Multiple sequence alignment - TraesCS2A01G380000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G380000 chr2A 100.000 2930 0 0 1 2930 623089408 623086479 0.000000e+00 5411.0
1 TraesCS2A01G380000 chr2A 100.000 259 0 0 3140 3398 623086269 623086011 2.370000e-131 479.0
2 TraesCS2A01G380000 chr2D 96.298 2215 55 13 733 2930 480511020 480508816 0.000000e+00 3611.0
3 TraesCS2A01G380000 chr2D 94.512 164 7 2 3140 3302 480508550 480508388 5.630000e-63 252.0
4 TraesCS2A01G380000 chr2D 97.101 69 2 0 3330 3398 480508387 480508319 2.140000e-22 117.0
5 TraesCS2A01G380000 chr2B 96.062 2184 47 15 765 2930 563312410 563310248 0.000000e+00 3520.0
6 TraesCS2A01G380000 chr6D 82.186 247 32 8 410 648 12059325 12059083 5.750000e-48 202.0
7 TraesCS2A01G380000 chr4B 85.149 202 22 6 440 636 512745907 512745709 2.070000e-47 200.0
8 TraesCS2A01G380000 chr5D 84.804 204 24 5 442 640 493832306 493832507 7.440000e-47 198.0
9 TraesCS2A01G380000 chr5D 81.301 246 36 6 416 653 548308263 548308506 1.240000e-44 191.0
10 TraesCS2A01G380000 chr5D 94.595 37 2 0 3296 3332 548933464 548933500 1.320000e-04 58.4
11 TraesCS2A01G380000 chr7B 82.627 236 27 10 415 640 663853889 663854120 2.670000e-46 196.0
12 TraesCS2A01G380000 chr3D 83.410 217 28 4 414 622 611379611 611379827 9.620000e-46 195.0
13 TraesCS2A01G380000 chr1D 82.328 232 33 6 416 640 365221228 365221458 9.620000e-46 195.0
14 TraesCS2A01G380000 chr1D 85.938 64 8 1 278 340 69191494 69191431 2.190000e-07 67.6
15 TraesCS2A01G380000 chr1B 81.743 241 33 8 416 648 192286409 192286646 1.240000e-44 191.0
16 TraesCS2A01G380000 chr1B 86.364 66 6 2 279 341 297118241 297118176 6.080000e-08 69.4
17 TraesCS2A01G380000 chr3A 81.466 232 31 8 414 636 749871044 749870816 2.690000e-41 180.0
18 TraesCS2A01G380000 chr3A 80.769 234 36 6 414 640 352512630 352512861 1.250000e-39 174.0
19 TraesCS2A01G380000 chr3A 77.561 205 33 8 3140 3334 140955003 140955204 9.970000e-21 111.0
20 TraesCS2A01G380000 chr5B 79.336 271 41 11 381 640 530655270 530655536 3.480000e-40 176.0
21 TraesCS2A01G380000 chr5B 92.157 51 4 0 272 322 576212022 576211972 4.700000e-09 73.1
22 TraesCS2A01G380000 chr4A 85.093 161 17 5 3140 3297 60740456 60740300 1.260000e-34 158.0
23 TraesCS2A01G380000 chr7D 81.699 153 21 5 3140 3290 51553504 51553651 1.660000e-23 121.0
24 TraesCS2A01G380000 chr7D 83.099 71 11 1 243 312 85926693 85926623 2.830000e-06 63.9
25 TraesCS2A01G380000 chr6A 77.404 208 31 11 3140 3334 16349163 16349367 3.580000e-20 110.0
26 TraesCS2A01G380000 chr6A 84.810 79 11 1 243 320 552773747 552773669 1.010000e-10 78.7
27 TraesCS2A01G380000 chr5A 90.141 71 6 1 272 342 546505824 546505755 1.300000e-14 91.6
28 TraesCS2A01G380000 chr5A 89.474 57 4 2 272 327 608428615 608428560 1.690000e-08 71.3
29 TraesCS2A01G380000 chrUn 90.566 53 5 0 269 321 39302816 39302868 1.690000e-08 71.3
30 TraesCS2A01G380000 chr1A 81.111 90 13 4 241 327 528675158 528675070 6.080000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G380000 chr2A 623086011 623089408 3397 True 2945.000000 5411 100.000000 1 3398 2 chr2A.!!$R1 3397
1 TraesCS2A01G380000 chr2D 480508319 480511020 2701 True 1326.666667 3611 95.970333 733 3398 3 chr2D.!!$R1 2665
2 TraesCS2A01G380000 chr2B 563310248 563312410 2162 True 3520.000000 3520 96.062000 765 2930 1 chr2B.!!$R1 2165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 412 0.033366 GGCACAAATTTGCTCCGGTT 59.967 50.0 18.12 0.00 42.56 4.44 F
624 625 0.102120 CGCTTGTTGCAACCTGGAAA 59.898 50.0 26.14 12.52 43.06 3.13 F
731 732 0.238289 CAGTGATTTCGTGTGCACCC 59.762 55.0 15.69 0.48 31.85 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 2145 3.274288 GCAGATGGGTTAAACTCCTGAG 58.726 50.000 10.13 0.0 0.0 3.35 R
2355 2371 4.379290 CGTGCAATTTGGTCATATGTGTGA 60.379 41.667 1.90 0.0 0.0 3.58 R
2651 2670 3.550233 GCCTCCTTTCGAACAAAACTTCC 60.550 47.826 0.00 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.275781 CTGGGTGCCAGTTGGTTT 57.724 55.556 0.00 0.00 45.82 3.27
26 27 2.041153 CTGGGTGCCAGTTGGTTTC 58.959 57.895 0.00 0.00 45.82 2.78
27 28 1.795170 CTGGGTGCCAGTTGGTTTCG 61.795 60.000 0.00 0.00 45.82 3.46
28 29 2.335011 GGTGCCAGTTGGTTTCGC 59.665 61.111 0.00 0.00 37.57 4.70
29 30 2.193536 GGTGCCAGTTGGTTTCGCT 61.194 57.895 0.00 0.00 37.57 4.93
30 31 0.887387 GGTGCCAGTTGGTTTCGCTA 60.887 55.000 0.00 0.00 37.57 4.26
31 32 0.517316 GTGCCAGTTGGTTTCGCTAG 59.483 55.000 0.00 0.00 37.57 3.42
32 33 1.234615 TGCCAGTTGGTTTCGCTAGC 61.235 55.000 4.06 4.06 37.57 3.42
33 34 1.787847 CCAGTTGGTTTCGCTAGCG 59.212 57.895 30.91 30.91 41.35 4.26
34 35 1.132640 CAGTTGGTTTCGCTAGCGC 59.867 57.895 31.82 18.14 39.59 5.92
35 36 2.033194 AGTTGGTTTCGCTAGCGCC 61.033 57.895 31.82 25.88 39.59 6.53
36 37 2.033194 GTTGGTTTCGCTAGCGCCT 61.033 57.895 31.82 0.00 39.59 5.52
37 38 2.032634 TTGGTTTCGCTAGCGCCTG 61.033 57.895 31.82 6.63 39.59 4.85
38 39 2.125673 GGTTTCGCTAGCGCCTGA 60.126 61.111 31.82 12.50 39.59 3.86
39 40 1.740296 GGTTTCGCTAGCGCCTGAA 60.740 57.895 31.82 18.05 39.59 3.02
40 41 1.420312 GTTTCGCTAGCGCCTGAAC 59.580 57.895 31.82 25.05 39.59 3.18
41 42 1.740296 TTTCGCTAGCGCCTGAACC 60.740 57.895 31.82 0.00 39.59 3.62
42 43 3.982372 TTCGCTAGCGCCTGAACCG 62.982 63.158 31.82 3.00 39.59 4.44
49 50 2.511373 CGCCTGAACCGCTGCATA 60.511 61.111 0.00 0.00 0.00 3.14
50 51 2.528743 CGCCTGAACCGCTGCATAG 61.529 63.158 0.00 0.00 0.00 2.23
51 52 2.182842 GCCTGAACCGCTGCATAGG 61.183 63.158 0.00 6.10 0.00 2.57
52 53 1.522092 CCTGAACCGCTGCATAGGA 59.478 57.895 13.73 0.00 0.00 2.94
53 54 0.531532 CCTGAACCGCTGCATAGGAG 60.532 60.000 13.73 2.08 0.00 3.69
54 55 0.531532 CTGAACCGCTGCATAGGAGG 60.532 60.000 13.73 3.75 0.00 4.30
55 56 1.227674 GAACCGCTGCATAGGAGGG 60.228 63.158 13.73 0.00 0.00 4.30
56 57 1.686325 GAACCGCTGCATAGGAGGGA 61.686 60.000 13.73 0.00 0.00 4.20
57 58 1.690219 AACCGCTGCATAGGAGGGAG 61.690 60.000 13.73 0.00 0.00 4.30
58 59 2.030262 CGCTGCATAGGAGGGAGC 59.970 66.667 0.00 0.00 45.03 4.70
62 63 1.893544 CTGCATAGGAGGGAGCAATG 58.106 55.000 0.00 0.00 36.44 2.82
63 64 1.419012 CTGCATAGGAGGGAGCAATGA 59.581 52.381 0.00 0.00 36.44 2.57
64 65 1.845791 TGCATAGGAGGGAGCAATGAA 59.154 47.619 0.00 0.00 33.48 2.57
65 66 2.158711 TGCATAGGAGGGAGCAATGAAG 60.159 50.000 0.00 0.00 33.48 3.02
66 67 2.813354 GCATAGGAGGGAGCAATGAAGG 60.813 54.545 0.00 0.00 0.00 3.46
67 68 2.568546 TAGGAGGGAGCAATGAAGGA 57.431 50.000 0.00 0.00 0.00 3.36
68 69 1.673767 AGGAGGGAGCAATGAAGGAA 58.326 50.000 0.00 0.00 0.00 3.36
69 70 1.563410 AGGAGGGAGCAATGAAGGAAG 59.437 52.381 0.00 0.00 0.00 3.46
70 71 1.409381 GGAGGGAGCAATGAAGGAAGG 60.409 57.143 0.00 0.00 0.00 3.46
71 72 1.561542 GAGGGAGCAATGAAGGAAGGA 59.438 52.381 0.00 0.00 0.00 3.36
72 73 1.563410 AGGGAGCAATGAAGGAAGGAG 59.437 52.381 0.00 0.00 0.00 3.69
73 74 1.387539 GGAGCAATGAAGGAAGGAGC 58.612 55.000 0.00 0.00 0.00 4.70
74 75 1.012841 GAGCAATGAAGGAAGGAGCG 58.987 55.000 0.00 0.00 0.00 5.03
75 76 1.028868 AGCAATGAAGGAAGGAGCGC 61.029 55.000 0.00 0.00 0.00 5.92
76 77 1.997928 GCAATGAAGGAAGGAGCGCC 61.998 60.000 2.29 0.00 0.00 6.53
77 78 1.077429 AATGAAGGAAGGAGCGCCC 60.077 57.895 2.29 5.07 33.31 6.13
78 79 2.876368 AATGAAGGAAGGAGCGCCCG 62.876 60.000 2.29 0.00 40.87 6.13
79 80 4.083862 GAAGGAAGGAGCGCCCGT 62.084 66.667 2.29 2.89 40.87 5.28
80 81 3.607370 GAAGGAAGGAGCGCCCGTT 62.607 63.158 2.29 0.00 40.87 4.44
81 82 3.192103 AAGGAAGGAGCGCCCGTTT 62.192 57.895 2.29 0.00 40.87 3.60
82 83 3.431725 GGAAGGAGCGCCCGTTTG 61.432 66.667 2.29 0.00 40.87 2.93
83 84 3.431725 GAAGGAGCGCCCGTTTGG 61.432 66.667 2.29 0.00 40.87 3.28
109 110 4.351054 CCAAGGGGGCACGCTCTT 62.351 66.667 5.78 0.00 42.66 2.85
110 111 2.668632 CAAGGGGGCACGCTCTTA 59.331 61.111 5.78 0.00 42.66 2.10
111 112 1.450312 CAAGGGGGCACGCTCTTAG 60.450 63.158 5.78 0.00 42.66 2.18
112 113 3.330992 AAGGGGGCACGCTCTTAGC 62.331 63.158 5.78 0.00 42.66 3.09
113 114 3.787001 GGGGGCACGCTCTTAGCT 61.787 66.667 0.00 0.00 39.60 3.32
114 115 2.512515 GGGGCACGCTCTTAGCTG 60.513 66.667 0.00 0.00 39.60 4.24
115 116 3.198489 GGGCACGCTCTTAGCTGC 61.198 66.667 0.00 12.12 41.40 5.25
117 118 3.558411 GCACGCTCTTAGCTGCCG 61.558 66.667 0.00 0.00 39.60 5.69
118 119 3.558411 CACGCTCTTAGCTGCCGC 61.558 66.667 0.00 0.00 39.60 6.53
119 120 4.821589 ACGCTCTTAGCTGCCGCC 62.822 66.667 0.00 0.00 39.60 6.13
120 121 4.819761 CGCTCTTAGCTGCCGCCA 62.820 66.667 0.00 0.00 39.60 5.69
121 122 3.198489 GCTCTTAGCTGCCGCCAC 61.198 66.667 0.00 0.00 38.45 5.01
122 123 2.887568 CTCTTAGCTGCCGCCACG 60.888 66.667 0.00 0.00 36.60 4.94
123 124 3.649277 CTCTTAGCTGCCGCCACGT 62.649 63.158 0.00 0.00 36.60 4.49
