Multiple sequence alignment - TraesCS2A01G378800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2A01G378800
chr2A
100.000
2531
0
0
1
2531
621516971
621514441
0.000000e+00
4674
1
TraesCS2A01G378800
chr2D
90.102
1859
102
26
1
1821
478697786
478699600
0.000000e+00
2338
2
TraesCS2A01G378800
chr2B
92.806
1126
57
8
641
1758
561259747
561258638
0.000000e+00
1609
3
TraesCS2A01G378800
chr2B
88.336
643
43
7
3
617
561260382
561259744
0.000000e+00
743
4
TraesCS2A01G378800
chr4D
88.806
536
52
7
1997
2531
495347361
495346833
0.000000e+00
651
5
TraesCS2A01G378800
chr7D
89.494
514
46
8
2022
2531
529829903
529829394
0.000000e+00
643
6
TraesCS2A01G378800
chr7D
88.224
518
53
5
2020
2531
12601076
12600561
1.660000e-171
612
7
TraesCS2A01G378800
chr7D
88.304
513
49
8
2022
2531
236814227
236813723
2.790000e-169
604
8
TraesCS2A01G378800
chr7D
87.938
514
59
3
2020
2531
567606752
567606240
1.000000e-168
603
9
TraesCS2A01G378800
chr6D
87.570
539
52
10
1997
2531
319356324
319356851
5.990000e-171
610
10
TraesCS2A01G378800
chr1D
87.061
541
58
7
1997
2531
49886074
49885540
3.600000e-168
601
11
TraesCS2A01G378800
chr1D
86.667
540
62
8
1997
2531
420371421
420370887
7.800000e-165
590
12
TraesCS2A01G378800
chr1A
86.606
545
60
9
1994
2531
568152980
568153518
7.800000e-165
590
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2A01G378800
chr2A
621514441
621516971
2530
True
4674
4674
100.000
1
2531
1
chr2A.!!$R1
2530
1
TraesCS2A01G378800
chr2D
478697786
478699600
1814
False
2338
2338
90.102
1
1821
1
chr2D.!!$F1
1820
2
TraesCS2A01G378800
chr2B
561258638
561260382
1744
True
1176
1609
90.571
3
1758
2
chr2B.!!$R1
1755
3
TraesCS2A01G378800
chr4D
495346833
495347361
528
True
651
651
88.806
1997
2531
1
chr4D.!!$R1
534
4
TraesCS2A01G378800
chr7D
529829394
529829903
509
True
643
643
89.494
2022
2531
1
chr7D.!!$R3
509
5
TraesCS2A01G378800
chr7D
12600561
12601076
515
True
612
612
88.224
2020
2531
1
chr7D.!!$R1
511
6
TraesCS2A01G378800
chr7D
236813723
236814227
504
True
604
604
88.304
2022
2531
1
chr7D.!!$R2
509
7
TraesCS2A01G378800
chr7D
567606240
567606752
512
True
603
603
87.938
2020
2531
1
chr7D.!!$R4
511
8
TraesCS2A01G378800
chr6D
319356324
319356851
527
False
610
610
87.570
1997
2531
1
chr6D.!!$F1
534
9
TraesCS2A01G378800
chr1D
49885540
49886074
534
True
601
601
87.061
1997
2531
1
chr1D.!!$R1
534
10
TraesCS2A01G378800
chr1D
420370887
420371421
534
True
590
590
86.667
1997
2531
1
chr1D.!!$R2
534
11
TraesCS2A01G378800
chr1A
568152980
568153518
538
False
590
590
86.606
1994
2531
1
chr1A.!!$F1
537
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
680
709
0.254178
AGCTGGAATGCCGTCTTGAT
59.746
50.0
0.0
0.0
36.79
2.57
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1915
1962
0.037697
CGACACCGGTGAGAAATGGA
60.038
55.0
40.21
0.0
0.0
3.41
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
29
30
3.796178
TCTTCAAACAACATTCTTTGCGC
59.204
39.130
0.00
0.00
0.00
6.09
113
114
4.421479
AAGTGCGCTCTCGTCCGG
62.421
66.667
13.07
0.00
38.14
5.14
134
138
3.304190
GGTACAAACTTACAACCCGCAAG
60.304
47.826
0.00
0.00
0.00
4.01
139
143
0.889186
CTTACAACCCGCAAGCCACT
60.889
55.000
0.00
0.00
0.00
4.00
160
164
3.870633
ACTCCTCCAGAATTACACGAC
57.129
47.619
0.00
0.00
0.00
4.34
201
205
2.182825
CAACGCGTAATCTAGCTTCGT
58.817
47.619
14.46
0.00
0.00
3.85
324
329
1.446272
CCGTTCTCCAGCGTCTTCC
60.446
63.158
0.00
0.00
0.00
3.46
398
427
5.901853
TGGGACATGCATGGGATTATTTTAA
59.098
36.000
29.41
0.98
0.00
1.52
400
429
7.072202
TGGGACATGCATGGGATTATTTTAATT
59.928
33.333
29.41
3.99
0.00
1.40
408
437
8.764287
GCATGGGATTATTTTAATTTTTCTCGG
58.236
33.333
0.00
0.00
0.00
4.63
409
438
8.764287
CATGGGATTATTTTAATTTTTCTCGGC
58.236
33.333
0.00
0.00
0.00
5.54
410
439
6.975772
TGGGATTATTTTAATTTTTCTCGGCG
59.024
34.615
0.00
0.00
0.00
6.46
457
486
4.519540
ACTGACAAGTGTGTTTTGCTTT
57.480
36.364
0.00
0.00
38.41
3.51
572
