5.14
3677 3968 3.495670 ACGAGGACTTCTCTGAATTCG 57.504 47.619 0.04 0.00 40.30 3.34
3680 3971 3.736433 CGAGGACTTCTCTGAATTCGCAT 60.736 47.826 0.04 0.00 40.30 4.73
3698 3989 4.876107 TCGCATTCTCCCATCTAGTTTTTC 59.124 41.667 0.00 0.00 0.00 2.29
3777 4090 1.027357 CTACCGTACCACCGCATACT 58.973 55.000 0.00 0.00 0.00 2.12
3778 4091 0.740149 TACCGTACCACCGCATACTG 59.260 55.000 0.00 0.00 0.00 2.74
3779 4092 1.252904 ACCGTACCACCGCATACTGT 61.253 55.000 0.00 0.00 0.00 3.55
3780 4093 0.804544 CCGTACCACCGCATACTGTG 60.805 60.000 0.00 0.00 0.00 3.66
3781 4094 0.171679 CGTACCACCGCATACTGTGA 59.828 55.000 0.00 0.00 33.19 3.58
3783 4096 2.737359 CGTACCACCGCATACTGTGAAT 60.737 50.000 0.00 0.00 33.19 2.57
3784 4097 2.024176 ACCACCGCATACTGTGAATC 57.976 50.000 0.00 0.00 33.19 2.52
3786 4099 1.406751 CCACCGCATACTGTGAATCCA 60.407 52.381 0.00 0.00 33.19 3.41
3787 4100 2.355197 CACCGCATACTGTGAATCCAA 58.645 47.619 0.00 0.00 33.19 3.53
3788 4101 2.945008 CACCGCATACTGTGAATCCAAT 59.055 45.455 0.00 0.00 33.19 3.16
3789 4102 3.378112 CACCGCATACTGTGAATCCAATT 59.622 43.478 0.00 0.00 33.19 2.32
3922 4331 5.013704 ACGTGGGCAGGAAATATATATGGAA 59.986 40.000 0.00 0.00 0.00 3.53
4001 5846 6.403333 TCTTTAATCTACACGCATCAACAC 57.597 37.500 0.00 0.00 0.00 3.32
4023 5873 0.026674 CTGCGCGTACATTGACCATG 59.973 55.000 8.43 0.00 39.07 3.66
4035 5908 3.719268 TTGACCATGCAGGAGTATGTT 57.281 42.857 0.00 0.00 41.22 2.71
4048 5925 0.462047 GTATGTTCCTCTGCACCGGG 60.462 60.000 6.32 0.00 0.00 5.73
4168 6100 6.226787 CAGTCAAGTAGTCATCTTCAAACCT 58.773 40.000 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.647636 TGGAACAGGATCTCCTAAGAGG 58.352 50.000 0.00 0.00 46.65 3.69
1 2 4.502950 GCATGGAACAGGATCTCCTAAGAG 60.503 50.000 0.00 0.00 46.40 2.85
2 3 3.389329 GCATGGAACAGGATCTCCTAAGA 59.611 47.826 0.00 0.00 46.40 2.10
3 4 3.390639 AGCATGGAACAGGATCTCCTAAG 59.609 47.826 0.00 0.00 46.40 2.18
4 5 3.135348 CAGCATGGAACAGGATCTCCTAA 59.865 47.826 0.00 0.00 46.40 2.69
5 6 2.702478 CAGCATGGAACAGGATCTCCTA 59.298 50.000 0.00 0.00 46.40 2.94
6 7 1.489649 CAGCATGGAACAGGATCTCCT 59.510 52.381 0.00 0.00 46.40 3.69
7 8 1.487976 TCAGCATGGAACAGGATCTCC 59.512 52.381 0.00 0.00 46.40 3.71
8 9 2.996249 TCAGCATGGAACAGGATCTC 57.004 50.000 0.00 0.00 46.40 2.75
9 10 3.726557 TTTCAGCATGGAACAGGATCT 57.273 42.857 0.00 0.00 46.40 2.75
17 18 0.109532 TCCACGGTTTCAGCATGGAA 59.890 50.000 0.00 0.00 36.51 3.53
18 19 0.109532 TTCCACGGTTTCAGCATGGA 59.890 50.000 0.00 0.00 37.68 3.41
19 20 1.176527 ATTCCACGGTTTCAGCATGG 58.823 50.000 0.00 0.00 36.16 3.66
20 21 2.489329 AGAATTCCACGGTTTCAGCATG 59.511 45.455 0.65 0.00 37.54 4.06
21 22 2.795329 AGAATTCCACGGTTTCAGCAT 58.205 42.857 0.65 0.00 0.00 3.79
22 23 2.270352 AGAATTCCACGGTTTCAGCA 57.730 45.000 0.65 0.00 0.00 4.41
23 24 2.922335 GCAAGAATTCCACGGTTTCAGC 60.922 50.000 0.65 4.75 0.00 4.26
24 25 2.554032 AGCAAGAATTCCACGGTTTCAG 59.446 45.455 0.65 0.13 0.00 3.02
25 26 2.582052 AGCAAGAATTCCACGGTTTCA 58.418 42.857 0.65 0.00 0.00 2.69
26 27 4.965119 ATAGCAAGAATTCCACGGTTTC 57.035 40.909 0.65 0.00 0.00 2.78
27 28 5.708230 TGTTATAGCAAGAATTCCACGGTTT 59.292 36.000 0.65 0.00 0.00 3.27
