Multiple sequence alignment - TraesCS2A01G377500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G377500 chr2A 100.000 2411 0 0 1 2411 619759523 619761933 0.000000e+00 4453.0
1 TraesCS2A01G377500 chr2D 82.439 1509 182 37 829 2324 477389458 477390896 0.000000e+00 1242.0
2 TraesCS2A01G377500 chr2D 80.231 693 113 14 42 723 477275194 477275873 1.290000e-137 499.0
3 TraesCS2A01G377500 chr2B 80.864 1134 159 42 1206 2324 559412043 559413133 0.000000e+00 839.0
4 TraesCS2A01G377500 chr2B 81.250 400 57 10 357 748 559311226 559311615 8.370000e-80 307.0
5 TraesCS2A01G377500 chr7B 96.101 436 15 2 977 1411 63934956 63935390 0.000000e+00 710.0
6 TraesCS2A01G377500 chr7B 81.106 434 63 11 1899 2324 15071113 15071535 1.790000e-86 329.0
7 TraesCS2A01G377500 chr7B 92.727 55 4 0 2270 2324 15019901 15019955 1.990000e-11 80.5
8 TraesCS2A01G377500 chr7D 84.803 737 76 27 699 1415 91700148 91699428 0.000000e+00 708.0
9 TraesCS2A01G377500 chr7D 81.985 272 45 4 91 361 508896786 508897054 6.710000e-56 228.0
10 TraesCS2A01G377500 chr7D 76.538 260 46 12 96 350 11414296 11414545 7.000000e-26 128.0
11 TraesCS2A01G377500 chr7D 73.818 275 55 13 89 361 3103772 3104031 2.550000e-15 93.5
12 TraesCS2A01G377500 chr7D 73.741 278 56 13 89 364 3159996 3159734 2.550000e-15 93.5
13 TraesCS2A01G377500 chr6D 95.642 413 18 0 999 1411 116345405 116344993 0.000000e+00 664.0
14 TraesCS2A01G377500 chr4D 94.393 428 22 2 985 1411 444177275 444177701 0.000000e+00 656.0
15 TraesCS2A01G377500 chr4D 93.166 439 30 0 992 1430 415583732 415583294 0.000000e+00 645.0
16 TraesCS2A01G377500 chr4D 79.077 325 64 4 41 363 484062801 484063123 1.120000e-53 220.0
17 TraesCS2A01G377500 chr1A 95.169 414 20 0 998 1411 468599198 468598785 0.000000e+00 654.0
18 TraesCS2A01G377500 chr1A 93.258 445 26 4 970 1411 400975378 400974935 0.000000e+00 652.0
19 TraesCS2A01G377500 chr4A 93.593 437 28 0 994 1430 48275446 48275882 0.000000e+00 652.0
20 TraesCS2A01G377500 chr7A 80.374 214 31 6 2114 2326 93259709 93259506 4.150000e-33 152.0
21 TraesCS2A01G377500 chr7A 74.352 347 76 10 20 361 547364917 547365255 4.180000e-28 135.0
22 TraesCS2A01G377500 chr3A 79.808 208 40 2 22 229 602856973 602857178 1.490000e-32 150.0
23 TraesCS2A01G377500 chr6B 74.011 354 79 9 21 370 435821954 435821610 5.410000e-27 132.0
24 TraesCS2A01G377500 chr6A 77.647 170 37 1 89 258 322982348 322982516 4.240000e-18 102.0
25 TraesCS2A01G377500 chr4B 76.136 176 31 7 89 259 184295915 184296084 5.520000e-12 82.4
26 TraesCS2A01G377500 chr4B 78.049 123 25 2 95 216 1738078 1737957 2.570000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G377500 chr2A 619759523 619761933 2410 False 4453 4453 100.000 1 2411 1 chr2A.!!$F1 2410
1 TraesCS2A01G377500 chr2D 477389458 477390896 1438 False 1242 1242 82.439 829 2324 1 chr2D.!!$F2 1495
2 TraesCS2A01G377500 chr2D 477275194 477275873 679 False 499 499 80.231 42 723 1 chr2D.!!$F1 681
3 TraesCS2A01G377500 chr2B 559412043 559413133 1090 False 839 839 80.864 1206 2324 1 chr2B.!!$F2 1118