601
5.184096
TCTCTGTTCTGTTCGCTTAATCTCT
59.816
40.000
0.00
0.00
0.00
3.10
579
608
7.757097
TCTGTTCGCTTAATCTCTGTAATTC
57.243
36.000
0.00
0.00
0.00
2.17
613
642
6.240894
TCACTTCTAGAAACAGCATCCATTT
58.759
36.000
6.63
0.00
0.00
2.32
614
643
6.372659
TCACTTCTAGAAACAGCATCCATTTC
59.627
38.462
6.63
0.00
33.40
2.17
615
644
6.373774
CACTTCTAGAAACAGCATCCATTTCT
59.626
38.462
6.63
4.11
43.39
2.52
616
645
6.597280
ACTTCTAGAAACAGCATCCATTTCTC
59.403
38.462
6.63
0.00
40.85
2.87
617
646
6.305272
TCTAGAAACAGCATCCATTTCTCT
57.695
37.500
1.92
0.00
40.85
3.10
618
647
6.715280
TCTAGAAACAGCATCCATTTCTCTT
58.285
36.000
1.92
0.00
40.85
2.85
619
648
7.851228
TCTAGAAACAGCATCCATTTCTCTTA
58.149
34.615
1.92
0.00
40.85
2.10
620
649
8.489489
TCTAGAAACAGCATCCATTTCTCTTAT
58.511
33.333
1.92
0.00
40.85
1.73
621
650
7.330900
AGAAACAGCATCCATTTCTCTTATG
57.669
36.000
0.00
0.00
38.04
1.90
622
651
6.888632
AGAAACAGCATCCATTTCTCTTATGT
59.111
34.615
0.00
0.00
38.04
2.29
623
652
7.395489
AGAAACAGCATCCATTTCTCTTATGTT
59.605
33.333
0.00
0.00
38.04
2.71
624
653
7.472334
AACAGCATCCATTTCTCTTATGTTT
57.528
32.000
0.00
0.00
0.00
2.83
625
654
7.472334
ACAGCATCCATTTCTCTTATGTTTT
57.528
32.000
0.00
0.00
0.00
2.43
626
655
7.542025
ACAGCATCCATTTCTCTTATGTTTTC
58.458
34.615
0.00
0.00
0.00
2.29
627
656
7.395489
ACAGCATCCATTTCTCTTATGTTTTCT
59.605
33.333
0.00
0.00
0.00
2.52
628
657
7.914346
CAGCATCCATTTCTCTTATGTTTTCTC
59.086
37.037
0.00
0.00
0.00
2.87
629
658
6.909357
GCATCCATTTCTCTTATGTTTTCTCG
59.091
38.462
0.00
0.00
0.00
4.04
630
659
7.414540
GCATCCATTTCTCTTATGTTTTCTCGT
60.415
37.037
0.00
0.00
0.00
4.18
631
660
7.596749
TCCATTTCTCTTATGTTTTCTCGTC
57.403
36.000
0.00
0.00
0.00
4.20
632
661
6.310467
TCCATTTCTCTTATGTTTTCTCGTCG
59.690
38.462
0.00
0.00
0.00
5.12
633
662
6.090898
CCATTTCTCTTATGTTTTCTCGTCGT
59.909
38.462
0.00
0.00
0.00
4.34
634
663
6.686130
TTTCTCTTATGTTTTCTCGTCGTC
57.314
37.500
0.00
0.00
0.00
4.20
635
664
5.624344
TCTCTTATGTTTTCTCGTCGTCT
57.376
39.130
0.00
0.00
0.00
4.18
636
665
5.629097
TCTCTTATGTTTTCTCGTCGTCTC
58.371
41.667
0.00
0.00
0.00
3.36
637
666
5.180680
TCTCTTATGTTTTCTCGTCGTCTCA
59.819
40.000
0.00
0.00
0.00
3.27
638
667
5.152097
TCTTATGTTTTCTCGTCGTCTCAC
58.848
41.667
0.00
0.00
0.00
3.51
639
668
2.129823
TGTTTTCTCGTCGTCTCACC
57.870
50.000
0.00
0.00
0.00
4.02
649
678
1.210413
CGTCTCACCTCTCACACCG
59.790
63.158
0.00
0.00
0.00
4.94
671
700
1.005294
CGTGCAAACAGCTGGAATGC
61.005
55.000
24.93
24.93
45.94
3.56
673
702
1.444895
GCAAACAGCTGGAATGCCG
60.445
57.895
22.60
5.55
41.15
5.69
680
709
0.254178
AGCTGGAATGCCGTCTTGAT
59.746
50.000
0.00
0.00
36.79
2.57
720
749
7.365741
TCTTCTTCAGAATTTCAGAAATGCAC
58.634
34.615
15.31
7.89
33.01
4.57
725
754
6.913170
TCAGAATTTCAGAAATGCACCTAAC
58.087
36.000
15.31
0.00
0.00
2.34
747
776
2.048222
GCGTGTCTAGCACCAGCA
60.048
61.111
10.44
0.00
44.97
4.41
748
777
2.383527
GCGTGTCTAGCACCAGCAC
61.384
63.158
10.44
0.00
44.97
4.40
749
778
1.006220
CGTGTCTAGCACCAGCACA
60.006
57.895
10.44
0.00
44.97
4.57
750
779
0.599991
CGTGTCTAGCACCAGCACAA
60.600
55.000
10.44
0.00
44.97
3.33
751
780
1.813513
GTGTCTAGCACCAGCACAAT
58.186
50.000
6.14
0.00
45.49
2.71
769
798
3.243267
ACAATAAACGGTGCAACAAGTCC
60.243
43.478
0.98
0.00
39.98
3.85
809
838
3.045601
TGCTTCTCAGGCTCACTAAAC
57.954
47.619
0.00
0.00
0.00
2.01
865
894
5.771666
ACTGTGACACCAATGATTTTCATCT
59.228
36.000
2.45
0.00
35.76
2.90
898
927
7.222872
TCTCTACTACGCTAGCTATAAAAGGT
58.777
38.462
13.93
2.97
39.81
3.50
1012
1041
3.959478
GACCGCATGGACGAAGATA
57.041
52.632
0.00
0.00
39.21
1.98
1038
1067
4.081030
CGCTGCAGCACCAAGACG
62.081
66.667
36.03
15.08
42.21
4.18
1100
1129
5.654650
CAGACTACCTCAAGTACCTCTTCAT
59.345
44.000
0.00
0.00
33.63
2.57
1170
1199
0.543410
TCTCCTCCTACCACGGCAAA
60.543
55.000
0.00
0.00
0.00
3.68
1253
1282
3.717294
CAACAGCCCTAGCCCCGT
61.717
66.667
0.00
0.00
41.25
5.28
1291
1320
1.668294
CTCCACTCACGGCTGAAGT
59.332