28 29 5.123344 GTGTTATAGCAAGAATTCCACGGTT 59.877 40.000 0.65 0.00 0.00 4.44
29 30 4.634443 GTGTTATAGCAAGAATTCCACGGT 59.366 41.667 0.65 0.00 0.00 4.83
30 31 4.876107 AGTGTTATAGCAAGAATTCCACGG 59.124 41.667 0.65 0.00 0.00 4.94
31 32 5.580691 TGAGTGTTATAGCAAGAATTCCACG 59.419 40.000 0.65 0.00 0.00 4.94
32 33 6.985188 TGAGTGTTATAGCAAGAATTCCAC 57.015 37.500 0.65 0.00 0.00 4.02
33 34 7.994425 TTTGAGTGTTATAGCAAGAATTCCA 57.006 32.000 0.65 0.00 0.00 3.53
34 35 9.294030 CAATTTGAGTGTTATAGCAAGAATTCC 57.706 33.333 0.65 0.00 0.00 3.01
38 39 9.844790 CAATCAATTTGAGTGTTATAGCAAGAA 57.155 29.630 16.58 0.00 37.65 2.52
39 40 8.461222 CCAATCAATTTGAGTGTTATAGCAAGA 58.539 33.333 21.40 0.00 40.49 3.02
40 41 7.221452 GCCAATCAATTTGAGTGTTATAGCAAG 59.779 37.037 21.40 7.54 40.49 4.01
41 42 7.035004 GCCAATCAATTTGAGTGTTATAGCAA 58.965 34.615 21.40 0.00 40.49 3.91
42 43 6.405731 GGCCAATCAATTTGAGTGTTATAGCA 60.406 38.462 21.40 0.00 40.49 3.49
43 44 5.979517 GGCCAATCAATTTGAGTGTTATAGC 59.020 40.000 21.40 17.03 40.49 2.97
44 45 6.974622 GTGGCCAATCAATTTGAGTGTTATAG 59.025 38.462 21.40 9.86 40.49 1.31
45 46 6.404184 CGTGGCCAATCAATTTGAGTGTTATA 60.404 38.462 21.40 6.27 40.49 0.98
46 47 5.622007 CGTGGCCAATCAATTTGAGTGTTAT 60.622 40.000 21.40 0.00 40.49 1.89
47 48 4.320861 CGTGGCCAATCAATTTGAGTGTTA 60.321 41.667 21.40 8.01 40.49 2.41
48 49 3.552684 CGTGGCCAATCAATTTGAGTGTT 60.553 43.478 21.40 2.57 40.49 3.32
49 50 2.030007 CGTGGCCAATCAATTTGAGTGT 60.030 45.455 21.40 1.05 40.49 3.55
50 51 2.228582 TCGTGGCCAATCAATTTGAGTG 59.771 45.455 17.60 17.60 41.62 3.51
51 52 2.513753 TCGTGGCCAATCAATTTGAGT 58.486 42.857 7.24 0.00 37.53 3.41
52 53 3.057315 ACTTCGTGGCCAATCAATTTGAG 60.057 43.478 7.24 0.00 37.53 3.02
53 54 2.890311 ACTTCGTGGCCAATCAATTTGA 59.110 40.909 7.24 0.75 37.53 2.69
54 55 3.302365 ACTTCGTGGCCAATCAATTTG 57.698 42.857 7.24 0.00 34.93 2.32
55 56 4.335400 AAACTTCGTGGCCAATCAATTT 57.665 36.364 7.24 3.06 0.00 1.82
56 57 4.202202 TGAAAACTTCGTGGCCAATCAATT 60.202 37.500 7.24 0.00 0.00 2.32
57 58 3.320541 TGAAAACTTCGTGGCCAATCAAT 59.679 39.130 7.24 0.00 0.00 2.57
58 59 2.690497 TGAAAACTTCGTGGCCAATCAA 59.310 40.909 7.24 0.00 0.00 2.57
59 60 2.034053 GTGAAAACTTCGTGGCCAATCA 59.966 45.455 7.24 0.00 0.00 2.57
60 61 2.293399 AGTGAAAACTTCGTGGCCAATC 59.707 45.455 7.24 0.00 0.00 2.67
61 62 2.293399 GAGTGAAAACTTCGTGGCCAAT 59.707 45.455 7.24 0.00 0.00 3.16
62 63 1.673920 GAGTGAAAACTTCGTGGCCAA 59.326 47.619 7.24 0.00 0.00 4.52
63 64 1.305201 GAGTGAAAACTTCGTGGCCA 58.695 50.000 0.00 0.00 0.00 5.36
64 65 0.234884 CGAGTGAAAACTTCGTGGCC 59.765 55.000 0.00 0.00 0.00 5.36
65 66 0.935196 ACGAGTGAAAACTTCGTGGC 59.065 50.000 0.00 0.00 35.63 5.01
66 67 1.525619 GGACGAGTGAAAACTTCGTGG 59.474 52.381 3.30 0.00 37.15 4.94
67 68 1.525619 GGGACGAGTGAAAACTTCGTG 59.474 52.381 3.30 0.00 37.15 4.35
68 69 1.137479 TGGGACGAGTGAAAACTTCGT 59.863 47.619 0.00 0.00 39.86 3.85
69 70 1.860676 TGGGACGAGTGAAAACTTCG 58.139 50.000 0.00 0.00 0.00 3.79
70 71 2.484264 CCATGGGACGAGTGAAAACTTC 59.516 50.000 2.85 0.00 0.00 3.01
71 72 2.504367 CCATGGGACGAGTGAAAACTT 58.496 47.619 2.85 0.00 0.00 2.66