124 125 3.490759 CTTAGCTGCCGCCACGTG 61.491 66.667 9.08 9.08 36.60 4.49
125 126 4.308458 TTAGCTGCCGCCACGTGT 62.308 61.111 15.65 0.00 36.60 4.49
126 127 4.735132 TAGCTGCCGCCACGTGTC 62.735 66.667 15.65 0.00 36.60 3.67
145 146 4.351054 CCCTGTGGGCGCTTCCTT 62.351 66.667 7.64 0.00 35.35 3.36
146 147 2.282462 CCTGTGGGCGCTTCCTTT 60.282 61.111 7.64 0.00 34.39 3.11
147 148 2.629656 CCTGTGGGCGCTTCCTTTG 61.630 63.158 7.64 0.00 34.39 2.77
148 149 1.600636 CTGTGGGCGCTTCCTTTGA 60.601 57.895 7.64 0.00 34.39 2.69
149 150 1.152860 TGTGGGCGCTTCCTTTGAA 60.153 52.632 7.64 0.00 34.39 2.69
150 151 0.539438 TGTGGGCGCTTCCTTTGAAT 60.539 50.000 7.64 0.00 34.39 2.57
151 152 0.603065 GTGGGCGCTTCCTTTGAATT 59.397 50.000 7.64 0.00 34.39 2.17
152 153 1.816224 GTGGGCGCTTCCTTTGAATTA 59.184 47.619 7.64 0.00 34.39 1.40
153 154 2.427095 GTGGGCGCTTCCTTTGAATTAT 59.573 45.455 7.64 0.00 34.39 1.28
154 155 3.096092 TGGGCGCTTCCTTTGAATTATT 58.904 40.909 7.64 0.00 34.39 1.40
155 156 3.513515 TGGGCGCTTCCTTTGAATTATTT 59.486 39.130 7.64 0.00 34.39 1.40
156 157 4.020662 TGGGCGCTTCCTTTGAATTATTTT 60.021 37.500 7.64 0.00 34.39 1.82
157 158 5.186021 TGGGCGCTTCCTTTGAATTATTTTA 59.814 36.000 7.64 0.00 34.39 1.52
158 159 5.518847 GGGCGCTTCCTTTGAATTATTTTAC 59.481 40.000 7.64 0.00 34.39 2.01
159 160 6.096695 GGCGCTTCCTTTGAATTATTTTACA 58.903 36.000 7.64 0.00 0.00 2.41
160 161 6.034577 GGCGCTTCCTTTGAATTATTTTACAC 59.965 38.462 7.64 0.00 0.00 2.90
161 162 6.237201 GCGCTTCCTTTGAATTATTTTACACG 60.237 38.462 0.00 0.00 0.00 4.49
162 163 6.237201 CGCTTCCTTTGAATTATTTTACACGC 60.237 38.462 0.00 0.00 0.00 5.34
163 164 6.584563 GCTTCCTTTGAATTATTTTACACGCA 59.415 34.615 0.00 0.00 0.00 5.24
164 165 7.275560 GCTTCCTTTGAATTATTTTACACGCAT 59.724 33.333 0.00 0.00 0.00 4.73
165 166 9.139174 CTTCCTTTGAATTATTTTACACGCATT 57.861 29.630 0.00 0.00 0.00 3.56
166 167 9.482627 TTCCTTTGAATTATTTTACACGCATTT 57.517 25.926 0.00 0.00 0.00 2.32
167 168 9.482627 TCCTTTGAATTATTTTACACGCATTTT 57.517 25.926 0.00 0.00 0.00 1.82
168 169 9.739786 CCTTTGAATTATTTTACACGCATTTTC 57.260 29.630 0.00 0.00 0.00 2.29
184 185 5.511234 CATTTTCTGCTTTCTAGATGGGG 57.489 43.478 0.00 0.00 0.00 4.96
185 186 4.657814 TTTTCTGCTTTCTAGATGGGGT 57.342 40.909 0.00 0.00 0.00 4.95
186 187 4.657814 TTTCTGCTTTCTAGATGGGGTT 57.342 40.909 0.00 0.00 0.00 4.11
187 188 4.657814 TTCTGCTTTCTAGATGGGGTTT 57.342 40.909 0.00 0.00 0.00 3.27
188 189 4.657814 TCTGCTTTCTAGATGGGGTTTT 57.342 40.909 0.00 0.00 0.00 2.43
189 190 4.998051 TCTGCTTTCTAGATGGGGTTTTT 58.002 39.130 0.00 0.00 0.00 1.94
190 191 5.010282 TCTGCTTTCTAGATGGGGTTTTTC 58.990 41.667 0.00 0.00 0.00 2.29
191 192 3.756434 TGCTTTCTAGATGGGGTTTTTCG 59.244 43.478 0.00 0.00 0.00 3.46
192 193 3.128764 GCTTTCTAGATGGGGTTTTTCGG 59.871 47.826 0.00 0.00 0.00 4.30
193 194 2.413310 TCTAGATGGGGTTTTTCGGC 57.587 50.000 0.00 0.00 0.00 5.54
194 195 1.913419 TCTAGATGGGGTTTTTCGGCT 59.087 47.619 0.00 0.00 0.00 5.52
195 196 2.307686 TCTAGATGGGGTTTTTCGGCTT 59.692 45.455 0.00 0.00 0.00 4.35
196 197 2.009681 AGATGGGGTTTTTCGGCTTT 57.990 45.000 0.00 0.00 0.00 3.51
197 198 2.325484 AGATGGGGTTTTTCGGCTTTT 58.675 42.857 0.00 0.00 0.00 2.27
198 199 2.299013 AGATGGGGTTTTTCGGCTTTTC 59.701 45.455 0.00 0.00 0.00 2.29
199 200 0.386113 TGGGGTTTTTCGGCTTTTCG 59.614 50.000 0.00 0.00 0.00 3.46
200 201 0.319211 GGGGTTTTTCGGCTTTTCGG 60.319 55.000 0.00 0.00 0.00 4.30
201 202 0.386476 GGGTTTTTCGGCTTTTCGGT 59.614 50.000 0.00 0.00 0.00 4.69
202 203 1.202440 GGGTTTTTCGGCTTTTCGGTT 60.202 47.619 0.00 0.00 0.00 4.44
203 204 2.542597 GGTTTTTCGGCTTTTCGGTTT 58.457 42.857 0.00 0.00 0.00 3.27
204 205 2.931325 GGTTTTTCGGCTTTTCGGTTTT 59.069 40.909 0.00 0.00 0.00 2.43
205 206 3.000523 GGTTTTTCGGCTTTTCGGTTTTC 59.999 43.478 0.00 0.00 0.00 2.29
206 207 2.495409 TTTCGGCTTTTCGGTTTTCC 57.505 45.000 0.00 0.00 0.00 3.13
207 208 1.390565 TTCGGCTTTTCGGTTTTCCA 58.609 45.000 0.00 0.00 40.70 3.53
208 209 0.664224 TCGGCTTTTCGGTTTTCCAC 59.336 50.000 0.00 0.00 40.70 4.02
209 210 0.666374 CGGCTTTTCGGTTTTCCACT 59.334 50.000 0.00 0.00 40.70 4.00
210 211 1.599419 CGGCTTTTCGGTTTTCCACTG 60.599 52.381 0.00 0.00 40.70 3.66
211 212 1.269569 GGCTTTTCGGTTTTCCACTGG 60.270 52.381 0.00 0.00 40.70 4.00
212 213 1.407618 GCTTTTCGGTTTTCCACTGGT 59.592 47.619 0.00 0.00 40.70 4.00
213 214 2.543031 GCTTTTCGGTTTTCCACTGGTC 60.543 50.000 0.00 0.00 40.70 4.02
214 215 2.721425 TTTCGGTTTTCCACTGGTCT 57.279 45.000 0.00 0.00 40.70 3.85
215 216 2.721425 TTCGGTTTTCCACTGGTCTT 57.279 45.000 0.00 0.00 40.70 3.01
216 217 2.721425 TCGGTTTTCCACTGGTCTTT 57.279 45.000 0.00 0.00 40.70 2.52
217 218 2.567985 TCGGTTTTCCACTGGTCTTTC 58.432 47.619 0.00 0.00 40.70 2.62
218 219 2.171870 TCGGTTTTCCACTGGTCTTTCT 59.828 45.455 0.00 0.00 40.70 2.52
219 220 2.949644 CGGTTTTCCACTGGTCTTTCTT 59.050 45.455 0.00 0.00 40.70 2.52
220 221 4.131596 CGGTTTTCCACTGGTCTTTCTTA 58.868 43.478 0.00 0.00 40.70 2.10
221 222 4.213482 CGGTTTTCCACTGGTCTTTCTTAG 59.787 45.833 0.00 0.00 40.70 2.18
222 223 4.023107 GGTTTTCCACTGGTCTTTCTTAGC 60.023 45.833 0.00 0.00 40.31 3.09
223 224 4.706842 TTTCCACTGGTCTTTCTTAGCT 57.293 40.909 0.00 0.00 0.00 3.32
224 225 3.963428 TCCACTGGTCTTTCTTAGCTC 57.037 47.619 0.00 0.00 0.00 4.09
225 226 3.511477 TCCACTGGTCTTTCTTAGCTCT 58.489 45.455 0.00 0.00 0.00 4.09
226 227 3.904339 TCCACTGGTCTTTCTTAGCTCTT 59.096 43.478 0.00 0.00 0.00 2.85
227 228 3.999663 CCACTGGTCTTTCTTAGCTCTTG 59.000 47.826 0.00 0.00 0.00 3.02
228 229 3.999663 CACTGGTCTTTCTTAGCTCTTGG 59.000 47.826 0.00 0.00 0.00 3.61
229 230 3.904339 ACTGGTCTTTCTTAGCTCTTGGA 59.096 43.478 0.00 0.00 0.00 3.53
230 231 4.348168 ACTGGTCTTTCTTAGCTCTTGGAA 59.652 41.667 0.00 0.00 0.00 3.53
231 232 5.163195 ACTGGTCTTTCTTAGCTCTTGGAAA 60.163 40.000 0.00 0.00 0.00 3.13
232 233 5.690865 TGGTCTTTCTTAGCTCTTGGAAAA 58.309 37.500 0.00 0.00 0.00 2.29
233 234 6.126409 TGGTCTTTCTTAGCTCTTGGAAAAA 58.874 36.000 0.00 0.00 0.00 1.94
268 269 9.487790 TTTTTCTTTCACAAGAGTCACAAAATT 57.512 25.926 0.00 0.00 40.28 1.82
269 270 8.464770 TTTCTTTCACAAGAGTCACAAAATTG 57.535 30.769 0.00 0.00 40.28 2.32
270 271 7.156876 TCTTTCACAAGAGTCACAAAATTGT 57.843 32.000 0.00 0.00 36.58 2.71
271 272 7.601856 TCTTTCACAAGAGTCACAAAATTGTT 58.398 30.769 0.00 0.00 35.05 2.83
272 273 8.087750 TCTTTCACAAGAGTCACAAAATTGTTT 58.912 29.630 0.00 0.00 35.05 2.83
273 274 8.600449 TTTCACAAGAGTCACAAAATTGTTTT 57.400 26.923 0.00 0.00 39.91 2.43
274 275 7.810766 TCACAAGAGTCACAAAATTGTTTTC 57.189 32.000 0.00 0.00 39.91 2.29
275 276 6.526325 TCACAAGAGTCACAAAATTGTTTTCG 59.474 34.615 0.00 0.00 39.91 3.46
276 277 6.307800 CACAAGAGTCACAAAATTGTTTTCGT 59.692 34.615 0.00 0.00 39.91 3.85
277 278 6.307800 ACAAGAGTCACAAAATTGTTTTCGTG 59.692 34.615 0.00 6.09 39.91 4.35
278 279 6.189677 AGAGTCACAAAATTGTTTTCGTGA 57.810 33.333 0.00 12.21 39.91 4.35
279 280 6.258160 AGAGTCACAAAATTGTTTTCGTGAG 58.742 36.000 14.63 0.00 39.91 3.51
280 281 6.093495 AGAGTCACAAAATTGTTTTCGTGAGA 59.907 34.615 14.63 0.00 39.91 3.27
281 282 6.258160 AGTCACAAAATTGTTTTCGTGAGAG 58.742 36.000 14.63 0.00 39.78 3.20
282 283 5.455525 GTCACAAAATTGTTTTCGTGAGAGG 59.544 40.000 14.63 0.00 39.78 3.69
283 284 4.207019 CACAAAATTGTTTTCGTGAGAGGC 59.793 41.667 0.00 0.00 39.78 4.70
284 285 4.142271 ACAAAATTGTTTTCGTGAGAGGCA 60.142 37.500 0.00 0.00 39.05 4.75
285 286 4.853924 AAATTGTTTTCGTGAGAGGCAT 57.146 36.364 0.00 0.00 43.69 4.40
286 287 3.837213 ATTGTTTTCGTGAGAGGCATG 57.163 42.857 0.00 0.00 43.69 4.06
287 288 2.542020 TGTTTTCGTGAGAGGCATGA 57.458 45.000 0.00 0.00 43.69 3.07
288 289 2.143122 TGTTTTCGTGAGAGGCATGAC 58.857 47.619 0.00 0.00 42.06 3.06
289 290 1.464997 GTTTTCGTGAGAGGCATGACC 59.535 52.381 0.00 0.00 42.06 4.02
290 291 0.389817 TTTCGTGAGAGGCATGACCG 60.390 55.000 0.00 0.00 46.52 4.79
291 292 1.532604 TTCGTGAGAGGCATGACCGT 61.533 55.000 0.00 0.00 46.52 4.83
292 293 1.807165 CGTGAGAGGCATGACCGTG 60.807 63.158 0.00 0.00 46.52 4.94
293 294 2.103042 GTGAGAGGCATGACCGTGC 61.103 63.158 0.00 5.68 46.52 5.34
299 300 2.887568 GCATGACCGTGCCTCTCG 60.888 66.667 0.00 0.00 39.18 4.04
300 301 2.885113 CATGACCGTGCCTCTCGA 59.115 61.111 0.00 0.00 0.00 4.04
301 302 1.215382 CATGACCGTGCCTCTCGAA 59.785 57.895 0.00 0.00 0.00 3.71
302 303 0.389817 CATGACCGTGCCTCTCGAAA 60.390 55.000 0.00 0.00 0.00 3.46
303 304 0.320374 ATGACCGTGCCTCTCGAAAA 59.680 50.000 0.00 0.00 0.00 2.29
304 305 0.599204 TGACCGTGCCTCTCGAAAAC 60.599 55.000 0.00 0.00 0.00 2.43
305 306 1.615107 GACCGTGCCTCTCGAAAACG 61.615 60.000 0.00 0.00 0.00 3.60
306 307 1.372499 CCGTGCCTCTCGAAAACGA 60.372 57.895 0.00 0.00 36.38 3.85
307 308 0.942410 CCGTGCCTCTCGAAAACGAA 60.942 55.000 0.00 0.00 36.38 3.85