57.895
0.00
0.00
0.00
3.01
1428
1457
1.847798
ATGGGTTGGCCTGCTACGAA
61.848
55.000
3.32
0.00
34.45
3.85
1506
1535
1.302832
CAGGGCGCAGAACTTTCCT
60.303
57.895
10.83
0.00
0.00
3.36
1518
1547
1.770294
ACTTTCCTCCGGTTTTGCAA
58.230
45.000
0.00
0.00
0.00
4.08
1571
1607
2.334653
CTGAGAGATCGAGGGCGC
59.665
66.667
0.00
0.00
37.46
6.53
1679
1716
8.854979
TTTTGATTTCTACATGAGTGTTTGTG
57.145
30.769
0.00
0.00
39.77
3.33
1804
1851
4.755123
TCACTTTCTTTTGGCTAGTGCTAC
59.245
41.667
0.00
0.00
36.91
3.58
1807
1854
1.066430
TCTTTTGGCTAGTGCTACCCG
60.066
52.381
0.00
0.00
39.59
5.28
1808
1855
0.688487
TTTTGGCTAGTGCTACCCGT
59.312
50.000
0.00
0.00
39.59
5.28
1810
1857
1.940883
TTGGCTAGTGCTACCCGTCG
61.941
60.000
0.00
0.00
39.59
5.12
1855
1902
3.717712
GCATCGAGCGATTTACAGC
57.282
52.632
2.12
0.00
31.62
4.40
1856
1903
0.233332
GCATCGAGCGATTTACAGCC
59.767
55.000
2.12
0.00
31.62
4.85
1857
1904
0.504384
CATCGAGCGATTTACAGCCG
59.496
55.000
2.12
0.00
31.62
5.52
1863
1910
2.456000
CGATTTACAGCCGCACACT
58.544
52.632
0.00
0.00
0.00
3.55
1864
1911
0.095245
CGATTTACAGCCGCACACTG
59.905
55.000
0.00
0.00
41.08
3.66
1865
1912
0.447801
GATTTACAGCCGCACACTGG
59.552
55.000
0.00
0.00
39.55
4.00
1872
1919
2.666862
CCGCACACTGGCCGTAAA
60.667
61.111
0.00
0.00
0.00
2.01
1873
1920
2.255172
CCGCACACTGGCCGTAAAA
61.255
57.895
0.00
0.00
0.00
1.52
1874
1921
1.206578
CGCACACTGGCCGTAAAAG
59.793
57.895
0.00
0.00
0.00
2.27
1875
1922
1.081442
GCACACTGGCCGTAAAAGC
60.081
57.895
0.00
0.00
0.00
3.51
1876
1923
1.791103
GCACACTGGCCGTAAAAGCA
61.791
55.000
0.00
0.00
0.00
3.91
1877
1924
0.040425
CACACTGGCCGTAAAAGCAC
60.040
55.000
0.00
0.00
0.00
4.40
1878
1925
1.170290
ACACTGGCCGTAAAAGCACC
61.170
55.000
0.00
0.00
0.00
5.01
1879
1926
1.964373
ACTGGCCGTAAAAGCACCG
60.964
57.895
0.00
0.00
0.00
4.94
1880
1927
3.322706
CTGGCCGTAAAAGCACCGC
62.323
63.158
0.00
0.00
0.00
5.68
1881
1928
4.111016
GGCCGTAAAAGCACCGCC
62.111
66.667
0.00
0.00
36.02
6.13
1882
1929
4.111016
GCCGTAAAAGCACCGCCC
62.111
66.667
0.00
0.00
0.00
6.13
1883
1930
3.795342
CCGTAAAAGCACCGCCCG
61.795
66.667
0.00
0.00
0.00
6.13
1884
1931
3.795342
CGTAAAAGCACCGCCCGG
61.795
66.667
4.96
4.96
42.03
5.73
1885
1932
4.111016
GTAAAAGCACCGCCCGGC
62.111
66.667
6.63
0.00
39.32
6.13
1913
1960
4.933064
CCTCGCCGCCATCGTCTC
62.933
72.222
0.00
0.00
0.00
3.36
1914
1961
4.933064
CTCGCCGCCATCGTCTCC
62.933
72.222
0.00
0.00
0.00
3.71
1916
1963
4.933064
CGCCGCCATCGTCTCCTC
62.933
72.222
0.00
0.00
0.00
3.71
1917
1964
4.593864
GCCGCCATCGTCTCCTCC
62.594
72.222
0.00
0.00
0.00
4.30
1918
1965
3.147595
CCGCCATCGTCTCCTCCA
61.148
66.667
0.00
0.00
0.00
3.86
1919
1966
2.502492
CCGCCATCGTCTCCTCCAT
61.502
63.158
0.00
0.00
0.00
3.41
1920
1967
1.443407
CGCCATCGTCTCCTCCATT
59.557
57.895
0.00
0.00
0.00
3.16
1921
1968
0.179073
CGCCATCGTCTCCTCCATTT
60.179
55.000
0.00
0.00
0.00
2.32
1922
1969
1.587547
GCCATCGTCTCCTCCATTTC
58.412
55.000
0.00
0.00
0.00
2.17
1923
1970
1.139853
GCCATCGTCTCCTCCATTTCT
59.860
52.381
0.00
0.00
0.00
2.52
1924
1971
2.804933
GCCATCGTCTCCTCCATTTCTC
60.805
54.545
0.00
0.00
0.00
2.87
1925
1972
2.432146
CCATCGTCTCCTCCATTTCTCA
59.568
50.000
0.00
0.00
0.00
3.27
1926
1973
3.452474
CATCGTCTCCTCCATTTCTCAC
58.548
50.000
0.00
0.00
0.00
3.51
1927
1974
1.825474
TCGTCTCCTCCATTTCTCACC
59.175
52.381
0.00
0.00
0.00
4.02
1928
1975
1.469940
CGTCTCCTCCATTTCTCACCG
60.470
57.143
0.00
0.00
0.00
4.94
1929
1976
1.134670
GTCTCCTCCATTTCTCACCGG
60.135
57.143
0.00
0.00
0.00
5.28
1930
1977
0.905357
CTCCTCCATTTCTCACCGGT
59.095
55.000
0.00
0.00
0.00
5.28
1931
1978
0.613260
TCCTCCATTTCTCACCGGTG
59.387
55.000
29.26
29.26
0.00
4.94
1932
1979
0.324943
CCTCCATTTCTCACCGGTGT
59.675
55.000
32.74
11.90
0.00
4.16
1933
1980
1.676014
CCTCCATTTCTCACCGGTGTC
60.676
57.143
32.74
0.00
0.00
3.67
1934
1981
0.037697
TCCATTTCTCACCGGTGTCG
60.038
55.000
32.74
23.98
0.00
4.35
1935
1982
0.320421
CCATTTCTCACCGGTGTCGT
60.320