72 73 1.882352 GCCATGGGACGAGTGAAAACT 60.882 52.381 15.13 0.00 0.00 2.66
73 74 0.521735 GCCATGGGACGAGTGAAAAC 59.478 55.000 15.13 0.00 0.00 2.43
74 75 0.400213 AGCCATGGGACGAGTGAAAA 59.600 50.000 15.13 0.00 0.00 2.29
75 76 1.207089 CTAGCCATGGGACGAGTGAAA 59.793 52.381 15.13 0.00 0.00 2.69
76 77 0.824109 CTAGCCATGGGACGAGTGAA 59.176 55.000 15.13 0.00 0.00 3.18
77 78 1.676678 GCTAGCCATGGGACGAGTGA 61.677 60.000 15.13 0.00 0.00 3.41
78 79 1.227380 GCTAGCCATGGGACGAGTG 60.227 63.158 15.13 0.00 0.00 3.51
79 80 0.978146 AAGCTAGCCATGGGACGAGT 60.978 55.000 15.13 0.00 0.00 4.18
80 81 0.531532 CAAGCTAGCCATGGGACGAG 60.532 60.000 15.13 4.49 0.00 4.18
81 82 0.975556 TCAAGCTAGCCATGGGACGA 60.976 55.000 15.13 0.00 0.00 4.20
82 83 0.107703 TTCAAGCTAGCCATGGGACG 60.108 55.000 15.13 0.00 0.00 4.79
83 84 2.128771 TTTCAAGCTAGCCATGGGAC 57.871 50.000 15.13 0.00 0.00 4.46
84 85 2.897271 TTTTCAAGCTAGCCATGGGA 57.103 45.000 15.13 0.00 0.00 4.37
145 146 9.692325 ACTTATTAGAATCCTTGAGCATCTTTT 57.308 29.630 0.00 0.00 34.92 2.27
146 147 9.118300 CACTTATTAGAATCCTTGAGCATCTTT 57.882 33.333 0.00 0.00 34.92 2.52
147 148 7.228308 GCACTTATTAGAATCCTTGAGCATCTT 59.772 37.037 0.00 0.00 34.92 2.40
148 149 6.709846 GCACTTATTAGAATCCTTGAGCATCT 59.290 38.462 0.00 0.00 34.92 2.90
149 150 6.709846 AGCACTTATTAGAATCCTTGAGCATC 59.290 38.462 0.00 0.00 0.00 3.91
150 151 6.599445 AGCACTTATTAGAATCCTTGAGCAT 58.401 36.000 0.00 0.00 0.00 3.79
151 152 5.994250 AGCACTTATTAGAATCCTTGAGCA 58.006 37.500 0.00 0.00 0.00 4.26
152 153 8.502387 CATTAGCACTTATTAGAATCCTTGAGC 58.498 37.037 0.00 0.00 0.00 4.26
153 154 9.770097 TCATTAGCACTTATTAGAATCCTTGAG 57.230 33.333 0.00 0.00 0.00 3.02
216 217 9.836076 GGTCGTTAGCTGTTTAATTTTATTTCT 57.164 29.630 0.00 0.00 0.00 2.52
217 218 9.836076 AGGTCGTTAGCTGTTTAATTTTATTTC 57.164 29.630 0.00 0.00 30.51 2.17
221 222 9.270640 TGTAAGGTCGTTAGCTGTTTAATTTTA 57.729 29.630 0.00 0.00 32.57 1.52
222 223 8.156994 TGTAAGGTCGTTAGCTGTTTAATTTT 57.843 30.769 0.00 0.00 32.57 1.82
223 224 7.658575 TCTGTAAGGTCGTTAGCTGTTTAATTT 59.341 33.333 0.00 0.00 32.57 1.82
224 225 7.117379 GTCTGTAAGGTCGTTAGCTGTTTAATT 59.883 37.037 0.00 0.00 32.57 1.40
225 226 6.589139 GTCTGTAAGGTCGTTAGCTGTTTAAT 59.411 38.462 0.00 0.00 32.57 1.40
226 227 5.922544 GTCTGTAAGGTCGTTAGCTGTTTAA 59.077 40.000 0.00 0.00 32.57 1.52
227 228 5.464168 GTCTGTAAGGTCGTTAGCTGTTTA 58.536 41.667 0.00 0.00 32.57 2.01
228 229 4.304939 GTCTGTAAGGTCGTTAGCTGTTT 58.695 43.478 0.00 0.00 32.57 2.83
229 230 3.611057 CGTCTGTAAGGTCGTTAGCTGTT 60.611 47.826 0.00 0.00 32.57 3.16
230 231 2.095364 CGTCTGTAAGGTCGTTAGCTGT 60.095 50.000 0.00 0.00 32.57 4.40
231 232 2.516923 CGTCTGTAAGGTCGTTAGCTG 58.483 52.381 0.00 0.00 32.57 4.24
232 233 1.471684 CCGTCTGTAAGGTCGTTAGCT 59.528 52.381 0.00 0.00 34.01 3.32
233 234 1.905449 CCGTCTGTAAGGTCGTTAGC 58.095 55.000 0.00 0.00 32.03 3.09
234 235 1.468736 GGCCGTCTGTAAGGTCGTTAG 60.469 57.143 0.00 0.00 32.03 2.34
235 236 0.527565 GGCCGTCTGTAAGGTCGTTA 59.472 55.000 0.00 0.00 32.03 3.18
236 237 1.291272 GGCCGTCTGTAAGGTCGTT 59.709 57.895 0.00 0.00 32.03 3.85