308 309 0.856641 CGTGCCTCTCGAAAACGAAA 59.143 50.000 0.00 0.00 36.38 3.46
309 310 1.259507 CGTGCCTCTCGAAAACGAAAA 59.740 47.619 0.00 0.00 36.38 2.29
310 311 2.285950 CGTGCCTCTCGAAAACGAAAAA 60.286 45.455 0.00 0.00 36.38 1.94
337 338 2.432206 TTTTTGCTTCCGCTAAAGGC 57.568 45.000 0.00 0.00 40.79 4.35
338 339 1.323412 TTTTGCTTCCGCTAAAGGCA 58.677 45.000 0.00 0.00 41.91 4.75
339 340 0.596082 TTTGCTTCCGCTAAAGGCAC 59.404 50.000 0.00 0.00 41.91 5.01
340 341 1.573829 TTGCTTCCGCTAAAGGCACG 61.574 55.000 0.00 0.00 41.91 5.34
341 342 1.740296 GCTTCCGCTAAAGGCACGA 60.740 57.895 0.00 0.00 41.91 4.35
342 343 1.967597 GCTTCCGCTAAAGGCACGAC 61.968 60.000 0.00 0.00 41.91 4.34
343 344 1.359459 CTTCCGCTAAAGGCACGACC 61.359 60.000 0.00 0.00 41.91 4.79
344 345 3.186047 CCGCTAAAGGCACGACCG 61.186 66.667 0.00 0.00 46.52 4.79
345 346 2.126228 CGCTAAAGGCACGACCGA 60.126 61.111 0.00 0.00 46.52 4.69
346 347 1.518572 CGCTAAAGGCACGACCGAT 60.519 57.895 0.00 0.00 46.52 4.18
347 348 1.480219 CGCTAAAGGCACGACCGATC 61.480 60.000 0.00 0.00 46.52 3.69
364 365 6.986424 ACCGATCGAAAATGAAAAGAAAAC 57.014 33.333 18.66 0.00 0.00 2.43
365 366 6.500041 ACCGATCGAAAATGAAAAGAAAACA 58.500 32.000 18.66 0.00 0.00 2.83
366 367 6.416750 ACCGATCGAAAATGAAAAGAAAACAC 59.583 34.615 18.66 0.00 0.00 3.32
367 368 6.397480 CCGATCGAAAATGAAAAGAAAACACG 60.397 38.462 18.66 0.00 0.00 4.49
368 369 6.140108 CGATCGAAAATGAAAAGAAAACACGT 59.860 34.615 10.26 0.00 0.00 4.49
369 370 7.305190 CGATCGAAAATGAAAAGAAAACACGTT 60.305 33.333 10.26 0.00 0.00 3.99
370 371 7.569677 TCGAAAATGAAAAGAAAACACGTTT 57.430 28.000 0.00 0.00 0.00 3.60
371 372 7.659159 TCGAAAATGAAAAGAAAACACGTTTC 58.341 30.769 0.00 0.00 45.23 2.78
395 396 2.631160 TTTTTCTTCCGTGAGAGGCA 57.369 45.000 0.00 0.00 0.00 4.75
396 397 1.878953 TTTTCTTCCGTGAGAGGCAC 58.121 50.000 0.00 0.00 44.21 5.01
406 407 2.938869 GTGAGAGGCACAAATTTGCTC 58.061 47.619 18.12 15.38 46.91 4.26
407 408 1.888512 TGAGAGGCACAAATTTGCTCC 59.111 47.619 18.12 17.53 42.56 4.70
408 409 0.883833 AGAGGCACAAATTTGCTCCG 59.116 50.000 18.12 5.71 42.56 4.63
409 410 0.109132 GAGGCACAAATTTGCTCCGG 60.109 55.000 18.12 0.00 42.56 5.14
410 411 0.827507 AGGCACAAATTTGCTCCGGT 60.828 50.000 18.12 2.26 42.56 5.28
411 412 0.033366 GGCACAAATTTGCTCCGGTT 59.967 50.000 18.12 0.00 42.56 4.44
412 413 1.540146 GGCACAAATTTGCTCCGGTTT 60.540 47.619 18.12 0.00 42.56 3.27
413 414 1.526464 GCACAAATTTGCTCCGGTTTG 59.474 47.619 18.12 6.37 39.59 2.93
414 415 2.134346 CACAAATTTGCTCCGGTTTGG 58.866 47.619 18.12 3.57 36.23 3.28
415 416 1.760029 ACAAATTTGCTCCGGTTTGGT 59.240 42.857 18.12 1.73 39.52 3.67
416 417 2.169561 ACAAATTTGCTCCGGTTTGGTT 59.830 40.909 18.12 0.00 39.52 3.67
417 418 3.202097 CAAATTTGCTCCGGTTTGGTTT 58.798 40.909 5.01 0.00 39.52 3.27
418 419 3.552132 AATTTGCTCCGGTTTGGTTTT 57.448 38.095 0.00 0.00 39.52 2.43
419 420 3.552132 ATTTGCTCCGGTTTGGTTTTT 57.448 38.095 0.00 0.00 39.52 1.94
452 453 8.960591 AGAAAGATTTGTCACCTATTAACATGG 58.039 33.333 0.00 0.00 0.00 3.66
453 454 7.645058 AAGATTTGTCACCTATTAACATGGG 57.355 36.000 0.00 0.00 37.07 4.00
454 455 6.969043 AGATTTGTCACCTATTAACATGGGA 58.031 36.000 0.00 0.00 34.53 4.37
455 456 7.586349 AGATTTGTCACCTATTAACATGGGAT 58.414 34.615 0.00 0.00 34.53 3.85
456 457 8.061304 AGATTTGTCACCTATTAACATGGGATT 58.939 33.333 0.00 0.00 34.53 3.01
457 458 8.608185 ATTTGTCACCTATTAACATGGGATTT 57.392 30.769 0.00 0.00 34.53 2.17
458 459 9.707957 ATTTGTCACCTATTAACATGGGATTTA 57.292 29.630 0.00 0.00 34.53 1.40
459 460 8.746052 TTGTCACCTATTAACATGGGATTTAG 57.254 34.615 0.00 0.00 34.53 1.85
460 461 7.867921 TGTCACCTATTAACATGGGATTTAGT 58.132 34.615 0.00 0.00 34.53 2.24
461 462 8.333235 TGTCACCTATTAACATGGGATTTAGTT 58.667 33.333 0.00 0.00 34.53 2.24
462 463 9.185680 GTCACCTATTAACATGGGATTTAGTTT 57.814 33.333 0.00 0.00 34.53 2.66
463 464 9.762381 TCACCTATTAACATGGGATTTAGTTTT 57.238 29.630 0.00 0.00 34.53 2.43
464 465 9.801873 CACCTATTAACATGGGATTTAGTTTTG 57.198 33.333 0.00 0.00 34.53 2.44
465 466 9.762381 ACCTATTAACATGGGATTTAGTTTTGA 57.238 29.630 0.00 0.00 34.53 2.69
473 474 9.492973 ACATGGGATTTAGTTTTGAAAATCTTG 57.507 29.630 0.00 6.25 33.46 3.02
474 475 9.709495 CATGGGATTTAGTTTTGAAAATCTTGA 57.291 29.630 0.00 0.00 33.46 3.02
476 477 9.762933 TGGGATTTAGTTTTGAAAATCTTGAAG 57.237 29.630 0.00 0.00 33.46 3.02
477 478 9.764363 GGGATTTAGTTTTGAAAATCTTGAAGT 57.236 29.630 0.00 0.00 33.46 3.01
481 482 9.801873 TTTAGTTTTGAAAATCTTGAAGTGAGG 57.198 29.630 0.00 0.00 0.00 3.86
482 483 7.645058 AGTTTTGAAAATCTTGAAGTGAGGA 57.355 32.000 0.00 0.00 0.00 3.71
483 484 8.066612 AGTTTTGAAAATCTTGAAGTGAGGAA 57.933 30.769 0.00 0.00 0.00 3.36
484 485 8.699130 AGTTTTGAAAATCTTGAAGTGAGGAAT 58.301 29.630 0.00 0.00 0.00 3.01
485 486 8.972349 GTTTTGAAAATCTTGAAGTGAGGAATC 58.028 33.333 0.00 0.00 0.00 2.52
486 487 6.824305 TGAAAATCTTGAAGTGAGGAATCC 57.176 37.500 0.00 0.00 0.00 3.01
487 488 6.306199 TGAAAATCTTGAAGTGAGGAATCCA 58.694 36.000 0.61 0.00 0.00 3.41
488 489 6.777091 TGAAAATCTTGAAGTGAGGAATCCAA 59.223 34.615 0.61 0.00 0.00 3.53
489 490 6.581171 AAATCTTGAAGTGAGGAATCCAAC 57.419 37.500 0.61 0.00 0.00 3.77
490 491 3.664107 TCTTGAAGTGAGGAATCCAACG 58.336 45.455 0.61 0.00 0.00 4.10
491 492 2.472695 TGAAGTGAGGAATCCAACGG 57.527 50.000 0.61 0.00 0.00 4.44
492 493 1.697432 TGAAGTGAGGAATCCAACGGT 59.303 47.619 0.61 0.00 0.00 4.83
493 494 2.076863 GAAGTGAGGAATCCAACGGTG 58.923 52.381 0.61 0.00 0.00 4.94
494 495 1.348064 AGTGAGGAATCCAACGGTGA 58.652 50.000 0.00 0.00 0.00 4.02
495 496 1.002087 AGTGAGGAATCCAACGGTGAC 59.998 52.381 0.00 0.00 0.00 3.67
496 497 1.002087 GTGAGGAATCCAACGGTGACT 59.998 52.381 0.00 0.00 0.00 3.41
497 498 1.001974 TGAGGAATCCAACGGTGACTG 59.998 52.381 0.00 0.00 0.00 3.51
498 499 1.002087 GAGGAATCCAACGGTGACTGT 59.998 52.381 0.00 0.00 0.00 3.55
499 500 1.420138 AGGAATCCAACGGTGACTGTT 59.580 47.619 0.00 3.50 0.00 3.16
500 501 2.158667 AGGAATCCAACGGTGACTGTTT 60.159 45.455 7.13 0.00 0.00 2.83
501 502 2.621526 GGAATCCAACGGTGACTGTTTT 59.378 45.455 7.13 0.00 0.00 2.43
502 503 3.816523 GGAATCCAACGGTGACTGTTTTA 59.183 43.478 7.13 0.00 0.00 1.52
503 504 4.276431 GGAATCCAACGGTGACTGTTTTAA 59.724 41.667 7.13 0.00 0.00 1.52
504 505 5.432885 AATCCAACGGTGACTGTTTTAAG 57.567 39.130 7.13 0.00 0.00 1.85
505 506 4.139859 TCCAACGGTGACTGTTTTAAGA 57.860 40.909 7.13 0.00 0.00 2.10
506 507 4.710324 TCCAACGGTGACTGTTTTAAGAT 58.290 39.130 7.13 0.00 0.00 2.40
507 508 5.127491 TCCAACGGTGACTGTTTTAAGATT 58.873 37.500 7.13 0.00 0.00 2.40
508 509 5.591067 TCCAACGGTGACTGTTTTAAGATTT 59.409 36.000 7.13 0.00 0.00 2.17
509 510 5.685511 CCAACGGTGACTGTTTTAAGATTTG 59.314 40.000 7.13 0.00 0.00 2.32
510 511 5.432885 ACGGTGACTGTTTTAAGATTTGG 57.567 39.130 0.00 0.00 0.00 3.28
511 512 5.127491 ACGGTGACTGTTTTAAGATTTGGA 58.873 37.500 0.00 0.00 0.00 3.53
512 513 5.008316 ACGGTGACTGTTTTAAGATTTGGAC 59.992 40.000 0.00 0.00 0.00 4.02
513 514 5.008217 CGGTGACTGTTTTAAGATTTGGACA 59.992 40.000 0.00 0.00 0.00 4.02
514 515 6.206498 GGTGACTGTTTTAAGATTTGGACAC 58.794 40.000 0.00 0.00 0.00 3.67
515 516 5.907391 GTGACTGTTTTAAGATTTGGACACG 59.093 40.000 0.00 0.00 0.00 4.49
516 517 5.008217 TGACTGTTTTAAGATTTGGACACGG 59.992 40.000 0.00 0.00 0.00 4.94
517 518 4.885325 ACTGTTTTAAGATTTGGACACGGT 59.115 37.500 0.00 0.00 0.00 4.83
518 519 5.358725 ACTGTTTTAAGATTTGGACACGGTT 59.641 36.000 0.00 0.00 0.00 4.44
519 520 6.127563 ACTGTTTTAAGATTTGGACACGGTTT 60.128 34.615 0.00 0.00 0.00 3.27
520 521 7.067251 ACTGTTTTAAGATTTGGACACGGTTTA 59.933 33.333 0.00 0.00 0.00 2.01
521 522 7.769220 TGTTTTAAGATTTGGACACGGTTTAA 58.231 30.769 0.00 0.00 0.00 1.52
522 523 7.916450 TGTTTTAAGATTTGGACACGGTTTAAG 59.084 33.333 0.00 0.00 0.00 1.85
523 524 7.804843 TTTAAGATTTGGACACGGTTTAAGA 57.195 32.000 0.00 0.00 0.00 2.10
524 525 5.941948 AAGATTTGGACACGGTTTAAGAG 57.058 39.130 0.00 0.00 0.00 2.85
525 526 5.223449 AGATTTGGACACGGTTTAAGAGA 57.777 39.130 0.00 0.00 0.00 3.10
526 527 5.805728 AGATTTGGACACGGTTTAAGAGAT 58.194 37.500 0.00 0.00 0.00 2.75
527 528 6.942976 AGATTTGGACACGGTTTAAGAGATA 58.057 36.000 0.00 0.00 0.00 1.98
528 529 7.391620 AGATTTGGACACGGTTTAAGAGATAA 58.608 34.615 0.00 0.00 0.00 1.75
529 530 7.881232 AGATTTGGACACGGTTTAAGAGATAAA 59.119 33.333 0.00 0.00 0.00 1.40
530 531 7.804843 TTTGGACACGGTTTAAGAGATAAAA 57.195 32.000 0.00 0.00 35.33 1.52
531 532 6.790285 TGGACACGGTTTAAGAGATAAAAC 57.210 37.500 0.00 0.00 37.75 2.43
532 533 6.289834 TGGACACGGTTTAAGAGATAAAACA 58.710 36.000 0.00 0.00 40.57 2.83
533 534 6.938030 TGGACACGGTTTAAGAGATAAAACAT 59.062 34.615 0.00 0.00 40.57 2.71
534 535 7.446013 TGGACACGGTTTAAGAGATAAAACATT 59.554 33.333 0.00 0.00 40.57 2.71