55.000
32.74
13.69
33.95
4.34
1936
1983
0.790207
CATTTCTCACCGGTGTCGTG
59.210
55.000
32.74
20.42
33.95
4.35
1937
1984
0.949105
ATTTCTCACCGGTGTCGTGC
60.949
55.000
32.74
0.00
33.95
5.34
1938
1985
2.299503
TTTCTCACCGGTGTCGTGCA
62.300
55.000
32.74
12.78
33.95
4.57
1939
1986
2.048222
CTCACCGGTGTCGTGCAT
60.048
61.111
32.74
0.00
33.95
3.96
1940
1987
2.356913
TCACCGGTGTCGTGCATG
60.357
61.111
32.74
5.46
33.95
4.06
1941
1988
4.088762
CACCGGTGTCGTGCATGC
62.089
66.667
26.95
11.82
33.95
4.06
1942
1989
4.617520
ACCGGTGTCGTGCATGCA
62.618
61.111
18.46
18.46
33.95
3.96
1943
1990
3.792047
CCGGTGTCGTGCATGCAG
61.792
66.667
23.41
15.31
33.95
4.41
1944
1991
4.450122
CGGTGTCGTGCATGCAGC
62.450
66.667
23.41
14.84
45.96
5.25
1955
2002
4.025858
ATGCAGCAGCGTGTCCCT
62.026
61.111
0.00
0.00
46.23
4.20
1956
2003
4.994471
TGCAGCAGCGTGTCCCTG
62.994
66.667
0.00
0.00
46.23
4.45
1957
2004
4.996434
GCAGCAGCGTGTCCCTGT
62.996
66.667
0.00
0.00
32.93
4.00
1958
2005
3.046087
CAGCAGCGTGTCCCTGTG
61.046
66.667
0.00
0.00
32.93
3.66
1959
2006
4.320456
AGCAGCGTGTCCCTGTGG
62.320
66.667
0.00
0.00
32.93
4.17
1960
2007
4.626081
GCAGCGTGTCCCTGTGGT
62.626
66.667
0.00
0.00
32.93
4.16
1961
2008
2.111043
CAGCGTGTCCCTGTGGTT
59.889
61.111
0.00
0.00
0.00
3.67
1962
2009
2.111043
AGCGTGTCCCTGTGGTTG
59.889
61.111
0.00
0.00
0.00
3.77
1963
2010
3.660111
GCGTGTCCCTGTGGTTGC
61.660
66.667
0.00
0.00
0.00
4.17
1964
2011
2.203139
CGTGTCCCTGTGGTTGCA
60.203
61.111
0.00
0.00
0.00
4.08
1965
2012
2.253758
CGTGTCCCTGTGGTTGCAG
61.254
63.158
0.00
0.00
36.31
4.41
1966
2013
2.203337
TGTCCCTGTGGTTGCAGC
60.203
61.111
0.00
0.00
35.28
5.25
1967
2014
2.113986
GTCCCTGTGGTTGCAGCT
59.886
61.111
0.00
0.00
35.28
4.24
1968
2015
1.968540
GTCCCTGTGGTTGCAGCTC
60.969
63.158
0.00
0.00
35.28
4.09
1969
2016
2.674380
CCCTGTGGTTGCAGCTCC
60.674
66.667
0.00
0.00
35.28
4.70
1970
2017
2.674380
CCTGTGGTTGCAGCTCCC
60.674
66.667
0.00
0.00
35.28
4.30
1971
2018
2.674380
CTGTGGTTGCAGCTCCCC
60.674
66.667
0.00
0.00
0.00
4.81
1972
2019
4.641645
TGTGGTTGCAGCTCCCCG
62.642
66.667
0.00
0.00
0.00
5.73
1973
2020
4.643387
GTGGTTGCAGCTCCCCGT
62.643
66.667
0.00
0.00
0.00
5.28
1974
2021
4.329545
TGGTTGCAGCTCCCCGTC
62.330
66.667
0.00
0.00
0.00
4.79
1975
2022
4.329545
GGTTGCAGCTCCCCGTCA
62.330
66.667
0.00
0.00
0.00
4.35
1976
2023
3.050275
GTTGCAGCTCCCCGTCAC
61.050
66.667
0.00
0.00
0.00
3.67
1977
2024
4.680237
TTGCAGCTCCCCGTCACG
62.680
66.667
0.00
0.00
0.00
4.35
1980
2027
4.436998
CAGCTCCCCGTCACGACC
62.437
72.222
0.00
0.00
0.00
4.79
1983
2030
4.112341
CTCCCCGTCACGACCGTC
62.112
72.222
0.00
0.00
0.00
4.79
1989
2036
4.702081
GTCACGACCGTCGCAGCT
62.702
66.667
20.67
0.00
45.12
4.24
1990
2037
3.973516
TCACGACCGTCGCAGCTT
61.974
61.111
20.67
0.00
45.12
3.74
1991
2038
3.767230
CACGACCGTCGCAGCTTG
61.767
66.667
20.67
7.42
45.12
4.01
1992
2039
3.973516
ACGACCGTCGCAGCTTGA
61.974
61.111
20.67
0.00
45.12
3.02
2003
2050
1.201998
CGCAGCTTGAATGCACTAGTG
60.202
52.381
18.93
18.93
44.05
2.74
2014
2061
3.569194
TGCACTAGTGGAAAACAGGAA
57.431
42.857
23.95
0.00
0.00
3.36
2035
2082
1.076677
ACTAGTCCCGGTTTCAGAGGA
59.923
52.381
0.00
0.00
0.00
3.71
2036
2083
2.292323
ACTAGTCCCGGTTTCAGAGGAT
60.292
50.000
0.00
0.00
0.00
3.24
2132
2179
1.208165
AATCGGGACAGAAGGGGCTT
61.208
55.000
0.00
0.00
0.00
4.35
2174
2222
1.630878
CAGGCAGGAGGACCTTTAGTT
59.369
52.381
0.00
0.00
45.36
2.24
2175
2223
2.040412
CAGGCAGGAGGACCTTTAGTTT
59.960
50.000
0.00
0.00
45.36
2.66
2204
2252
0.394080
ACACCGACCGGAACCAAAAA
60.394
50.000
16.07
0.00
38.96
1.94
2216
2264
3.431486
GGAACCAAAAAGGCATTCACACA
60.431
43.478
0.00
0.00
43.14
3.72
2299
2349
6.010201
AGGGGATTTTGGAGGGTTAATTTAGA
60.010
38.462
0.00
0.00
0.00
2.10
2328
2380
8.972458
TTCATATTGTGTTGGCTAGCTAATAA
57.028
30.769
17.12
12.49
0.00
1.40
2412
2473
2.864946
CTCGACACGCTAGCTAGTAAGA
59.135
50.000
21.62
12.02
0.00
2.10
2418
2479
5.109903
ACACGCTAGCTAGTAAGAAAATGG