237 238 2.643232 GGGCCGTCTGTAAGGTCGT 61.643 63.158 0.00 0.00 31.73 4.34
238 239 2.183555 GGGCCGTCTGTAAGGTCG 59.816 66.667 0.00 0.00 31.73 4.79
239 240 2.288025 TGGGGCCGTCTGTAAGGTC 61.288 63.158 0.00 0.00 0.00 3.85
240 241 2.203877 TGGGGCCGTCTGTAAGGT 60.204 61.111 0.00 0.00 0.00 3.50
241 242 2.119484 TTGTGGGGCCGTCTGTAAGG 62.119 60.000 0.00 0.00 0.00 2.69
242 243 0.250553 TTTGTGGGGCCGTCTGTAAG 60.251 55.000 0.00 0.00 0.00 2.34
243 244 0.535553 GTTTGTGGGGCCGTCTGTAA 60.536 55.000 0.00 0.00 0.00 2.41
244 245 1.071814 GTTTGTGGGGCCGTCTGTA 59.928 57.895 0.00 0.00 0.00 2.74
245 246 2.203294 GTTTGTGGGGCCGTCTGT 60.203 61.111 0.00 0.00 0.00 3.41
246 247 2.983592 GGTTTGTGGGGCCGTCTG 60.984 66.667 0.00 0.00 0.00 3.51
247 248 3.175710 AGGTTTGTGGGGCCGTCT 61.176 61.111 0.00 0.00 0.00 4.18
248 249 2.671963 GAGGTTTGTGGGGCCGTC 60.672 66.667 0.00 0.00 0.00 4.79
249 250 2.976494 CTTGAGGTTTGTGGGGCCGT 62.976 60.000 0.00 0.00 0.00 5.68
250 251 2.203422 TTGAGGTTTGTGGGGCCG 60.203 61.111 0.00 0.00 0.00 6.13
251 252 1.908299 CCTTGAGGTTTGTGGGGCC 60.908 63.158 0.00 0.00 0.00 5.80
252 253 2.574018 GCCTTGAGGTTTGTGGGGC 61.574 63.158 0.00 0.00 37.57 5.80
253 254 1.152567 TGCCTTGAGGTTTGTGGGG 60.153 57.895 0.00 0.00 37.57 4.96
254 255 1.795170 CGTGCCTTGAGGTTTGTGGG 61.795 60.000 0.00 0.00 37.57 4.61
255 256 1.654220 CGTGCCTTGAGGTTTGTGG 59.346 57.895 0.00 0.00 37.57 4.17
256 257 1.654220 CCGTGCCTTGAGGTTTGTG 59.346 57.895 0.00 0.00 37.57 3.33
257 258 1.528309 CCCGTGCCTTGAGGTTTGT 60.528 57.895 0.00 0.00 37.57 2.83
258 259 0.821711 TTCCCGTGCCTTGAGGTTTG 60.822 55.000 0.00 0.00 37.57 2.93
259 260 0.822121 GTTCCCGTGCCTTGAGGTTT 60.822 55.000 0.00 0.00 37.57 3.27
260 261 1.228154 GTTCCCGTGCCTTGAGGTT 60.228 57.895 0.00 0.00 37.57 3.50
261 262 2.430367 GTTCCCGTGCCTTGAGGT 59.570 61.111 0.00 0.00 37.57 3.85
262 263 2.742372 CGTTCCCGTGCCTTGAGG 60.742 66.667 0.00 0.00 38.53 3.86
263 264 3.423154 GCGTTCCCGTGCCTTGAG 61.423 66.667 0.00 0.00 36.15 3.02
264 265 3.469863 AAGCGTTCCCGTGCCTTGA 62.470 57.895 0.00 0.00 36.15 3.02
265 266 2.978010 AAGCGTTCCCGTGCCTTG 60.978 61.111 0.00 0.00 36.15 3.61
266 267 2.951475 TTCAAGCGTTCCCGTGCCTT 62.951 55.000 0.00 0.00 36.15 4.35
267 268 2.951475 TTTCAAGCGTTCCCGTGCCT 62.951 55.000 0.00 0.00 36.15 4.75
268 269 1.862602 ATTTCAAGCGTTCCCGTGCC 61.863 55.000 0.00 0.00 36.15 5.01
269 270 0.454452 GATTTCAAGCGTTCCCGTGC 60.454 55.000 0.00 0.00 36.15 5.34
270 271 0.871722 TGATTTCAAGCGTTCCCGTG 59.128 50.000 0.00 0.00 36.15 4.94
271 272 1.468520 CATGATTTCAAGCGTTCCCGT 59.531 47.619 0.00 0.00 36.15 5.28
272 273 1.202177 CCATGATTTCAAGCGTTCCCG 60.202 52.381 0.00 0.00 37.07 5.14
273 274 2.091541 TCCATGATTTCAAGCGTTCCC 58.908 47.619 0.00 0.00 0.00 3.97
274 275 3.762779 CTTCCATGATTTCAAGCGTTCC 58.237 45.455 0.00 0.00 0.00 3.62
275 276 3.119708 AGCTTCCATGATTTCAAGCGTTC 60.120 43.478 0.00 0.00 44.95 3.95
276 277 2.821969 AGCTTCCATGATTTCAAGCGTT 59.178 40.909 0.00 0.00 44.95 4.84
277 278 2.440409 AGCTTCCATGATTTCAAGCGT 58.560 42.857 0.00 0.00 44.95 5.07
278 279 3.498927 AAGCTTCCATGATTTCAAGCG 57.501 42.857 0.00 0.00 44.95 4.68