4 TraesCS2A01G377500 chr7D 91699428 91700148 720 True 708 708 84.803 699 1415 1 chr7D.!!$R2 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.243636 CCCCTTGAACCGCAATTGTC 59.756 55.0 7.4 0.0 35.59 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 1457 0.251787 AACCAAGAAGGGACCATGGC 60.252 55.0 13.04 4.47 43.89 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.944129 TGCCCTTATGAACTAATGCCC 58.056 47.619 0.00 0.00 0.00 5.36
21 22 2.239400 GCCCTTATGAACTAATGCCCC 58.761 52.381 0.00 0.00 0.00 5.80
22 23 2.158460 GCCCTTATGAACTAATGCCCCT 60.158 50.000 0.00 0.00 0.00 4.79
23 24 3.691311 GCCCTTATGAACTAATGCCCCTT 60.691 47.826 0.00 0.00 0.00 3.95
24 25 3.891366 CCCTTATGAACTAATGCCCCTTG 59.109 47.826 0.00 0.00 0.00 3.61
25 26 4.386312 CCCTTATGAACTAATGCCCCTTGA 60.386 45.833 0.00 0.00 0.00 3.02
26 27 5.200483 CCTTATGAACTAATGCCCCTTGAA 58.800 41.667 0.00 0.00 0.00 2.69
27 28 5.067805 CCTTATGAACTAATGCCCCTTGAAC 59.932 44.000 0.00 0.00 0.00 3.18
28 29 2.802719 TGAACTAATGCCCCTTGAACC 58.197 47.619 0.00 0.00 0.00 3.62
29 30 1.743394 GAACTAATGCCCCTTGAACCG 59.257 52.381 0.00 0.00 0.00 4.44
30 31 0.679960 ACTAATGCCCCTTGAACCGC 60.680 55.000 0.00 0.00 0.00 5.68
31 32 0.679640 CTAATGCCCCTTGAACCGCA 60.680 55.000 0.00 0.00 35.35 5.69
32 33 0.251386 TAATGCCCCTTGAACCGCAA 60.251 50.000 0.00 0.00 34.38 4.85
33 34 0.904394 AATGCCCCTTGAACCGCAAT 60.904 50.000 0.00 0.00 35.59 3.56
34 35 0.904394 ATGCCCCTTGAACCGCAATT 60.904 50.000 0.00 0.00 35.59 2.32
35 36 1.079888 GCCCCTTGAACCGCAATTG 60.080 57.895 0.00 0.00 35.59 2.32
36 37 1.815817 GCCCCTTGAACCGCAATTGT 61.816 55.000 7.40 0.00 35.59 2.71
37 38 0.243636 CCCCTTGAACCGCAATTGTC 59.756 55.000 7.40 0.00 35.59 3.18
38 39 0.958091 CCCTTGAACCGCAATTGTCA 59.042 50.000 7.40 0.00 35.59 3.58
39 40 1.335872 CCCTTGAACCGCAATTGTCAC 60.336 52.381 7.40 0.00 35.59 3.67
40 41 1.335872 CCTTGAACCGCAATTGTCACC 60.336 52.381 7.40 0.00 35.59 4.02
55 56 1.098712 TCACCGTTGAACCCTTGCAC 61.099 55.000 0.00 0.00 0.00 4.57
57 58 0.467290 ACCGTTGAACCCTTGCACAT 60.467 50.000 0.00 0.00 0.00 3.21
62 63 4.188462 CGTTGAACCCTTGCACATATCTA 58.812 43.478 0.00 0.00 0.00 1.98
71 72 4.641989 CCTTGCACATATCTAAAGCACCTT 59.358 41.667 0.00 0.00 34.56 3.50
73 74 6.488006 CCTTGCACATATCTAAAGCACCTTAT 59.512 38.462 0.00 0.00 34.56 1.73
74 75 6.866010 TGCACATATCTAAAGCACCTTATG 57.134 37.500 0.00 0.00 0.00 1.90
90 91 4.263418 ACCTTATGCCAAATTTTGCCACAT 60.263 37.500 11.39 9.00 0.00 3.21
100 101 3.624326 TTTTGCCACATGACGAGAAAG 57.376 42.857 0.00 0.00 0.00 2.62
109 110 3.008049 ACATGACGAGAAAGCCTAACCTT 59.992 43.478 0.00 0.00 0.00 3.50
113 114 2.094338 ACGAGAAAGCCTAACCTTACCG 60.094 50.000 0.00 0.00 0.00 4.02
115 116 1.907255 AGAAAGCCTAACCTTACCGCT 59.093 47.619 0.00 0.00 0.00 5.52
117 118 1.569653 AAGCCTAACCTTACCGCTCT 58.430 50.000 0.00 0.00 0.00 4.09
121 122 2.692041 GCCTAACCTTACCGCTCTAAGA 59.308 50.000 0.05 0.00 0.00 2.10
125 126 2.817665 ACCTTACCGCTCTAAGAAGGT 58.182 47.619 0.00 0.00 43.99 3.50
143 144 2.812499 GGCAGGAATCTACGCCGA 59.188 61.111 0.00 0.00 34.26 5.54