535 536 8.294577 GGACACGGTTTAAGAGATAAAACATTT 58.705 33.333 0.00 0.00 40.57 2.32
536 537 9.673454 GACACGGTTTAAGAGATAAAACATTTT 57.327 29.630 0.00 0.00 40.57 1.82
537 538 9.458374 ACACGGTTTAAGAGATAAAACATTTTG 57.542 29.630 0.00 0.00 40.57 2.44
538 539 9.672086 CACGGTTTAAGAGATAAAACATTTTGA 57.328 29.630 0.00 0.00 40.57 2.69
583 584 3.564053 AAAAACTCCCAGGTTACGACA 57.436 42.857 0.00 0.00 0.00 4.35
584 585 3.564053 AAAACTCCCAGGTTACGACAA 57.436 42.857 0.00 0.00 0.00 3.18
585 586 3.782656 AAACTCCCAGGTTACGACAAT 57.217 42.857 0.00 0.00 0.00 2.71
586 587 3.782656 AACTCCCAGGTTACGACAATT 57.217 42.857 0.00 0.00 0.00 2.32
587 588 3.053831 ACTCCCAGGTTACGACAATTG 57.946 47.619 3.24 3.24 0.00 2.32
588 589 2.290071 ACTCCCAGGTTACGACAATTGG 60.290 50.000 10.83 0.00 0.00 3.16
589 590 0.808755 CCCAGGTTACGACAATTGGC 59.191 55.000 10.83 5.64 0.00 4.52
597 598 3.218721 CGACAATTGGCGTACATGC 57.781 52.632 25.67 0.00 42.66 4.06
598 599 0.445829 CGACAATTGGCGTACATGCA 59.554 50.000 25.67 0.00 42.66 3.96
599 600 1.529622 CGACAATTGGCGTACATGCAG 60.530 52.381 25.67 0.00 42.66 4.41
600 601 1.468520 GACAATTGGCGTACATGCAGT 59.531 47.619 10.83 0.00 36.28 4.40
601 602 1.468520 ACAATTGGCGTACATGCAGTC 59.531 47.619 10.83 0.00 36.28 3.51
602 603 1.094785 AATTGGCGTACATGCAGTCC 58.905 50.000 0.00 0.00 36.28 3.85
603 604 1.089481 ATTGGCGTACATGCAGTCCG 61.089 55.000 0.00 0.00 36.28 4.79
606 607 3.254654 CGTACATGCAGTCCGCCG 61.255 66.667 0.00 0.00 41.33 6.46
607 608 3.564027 GTACATGCAGTCCGCCGC 61.564 66.667 0.00 0.00 41.33 6.53
608 609 3.770040 TACATGCAGTCCGCCGCT 61.770 61.111 0.00 0.00 41.33 5.52
609 610 3.309436 TACATGCAGTCCGCCGCTT 62.309 57.895 0.00 0.00 41.33 4.68
610 611 4.170062 CATGCAGTCCGCCGCTTG 62.170 66.667 0.00 0.00 41.33 4.01
611 612 4.704833 ATGCAGTCCGCCGCTTGT 62.705 61.111 0.00 0.00 41.33 3.16
612 613 4.927782 TGCAGTCCGCCGCTTGTT 62.928 61.111 0.00 0.00 41.33 2.83
613 614 4.389576 GCAGTCCGCCGCTTGTTG 62.390 66.667 0.00 0.00 32.94 3.33
614 615 4.389576 CAGTCCGCCGCTTGTTGC 62.390 66.667 0.00 0.00 38.57 4.17
615 616 4.927782 AGTCCGCCGCTTGTTGCA 62.928 61.111 0.00 0.00 43.06 4.08
616 617 3.959975 GTCCGCCGCTTGTTGCAA 61.960 61.111 0.00 0.00 43.06 4.08
617 618 3.959975 TCCGCCGCTTGTTGCAAC 61.960 61.111 22.83 22.83 43.06 4.17
618 619 4.999939 CCGCCGCTTGTTGCAACC 63.000 66.667 26.14 10.47 43.06 3.77
619 620 3.964875 CGCCGCTTGTTGCAACCT 61.965 61.111 26.14 0.00 43.06 3.50
620 621 2.355009 GCCGCTTGTTGCAACCTG 60.355 61.111 26.14 18.69 43.06 4.00
621 622 2.336088 CCGCTTGTTGCAACCTGG 59.664 61.111 26.14 17.53 43.06 4.45
622 623 2.192861 CCGCTTGTTGCAACCTGGA 61.193 57.895 26.14 5.10 43.06 3.86
623 624 1.732917 CGCTTGTTGCAACCTGGAA 59.267 52.632 26.14 12.88 43.06 3.53
624 625 0.102120 CGCTTGTTGCAACCTGGAAA 59.898 50.000 26.14 12.52 43.06 3.13
625 626 1.856802 GCTTGTTGCAACCTGGAAAG 58.143 50.000 26.14 21.33 42.31 2.62
626 627 1.408702 GCTTGTTGCAACCTGGAAAGA 59.591 47.619 26.14 2.32 42.31 2.52
627 628 2.036346 GCTTGTTGCAACCTGGAAAGAT 59.964 45.455 26.14 0.00 42.31 2.40
628 629 3.645884 CTTGTTGCAACCTGGAAAGATG 58.354 45.455 26.14 4.20 26.96 2.90
629 630 1.962807 TGTTGCAACCTGGAAAGATGG 59.037 47.619 26.14 0.00 26.96 3.51
630 631 1.273327 GTTGCAACCTGGAAAGATGGG 59.727 52.381 19.15 0.00 26.96 4.00
631 632 0.776810 TGCAACCTGGAAAGATGGGA 59.223 50.000 0.00 0.00 0.00 4.37
632 633 1.272092 TGCAACCTGGAAAGATGGGAG 60.272 52.381 0.00 0.00 0.00 4.30
633 634 1.272147 GCAACCTGGAAAGATGGGAGT 60.272 52.381 0.00 0.00 0.00 3.85
634 635 2.440409 CAACCTGGAAAGATGGGAGTG 58.560 52.381 0.00 0.00 0.00 3.51
635 636 2.040278 CAACCTGGAAAGATGGGAGTGA 59.960 50.000 0.00 0.00 0.00 3.41
636 637 1.630878 ACCTGGAAAGATGGGAGTGAC 59.369 52.381 0.00 0.00 0.00 3.67
637 638 1.912043 CCTGGAAAGATGGGAGTGACT 59.088 52.381 0.00 0.00 0.00 3.41
638 639 2.307098 CCTGGAAAGATGGGAGTGACTT 59.693 50.000 0.00 0.00 0.00 3.01
639 640 3.245052 CCTGGAAAGATGGGAGTGACTTT 60.245 47.826 0.00 0.00 35.68 2.66
640 641 4.401925 CTGGAAAGATGGGAGTGACTTTT 58.598 43.478 0.00 0.00 33.61 2.27
641 642 4.803452 TGGAAAGATGGGAGTGACTTTTT 58.197 39.130 0.00 0.00 33.61 1.94
642 643 4.827284 TGGAAAGATGGGAGTGACTTTTTC 59.173 41.667 0.00 0.00 33.61 2.29
643 644 4.827284 GGAAAGATGGGAGTGACTTTTTCA 59.173 41.667 0.00 0.00 33.61 2.69
644 645 5.301805 GGAAAGATGGGAGTGACTTTTTCAA 59.698 40.000 0.00 0.00 35.39 2.69
645 646 6.183360 GGAAAGATGGGAGTGACTTTTTCAAA 60.183 38.462 0.00 0.00 35.39 2.69
646 647 6.396829 AAGATGGGAGTGACTTTTTCAAAG 57.603 37.500 0.00 0.00 35.39 2.77
647 648 5.694995 AGATGGGAGTGACTTTTTCAAAGA 58.305 37.500 3.24 0.00 35.39 2.52
648 649 6.129179 AGATGGGAGTGACTTTTTCAAAGAA 58.871 36.000 3.24 0.00 35.39 2.52
649 650 6.779539 AGATGGGAGTGACTTTTTCAAAGAAT 59.220 34.615 3.24 0.00 35.39 2.40
650 651 6.147864 TGGGAGTGACTTTTTCAAAGAATG 57.852 37.500 3.24 0.00 35.39 2.67
651 652 4.984785 GGGAGTGACTTTTTCAAAGAATGC 59.015 41.667 3.24 0.00 35.39 3.56
652 653 5.221322 GGGAGTGACTTTTTCAAAGAATGCT 60.221 40.000 3.24 0.00 35.39 3.79
653 654 6.276091 GGAGTGACTTTTTCAAAGAATGCTT 58.724 36.000 3.24 0.00 35.39 3.91
654 655 6.758416 GGAGTGACTTTTTCAAAGAATGCTTT 59.242 34.615 3.24 0.00 44.93 3.51
655 656 7.278646 GGAGTGACTTTTTCAAAGAATGCTTTT 59.721 33.333 0.00 0.00 42.27 2.27
656 657 8.552083 AGTGACTTTTTCAAAGAATGCTTTTT 57.448 26.923 0.00 0.00 42.27 1.94
680 681 3.975168 TCTTAAGGGTACAAGGAGTGC 57.025 47.619 1.85 0.00 0.00 4.40
681 682 3.517612 TCTTAAGGGTACAAGGAGTGCT 58.482 45.455 1.85 0.00 32.88 4.40
682 683 3.514309 TCTTAAGGGTACAAGGAGTGCTC 59.486 47.826 1.85 0.00 32.83 4.26
708 709 4.924305 TTTTTGAGATGAAGTGCTGCTT 57.076 36.364 0.00 0.00 40.76 3.91
710 711 6.389830 TTTTTGAGATGAAGTGCTGCTTAA 57.610 33.333 0.00 0.00 37.59 1.85
711 712 6.579666 TTTTGAGATGAAGTGCTGCTTAAT 57.420 33.333 0.00 0.00 37.59 1.40
712 713 5.808042 TTGAGATGAAGTGCTGCTTAATC 57.192 39.130 0.00 9.55 42.81 1.75
713 714 4.835678 TGAGATGAAGTGCTGCTTAATCA 58.164 39.130 16.20 0.95 44.23 2.57
714 715 4.874396 TGAGATGAAGTGCTGCTTAATCAG 59.126 41.667 16.20 1.84 44.23 2.90
715 716 4.841422 AGATGAAGTGCTGCTTAATCAGT 58.159 39.130 16.20 0.00 44.23 3.41
716 717 4.634883 AGATGAAGTGCTGCTTAATCAGTG 59.365 41.667 16.20 0.00 44.23 3.66
717 718 4.006780 TGAAGTGCTGCTTAATCAGTGA 57.993 40.909 8.05 0.00 37.59 3.41
718 719 4.582869 TGAAGTGCTGCTTAATCAGTGAT 58.417 39.130 8.05 0.00 37.59 3.06
719 720 5.005740 TGAAGTGCTGCTTAATCAGTGATT 58.994 37.500 21.57 21.57 37.59 2.57
720 721 5.474532 TGAAGTGCTGCTTAATCAGTGATTT 59.525 36.000 22.90 8.14 37.59 2.17
721 722 5.557891 AGTGCTGCTTAATCAGTGATTTC 57.442 39.130 22.90 13.00 36.49 2.17
722 723 4.093998 AGTGCTGCTTAATCAGTGATTTCG 59.906 41.667 22.90 14.81 36.49 3.46
723 724 4.002982 TGCTGCTTAATCAGTGATTTCGT 58.997 39.130 22.90 1.89 36.49 3.85
724 725 4.142838 TGCTGCTTAATCAGTGATTTCGTG 60.143 41.667 22.90 11.77 36.49 4.35
725 726 4.142816 GCTGCTTAATCAGTGATTTCGTGT 60.143 41.667 22.90 0.75 36.49 4.49
726 727 5.281693 TGCTTAATCAGTGATTTCGTGTG 57.718 39.130 22.90 8.76 33.95 3.82
727 728 4.091424 GCTTAATCAGTGATTTCGTGTGC 58.909 43.478 22.90 13.77 33.95 4.57
728 729 4.378356 GCTTAATCAGTGATTTCGTGTGCA 60.378 41.667 22.90 0.17 33.95 4.57
729 730 3.542712 AATCAGTGATTTCGTGTGCAC 57.457 42.857 12.75 10.75 0.00 4.57
730 731 1.225855 TCAGTGATTTCGTGTGCACC 58.774 50.000 15.69 4.74 31.85 5.01
731 732 0.238289 CAGTGATTTCGTGTGCACCC 59.762 55.000 15.69 0.48 31.85 4.61
737 738 4.953868 TCGTGTGCACCCCGTTCG 62.954 66.667 15.69 9.45 0.00 3.95
760 761 0.478072 ATTATTGGGCCAGGATGCGA 59.522 50.000 6.23 0.00 31.97 5.10
763 764 1.322538 ATTGGGCCAGGATGCGAAAC 61.323 55.000 6.23 0.00 31.97 2.78
772 773 5.303886 CCAGGATGCGAAACGAAGTTAGC 62.304 52.174 0.00 6.42 44.01 3.09
826 827 4.543084 GCCAGATTTCAGCCGCGC 62.543 66.667 0.00 0.00 0.00 6.86
881 896 3.537580 ACACGCAGTTTTTCTTCAGGTA 58.462 40.909 0.00 0.00 41.61 3.08
882 897 4.134563 ACACGCAGTTTTTCTTCAGGTAT 58.865 39.130 0.00 0.00 41.61 2.73
883 898 5.302360 ACACGCAGTTTTTCTTCAGGTATA 58.698 37.500 0.00 0.00 41.61 1.47
884 899 5.408604 ACACGCAGTTTTTCTTCAGGTATAG 59.591 40.000 0.00 0.00 41.61 1.31
946 962 5.836358 AGGATTGACAGTAGGAGTAGGATTC 59.164 44.000 0.00 0.00 0.00 2.52
1047 1063 4.825679 GAGGGGGTGGGGGAGGAG 62.826 77.778 0.00 0.00 0.00 3.69
1175 1191 3.660621 GCAGGTGCTCAAGTCCAC 58.339 61.111 0.00 0.00 38.21 4.02
1802 1818 2.507322 TTCTTTGCCAACGCGATCGC 62.507 55.000 29.80 29.80 39.84 4.58
1869 1885 2.030805 GCAAATTATGGTCTCGGATGCC 60.031 50.000 0.00 0.00 0.00 4.40
2355 2371 3.439857 TTTTACAAGGCTGAGAGGCAT 57.560 42.857 0.00 0.00 44.19 4.40
2548 2564 7.110810 AGGCCTCAAGGTAATTAAACTACTTC 58.889 38.462 0.00 0.00 37.57 3.01