279 280 7.269477 ACTATAAGCTTCCATGATTTCAAGC 57.731 36.000 0.00 0.00 41.38 4.01
282 283 9.935241 GAGATACTATAAGCTTCCATGATTTCA 57.065 33.333 0.00 0.00 0.00 2.69
311 312 9.440773 CCATGCAGTTTCAGCTTAATCTATATA 57.559 33.333 0.00 0.00 0.00 0.86
312 313 8.159447 TCCATGCAGTTTCAGCTTAATCTATAT 58.841 33.333 0.00 0.00 0.00 0.86
313 314 7.508687 TCCATGCAGTTTCAGCTTAATCTATA 58.491 34.615 0.00 0.00 0.00 1.31
314 315 6.359804 TCCATGCAGTTTCAGCTTAATCTAT 58.640 36.000 0.00 0.00 0.00 1.98
315 316 5.744171 TCCATGCAGTTTCAGCTTAATCTA 58.256 37.500 0.00 0.00 0.00 1.98
316 317 4.592942 TCCATGCAGTTTCAGCTTAATCT 58.407 39.130 0.00 0.00 0.00 2.40
317 318 4.970662 TCCATGCAGTTTCAGCTTAATC 57.029 40.909 0.00 0.00 0.00 1.75
318 319 5.726980 TTTCCATGCAGTTTCAGCTTAAT 57.273 34.783 0.00 0.00 0.00 1.40
319 320 5.528043 TTTTCCATGCAGTTTCAGCTTAA 57.472 34.783 0.00 0.00 0.00 1.85
320 321 5.528043 TTTTTCCATGCAGTTTCAGCTTA 57.472 34.783 0.00 0.00 0.00 3.09
321 322 4.405116 TTTTTCCATGCAGTTTCAGCTT 57.595 36.364 0.00 0.00 0.00 3.74
341 342 8.883731 GCACTGATGAACATAGTAGTAACATTT 58.116 33.333 0.00 0.00 0.00 2.32
342 343 8.040727 TGCACTGATGAACATAGTAGTAACATT 58.959 33.333 0.00 0.00 0.00 2.71
343 344 7.555965 TGCACTGATGAACATAGTAGTAACAT 58.444 34.615 0.00 0.00 0.00 2.71
344 345 6.930731 TGCACTGATGAACATAGTAGTAACA 58.069 36.000 0.00 0.00 0.00 2.41
345 346 8.969267 GTATGCACTGATGAACATAGTAGTAAC 58.031 37.037 0.00 0.00 0.00 2.50
346 347 8.141909 GGTATGCACTGATGAACATAGTAGTAA 58.858 37.037 0.00 0.00 0.00 2.24
347 348 7.286775 TGGTATGCACTGATGAACATAGTAGTA 59.713 37.037 0.00 0.00 0.00 1.82
348 349 6.098266 TGGTATGCACTGATGAACATAGTAGT 59.902 38.462 0.00 0.00 0.00 2.73
349 350 6.515832 TGGTATGCACTGATGAACATAGTAG 58.484 40.000 0.00 0.00 0.00 2.57
350 351 6.478512 TGGTATGCACTGATGAACATAGTA 57.521 37.500 0.00 0.00 0.00 1.82
351 352 5.357742 TGGTATGCACTGATGAACATAGT 57.642 39.130 0.00 0.00 0.00 2.12
352 353 6.872628 AATGGTATGCACTGATGAACATAG 57.127 37.500 0.00 0.00 0.00 2.23
353 354 6.710295 GGTAATGGTATGCACTGATGAACATA 59.290 38.462 0.00 0.00 0.00 2.29
354 355 5.532406 GGTAATGGTATGCACTGATGAACAT 59.468 40.000 0.00 0.00 0.00 2.71
355 356 4.881273 GGTAATGGTATGCACTGATGAACA 59.119 41.667 0.00 0.00 0.00 3.18
356 357 4.881273 TGGTAATGGTATGCACTGATGAAC 59.119 41.667 0.00 0.00 0.00 3.18
357 358 5.109500 TGGTAATGGTATGCACTGATGAA 57.891 39.130 0.00 0.00 0.00 2.57
358 359 4.769345 TGGTAATGGTATGCACTGATGA 57.231 40.909 0.00 0.00 0.00 2.92
359 360 4.260743 CGTTGGTAATGGTATGCACTGATG 60.261 45.833 0.00 0.00 0.00 3.07
360 361 3.876914 CGTTGGTAATGGTATGCACTGAT 59.123 43.478 0.00 0.00 0.00 2.90
361 362 3.266636 CGTTGGTAATGGTATGCACTGA 58.733 45.455 0.00 0.00 0.00 3.41
362 363 3.006940 ACGTTGGTAATGGTATGCACTG 58.993 45.455 0.00 0.00 0.00 3.66
363 364 3.343941 ACGTTGGTAATGGTATGCACT 57.656 42.857 0.00 0.00 0.00 4.40
364 365 3.484557 CGAACGTTGGTAATGGTATGCAC 60.485 47.826 5.00 0.00 0.00 4.57
365 366 2.673862 CGAACGTTGGTAATGGTATGCA 59.326 45.455 5.00 0.00 0.00 3.96
366 367 2.538132 GCGAACGTTGGTAATGGTATGC 60.538 50.000 5.00 0.00 0.00 3.14
367 368 2.285371 CGCGAACGTTGGTAATGGTATG 60.285 50.000 5.00 0.00 33.53 2.39