58.890
41.667
21.62
3.55
0.00
3.16
2443
2504
7.556275
GGAGGAACCATTAATTACACAAGATCA
59.444
37.037
0.00
0.00
38.79
2.92
2462
2523
9.152595
CAAGATCATCATGAACATATACAGAGG
57.847
37.037
0.00
0.00
0.00
3.69
2497
2562
1.669604
TCTCCGAGAGAATGGTCGAG
58.330
55.000
0.00
0.00
38.50
4.04
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
9
10
2.533535
CGCGCAAAGAATGTTGTTTGAA
59.466
40.909
16.60
0.00
42.16
2.69
10
11
2.115595
CGCGCAAAGAATGTTGTTTGA
58.884
42.857
16.60
0.00
42.16
2.69
29
30
2.349886
GCTAGTCAGGCTTGAATCAACG
59.650
50.000
0.70
0.00
34.49
4.10
94
95
2.569134
GGACGAGAGCGCACTTCT
59.431
61.111
11.47
3.06
42.48
2.85
113
114
3.850740
GCTTGCGGGTTGTAAGTTTGTAC
60.851
47.826
0.00
0.00
41.80
2.90
134
138
3.451178
TGTAATTCTGGAGGAGTAGTGGC
59.549
47.826
0.00
0.00
0.00
5.01
139
143
3.376234
CGTCGTGTAATTCTGGAGGAGTA
59.624
47.826
0.00
0.00
0.00
2.59
160
164
0.672401
ACGTGTGCTTTACCCCATCG
60.672
55.000
0.00
0.00
0.00
3.84
201
205
2.903547
GCTTGGTCTCGCCGCAAAA
61.904
57.895
0.00
0.00
41.21
2.44
283
288
3.553095
AAGACCAGGGTTCCGCAGC
62.553
63.158
0.00
0.00
0.00
5.25
284
289
1.376037
GAAGACCAGGGTTCCGCAG
60.376
63.158
0.00
0.00
0.00
5.18
285
290
1.841556
AGAAGACCAGGGTTCCGCA
60.842
57.895
0.00
0.00
0.00
5.69
286
291
1.376037
CAGAAGACCAGGGTTCCGC
60.376
63.158
0.00
0.00
0.00
5.54
287
292
1.296715
CCAGAAGACCAGGGTTCCG
59.703
63.158
0.00
0.00
0.00
4.30
288
293
1.002011
GCCAGAAGACCAGGGTTCC
60.002
63.158
0.00
0.00
0.00
3.62
324
329
5.017490
TGAGGAGTTACTCTTACTTGAGGG
58.983
45.833
12.41
0.00
38.32
4.30
398
427
1.315257
ATGCTGCCGCCGAGAAAAAT
61.315
50.000
0.00
0.00
34.43
1.82
400
429
2.359850
ATGCTGCCGCCGAGAAAA
60.360
55.556
0.00
0.00
34.43
2.29
408
437
3.818787
CCTTCACCATGCTGCCGC
61.819
66.667
0.00
0.00
0.00
6.53
409
438
1.526575
AAACCTTCACCATGCTGCCG
61.527
55.000
0.00
0.00
0.00
5.69
410
439
0.037975
CAAACCTTCACCATGCTGCC
60.038
55.000
0.00
0.00
0.00
4.85
457
486
4.038271
ACTCTCTCCATTTTTCATGCCA
57.962
40.909
0.00
0.00
0.00
4.92
494
523
0.606401
AGTTGTCTTGGCCATCACGG
60.606
55.000
6.09
0.00
38.11
4.94
579
608
7.540055
GCTGTTTCTAGAAGTGAAAAATGATGG
59.460
37.037
5.12
0.00
35.54
3.51
591
620
6.479884
AGAAATGGATGCTGTTTCTAGAAGT
58.520
36.000
13.53
0.00
39.63
3.01
613
642
5.180680
TGAGACGACGAGAAAACATAAGAGA
59.819
40.000
0.00
0.00
0.00
3.10
614
643
5.284188
GTGAGACGACGAGAAAACATAAGAG
59.716
44.000
0.00
0.00
0.00
2.85
615
644
5.152097
GTGAGACGACGAGAAAACATAAGA
58.848
41.667
0.00
0.00
0.00
2.10
616
645
4.323868
GGTGAGACGACGAGAAAACATAAG
59.676
45.833
0.00
0.00
0.00
1.73
617
646
4.022589
AGGTGAGACGACGAGAAAACATAA
60.023
41.667
0.00
0.00
0.00
1.90
618
647
3.504906
AGGTGAGACGACGAGAAAACATA
59.495
43.478
0.00
0.00
0.00
2.29
619
648
2.296471
AGGTGAGACGACGAGAAAACAT
59.704
45.455
0.00
0.00
0.00
2.71
620
649
1.679680
AGGTGAGACGACGAGAAAACA
59.320
47.619
0.00
0.00
0.00
2.83
621
650
2.030981
AGAGGTGAGACGACGAGAAAAC
60.031
50.000
0.00
0.00
0.00
2.43
622
651
2.225963
GAGAGGTGAGACGACGAGAAAA
59.774
50.000
0.00
0.00
0.00
2.29
623
652
1.805345
GAGAGGTGAGACGACGAGAAA
59.195
52.381
0.00
0.00
0.00
2.52
624
653
1.270678
TGAGAGGTGAGACGACGAGAA
60.271
52.381
0.00
0.00
0.00
2.87
625
654
0.320697
TGAGAGGTGAGACGACGAGA
59.679
55.000
0.00
0.00
0.00
4.04
626
655
0.444651
GTGAGAGGTGAGACGACGAG
59.555
60.000
0.00
0.00
0.00
4.18
627
656
0.250166
TGTGAGAGGTGAGACGACGA
60.250
55.000
0.00
0.00
0.00
4.20
628
657
0.110147
GTGTGAGAGGTGAGACGACG
60.110
60.000
0.00
0.00
0.00
5.12
629
658
0.241481
GGTGTGAGAGGTGAGACGAC
59.759
60.000
0.00
0.00
0.00
4.34
630
659
1.235281
CGGTGTGAGAGGTGAGACGA
61.235
60.000
0.00
0.00
0.00
4.20
631
660
1.210413
CGGTGTGAGAGGTGAGACG
59.790
63.158
0.00
0.00
0.00
4.18
632
661
1.199558
GTACGGTGTGAGAGGTGAGAC
59.800
57.143
0.00
0.00
0.00
3.36
633
662
1.531423
GTACGGTGTGAGAGGTGAGA
58.469
55.000
0.00
0.00
0.00
3.27
634
663
0.168348
CGTACGGTGTGAGAGGTGAG
59.832
60.000
7.57
0.00
0.00
3.51
635
664
0.535780