2549 2565 7.037514 AGGCCTCAAGGTAATTAAACTACTTCT 60.038 37.037 0.00 0.00 37.57 2.85
2651 2670 2.031516 CGTCAGGCTCCACTGCTTG 61.032 63.158 0.00 0.00 40.71 4.01
2798 2817 7.202176 GGAAGAGAGGATAATTTTGAGGAGGAT 60.202 40.741 0.00 0.00 0.00 3.24
2856 2875 2.835764 TCTACTTTATCCAACAGCCGGT 59.164 45.455 1.90 0.00 0.00 5.28
2857 2876 2.109425 ACTTTATCCAACAGCCGGTC 57.891 50.000 1.90 0.00 0.00 4.79
2875 2894 5.047235 GCCGGTCTCACCTTATATAGATGTT 60.047 44.000 1.90 0.00 35.66 2.71
2887 2906 8.744652 CCTTATATAGATGTTGAGACACCCTAG 58.255 40.741 0.00 0.00 38.91 3.02
2895 2914 4.410883 TGTTGAGACACCCTAGGAAAAAGA 59.589 41.667 11.48 0.00 0.00 2.52
2899 2918 4.386711 AGACACCCTAGGAAAAAGAAACG 58.613 43.478 11.48 0.00 0.00 3.60
3163 3238 6.949352 ACAGGGCATAAATCACTATTTCAG 57.051 37.500 0.00 0.00 36.67 3.02
3248 3324 1.330521 CTATTCATGTGTTTCGGGCCG 59.669 52.381 22.51 22.51 0.00 6.13
3279 3355 1.467920 GCTTGGGATTTGAGGTCAGG 58.532 55.000 0.00 0.00 0.00 3.86
3302 3378 3.373565 CAAAGCCCGGCCTGAACC 61.374 66.667 5.55 0.00 0.00 3.62
3303 3379 3.897122 AAAGCCCGGCCTGAACCA 61.897 61.111 5.55 0.00 0.00 3.67
3304 3380 3.868200 AAAGCCCGGCCTGAACCAG 62.868 63.158 5.55 0.00 0.00 4.00
3312 3388 4.410400 CCTGAACCAGGCCCGACC 62.410 72.222 0.00 0.00 45.13 4.79
3321 3397 3.866582 GGCCCGACCTGGAGGATG 61.867 72.222 13.08 1.12 42.00 3.51
3322 3398 4.554036 GCCCGACCTGGAGGATGC 62.554 72.222 13.08 6.52 42.00 3.91
3323 3399 3.866582 CCCGACCTGGAGGATGCC 61.867 72.222 13.08 0.00 42.00 4.40
3324 3400 3.866582 CCGACCTGGAGGATGCCC 61.867 72.222 0.00 0.00 42.00 5.36
3325 3401 3.083349 CGACCTGGAGGATGCCCA 61.083 66.667 0.00 0.00 38.94 5.36
3344 3420 3.005791 CCCAGGTTTACTTGAAAGGCTTG 59.994 47.826 0.00 0.00 0.00 4.01
3346 3422 3.636764 CAGGTTTACTTGAAAGGCTTGGT 59.363 43.478 0.00 0.66 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.826054 CGAAACCAACTGGCACCCA 60.826 57.895 0.00 0.00 39.32 4.51
10 11 3.039134 CGAAACCAACTGGCACCC 58.961 61.111 0.00 0.00 39.32 4.61
11 12 0.887387 TAGCGAAACCAACTGGCACC 60.887 55.000 0.00 0.00 39.32 5.01
12 13 0.517316 CTAGCGAAACCAACTGGCAC 59.483 55.000 0.00 0.00 39.32 5.01
13 14 1.234615 GCTAGCGAAACCAACTGGCA 61.235 55.000 0.00 0.00 37.78 4.92
14 15 1.502190 GCTAGCGAAACCAACTGGC 59.498 57.895 0.00 0.00 39.32 4.85
15 16 1.787847 CGCTAGCGAAACCAACTGG 59.212 57.895 32.98 0.00 42.83 4.00
16 17 1.132640 GCGCTAGCGAAACCAACTG 59.867 57.895 39.52 7.96 42.83 3.16
17 18 2.033194 GGCGCTAGCGAAACCAACT 61.033 57.895 39.52 0.00 46.35 3.16
18 19 2.033194 AGGCGCTAGCGAAACCAAC 61.033 57.895 39.52 19.69 46.35 3.77
19 20 2.032634 CAGGCGCTAGCGAAACCAA 61.033 57.895 39.52 0.00 46.35 3.67
20 21 2.434185 CAGGCGCTAGCGAAACCA 60.434 61.111 39.52 0.00 46.35 3.67
21 22 1.740296 TTCAGGCGCTAGCGAAACC 60.740 57.895 39.52 29.26 46.35 3.27
22 23 1.420312 GTTCAGGCGCTAGCGAAAC 59.580 57.895 39.52 28.38 46.35 2.78
23 24 1.740296 GGTTCAGGCGCTAGCGAAA 60.740 57.895 39.52 22.82 46.35 3.46
24 25 2.125673 GGTTCAGGCGCTAGCGAA 60.126 61.111 39.52 22.11 46.35 4.70
25 26 4.492160 CGGTTCAGGCGCTAGCGA 62.492 66.667 39.52 17.08 46.35 4.93
27 28 4.821589 AGCGGTTCAGGCGCTAGC 62.822 66.667 7.64 4.06 44.18 3.42
28 29 2.887568 CAGCGGTTCAGGCGCTAG 60.888 66.667 7.64 0.00 37.20 3.42
32 33 2.511373 TATGCAGCGGTTCAGGCG 60.511 61.111 0.00 0.00 35.00 5.52
33 34 2.182842 CCTATGCAGCGGTTCAGGC 61.183 63.158 0.00 0.00 0.00 4.85
34 35 0.531532 CTCCTATGCAGCGGTTCAGG 60.532 60.000 0.00 0.00 0.00 3.86
35 36 0.531532 CCTCCTATGCAGCGGTTCAG 60.532 60.000 0.00 0.00 0.00 3.02
36 37 1.522092 CCTCCTATGCAGCGGTTCA 59.478 57.895 0.00 0.00 0.00 3.18
37 38 1.227674 CCCTCCTATGCAGCGGTTC 60.228 63.158 0.00 0.00 0.00 3.62
38 39 1.689233 TCCCTCCTATGCAGCGGTT 60.689 57.895 0.00 0.00 0.00 4.44
39 40 2.041922 TCCCTCCTATGCAGCGGT 60.042 61.111 0.00 0.00 0.00 5.68
40 41 2.739784 CTCCCTCCTATGCAGCGG 59.260 66.667 0.00 0.00 0.00 5.52
41 42 2.030262 GCTCCCTCCTATGCAGCG 59.970 66.667 0.00 0.00 0.00 5.18
42 43 0.110104 ATTGCTCCCTCCTATGCAGC 59.890 55.000 0.00 0.00 36.75 5.25
43 44 1.419012 TCATTGCTCCCTCCTATGCAG 59.581 52.381 0.00 0.00 36.75 4.41
44 45 1.510492 TCATTGCTCCCTCCTATGCA 58.490 50.000 0.00 0.00 0.00 3.96
45 46 2.502295 CTTCATTGCTCCCTCCTATGC 58.498 52.381 0.00 0.00 0.00 3.14
46 47 2.707791 TCCTTCATTGCTCCCTCCTATG 59.292 50.000 0.00 0.00 0.00 2.23
47 48 3.066208 TCCTTCATTGCTCCCTCCTAT 57.934 47.619 0.00 0.00 0.00 2.57
48 49 2.568546 TCCTTCATTGCTCCCTCCTA 57.431 50.000 0.00 0.00 0.00 2.94
49 50 1.563410 CTTCCTTCATTGCTCCCTCCT 59.437 52.381 0.00 0.00 0.00 3.69
50 51 1.409381 CCTTCCTTCATTGCTCCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
51 52 1.561542 TCCTTCCTTCATTGCTCCCTC 59.438 52.381 0.00 0.00 0.00 4.30
52 53 1.563410 CTCCTTCCTTCATTGCTCCCT 59.437 52.381 0.00 0.00 0.00 4.20
53 54 2.021208 GCTCCTTCCTTCATTGCTCCC 61.021 57.143 0.00 0.00 0.00 4.30
54 55 1.387539 GCTCCTTCCTTCATTGCTCC 58.612 55.000 0.00 0.00 0.00 4.70
55 56 1.012841 CGCTCCTTCCTTCATTGCTC 58.987 55.000 0.00 0.00 0.00 4.26
56 57 1.028868 GCGCTCCTTCCTTCATTGCT 61.029 55.000 0.00 0.00 0.00 3.91
57 58 1.431036 GCGCTCCTTCCTTCATTGC 59.569 57.895 0.00 0.00 0.00 3.56
58 59 1.379642 GGGCGCTCCTTCCTTCATTG 61.380 60.000 7.64 0.00 0.00 2.82
59 60 1.077429 GGGCGCTCCTTCCTTCATT 60.077 57.895 7.64 0.00 0.00 2.57
60 61 2.592308 GGGCGCTCCTTCCTTCAT 59.408 61.111 7.64 0.00 0.00 2.57
61 62 4.082523 CGGGCGCTCCTTCCTTCA 62.083 66.667 7.64 0.00 0.00 3.02
62 63 3.607370 AACGGGCGCTCCTTCCTTC 62.607 63.158 7.64 0.00 0.00 3.46
63 64 3.192103 AAACGGGCGCTCCTTCCTT 62.192 57.895 7.64 0.00 0.00 3.36
64 65 3.637273 AAACGGGCGCTCCTTCCT 61.637 61.111 7.64 0.00 0.00 3.36
65 66 3.431725 CAAACGGGCGCTCCTTCC 61.432 66.667 7.64 0.00 0.00 3.46
66 67 3.431725 CCAAACGGGCGCTCCTTC 61.432 66.667 7.64 0.00 0.00 3.46
70 71 4.388499 TCTCCCAAACGGGCGCTC 62.388 66.667 7.64 0.06 44.35 5.03
71 72 4.699522 GTCTCCCAAACGGGCGCT 62.700 66.667 7.64 0.00 44.35 5.92
72 73 4.699522 AGTCTCCCAAACGGGCGC 62.700 66.667 0.00 0.00 44.35 6.53
73 74 2.434359 GAGTCTCCCAAACGGGCG 60.434 66.667 0.00 0.00 44.35 6.13
74 75 2.046217 GGAGTCTCCCAAACGGGC 60.046 66.667 7.78 0.00 44.35 6.13
92 93 2.876368 CTAAGAGCGTGCCCCCTTGG 62.876 65.000 0.00 0.00 37.09 3.61
93 94 1.450312 CTAAGAGCGTGCCCCCTTG 60.450 63.158 0.00 0.00 0.00 3.61
94 95 2.990479 CTAAGAGCGTGCCCCCTT 59.010 61.111 0.00 0.00 0.00 3.95
95 96 3.787001 GCTAAGAGCGTGCCCCCT 61.787 66.667 0.00 0.00 0.00 4.79
104 105 3.198489 GTGGCGGCAGCTAAGAGC 61.198 66.667 13.91 0.00 44.37 4.09
105 106 2.887568 CGTGGCGGCAGCTAAGAG 60.888 66.667 13.91 0.00 44.37 2.85
106 107 3.691342 ACGTGGCGGCAGCTAAGA 61.691 61.111 13.91 0.00 44.37 2.10
107 108 3.490759 CACGTGGCGGCAGCTAAG 61.491 66.667 13.91 7.77 44.37 2.18
108 109 4.308458 ACACGTGGCGGCAGCTAA 62.308 61.111 21.57 0.00 44.37 3.09
109 110 4.735132 GACACGTGGCGGCAGCTA 62.735 66.667 21.57 0.00 44.37 3.32
129 130 2.282462 AAAGGAAGCGCCCACAGG 60.282 61.111 2.29 0.00 37.37 4.00
130 131 1.172180 TTCAAAGGAAGCGCCCACAG 61.172 55.000 2.29 0.00 37.37 3.66
131 132 0.539438 ATTCAAAGGAAGCGCCCACA 60.539 50.000 2.29 0.00 36.25 4.17
132 133 0.603065 AATTCAAAGGAAGCGCCCAC 59.397 50.000 2.29 0.00 36.25 4.61
133 134 2.208132 TAATTCAAAGGAAGCGCCCA 57.792 45.000 2.29 0.00 36.25 5.36
134 135 3.801114 AATAATTCAAAGGAAGCGCCC 57.199 42.857 2.29 0.00 36.25 6.13
135 136 6.034577 GTGTAAAATAATTCAAAGGAAGCGCC 59.965 38.462 2.29 0.00 36.25 6.53
136 137 6.237201 CGTGTAAAATAATTCAAAGGAAGCGC 60.237 38.462 0.00 0.00 36.25 5.92
137 138 6.237201 GCGTGTAAAATAATTCAAAGGAAGCG 60.237 38.462 0.00 0.00 36.25 4.68
138 139 6.584563 TGCGTGTAAAATAATTCAAAGGAAGC 59.415 34.615 0.00 0.00 36.25 3.86
139 140 8.687824 ATGCGTGTAAAATAATTCAAAGGAAG 57.312 30.769 0.00 0.00 36.25 3.46
140 141 9.482627 AAATGCGTGTAAAATAATTCAAAGGAA 57.517 25.926 0.00 0.00 37.45 3.36
141 142 9.482627 AAAATGCGTGTAAAATAATTCAAAGGA 57.517 25.926 0.00 0.00 0.00 3.36
142 143 9.739786 GAAAATGCGTGTAAAATAATTCAAAGG 57.260 29.630 0.00 0.00 0.00 3.11
145 146 8.431593 GCAGAAAATGCGTGTAAAATAATTCAA 58.568 29.630 0.00 0.00 46.99 2.69
146 147 7.948137 GCAGAAAATGCGTGTAAAATAATTCA 58.052 30.769 0.00 0.00 46.99 2.57
162 163 4.952335 ACCCCATCTAGAAAGCAGAAAATG 59.048 41.667 0.00 0.00 0.00 2.32
163 164 5.198602 ACCCCATCTAGAAAGCAGAAAAT 57.801 39.130 0.00 0.00 0.00 1.82
164 165 4.657814 ACCCCATCTAGAAAGCAGAAAA 57.342 40.909 0.00 0.00 0.00 2.29
165 166 4.657814 AACCCCATCTAGAAAGCAGAAA 57.342 40.909 0.00 0.00 0.00 2.52
166 167 4.657814 AAACCCCATCTAGAAAGCAGAA 57.342 40.909 0.00 0.00 0.00 3.02
167 168 4.657814 AAAACCCCATCTAGAAAGCAGA 57.342 40.909 0.00 0.00 0.00 4.26
168 169 4.142600 CGAAAAACCCCATCTAGAAAGCAG 60.143 45.833 0.00 0.00 0.00 4.24