368 369 1.928503 CGCGAACGTTGGTAATGGTAT 59.071 47.619 5.00 0.00 33.53 2.73
369 370 1.348276 CGCGAACGTTGGTAATGGTA 58.652 50.000 5.00 0.00 33.53 3.25
370 371 2.155665 CGCGAACGTTGGTAATGGT 58.844 52.632 5.00 0.00 33.53 3.55
418 419 1.200948 GGTTCCAGATGCAGTTTCAGC 59.799 52.381 0.00 0.00 0.00 4.26
419 420 2.507484 TGGTTCCAGATGCAGTTTCAG 58.493 47.619 0.00 0.00 0.00 3.02
420 421 2.655090 TGGTTCCAGATGCAGTTTCA 57.345 45.000 0.00 0.00 0.00 2.69
421 422 3.319122 ACTTTGGTTCCAGATGCAGTTTC 59.681 43.478 0.00 0.00 0.00 2.78
422 423 3.299503 ACTTTGGTTCCAGATGCAGTTT 58.700 40.909 0.00 0.00 0.00 2.66
423 424 2.949447 ACTTTGGTTCCAGATGCAGTT 58.051 42.857 0.00 0.00 0.00 3.16
424 425 2.664402 ACTTTGGTTCCAGATGCAGT 57.336 45.000 0.00 0.00 0.00 4.40
425 426 2.095567 CGAACTTTGGTTCCAGATGCAG 60.096 50.000 0.00 0.00 46.46 4.41
426 427 1.879380 CGAACTTTGGTTCCAGATGCA 59.121 47.619 0.00 0.00 46.46 3.96
427 428 1.401539 GCGAACTTTGGTTCCAGATGC 60.402 52.381 3.74 0.00 46.46 3.91
428 429 1.135972 CGCGAACTTTGGTTCCAGATG 60.136 52.381 0.00 0.00 46.46 2.90
429 430 1.156736 CGCGAACTTTGGTTCCAGAT 58.843 50.000 0.00 0.00 46.46 2.90
430 431 0.105224 TCGCGAACTTTGGTTCCAGA 59.895 50.000 6.20 1.49 46.46 3.86
431 432 1.156736 ATCGCGAACTTTGGTTCCAG 58.843 50.000 15.24 0.00 46.46 3.86
432 433 2.343101 CTATCGCGAACTTTGGTTCCA 58.657 47.619 15.24 0.00 46.46 3.53
433 434 1.062148 GCTATCGCGAACTTTGGTTCC 59.938 52.381 15.24 0.00 46.46 3.62
434 435 1.730064 TGCTATCGCGAACTTTGGTTC 59.270 47.619 15.24 0.00 45.91 3.62
435 436 1.803334 TGCTATCGCGAACTTTGGTT 58.197 45.000 15.24 0.00 39.65 3.67
436 437 1.732259 CTTGCTATCGCGAACTTTGGT 59.268 47.619 15.24 0.00 39.65 3.67
437 438 1.529826 GCTTGCTATCGCGAACTTTGG 60.530 52.381 15.24 0.00 39.65 3.28
438 439 1.394917 AGCTTGCTATCGCGAACTTTG 59.605 47.619 15.24 0.00 39.65 2.77
439 440 1.726853 AGCTTGCTATCGCGAACTTT 58.273 45.000 15.24 0.00 39.65 2.66
440 441 2.099263 TCTAGCTTGCTATCGCGAACTT 59.901 45.455 15.24 0.00 39.65 2.66
441 442 1.676529 TCTAGCTTGCTATCGCGAACT 59.323 47.619 15.24 0.00 39.65 3.01
442 443 2.121116 TCTAGCTTGCTATCGCGAAC 57.879 50.000 15.24 6.54 39.65 3.95
443 444 2.293399 TCATCTAGCTTGCTATCGCGAA 59.707 45.455 15.24 1.32 39.65 4.70
444 445 1.880027 TCATCTAGCTTGCTATCGCGA 59.120 47.619 13.09 13.09 39.65 5.87
445 446 1.982223 GTCATCTAGCTTGCTATCGCG 59.018 52.381 0.00 0.00 39.65 5.87
446 447 3.057596 AGAGTCATCTAGCTTGCTATCGC 60.058 47.826 2.59 0.00 32.54 4.58
447 448 4.668941 CGAGAGTCATCTAGCTTGCTATCG 60.669 50.000 2.59 1.46 35.30 2.92
448 449 4.379394 CCGAGAGTCATCTAGCTTGCTATC 60.379 50.000 2.59 0.00 35.30 2.08
449 450 3.505680 CCGAGAGTCATCTAGCTTGCTAT 59.494 47.826 2.59 0.00 35.30 2.97
450 451 2.881513 CCGAGAGTCATCTAGCTTGCTA 59.118 50.000 0.00 2.19 35.30 3.49
451 452 1.680735 CCGAGAGTCATCTAGCTTGCT 59.319 52.381 0.00 0.00 35.30 3.91
452 453 1.269517 CCCGAGAGTCATCTAGCTTGC 60.270 57.143 0.00 0.00 35.30 4.01
453 454 2.302260 TCCCGAGAGTCATCTAGCTTG 58.698 52.381 0.00 0.00 35.30 4.01
454 455 2.738587 TCCCGAGAGTCATCTAGCTT 57.261 50.000 0.00 0.00 35.30 3.74
455 456 2.513753 CATCCCGAGAGTCATCTAGCT 58.486 52.381 0.00 0.00 35.30 3.32