ACGTACGGTGTGAGAGGTGA
60.536
55.000
21.06
0.00
0.00
4.02
636
665
0.386858
CACGTACGGTGTGAGAGGTG
60.387
60.000
21.06
0.21
41.89
4.00
637
666
1.954528
CACGTACGGTGTGAGAGGT
59.045
57.895
21.06
0.00
41.89
3.85
638
667
4.861883
CACGTACGGTGTGAGAGG
57.138
61.111
21.06
0.00
41.89
3.69
649
678
0.941542
TTCCAGCTGTTTGCACGTAC
59.058
50.000
13.81
0.00
45.94
3.67
661
690
0.254178
ATCAAGACGGCATTCCAGCT
59.746
50.000
0.00
0.00
34.17
4.24
671
700
5.897377
AAAAACCTCCATAATCAAGACGG
57.103
39.130
0.00
0.00
0.00
4.79
696
725
6.585322
GGTGCATTTCTGAAATTCTGAAGAAG
59.415
38.462
12.74
9.67
36.07
2.85
702
731
6.917533
AGTTAGGTGCATTTCTGAAATTCTG
58.082
36.000
12.74
5.49
0.00
3.02
710
739
3.425359
CGCTCAAGTTAGGTGCATTTCTG
60.425
47.826
0.00
0.00
0.00
3.02
720
749
2.094700
TGCTAGACACGCTCAAGTTAGG
60.095
50.000
0.00
0.00
0.00
2.69
747
776
3.243267
GGACTTGTTGCACCGTTTATTGT
60.243
43.478
0.00
0.00
0.00
2.71
748
777
3.243234
TGGACTTGTTGCACCGTTTATTG
60.243
43.478
0.00
0.00
0.00
1.90
749
778
2.952978
TGGACTTGTTGCACCGTTTATT
59.047
40.909
0.00
0.00
0.00
1.40
750
779
2.552315
CTGGACTTGTTGCACCGTTTAT
59.448
45.455
0.00
0.00
0.00
1.40
751
780
1.944024
CTGGACTTGTTGCACCGTTTA
59.056
47.619
0.00
0.00
0.00
2.01
769
798
3.829948
CAAGCACAAATTAGCTGGACTG
58.170
45.455
0.00
0.00
41.70
3.51
809
838
2.194201
TTCGGGGCAAGAAAGGTTAG
57.806
50.000
0.00
0.00
0.00
2.34
865
894
5.713389
AGCTAGCGTAGTAGAGATAGAGAGA
59.287
44.000
9.55
0.00
0.00
3.10
997
1026
2.989840
GGAATCTATCTTCGTCCATGCG
59.010
50.000
0.00
0.00
0.00
4.73
1150
1179
0.970937
TTGCCGTGGTAGGAGGAGAG
60.971
60.000
0.00
0.00
0.00
3.20
1170
1199
2.896801
CGGCAGACGCTTGTTGCTT
61.897
57.895
0.00
0.00
40.11
3.91
1278
1307
2.046892
CCCCACTTCAGCCGTGAG
60.047
66.667
0.00
0.00
34.35
3.51
1428
1457
1.115930
AGTCCACGTCAGGCTCAAGT
61.116
55.000
0.00
0.00
0.00
3.16
1506
1535
2.887889
CGAGCGTTGCAAAACCGGA
61.888
57.895
9.46
0.00
0.00
5.14
1591
1627
3.349022
AGAACGTACTCCTCTCCTCTTG
58.651
50.000
0.00
0.00
0.00
3.02
1775
1819
8.458843
GCACTAGCCAAAAGAAAGTGATAATTA
58.541
33.333
5.03
0.00
39.93
1.40
1777
1821
6.660949
AGCACTAGCCAAAAGAAAGTGATAAT
59.339
34.615
5.03
0.00
43.56
1.28
1780
1824
4.401925
AGCACTAGCCAAAAGAAAGTGAT
58.598
39.130
5.03
0.00
43.56
3.06
1782
1826
4.083271
GGTAGCACTAGCCAAAAGAAAGTG
60.083
45.833
0.00
0.00
43.56
3.16
1783
1827
4.072839
GGTAGCACTAGCCAAAAGAAAGT
58.927
43.478
0.00
0.00
43.56
2.66
1784
1828
4.686839
GGTAGCACTAGCCAAAAGAAAG
57.313
45.455
0.00
0.00
43.56
2.62
1834
1881
0.930310
TGTAAATCGCTCGATGCTGC
59.070
50.000
5.47
0.00
40.11
5.25
1835
1882
1.070975
GCTGTAAATCGCTCGATGCTG
60.071
52.381
5.47
5.29
40.11
4.41
1836
1883
1.212616
GCTGTAAATCGCTCGATGCT
58.787
50.000
5.47
0.00
40.11
3.79
1837
1884
0.233332
GGCTGTAAATCGCTCGATGC
59.767
55.000
5.47
4.51
34.70
3.91
1838
1885
0.504384
CGGCTGTAAATCGCTCGATG
59.496
55.000
5.47
0.00
34.70
3.84
1839
1886
1.215655
GCGGCTGTAAATCGCTCGAT
61.216
55.000
0.00
0.00
45.16
3.59
1840
1887
1.876714
GCGGCTGTAAATCGCTCGA
60.877
57.895
0.00
0.00
45.16
4.04
1841
1888
2.621000
GCGGCTGTAAATCGCTCG
59.379
61.111
0.00
0.00
45.16
5.03
1845
1892
0.095245
CAGTGTGCGGCTGTAAATCG
59.905
55.000
0.00
0.00
0.00
3.34
1846
1893
0.447801
CCAGTGTGCGGCTGTAAATC
59.552
55.000
0.00
0.00
32.41
2.17
1847
1894
1.586154
GCCAGTGTGCGGCTGTAAAT
61.586
55.000
0.00
0.00
46.56
1.40
1848
1895
2.258013
GCCAGTGTGCGGCTGTAAA
61.258
57.895
0.00
0.00
46.56
2.01
1849
1896
2.668212
GCCAGTGTGCGGCTGTAA
60.668
61.111
0.00
0.00
46.56
2.41
1855
1902
2.182614
CTTTTACGGCCAGTGTGCGG
62.183
60.000
2.24
8.81
37.56
5.69
1856
1903
1.206578
CTTTTACGGCCAGTGTGCG
59.793
57.895
2.24
0.00
0.00
5.34
1857
1904
1.081442
GCTTTTACGGCCAGTGTGC
60.081
57.895
2.24
0.00
0.00
4.57
1858
1905
0.040425
GTGCTTTTACGGCCAGTGTG
60.040
55.000
2.24
0.00
0.00
3.82
1859
1906
1.170290
GGTGCTTTTACGGCCAGTGT
61.170
55.000
2.24
0.00
0.00
3.55
1860
1907
1.579429
GGTGCTTTTACGGCCAGTG
59.421
57.895