169 170 3.756434 CGAAAAACCCCATCTAGAAAGCA 59.244 43.478 0.00 0.00 0.00 3.91
170 171 3.128764 CCGAAAAACCCCATCTAGAAAGC 59.871 47.826 0.00 0.00 0.00 3.51
171 172 3.128764 GCCGAAAAACCCCATCTAGAAAG 59.871 47.826 0.00 0.00 0.00 2.62
172 173 3.086282 GCCGAAAAACCCCATCTAGAAA 58.914 45.455 0.00 0.00 0.00 2.52
173 174 2.307686 AGCCGAAAAACCCCATCTAGAA 59.692 45.455 0.00 0.00 0.00 2.10
174 175 1.913419 AGCCGAAAAACCCCATCTAGA 59.087 47.619 0.00 0.00 0.00 2.43
175 176 2.420058 AGCCGAAAAACCCCATCTAG 57.580 50.000 0.00 0.00 0.00 2.43
176 177 2.891191 AAGCCGAAAAACCCCATCTA 57.109 45.000 0.00 0.00 0.00 1.98
177 178 2.009681 AAAGCCGAAAAACCCCATCT 57.990 45.000 0.00 0.00 0.00 2.90
178 179 2.683968 GAAAAGCCGAAAAACCCCATC 58.316 47.619 0.00 0.00 0.00 3.51
179 180 1.000394 CGAAAAGCCGAAAAACCCCAT 60.000 47.619 0.00 0.00 0.00 4.00
180 181 0.386113 CGAAAAGCCGAAAAACCCCA 59.614 50.000 0.00 0.00 0.00 4.96
181 182 0.319211 CCGAAAAGCCGAAAAACCCC 60.319 55.000 0.00 0.00 0.00 4.95
182 183 0.386476 ACCGAAAAGCCGAAAAACCC 59.614 50.000 0.00 0.00 0.00 4.11
183 184 2.212869 AACCGAAAAGCCGAAAAACC 57.787 45.000 0.00 0.00 0.00 3.27
184 185 3.000523 GGAAAACCGAAAAGCCGAAAAAC 59.999 43.478 0.00 0.00 0.00 2.43
185 186 3.188492 GGAAAACCGAAAAGCCGAAAAA 58.812 40.909 0.00 0.00 0.00 1.94
186 187 2.165845 TGGAAAACCGAAAAGCCGAAAA 59.834 40.909 0.00 0.00 0.00 2.29
187 188 1.749634 TGGAAAACCGAAAAGCCGAAA 59.250 42.857 0.00 0.00 0.00 3.46
188 189 1.065851 GTGGAAAACCGAAAAGCCGAA 59.934 47.619 0.00 0.00 0.00 4.30
189 190 0.664224 GTGGAAAACCGAAAAGCCGA 59.336 50.000 0.00 0.00 0.00 5.54
190 191 0.666374 AGTGGAAAACCGAAAAGCCG 59.334 50.000 0.00 0.00 0.00 5.52
191 192 1.269569 CCAGTGGAAAACCGAAAAGCC 60.270 52.381 1.68 0.00 0.00 4.35
192 193 1.407618 ACCAGTGGAAAACCGAAAAGC 59.592 47.619 18.40 0.00 0.00 3.51
193 194 2.949644 AGACCAGTGGAAAACCGAAAAG 59.050 45.455 18.40 0.00 0.00 2.27
194 195 3.007473 AGACCAGTGGAAAACCGAAAA 57.993 42.857 18.40 0.00 0.00 2.29
195 196 2.721425 AGACCAGTGGAAAACCGAAA 57.279 45.000 18.40 0.00 0.00 3.46
196 197 2.721425 AAGACCAGTGGAAAACCGAA 57.279 45.000 18.40 0.00 0.00 4.30
197 198 2.171870 AGAAAGACCAGTGGAAAACCGA 59.828 45.455 18.40 0.00 0.00 4.69
198 199 2.572290 AGAAAGACCAGTGGAAAACCG 58.428 47.619 18.40 0.00 0.00 4.44
199 200 4.023107 GCTAAGAAAGACCAGTGGAAAACC 60.023 45.833 18.40 1.78 0.00 3.27
200 201 4.822350 AGCTAAGAAAGACCAGTGGAAAAC 59.178 41.667 18.40 4.30 0.00 2.43
201 202 5.048846 AGCTAAGAAAGACCAGTGGAAAA 57.951 39.130 18.40 0.00 0.00 2.29
202 203 4.348168 AGAGCTAAGAAAGACCAGTGGAAA 59.652 41.667 18.40 0.00 0.00 3.13
203 204 3.904339 AGAGCTAAGAAAGACCAGTGGAA 59.096 43.478 18.40 0.00 0.00 3.53
204 205 3.511477 AGAGCTAAGAAAGACCAGTGGA 58.489 45.455 18.40 0.00 0.00 4.02
205 206 3.971245 AGAGCTAAGAAAGACCAGTGG 57.029 47.619 7.91 7.91 0.00 4.00
206 207 3.999663 CCAAGAGCTAAGAAAGACCAGTG 59.000 47.826 0.00 0.00 0.00 3.66
207 208 3.904339 TCCAAGAGCTAAGAAAGACCAGT 59.096 43.478 0.00 0.00 0.00 4.00
208 209 4.543590 TCCAAGAGCTAAGAAAGACCAG 57.456 45.455 0.00 0.00 0.00 4.00
209 210 4.974645 TTCCAAGAGCTAAGAAAGACCA 57.025 40.909 0.00 0.00 0.00 4.02
210 211 6.635030 TTTTTCCAAGAGCTAAGAAAGACC 57.365 37.500 0.00 0.00 30.49 3.85
242 243 9.487790 AATTTTGTGACTCTTGTGAAAGAAAAA 57.512 25.926 0.00 0.00 0.00 1.94
243 244 8.924691 CAATTTTGTGACTCTTGTGAAAGAAAA 58.075 29.630 0.00 0.00 0.00 2.29
244 245 8.087750 ACAATTTTGTGACTCTTGTGAAAGAAA 58.912 29.630 0.00 0.00 40.49 2.52
245 246 7.601856 ACAATTTTGTGACTCTTGTGAAAGAA 58.398 30.769 0.00 0.00 40.49 2.52
246 247 7.156876 ACAATTTTGTGACTCTTGTGAAAGA 57.843 32.000 0.00 0.00 40.49 2.52
247 248 7.816945 AACAATTTTGTGACTCTTGTGAAAG 57.183 32.000 0.00 0.00 41.31 2.62
248 249 8.600449 AAAACAATTTTGTGACTCTTGTGAAA 57.400 26.923 0.00 0.00 41.31 2.69
249 250 7.061673 CGAAAACAATTTTGTGACTCTTGTGAA 59.938 33.333 0.00 0.00 41.31 3.18
250 251 6.526325 CGAAAACAATTTTGTGACTCTTGTGA 59.474 34.615 0.00 0.00 41.31 3.58
251 252 6.307800 ACGAAAACAATTTTGTGACTCTTGTG 59.692 34.615 0.00 0.00 40.81 3.33
252 253 6.386654 ACGAAAACAATTTTGTGACTCTTGT 58.613 32.000 0.00 0.00 40.81 3.16
253 254 6.869421 ACGAAAACAATTTTGTGACTCTTG 57.131 33.333 0.00 0.00 40.81 3.02
261 262 4.142271 TGCCTCTCACGAAAACAATTTTGT 60.142 37.500 0.00 0.00 42.66 2.83
262 263 4.358851 TGCCTCTCACGAAAACAATTTTG 58.641 39.130 0.00 0.00 36.22 2.44
263 264 4.647424 TGCCTCTCACGAAAACAATTTT 57.353 36.364 0.00 0.00 35.12 1.82
264 265 4.278170 TCATGCCTCTCACGAAAACAATTT 59.722 37.500 0.00 0.00 0.00 1.82
265 266 3.820467 TCATGCCTCTCACGAAAACAATT 59.180 39.130 0.00 0.00 0.00 2.32
266 267 3.189287 GTCATGCCTCTCACGAAAACAAT 59.811 43.478 0.00 0.00 0.00 2.71
267 268 2.548057 GTCATGCCTCTCACGAAAACAA 59.452 45.455 0.00 0.00 0.00 2.83
268 269 2.143122 GTCATGCCTCTCACGAAAACA 58.857 47.619 0.00 0.00 0.00 2.83
269 270 1.464997 GGTCATGCCTCTCACGAAAAC 59.535 52.381 0.00 0.00 0.00 2.43
270 271 1.808411 GGTCATGCCTCTCACGAAAA 58.192 50.000 0.00 0.00 0.00 2.29
271 272 0.389817 CGGTCATGCCTCTCACGAAA 60.390 55.000 0.00 0.00 34.25 3.46
272 273 1.215382 CGGTCATGCCTCTCACGAA 59.785 57.895 0.00 0.00 34.25 3.85
273 274 1.977009 ACGGTCATGCCTCTCACGA 60.977 57.895 0.00 0.00 34.25 4.35
274 275 1.807165 CACGGTCATGCCTCTCACG 60.807 63.158 4.92 0.00 34.25 4.35
275 276 2.103042 GCACGGTCATGCCTCTCAC 61.103 63.158 4.92 0.00 39.86 3.51
276 277 2.265739 GCACGGTCATGCCTCTCA 59.734 61.111 4.92 0.00 39.86 3.27
282 283 2.835701 TTCGAGAGGCACGGTCATGC 62.836 60.000 0.00 0.00 45.34 4.06
283 284 0.389817 TTTCGAGAGGCACGGTCATG 60.390 55.000 0.00 0.00 0.00 3.07
284 285 0.320374 TTTTCGAGAGGCACGGTCAT 59.680 50.000 0.00 0.00 0.00 3.06
285 286 0.599204 GTTTTCGAGAGGCACGGTCA 60.599 55.000 0.00 0.00 0.00 4.02
286 287 2.151295 GTTTTCGAGAGGCACGGTC 58.849 57.895 0.00 0.00 0.00 4.79
287 288 4.355925 GTTTTCGAGAGGCACGGT 57.644 55.556 0.00 0.00 0.00 4.83
329 330 1.480219 CGATCGGTCGTGCCTTTAGC 61.480 60.000 10.62 0.00 42.78 3.09
330 331 2.578369 CGATCGGTCGTGCCTTTAG 58.422 57.895 10.62 0.00 42.78 1.85
331 332 4.798288 CGATCGGTCGTGCCTTTA 57.202 55.556 10.62 0.00 42.78 1.85
340 341 6.635239 TGTTTTCTTTTCATTTTCGATCGGTC 59.365 34.615 16.41 0.00 0.00 4.79
341 342 6.416750 GTGTTTTCTTTTCATTTTCGATCGGT 59.583 34.615 16.41 0.00 0.00 4.69
342 343 6.397480 CGTGTTTTCTTTTCATTTTCGATCGG 60.397 38.462 16.41 0.00 0.00 4.18
343 344 6.140108 ACGTGTTTTCTTTTCATTTTCGATCG 59.860 34.615 9.36 9.36 0.00 3.69
344 345 7.376530 ACGTGTTTTCTTTTCATTTTCGATC 57.623 32.000 0.00 0.00 0.00 3.69
345 346 7.749539 AACGTGTTTTCTTTTCATTTTCGAT 57.250 28.000 0.00 0.00 0.00 3.59
346 347 7.569677 AAACGTGTTTTCTTTTCATTTTCGA 57.430 28.000 0.00 0.00 0.00 3.71
347 348 7.840081 GAAACGTGTTTTCTTTTCATTTTCG 57.160 32.000 0.00 0.00 40.60 3.46
376 377 2.218603 GTGCCTCTCACGGAAGAAAAA 58.781 47.619 0.00 0.00 35.76 1.94
377 378 1.878953 GTGCCTCTCACGGAAGAAAA 58.121 50.000 0.00 0.00 35.76 2.29
378 379 3.606886 GTGCCTCTCACGGAAGAAA 57.393 52.632 0.00 0.00 35.76 2.52
386 387 2.352127 GGAGCAAATTTGTGCCTCTCAC 60.352 50.000 19.03 7.47 46.14 3.51
387 388 1.888512 GGAGCAAATTTGTGCCTCTCA 59.111 47.619 19.03 0.00 46.14 3.27
388 389 1.135575 CGGAGCAAATTTGTGCCTCTC 60.136 52.381 19.03 15.03 46.14 3.20
389 390 0.883833 CGGAGCAAATTTGTGCCTCT 59.116 50.000 19.03 7.44 46.14 3.69
390 391 0.109132 CCGGAGCAAATTTGTGCCTC 60.109 55.000 19.03 15.66 46.14 4.70
391 392 0.827507 ACCGGAGCAAATTTGTGCCT 60.828 50.000 19.03 8.15 46.14 4.75
392 393 0.033366 AACCGGAGCAAATTTGTGCC 59.967 50.000 19.03 17.70 46.14 5.01
393 394 1.526464 CAAACCGGAGCAAATTTGTGC 59.474 47.619 19.03 7.03 45.28 4.57
394 395 2.134346 CCAAACCGGAGCAAATTTGTG 58.866 47.619 19.03 7.05 36.56 3.33
395 396 1.760029 ACCAAACCGGAGCAAATTTGT 59.240 42.857 19.03 6.52 38.63 2.83
396 397 2.524569 ACCAAACCGGAGCAAATTTG 57.475 45.000 9.46 14.03 38.63 2.32
397 398 3.552132 AAACCAAACCGGAGCAAATTT 57.448 38.095 9.46 0.00 38.63 1.82
398 399 3.552132 AAAACCAAACCGGAGCAAATT 57.448 38.095 9.46 0.00 38.63 1.82
399 400 3.552132 AAAAACCAAACCGGAGCAAAT 57.448 38.095 9.46 0.00 38.63 2.32
426 427 8.960591 CCATGTTAATAGGTGACAAATCTTTCT 58.039 33.333 0.00 0.00 0.00 2.52
427 428 8.190784 CCCATGTTAATAGGTGACAAATCTTTC 58.809 37.037 0.00 0.00 0.00 2.62
428 429 7.893302 TCCCATGTTAATAGGTGACAAATCTTT 59.107 33.333 0.00 0.00 0.00 2.52
429 430 7.410174 TCCCATGTTAATAGGTGACAAATCTT 58.590 34.615 0.00 0.00 0.00 2.40
430 431 6.969043 TCCCATGTTAATAGGTGACAAATCT 58.031 36.000 0.00 0.00 0.00 2.40
431 432 7.823745 ATCCCATGTTAATAGGTGACAAATC 57.176 36.000 0.00 0.00 0.00 2.17
432 433 8.608185 AAATCCCATGTTAATAGGTGACAAAT 57.392 30.769 0.00 0.00 0.00 2.32