456 457 1.543802 CCATCCCGAGAGTCATCTAGC 59.456 57.143 0.00 0.00 35.30 3.42
457 458 3.147553 TCCATCCCGAGAGTCATCTAG 57.852 52.381 0.00 0.00 35.30 2.43
458 459 3.138468 TCTTCCATCCCGAGAGTCATCTA 59.862 47.826 0.00 0.00 35.30 1.98
459 460 2.091610 TCTTCCATCCCGAGAGTCATCT 60.092 50.000 0.00 0.00 38.98 2.90
460 461 2.311463 TCTTCCATCCCGAGAGTCATC 58.689 52.381 0.00 0.00 0.00 2.92
461 462 2.461300 TCTTCCATCCCGAGAGTCAT 57.539 50.000 0.00 0.00 0.00 3.06
462 463 2.432146 CAATCTTCCATCCCGAGAGTCA 59.568 50.000 0.00 0.00 0.00 3.41
463 464 2.695666 TCAATCTTCCATCCCGAGAGTC 59.304 50.000 0.00 0.00 0.00 3.36
464 465 2.752030 TCAATCTTCCATCCCGAGAGT 58.248 47.619 0.00 0.00 0.00 3.24
465 466 3.386078 TCTTCAATCTTCCATCCCGAGAG 59.614 47.826 0.00 0.00 0.00 3.20
466 467 3.374764 TCTTCAATCTTCCATCCCGAGA 58.625 45.455 0.00 0.00 0.00 4.04
467 468 3.827008 TCTTCAATCTTCCATCCCGAG 57.173 47.619 0.00 0.00 0.00 4.63
468 469 4.261801 GTTTCTTCAATCTTCCATCCCGA 58.738 43.478 0.00 0.00 0.00 5.14
469 470 4.009675 TGTTTCTTCAATCTTCCATCCCG 58.990 43.478 0.00 0.00 0.00 5.14
470 471 4.766891 TGTGTTTCTTCAATCTTCCATCCC 59.233 41.667 0.00 0.00 0.00 3.85
471 472 5.241506 TGTGTGTTTCTTCAATCTTCCATCC 59.758 40.000 0.00 0.00 0.00 3.51
472 473 6.317789 TGTGTGTTTCTTCAATCTTCCATC 57.682 37.500 0.00 0.00 0.00 3.51
473 474 5.278660 GCTGTGTGTTTCTTCAATCTTCCAT 60.279 40.000 0.00 0.00 0.00 3.41
474 475 4.036734 GCTGTGTGTTTCTTCAATCTTCCA 59.963 41.667 0.00 0.00 0.00 3.53
475 476 4.036734 TGCTGTGTGTTTCTTCAATCTTCC 59.963 41.667 0.00 0.00 0.00 3.46
476 477 5.173774 TGCTGTGTGTTTCTTCAATCTTC 57.826 39.130 0.00 0.00 0.00 2.87
477 478 4.641989 ACTGCTGTGTGTTTCTTCAATCTT 59.358 37.500 0.00 0.00 0.00 2.40
478 479 4.036027 CACTGCTGTGTGTTTCTTCAATCT 59.964 41.667 15.05 0.00 39.24 2.40
479 480 4.285292 CACTGCTGTGTGTTTCTTCAATC 58.715 43.478 15.05 0.00 39.24 2.67
480 481 3.489738 GCACTGCTGTGTGTTTCTTCAAT 60.490 43.478 22.70 0.00 45.44 2.57
481 482 2.159393 GCACTGCTGTGTGTTTCTTCAA 60.159 45.455 22.70 0.00 45.44 2.69
482 483 1.401552 GCACTGCTGTGTGTTTCTTCA 59.598 47.619 22.70 0.00 45.44 3.02
483 484 1.401552 TGCACTGCTGTGTGTTTCTTC 59.598 47.619 22.70 6.25 45.44 2.87
484 485 1.462616 TGCACTGCTGTGTGTTTCTT 58.537 45.000 22.70 0.00 45.44 2.52
485 486 1.605710 GATGCACTGCTGTGTGTTTCT 59.394 47.619 22.70 4.12 45.44 2.52
486 487 1.605710 AGATGCACTGCTGTGTGTTTC 59.394 47.619 22.70 14.49 45.44 2.78
487 488 1.683943 AGATGCACTGCTGTGTGTTT 58.316 45.000 22.70 7.41 45.44 2.83
488 489 1.683943 AAGATGCACTGCTGTGTGTT 58.316 45.000 22.70 8.01 45.44 3.32
489 490 1.683943 AAAGATGCACTGCTGTGTGT 58.316 45.000 22.70 12.88 45.44 3.72
497 498 1.782569 CACGCACAAAAAGATGCACTG 59.217 47.619 0.00 0.00 42.17 3.66
508 509 3.334751 CGTCGGCTCACGCACAAA 61.335 61.111 0.00 0.00 43.86 2.83
509 510 4.273257 TCGTCGGCTCACGCACAA 62.273 61.111 3.43 0.00 43.86 3.33
512 513 2.486636 ATTTCTCGTCGGCTCACGCA 62.487 55.000 3.43 0.00 43.86 5.24
544 550 2.613506 CGTTTCGTTGGGGCTGACC 61.614 63.158 0.00 0.00 39.11 4.02
551 557 1.574702 GGCCTTCTCGTTTCGTTGGG 61.575 60.000 0.00 0.00 0.00 4.12
552 558 1.866925 GGCCTTCTCGTTTCGTTGG 59.133 57.895 0.00 0.00 0.00 3.77