2.24
0.00
0.00
3.66
1861
1908
1.964373
CGGTGCTTTTACGGCCAGT
60.964
57.895
2.24
4.29
0.00
4.00
1862
1909
2.867472
CGGTGCTTTTACGGCCAG
59.133
61.111
2.24
0.00
0.00
4.85
1863
1910
3.358707
GCGGTGCTTTTACGGCCA
61.359
61.111
2.24
0.00
39.95
5.36
1866
1913
3.795342
CGGGCGGTGCTTTTACGG
61.795
66.667
0.00
0.00
0.00
4.02
1867
1914
3.795342
CCGGGCGGTGCTTTTACG
61.795
66.667
0.00
0.00
0.00
3.18
1868
1915
4.111016
GCCGGGCGGTGCTTTTAC
62.111
66.667
1.81
0.00
37.65
2.01
1901
1948
2.032860
AATGGAGGAGACGATGGCGG
62.033
60.000
0.00
0.00
43.17
6.13
1902
1949
0.179073
AAATGGAGGAGACGATGGCG
60.179
55.000
0.00
0.00
44.79
5.69
1903
1950
1.139853
AGAAATGGAGGAGACGATGGC
59.860
52.381
0.00
0.00
0.00
4.40
1904
1951
2.432146
TGAGAAATGGAGGAGACGATGG
59.568
50.000
0.00
0.00
0.00
3.51
1905
1952
3.452474
GTGAGAAATGGAGGAGACGATG
58.548
50.000
0.00
0.00
0.00
3.84
1906
1953
2.432510
GGTGAGAAATGGAGGAGACGAT
59.567
50.000
0.00
0.00
0.00
3.73
1907
1954
1.825474
GGTGAGAAATGGAGGAGACGA
59.175
52.381
0.00
0.00
0.00
4.20
1908
1955
1.469940
CGGTGAGAAATGGAGGAGACG
60.470
57.143
0.00
0.00
0.00
4.18
1909
1956
1.134670
CCGGTGAGAAATGGAGGAGAC
60.135
57.143
0.00
0.00
0.00
3.36
1910
1957
1.195115
CCGGTGAGAAATGGAGGAGA
58.805
55.000
0.00
0.00
0.00
3.71
1911
1958
0.905357
ACCGGTGAGAAATGGAGGAG
59.095
55.000
6.12
0.00
0.00
3.69
1912
1959
0.613260
CACCGGTGAGAAATGGAGGA
59.387
55.000
31.31
0.00
0.00
3.71
1913
1960
0.324943
ACACCGGTGAGAAATGGAGG
59.675
55.000
40.21
10.24
0.00
4.30
1914
1961
1.726853
GACACCGGTGAGAAATGGAG
58.273
55.000
40.21
10.82
0.00
3.86
1915
1962
0.037697
CGACACCGGTGAGAAATGGA
60.038
55.000
40.21
0.00
0.00
3.41
1916
1963
0.320421
ACGACACCGGTGAGAAATGG
60.320
55.000
40.21
20.75
40.78
3.16
1917
1964
0.790207
CACGACACCGGTGAGAAATG
59.210
55.000
40.21
23.99
40.78
2.32
1918
1965
0.949105
GCACGACACCGGTGAGAAAT
60.949
55.000
40.21
18.59
40.78
2.17
1919
1966
1.593209
GCACGACACCGGTGAGAAA
60.593
57.895
40.21
0.00
40.78
2.52
1920
1967
2.028484
GCACGACACCGGTGAGAA
59.972
61.111
40.21
0.00
40.78
2.87
1921
1968
2.570284
ATGCACGACACCGGTGAGA
61.570
57.895
40.21
17.41
40.78
3.27
1922
1969
2.048222
ATGCACGACACCGGTGAG
60.048
61.111
40.21
31.55
40.78
3.51
1923
1970
2.356913
CATGCACGACACCGGTGA
60.357
61.111
40.21
18.00
40.78
4.02
1924
1971
4.088762
GCATGCACGACACCGGTG
62.089
66.667
32.83
32.83
40.78
4.94
1925
1972
4.617520
TGCATGCACGACACCGGT
62.618
61.111
18.46
0.00
40.78
5.28
1926
1973
3.792047
CTGCATGCACGACACCGG
61.792
66.667
18.46
0.00
40.78
5.28
1927
1974
4.450122
GCTGCATGCACGACACCG
62.450
66.667
18.46
6.37
42.31
4.94
1936
1983
4.471726
GGACACGCTGCTGCATGC
62.472
66.667
11.82
11.82
35.58
4.06
1937
1984
3.807538
GGGACACGCTGCTGCATG
61.808
66.667
16.29
13.34
38.47
4.06
1938
1985
4.025858
AGGGACACGCTGCTGCAT
62.026
61.111
16.29
0.00
39.64
3.96
1939
1986
4.994471
CAGGGACACGCTGCTGCA
62.994
66.667
16.29
0.88
37.59
4.41
1940
1987
4.996434
ACAGGGACACGCTGCTGC
62.996
66.667
14.04
5.34
46.25
5.25
1941
1988
3.046087
CACAGGGACACGCTGCTG
61.046
66.667
14.04
8.93
46.25
4.41
1942
1989
4.320456
CCACAGGGACACGCTGCT
62.320
66.667
14.04
1.76
46.25
4.24
1943
1990
4.626081
ACCACAGGGACACGCTGC
62.626
66.667
14.04
0.00
46.25
5.25
1945
1992
2.111043
CAACCACAGGGACACGCT
59.889
61.111
0.00
0.00
38.05
5.07
1946
1993
3.660111
GCAACCACAGGGACACGC
61.660
66.667
0.00
0.00
38.05
5.34
1947
1994
2.203139
TGCAACCACAGGGACACG
60.203
61.111
0.00
0.00
38.05
4.49
1948
1995
2.555547
GCTGCAACCACAGGGACAC
61.556
63.158
0.00
0.00
38.16
3.67
1949
1996
2.203337
GCTGCAACCACAGGGACA
60.203
61.111
0.00
0.00
38.16
4.02
1950
1997
1.968540
GAGCTGCAACCACAGGGAC
60.969
63.158
1.02
0.00
38.16
4.46
1951
1998
2.431683
GAGCTGCAACCACAGGGA
59.568
61.111
1.02
0.00
38.16
4.20
1952
1999
2.674380
GGAGCTGCAACCACAGGG
60.674
66.667
0.00
0.00
38.16
4.45
1953
2000
2.674380
GGGAGCTGCAACCACAGG
60.674
66.667
7.79
0.00
38.16
4.00
1954
2001
2.674380
GGGGAGCTGCAACCACAG
60.674
66.667