433 434 9.184523 CTAAATCCCATGTTAATAGGTGACAAA 57.815 33.333 0.00 0.00 0.00 2.83
434 435 8.333235 ACTAAATCCCATGTTAATAGGTGACAA 58.667 33.333 0.00 0.00 0.00 3.18
435 436 7.867921 ACTAAATCCCATGTTAATAGGTGACA 58.132 34.615 0.00 0.00 0.00 3.58
436 437 8.747538 AACTAAATCCCATGTTAATAGGTGAC 57.252 34.615 0.00 0.00 0.00 3.67
437 438 9.762381 AAAACTAAATCCCATGTTAATAGGTGA 57.238 29.630 0.00 0.00 0.00 4.02
438 439 9.801873 CAAAACTAAATCCCATGTTAATAGGTG 57.198 33.333 0.00 0.00 0.00 4.00
439 440 9.762381 TCAAAACTAAATCCCATGTTAATAGGT 57.238 29.630 0.00 0.00 0.00 3.08
447 448 9.492973 CAAGATTTTCAAAACTAAATCCCATGT 57.507 29.630 0.00 0.00 33.40 3.21
448 449 9.709495 TCAAGATTTTCAAAACTAAATCCCATG 57.291 29.630 0.00 0.00 33.40 3.66
450 451 9.762933 CTTCAAGATTTTCAAAACTAAATCCCA 57.237 29.630 0.00 0.00 33.40 4.37
451 452 9.764363 ACTTCAAGATTTTCAAAACTAAATCCC 57.236 29.630 0.00 0.00 33.40 3.85
455 456 9.801873 CCTCACTTCAAGATTTTCAAAACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
456 457 9.184523 TCCTCACTTCAAGATTTTCAAAACTAA 57.815 29.630 0.00 0.00 0.00 2.24
457 458 8.746052 TCCTCACTTCAAGATTTTCAAAACTA 57.254 30.769 0.00 0.00 0.00 2.24
458 459 7.645058 TCCTCACTTCAAGATTTTCAAAACT 57.355 32.000 0.00 0.00 0.00 2.66
459 460 8.877808 ATTCCTCACTTCAAGATTTTCAAAAC 57.122 30.769 0.00 0.00 0.00 2.43
460 461 8.143835 GGATTCCTCACTTCAAGATTTTCAAAA 58.856 33.333 0.00 0.00 0.00 2.44
461 462 7.287466 TGGATTCCTCACTTCAAGATTTTCAAA 59.713 33.333 3.95 0.00 0.00 2.69
462 463 6.777091 TGGATTCCTCACTTCAAGATTTTCAA 59.223 34.615 3.95 0.00 0.00 2.69
463 464 6.306199 TGGATTCCTCACTTCAAGATTTTCA 58.694 36.000 3.95 0.00 0.00 2.69
464 465 6.824305 TGGATTCCTCACTTCAAGATTTTC 57.176 37.500 3.95 0.00 0.00 2.29
465 466 6.294176 CGTTGGATTCCTCACTTCAAGATTTT 60.294 38.462 3.95 0.00 0.00 1.82
466 467 5.182001 CGTTGGATTCCTCACTTCAAGATTT 59.818 40.000 3.95 0.00 0.00 2.17
467 468 4.697352 CGTTGGATTCCTCACTTCAAGATT 59.303 41.667 3.95 0.00 0.00 2.40
468 469 4.256920 CGTTGGATTCCTCACTTCAAGAT 58.743 43.478 3.95 0.00 0.00 2.40
469 470 3.557054 CCGTTGGATTCCTCACTTCAAGA 60.557 47.826 3.95 0.00 0.00 3.02
470 471 2.744202 CCGTTGGATTCCTCACTTCAAG 59.256 50.000 3.95 0.00 0.00 3.02
471 472 2.105821 ACCGTTGGATTCCTCACTTCAA 59.894 45.455 3.95 0.00 0.00 2.69
472 473 1.697432 ACCGTTGGATTCCTCACTTCA 59.303 47.619 3.95 0.00 0.00 3.02
473 474 2.076863 CACCGTTGGATTCCTCACTTC 58.923 52.381 3.95 0.00 0.00 3.01
474 475 1.697432 TCACCGTTGGATTCCTCACTT 59.303 47.619 3.95 0.00 0.00 3.16
475 476 1.002087 GTCACCGTTGGATTCCTCACT 59.998 52.381 3.95 0.00 0.00 3.41
476 477 1.002087 AGTCACCGTTGGATTCCTCAC 59.998 52.381 3.95 0.14 0.00 3.51
477 478 1.001974 CAGTCACCGTTGGATTCCTCA 59.998 52.381 3.95 0.00 0.00 3.86
478 479 1.002087 ACAGTCACCGTTGGATTCCTC 59.998 52.381 3.95 0.00 0.00 3.71
479 480 1.056660 ACAGTCACCGTTGGATTCCT 58.943 50.000 3.95 0.00 0.00 3.36
480 481 1.892209 AACAGTCACCGTTGGATTCC 58.108 50.000 0.00 0.00 0.00 3.01
481 482 3.982576 AAAACAGTCACCGTTGGATTC 57.017 42.857 0.00 0.00 0.00 2.52
482 483 5.127491 TCTTAAAACAGTCACCGTTGGATT 58.873 37.500 0.00 0.00 0.00 3.01
483 484 4.710324 TCTTAAAACAGTCACCGTTGGAT 58.290 39.130 0.00 0.00 0.00 3.41
484 485 4.139859 TCTTAAAACAGTCACCGTTGGA 57.860 40.909 0.00 0.00 0.00 3.53
485 486 5.432885 AATCTTAAAACAGTCACCGTTGG 57.567 39.130 0.00 0.00 0.00 3.77
486 487 5.685511 CCAAATCTTAAAACAGTCACCGTTG 59.314 40.000 0.00 0.00 0.00 4.10
487 488 5.591067 TCCAAATCTTAAAACAGTCACCGTT 59.409 36.000 0.00 0.00 0.00 4.44
488 489 5.008316 GTCCAAATCTTAAAACAGTCACCGT 59.992 40.000 0.00 0.00 0.00 4.83
489 490 5.008217 TGTCCAAATCTTAAAACAGTCACCG 59.992 40.000 0.00 0.00 0.00 4.94
490 491 6.206498 GTGTCCAAATCTTAAAACAGTCACC 58.794 40.000 0.00 0.00 0.00 4.02
491 492 5.907391 CGTGTCCAAATCTTAAAACAGTCAC 59.093 40.000 0.00 0.00 0.00 3.67
492 493 5.008217 CCGTGTCCAAATCTTAAAACAGTCA 59.992 40.000 0.00 0.00 0.00 3.41
493 494 5.008316 ACCGTGTCCAAATCTTAAAACAGTC 59.992 40.000 0.00 0.00 0.00 3.51
494 495 4.885325 ACCGTGTCCAAATCTTAAAACAGT 59.115 37.500 0.00 0.00 0.00 3.55
495 496 5.432885 ACCGTGTCCAAATCTTAAAACAG 57.567 39.130 0.00 0.00 0.00 3.16
496 497 5.838531 AACCGTGTCCAAATCTTAAAACA 57.161 34.783 0.00 0.00 0.00 2.83
497 498 8.130469 TCTTAAACCGTGTCCAAATCTTAAAAC 58.870 33.333 0.00 0.00 0.00 2.43
498 499 8.223177 TCTTAAACCGTGTCCAAATCTTAAAA 57.777 30.769 0.00 0.00 0.00 1.52
499 500 7.716123 TCTCTTAAACCGTGTCCAAATCTTAAA 59.284 33.333 0.00 0.00 0.00 1.52
500 501 7.218614 TCTCTTAAACCGTGTCCAAATCTTAA 58.781 34.615 0.00 0.00 0.00 1.85
501 502 6.761312 TCTCTTAAACCGTGTCCAAATCTTA 58.239 36.000 0.00 0.00 0.00 2.10
502 503 5.617252 TCTCTTAAACCGTGTCCAAATCTT 58.383 37.500 0.00 0.00 0.00 2.40
503 504 5.223449 TCTCTTAAACCGTGTCCAAATCT 57.777 39.130 0.00 0.00 0.00 2.40
504 505 7.605410 TTATCTCTTAAACCGTGTCCAAATC 57.395 36.000 0.00 0.00 0.00 2.17
505 506 7.989416 TTTATCTCTTAAACCGTGTCCAAAT 57.011 32.000 0.00 0.00 0.00 2.32
506 507 7.282675 TGTTTTATCTCTTAAACCGTGTCCAAA 59.717 33.333 0.00 0.00 34.21 3.28
507 508 6.766944 TGTTTTATCTCTTAAACCGTGTCCAA 59.233 34.615 0.00 0.00 34.21 3.53
508 509 6.289834 TGTTTTATCTCTTAAACCGTGTCCA 58.710 36.000 0.00 0.00 34.21 4.02
509 510 6.790285 TGTTTTATCTCTTAAACCGTGTCC 57.210 37.500 0.00 0.00 34.21 4.02
510 511 9.673454 AAAATGTTTTATCTCTTAAACCGTGTC 57.327 29.630 0.00 0.00 34.21 3.67
511 512 9.458374 CAAAATGTTTTATCTCTTAAACCGTGT 57.542 29.630 0.00 0.00 34.21 4.49
512 513 9.672086 TCAAAATGTTTTATCTCTTAAACCGTG 57.328 29.630 0.00 0.00 34.21 4.94
563 564 3.564053 TGTCGTAACCTGGGAGTTTTT 57.436 42.857 0.00 0.00 0.00 1.94
564 565 3.564053 TTGTCGTAACCTGGGAGTTTT 57.436 42.857 0.00 0.00 0.00 2.43
565 566 3.782656 ATTGTCGTAACCTGGGAGTTT 57.217 42.857 0.00 0.00 0.00 2.66
566 567 3.408634 CAATTGTCGTAACCTGGGAGTT 58.591 45.455 0.00 0.00 0.00 3.01
567 568 2.290071 CCAATTGTCGTAACCTGGGAGT 60.290 50.000 4.43 0.00 0.00 3.85
568 569 2.356135 CCAATTGTCGTAACCTGGGAG 58.644 52.381 4.43 0.00 0.00 4.30
569 570 1.612199 GCCAATTGTCGTAACCTGGGA 60.612 52.381 4.43 0.00 0.00 4.37
570 571 0.808755 GCCAATTGTCGTAACCTGGG 59.191 55.000 4.43 0.00 0.00 4.45
571 572 0.446222 CGCCAATTGTCGTAACCTGG 59.554 55.000 0.00 0.00 0.00 4.45
572 573 1.153353 ACGCCAATTGTCGTAACCTG 58.847 50.000 13.54 0.00 37.14 4.00
573 574 2.288948 TGTACGCCAATTGTCGTAACCT 60.289 45.455 21.79 0.00 41.92 3.50
574 575 2.067766 TGTACGCCAATTGTCGTAACC 58.932 47.619 21.79 12.02 41.92 2.85
575 576 3.666001 CATGTACGCCAATTGTCGTAAC 58.334 45.455 21.79 15.98 41.92 2.50
576 577 2.094575 GCATGTACGCCAATTGTCGTAA 59.905 45.455 21.79 13.12 41.92 3.18
577 578 1.661617 GCATGTACGCCAATTGTCGTA 59.338 47.619 16.99 16.99 39.79 3.43
578 579 0.446222 GCATGTACGCCAATTGTCGT 59.554 50.000 19.18 19.18 42.09 4.34
579 580 0.445829 TGCATGTACGCCAATTGTCG 59.554 50.000 7.43 7.43 0.00 4.35
580 581 1.468520 ACTGCATGTACGCCAATTGTC 59.531 47.619 4.43 0.00 0.00 3.18
581 582 1.468520 GACTGCATGTACGCCAATTGT 59.531 47.619 4.43 0.00 0.00 2.71
582 583 1.202177 GGACTGCATGTACGCCAATTG 60.202 52.381 0.00 0.00 0.00 2.32
583 584 1.094785 GGACTGCATGTACGCCAATT 58.905 50.000 0.00 0.00 0.00 2.32
584 585 1.089481 CGGACTGCATGTACGCCAAT 61.089 55.000 7.78 0.00 46.75 3.16
585 586 1.739929 CGGACTGCATGTACGCCAA 60.740 57.895 7.78 0.00 46.75 4.52
586 587 2.125713 CGGACTGCATGTACGCCA 60.126 61.111 7.78 0.00 46.75 5.69
597 598 4.389576 GCAACAAGCGGCGGACTG 62.390 66.667 9.78 0.00 0.00 3.51
606 607 1.408702 TCTTTCCAGGTTGCAACAAGC 59.591 47.619 29.55 13.55 45.96 4.01
607 608 3.553508 CCATCTTTCCAGGTTGCAACAAG 60.554 47.826 29.55 22.32 0.00 3.16
608 609 2.364970 CCATCTTTCCAGGTTGCAACAA 59.635 45.455 29.55 13.45 0.00 2.83
609 610 1.962807 CCATCTTTCCAGGTTGCAACA 59.037 47.619 29.55 7.60 0.00 3.33
610 611 1.273327 CCCATCTTTCCAGGTTGCAAC 59.727 52.381 21.59 21.59 0.00 4.17
611 612 1.146774 TCCCATCTTTCCAGGTTGCAA 59.853 47.619 0.00 0.00 0.00 4.08
612 613 0.776810 TCCCATCTTTCCAGGTTGCA 59.223 50.000 0.00 0.00 0.00 4.08
613 614 1.272147 ACTCCCATCTTTCCAGGTTGC 60.272 52.381 0.00 0.00 0.00 4.17
614 615 2.040278 TCACTCCCATCTTTCCAGGTTG 59.960 50.000 0.00 0.00 0.00 3.77
615 616 2.040412 GTCACTCCCATCTTTCCAGGTT 59.960 50.000 0.00 0.00 0.00 3.50
616 617 1.630878 GTCACTCCCATCTTTCCAGGT 59.369 52.381 0.00 0.00 0.00 4.00
617 618 1.912043 AGTCACTCCCATCTTTCCAGG 59.088 52.381 0.00 0.00 0.00 4.45
618 619 3.710209 AAGTCACTCCCATCTTTCCAG 57.290 47.619 0.00 0.00 0.00 3.86
619 620 4.453480 AAAAGTCACTCCCATCTTTCCA 57.547 40.909 0.00 0.00 31.12 3.53
620 621 4.827284 TGAAAAAGTCACTCCCATCTTTCC 59.173 41.667 0.00 0.00 31.12 3.13
621 622 6.391227 TTGAAAAAGTCACTCCCATCTTTC 57.609 37.500 0.00 0.00 35.39 2.62
622 623 6.607198 TCTTTGAAAAAGTCACTCCCATCTTT 59.393 34.615 0.05 0.00 35.39 2.52