554 560 2.315386 GCGGCCTTCTCGTTTCGTT 61.315 57.895 0.00 0.00 0.00 3.85
555 561 2.737376 GCGGCCTTCTCGTTTCGT 60.737 61.111 0.00 0.00 0.00 3.85
556 562 3.488090 GGCGGCCTTCTCGTTTCG 61.488 66.667 12.87 0.00 0.00 3.46
557 563 3.488090 CGGCGGCCTTCTCGTTTC 61.488 66.667 18.34 0.00 0.00 2.78
559 565 4.736896 GACGGCGGCCTTCTCGTT 62.737 66.667 18.34 0.00 35.91 3.85
694 740 2.351276 GATTGGTGGGTGCGGAGT 59.649 61.111 0.00 0.00 0.00 3.85
920 1133 6.222038 TGTGTATCTGGATTCTGGAAGTAC 57.778 41.667 0.00 0.00 33.76 2.73
1802 2061 1.821136 GCCTCAGCAGCATTAACCTTT 59.179 47.619 0.00 0.00 39.53 3.11
2078 2337 2.158696 GGAGCTGCCTTCAAGGATATGT 60.159 50.000 7.98 0.00 37.67 2.29
2168 2427 4.758251 TGCGGTGATGTGCGGAGG 62.758 66.667 0.00 0.00 0.00 4.30
2387 2646 3.668447 GTTCACCAGCTCTGAGAATTGA 58.332 45.455 9.28 2.00 31.09 2.57
2495 2754 1.690219 CGGAGCAGTAGGAGGCCATT 61.690 60.000 5.01 0.00 0.00 3.16
2663 2922 1.745115 GATAGCCTGGCACAACGCA 60.745 57.895 22.65 0.00 45.17 5.24
2718 2977 5.480642 ACAGTCTTCACACATCTCTTGAT 57.519 39.130 0.00 0.00 0.00 2.57
2726 2985 4.344978 TCCTAGCTACAGTCTTCACACAT 58.655 43.478 0.00 0.00 0.00 3.21
2741 3000 1.548269 GTGCTCAGTGTCTTCCTAGCT 59.452 52.381 0.00 0.00 0.00 3.32
2948 3207 0.100503 GCTTGGCAAACACTGACGTT 59.899 50.000 0.00 0.00 34.74 3.99
2996 3255 1.531602 AACCTCCTTTGGCAGCACC 60.532 57.895 0.00 0.00 39.84 5.01
3358 3639 6.317391 GGCAGCTCTAGAAGAACATTGTAAAT 59.683 38.462 0.00 0.00 0.00 1.40
3455 3739 6.131544 ACACACACTGCCTTTTTAACTTAG 57.868 37.500 0.00 0.00 0.00 2.18
3481 3767 8.137437 GGACCCAGTACATTTATCATGAAAATG 58.863 37.037 25.43 25.43 45.59 2.32
3504 3790 6.094186 GGACCAGTTGATCTAAAAAGATGGAC 59.906 42.308 0.00 0.00 0.00 4.02
3510 3796 6.881065 TCATGAGGACCAGTTGATCTAAAAAG 59.119 38.462 0.00 0.00 0.00 2.27
3515 3801 4.352893 TGTCATGAGGACCAGTTGATCTA 58.647 43.478 0.00 0.00 46.38 1.98
3532 3818 5.880901 AGTTGGTTCTTGGACTATTGTCAT 58.119 37.500 9.51 0.00 44.61 3.06
3584 3870 4.151867 GCACGAGTTTTACTTTCCGAATCT 59.848 41.667 0.00 0.00 0.00 2.40
3650 3936 0.170784 GAGAAGTCCTCGTTCCCGTC 59.829 60.000 0.00 0.00 35.01 4.79
3656 3946 3.839293 CGAATTCAGAGAAGTCCTCGTT 58.161 45.455 6.22 0.00 46.49 3.85
3663 3954 4.187694 GGAGAATGCGAATTCAGAGAAGT 58.812 43.478 18.45 0.00 33.16 3.01
3677 3968 6.151817 ACTTGAAAAACTAGATGGGAGAATGC 59.848 38.462 0.00 0.00 0.00 3.56
3680 3971 7.777910 TGAAACTTGAAAAACTAGATGGGAGAA 59.222 33.333 0.00 0.00 0.00 2.87
3698 3989 6.881065 TCCATAGAAATCCAGACTGAAACTTG 59.119 38.462 3.32 0.00 0.00 3.16
3800 4197 9.866655 TGGGCTGAGATCATTAGTAAATAAATT 57.133 29.630 0.00 0.00 0.00 1.82
3804 4201 9.944376 GTTATGGGCTGAGATCATTAGTAAATA 57.056 33.333 0.00 0.00 0.00 1.40
3902 4307 8.366359 ACAATTTCCATATATATTTCCTGCCC 57.634 34.615 0.00 0.00 0.00 5.36
3938 4347 2.011540 TAAATACGCGTCACATGCCA 57.988 45.000 18.63 0.00 0.00 4.92
4001 5846 1.421410 GGTCAATGTACGCGCAGAGG 61.421 60.000 5.73 0.00 0.00 3.69
4023 5873 1.208052 TGCAGAGGAACATACTCCTGC 59.792 52.381 0.00 0.00 46.33 4.85
4048 5925 0.254747 TAGTTGGCAGGGTATGGTGC 59.745 55.000 0.00 0.00 39.08 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.