7.79
0.00
40.80
3.66
1955
2002
4.641645
CGGGGAGCTGCAACCACA
62.642
66.667
7.79
0.00
0.00
4.17
1956
2003
4.643387
ACGGGGAGCTGCAACCAC
62.643
66.667
7.79
11.85
0.00
4.16
1957
2004
4.329545
GACGGGGAGCTGCAACCA
62.330
66.667
7.79
0.00
0.00
3.67
1958
2005
4.329545
TGACGGGGAGCTGCAACC
62.330
66.667
7.79
4.81
0.00
3.77
1959
2006
3.050275
GTGACGGGGAGCTGCAAC
61.050
66.667
7.79
0.00
0.00
4.17
1960
2007
4.680237
CGTGACGGGGAGCTGCAA
62.680
66.667
7.79
0.00
0.00
4.08
1963
2010
4.436998
GGTCGTGACGGGGAGCTG
62.437
72.222
4.70
0.00
0.00
4.24
1966
2013
4.112341
GACGGTCGTGACGGGGAG
62.112
72.222
4.70
0.00
36.16
4.30
1972
2019
4.702081
AGCTGCGACGGTCGTGAC
62.702
66.667
28.75
18.53
42.81
3.67
1973
2020
3.973516
AAGCTGCGACGGTCGTGA
61.974
61.111
28.75
16.31
42.81
4.35
1974
2021
3.767230
CAAGCTGCGACGGTCGTG
61.767
66.667
28.75
22.19
42.81
4.35
1975
2022
2.765250
ATTCAAGCTGCGACGGTCGT
62.765
55.000
28.75
8.89
42.81
4.34
1976
2023
2.094659
ATTCAAGCTGCGACGGTCG
61.095
57.895
25.18
25.18
43.89
4.79
1977
2024
1.421485
CATTCAAGCTGCGACGGTC
59.579
57.895
0.00
0.00
0.00
4.79
1978
2025
2.680913
GCATTCAAGCTGCGACGGT
61.681
57.895
0.00
0.00
0.00
4.83
1979
2026
2.099062
GCATTCAAGCTGCGACGG
59.901
61.111
0.00
0.00
0.00
4.79
1980
2027
1.510623
GTGCATTCAAGCTGCGACG
60.511
57.895
0.00
0.00
42.62
5.12
1981
2028
1.061711
CTAGTGCATTCAAGCTGCGAC
59.938
52.381
0.00
0.00
42.62
5.19
1982
2029
1.338105
ACTAGTGCATTCAAGCTGCGA
60.338
47.619
0.00
0.00
42.62
5.10
1983
2030
1.081892
ACTAGTGCATTCAAGCTGCG
58.918
50.000
0.00
0.00
42.62
5.18
1984
2031
1.131883
CCACTAGTGCATTCAAGCTGC
59.868
52.381
17.86
0.00
40.10
5.25
1985
2032
2.703416
TCCACTAGTGCATTCAAGCTG
58.297
47.619
17.86
0.00
34.99
4.24
1986
2033
3.423539
TTCCACTAGTGCATTCAAGCT
57.576
42.857
17.86
0.00
34.99
3.74
1987
2034
4.229876
GTTTTCCACTAGTGCATTCAAGC
58.770
43.478
17.86
3.62
0.00
4.01
1988
2035
5.437289
TGTTTTCCACTAGTGCATTCAAG
57.563
39.130
17.86
2.03
0.00
3.02
1989
2036
4.278170
CCTGTTTTCCACTAGTGCATTCAA
59.722
41.667
17.86
2.61
0.00
2.69
1990
2037
3.820467
CCTGTTTTCCACTAGTGCATTCA
59.180
43.478
17.86
10.64
0.00
2.57
1991
2038
4.072131
TCCTGTTTTCCACTAGTGCATTC
58.928
43.478
17.86
6.82
0.00
2.67
1992
2039
4.098914
TCCTGTTTTCCACTAGTGCATT
57.901
40.909
17.86
0.00
0.00
3.56
2003
2050
3.072211
CGGGACTAGTTTCCTGTTTTCC
58.928
50.000
12.47
0.00
37.28
3.13
2014
2061
1.900486
CCTCTGAAACCGGGACTAGTT
59.100
52.381
6.32
0.00
0.00
2.24
2035
2082
4.576879
GTTCCGGAACCAGAACTAAAGAT
58.423
43.478
33.02
0.00
39.42
2.40
2036
2083
3.999046
GTTCCGGAACCAGAACTAAAGA
58.001
45.455
33.02
0.00
39.42
2.52
2052
2099
0.322648
ACCTTTTAGTCCCGGTTCCG
59.677
55.000
0.00
4.08
0.00
4.30
2115
2162
2.203938
AAGCCCCTTCTGTCCCGA
60.204
61.111
0.00
0.00
0.00
5.14
2190
2238
0.966179
ATGCCTTTTTGGTTCCGGTC
59.034
50.000
0.00
0.00
38.35
4.79
2196
2244
3.902881
TGTGTGAATGCCTTTTTGGTT
57.097
38.095
0.00
0.00
38.35
3.67
2204
2252
1.460504
CTGCTGATGTGTGAATGCCT
58.539
50.000
0.00
0.00
0.00
4.75
2216
2264
1.077644
CCTTCTGCCAGCTGCTGAT
60.078
57.895
30.10
0.00
45.84
2.90
2299
2349
6.125029
AGCTAGCCAACACAATATGAAATCT
58.875
36.000
12.13
0.00
0.00
2.40
2316
2368
5.986741
GGTCACTTCTCTTTATTAGCTAGCC
59.013
44.000
12.13
0.00
0.00
3.93
2350
2406
0.179137
CTAGCATCGACCAAGCACGA
60.179
55.000
0.00
0.00
42.49
4.35
2386
2447
0.961358
AGCTAGCGTGTCGAGGTCTT
60.961
55.000
9.55
0.00
0.00
3.01
2390
2451
1.579698
TACTAGCTAGCGTGTCGAGG
58.420
55.000
20.91
0.00
0.00
4.63
2418
2479
8.506168
TGATCTTGTGTAATTAATGGTTCCTC
57.494
34.615
0.00
0.00
0.00
3.71
2443
2504
7.290948
TCACTTCCCTCTGTATATGTTCATGAT
59.709
37.037
0.00
0.00
0.00
2.45
2462
2523
2.094442
CGGAGAAAGAGAGGTCACTTCC
60.094
54.545
0.00
0.00
0.00
3.46
2489
2554
2.032030
CGAAAACTTGTTGCTCGACCAT
60.032
45.455
10.73
0.00
0.00
3.55
2497
2562
7.168637
TCGGATAGATATACGAAAACTTGTTGC
59.831
37.037
4.69
0.00
45.29
4.17
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.