623 624 6.129179 TCTTTGAAAAAGTCACTCCCATCTT 58.871 36.000 0.05 0.00 35.39 2.40
624 625 5.694995 TCTTTGAAAAAGTCACTCCCATCT 58.305 37.500 0.05 0.00 35.39 2.90
625 626 6.391227 TTCTTTGAAAAAGTCACTCCCATC 57.609 37.500 0.05 0.00 35.39 3.51
626 627 6.739565 GCATTCTTTGAAAAAGTCACTCCCAT 60.740 38.462 0.05 0.00 35.39 4.00
627 628 5.451798 GCATTCTTTGAAAAAGTCACTCCCA 60.452 40.000 0.05 0.00 35.39 4.37
628 629 4.984785 GCATTCTTTGAAAAAGTCACTCCC 59.015 41.667 0.05 0.00 35.39 4.30
629 630 5.836347 AGCATTCTTTGAAAAAGTCACTCC 58.164 37.500 0.05 0.00 35.39 3.85
630 631 7.761651 AAAGCATTCTTTGAAAAAGTCACTC 57.238 32.000 0.00 0.00 40.77 3.51
631 632 8.552083 AAAAAGCATTCTTTGAAAAAGTCACT 57.448 26.923 0.00 0.00 41.40 3.41
656 657 5.533528 GCACTCCTTGTACCCTTAAGAAAAA 59.466 40.000 3.36 0.00 0.00 1.94
657 658 5.067954 GCACTCCTTGTACCCTTAAGAAAA 58.932 41.667 3.36 0.00 0.00 2.29
658 659 4.349930 AGCACTCCTTGTACCCTTAAGAAA 59.650 41.667 3.36 0.00 0.00 2.52
659 660 3.908103 AGCACTCCTTGTACCCTTAAGAA 59.092 43.478 3.36 0.00 0.00 2.52
660 661 3.514309 GAGCACTCCTTGTACCCTTAAGA 59.486 47.826 3.36 0.00 0.00 2.10
661 662 3.369576 GGAGCACTCCTTGTACCCTTAAG 60.370 52.174 9.54 0.00 46.16 1.85
662 663 2.570302 GGAGCACTCCTTGTACCCTTAA 59.430 50.000 9.54 0.00 46.16 1.85
663 664 2.185387 GGAGCACTCCTTGTACCCTTA 58.815 52.381 9.54 0.00 46.16 2.69
664 665 0.984995 GGAGCACTCCTTGTACCCTT 59.015 55.000 9.54 0.00 46.16 3.95
665 666 2.685202 GGAGCACTCCTTGTACCCT 58.315 57.895 9.54 0.00 46.16 4.34
687 688 4.924305 AAGCAGCACTTCATCTCAAAAA 57.076 36.364 0.00 0.00 30.77 1.94
688 689 6.207221 TGATTAAGCAGCACTTCATCTCAAAA 59.793 34.615 12.27 0.00 39.02 2.44
689 690 5.706833 TGATTAAGCAGCACTTCATCTCAAA 59.293 36.000 12.27 0.00 39.02 2.69
690 691 5.247862 TGATTAAGCAGCACTTCATCTCAA 58.752 37.500 12.27 0.00 39.02 3.02
691 692 4.835678 TGATTAAGCAGCACTTCATCTCA 58.164 39.130 12.27 3.67 39.02 3.27
692 693 4.874966 ACTGATTAAGCAGCACTTCATCTC 59.125 41.667 20.30 0.00 39.02 2.75
693 694 4.634883 CACTGATTAAGCAGCACTTCATCT 59.365 41.667 20.30 0.00 39.02 2.90
694 695 4.633126 TCACTGATTAAGCAGCACTTCATC 59.367 41.667 20.30 6.69 38.82 2.92
695 696 4.582869 TCACTGATTAAGCAGCACTTCAT 58.417 39.130 20.30 0.00 39.97 2.57
696 697 4.006780 TCACTGATTAAGCAGCACTTCA 57.993 40.909 20.30 0.00 39.97 3.02
697 698 5.557891 AATCACTGATTAAGCAGCACTTC 57.442 39.130 20.30 0.00 39.97 3.01
698 699 5.391310 CGAAATCACTGATTAAGCAGCACTT 60.391 40.000 20.30 8.83 42.76 3.16
699 700 4.093998 CGAAATCACTGATTAAGCAGCACT 59.906 41.667 20.30 2.35 39.51 4.40
700 701 4.142816 ACGAAATCACTGATTAAGCAGCAC 60.143 41.667 20.30 5.27 39.51 4.40
701 702 4.002982 ACGAAATCACTGATTAAGCAGCA 58.997 39.130 20.30 7.98 39.51 4.41
702 703 4.142816 ACACGAAATCACTGATTAAGCAGC 60.143 41.667 20.30 2.39 39.51 5.25
703 704 5.319139 CACACGAAATCACTGATTAAGCAG 58.681 41.667 18.88 18.88 41.63 4.24
704 705 4.378356 GCACACGAAATCACTGATTAAGCA 60.378 41.667 4.65 0.00 31.46 3.91
705 706 4.091424 GCACACGAAATCACTGATTAAGC 58.909 43.478 4.65 0.86 31.46 3.09
706 707 5.082059 GTGCACACGAAATCACTGATTAAG 58.918 41.667 13.17 5.07 31.46 1.85
707 708 4.083537 GGTGCACACGAAATCACTGATTAA 60.084 41.667 20.43 0.00 31.46 1.40
708 709 3.435327 GGTGCACACGAAATCACTGATTA 59.565 43.478 20.43 0.00 31.46 1.75
709 710 2.226437 GGTGCACACGAAATCACTGATT 59.774 45.455 20.43 0.00 33.25 2.57
710 711 1.806542 GGTGCACACGAAATCACTGAT 59.193 47.619 20.43 0.00 0.00 2.90
711 712 1.225855 GGTGCACACGAAATCACTGA 58.774 50.000 20.43 0.00 0.00 3.41
712 713 0.238289 GGGTGCACACGAAATCACTG 59.762 55.000 20.43 0.00 0.00 3.66
713 714 0.889186 GGGGTGCACACGAAATCACT 60.889 55.000 20.43 0.00 0.00 3.41
714 715 1.579429 GGGGTGCACACGAAATCAC 59.421 57.895 20.43 0.00 0.00 3.06
715 716 1.963855 CGGGGTGCACACGAAATCA 60.964 57.895 23.52 0.00 0.00 2.57
716 717 1.512156 AACGGGGTGCACACGAAATC 61.512 55.000 31.11 10.71 0.00 2.17
717 718 1.512156 GAACGGGGTGCACACGAAAT 61.512 55.000 31.11 19.58 0.00 2.17
718 719 2.124653 AACGGGGTGCACACGAAA 60.125 55.556 31.11 0.00 0.00 3.46
719 720 2.589442 GAACGGGGTGCACACGAA 60.589 61.111 31.11 0.00 0.00 3.85
720 721 4.953868 CGAACGGGGTGCACACGA 62.954 66.667 31.11 0.00 0.00 4.35
725 726 2.733319 TAATGTGCGAACGGGGTGCA 62.733 55.000 0.00 0.00 36.02 4.57
726 727 1.373590 ATAATGTGCGAACGGGGTGC 61.374 55.000 0.00 0.00 0.00 5.01
727 728 1.091537 AATAATGTGCGAACGGGGTG 58.908 50.000 0.00 0.00 0.00 4.61
728 729 1.091537 CAATAATGTGCGAACGGGGT 58.908 50.000 0.00 0.00 0.00 4.95
729 730 0.380378 CCAATAATGTGCGAACGGGG 59.620 55.000 0.00 0.00 0.00 5.73
730 731 0.380378 CCCAATAATGTGCGAACGGG 59.620 55.000 0.00 0.00 0.00 5.28
731 732 0.248458 GCCCAATAATGTGCGAACGG 60.248 55.000 0.00 0.00 0.00 4.44
737 738 1.342174 CATCCTGGCCCAATAATGTGC 59.658 52.381 0.00 0.00 0.00 4.57
751 752 2.222819 GCTAACTTCGTTTCGCATCCTG 60.223 50.000 0.00 0.00 0.00 3.86
760 761 0.953960 CGGCCTGGCTAACTTCGTTT 60.954 55.000 19.68 0.00 0.00 3.60
763 764 2.100631 CACGGCCTGGCTAACTTCG 61.101 63.158 19.68 14.52 0.00 3.79
772 773 2.983592 GACAAACCCACGGCCTGG 60.984 66.667 12.83 12.83 40.26 4.45
794 795 4.806640 ATCTGGCCTGTTTATTGGTTTG 57.193 40.909 3.32 0.00 0.00 2.93
826 827 0.962489 AACTCTCAGTCGTCACCTGG 59.038 55.000 0.00 0.00 0.00 4.45
832 833 3.859411 ATCCTCAAACTCTCAGTCGTC 57.141 47.619 0.00 0.00 0.00 4.20
881 896 4.881850 CCAGCGTTTGGGTTTTCTATCTAT 59.118 41.667 0.64 0.00 43.75 1.98
882 897 4.258543 CCAGCGTTTGGGTTTTCTATCTA 58.741 43.478 0.64 0.00 43.75 1.98
883 898 3.081804 CCAGCGTTTGGGTTTTCTATCT 58.918 45.455 0.64 0.00 43.75 1.98
884 899 3.487563 CCAGCGTTTGGGTTTTCTATC 57.512 47.619 0.64 0.00 43.75 2.08
946 962 0.988678 CCCCCTCTACTTTCCCCCTG 60.989 65.000 0.00 0.00 0.00 4.45
2094 2110 3.368571 GCAGCACAGTTGGAGGCC 61.369 66.667 0.00 0.00 0.00 5.19
2129 2145 3.274288 GCAGATGGGTTAAACTCCTGAG 58.726 50.000 10.13 0.00 0.00 3.35
2355 2371 4.379290 CGTGCAATTTGGTCATATGTGTGA 60.379 41.667 1.90 0.00 0.00 3.58
2651 2670 3.550233 GCCTCCTTTCGAACAAAACTTCC 60.550 47.826 0.00 0.00 0.00 3.46
2798 2817 2.115427 TCTCCCGTTTATCAGCCATCA 58.885 47.619 0.00 0.00 0.00 3.07
2856 2875 8.851145 GTGTCTCAACATCTATATAAGGTGAGA 58.149 37.037 17.02 17.02 38.78 3.27
2857 2876 8.085296 GGTGTCTCAACATCTATATAAGGTGAG 58.915 40.741 14.12 14.12 38.78 3.51
2875 2894 5.374071 GTTTCTTTTTCCTAGGGTGTCTCA 58.626 41.667 9.46 0.00 0.00 3.27
2887 2906 4.267690 CCAGAGTTTTGCGTTTCTTTTTCC 59.732 41.667 0.00 0.00 0.00 3.13
2895 2914 4.764823 TCCATATTCCAGAGTTTTGCGTTT 59.235 37.500 0.00 0.00 0.00 3.60
2899 2918 6.924111 TCTTTTCCATATTCCAGAGTTTTGC 58.076 36.000 0.00 0.00 0.00 3.68
3230 3306 1.312371 CCGGCCCGAAACACATGAAT 61.312 55.000 3.71 0.00 0.00 2.57
3253 3329 1.305549 CAAATCCCAAGCCCAGCCT 60.306 57.895 0.00 0.00 0.00 4.58
3304 3380 3.866582 CATCCTCCAGGTCGGGCC 61.867 72.222 0.00 0.00 36.34 5.80
3305 3381 4.554036 GCATCCTCCAGGTCGGGC 62.554 72.222 0.00 0.00 36.34 6.13
3306 3382 3.866582 GGCATCCTCCAGGTCGGG 61.867 72.222 0.00 0.00 36.34 5.14
3307 3383 3.866582 GGGCATCCTCCAGGTCGG 61.867 72.222 0.00 0.00 36.34 4.79
3308 3384 3.083349 TGGGCATCCTCCAGGTCG 61.083 66.667 0.00 0.00 36.34 4.79
3309 3385 2.914289 CTGGGCATCCTCCAGGTC 59.086 66.667 2.40 0.00 45.95 3.85
3313 3389 0.623723 GTAAACCTGGGCATCCTCCA 59.376 55.000 0.00 0.00 0.00 3.86
3314 3390 0.919710 AGTAAACCTGGGCATCCTCC 59.080 55.000 0.00 0.00 0.00 4.30
3315 3391 2.026262 TCAAGTAAACCTGGGCATCCTC 60.026 50.000 0.00 0.00 0.00 3.71
3316 3392 1.992557 TCAAGTAAACCTGGGCATCCT 59.007 47.619 0.00 0.00 0.00 3.24
3317 3393 2.507407 TCAAGTAAACCTGGGCATCC 57.493 50.000 0.00 0.00 0.00 3.51
3318 3394 3.193479 CCTTTCAAGTAAACCTGGGCATC 59.807 47.826 0.00 0.00 0.00 3.91
3319 3395 3.165071 CCTTTCAAGTAAACCTGGGCAT 58.835 45.455 0.00 0.00 0.00 4.40
3320 3396 2.593026 CCTTTCAAGTAAACCTGGGCA 58.407 47.619 0.00 0.00 0.00 5.36
3321 3397 1.272490 GCCTTTCAAGTAAACCTGGGC 59.728 52.381 0.00 0.00 30.31 5.36
3322 3398 2.876581 AGCCTTTCAAGTAAACCTGGG 58.123 47.619 0.00 0.00 0.00 4.45
3323 3399 3.005791 CCAAGCCTTTCAAGTAAACCTGG 59.994 47.826 0.00 0.00 0.00 4.45
3324 3400 3.636764 ACCAAGCCTTTCAAGTAAACCTG 59.363 43.478 0.00 0.00 0.00 4.00
3325 3401 3.636764 CACCAAGCCTTTCAAGTAAACCT 59.363 43.478 0.00 0.00 0.00 3.50
3326 3402 3.243737 CCACCAAGCCTTTCAAGTAAACC 60.244 47.826 0.00 0.00 0.00 3.27
3327 3403 3.383505 ACCACCAAGCCTTTCAAGTAAAC 59.616 43.478 0.00 0.00 0.00 2.01
3328 3404 3.637769 ACCACCAAGCCTTTCAAGTAAA 58.362 40.909 0.00 0.00 0.00 2.01
3344 3420 4.514401 CCAAGACTATACTTCCAACCACC 58.486 47.826 0.00 0.00 0.00 4.61
3346 3422 3.844211 AGCCAAGACTATACTTCCAACCA 59.156 43.478 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.