157 158 2.758089 GCCGAAGCTCCGTCGACTA 61.758 63.158 14.70 0.31 41.02 2.59
158 159 2.023318 CCGAAGCTCCGTCGACTAT 58.977 57.895 14.70 0.00 41.02 2.12
161 162 2.601741 CCGAAGCTCCGTCGACTATAAC 60.602 54.545 14.70 0.00 41.02 1.89
166 167 2.553172 GCTCCGTCGACTATAACCAGAT 59.447 50.000 14.70 0.00 0.00 2.90
170 171 3.304525 CCGTCGACTATAACCAGATGGAC 60.305 52.174 14.70 0.00 39.64 4.02
180 181 1.095600 CCAGATGGACGAACTCGAGA 58.904 55.000 21.68 0.00 43.39 4.04
186 187 2.168496 TGGACGAACTCGAGAAGGATT 58.832 47.619 21.68 1.43 43.02 3.01
191 192 3.065648 ACGAACTCGAGAAGGATTAGAGC 59.934 47.826 21.68 0.00 43.02 4.09
193 194 2.312390 ACTCGAGAAGGATTAGAGCCC 58.688 52.381 21.68 0.00 30.53 5.19
195 196 1.133884 TCGAGAAGGATTAGAGCCCGA 60.134 52.381 0.00 0.00 0.00 5.14
204 205 3.374367 GGATTAGAGCCCGAAAGACAAAC 59.626 47.826 0.00 0.00 0.00 2.93
216 217 6.404293 CCCGAAAGACAAACTCAAAGAAGAAA 60.404 38.462 0.00 0.00 0.00 2.52
217 218 6.688813 CCGAAAGACAAACTCAAAGAAGAAAG 59.311 38.462 0.00 0.00 0.00 2.62
218 219 6.195428 CGAAAGACAAACTCAAAGAAGAAAGC 59.805 38.462 0.00 0.00 0.00 3.51
219 220 6.515272 AAGACAAACTCAAAGAAGAAAGCA 57.485 33.333 0.00 0.00 0.00 3.91
225 226 2.485426 CTCAAAGAAGAAAGCATCGCCA 59.515 45.455 0.00 0.00 0.00 5.69
232 233 1.718757 GAAAGCATCGCCATCCGCTT 61.719 55.000 0.00 0.00 46.26 4.68
237 238 2.173669 ATCGCCATCCGCTTGAACG 61.174 57.895 0.00 0.00 36.73 3.95
246 247 4.389576 GCTTGAACGCCGCACCAG 62.390 66.667 0.00 0.00 0.00 4.00
247 248 2.972505 CTTGAACGCCGCACCAGT 60.973 61.111 0.00 0.00 0.00 4.00
248 249 3.240606 CTTGAACGCCGCACCAGTG 62.241 63.158 0.00 0.00 0.00 3.66
292 293 6.567050 TGTAAACTACTAATTAGTGCGGAGG 58.433 40.000 25.27 11.74 40.44 4.30
305 306 4.191015 GGAGGCATCGGGGTTCCC 62.191 72.222 0.00 0.00 41.09 3.97
306 307 3.090532 GAGGCATCGGGGTTCCCT 61.091 66.667 7.87 0.00 42.67 4.20
310 312 2.366972 CATCGGGGTTCCCTCCCT 60.367 66.667 7.87 0.00 46.27 4.20
317 319 3.256960 GTTCCCTCCCTGCCACCA 61.257 66.667 0.00 0.00 0.00 4.17
318 320 2.935481 TTCCCTCCCTGCCACCAG 60.935 66.667 0.00 0.00 38.85 4.00
352 354 2.735772 GCAGAGGGGAGGCGAATCA 61.736 63.158 0.00 0.00 0.00 2.57
373 375 2.669569 GGCTCGCCAGTGAAAGCA 60.670 61.111 2.41 0.00 36.47 3.91
378 380 2.684843 CGCCAGTGAAAGCAGGAGC 61.685 63.158 0.00 0.00 42.56 4.70
380 382 1.584380 GCCAGTGAAAGCAGGAGCAG 61.584 60.000 0.00 0.00 45.49 4.24
381 383 0.959372 CCAGTGAAAGCAGGAGCAGG 60.959 60.000 0.00 0.00 45.49 4.85
391 393 0.695347 CAGGAGCAGGGAGTTTTCCT 59.305 55.000 0.00 0.00 43.49 3.36
394 396 2.573915 AGGAGCAGGGAGTTTTCCTTAG 59.426 50.000 0.00 0.00 43.49 2.18
396 398 1.004862 AGCAGGGAGTTTTCCTTAGCC 59.995 52.381 0.00 0.00 43.49 3.93
398 400 1.003233 CAGGGAGTTTTCCTTAGCCGT 59.997 52.381 0.00 0.00 43.49 5.68
412 414 1.821258 GCCGTCTAGGGTGGTTAGG 59.179 63.158 0.00 0.00 41.48 2.69
420 422 1.670059 AGGGTGGTTAGGGGAGAAAG 58.330 55.000 0.00 0.00 0.00 2.62
427 429 3.032459 GGTTAGGGGAGAAAGACGAGAT 58.968 50.000 0.00 0.00 0.00 2.75
428 430 3.451540 GGTTAGGGGAGAAAGACGAGATT 59.548 47.826 0.00 0.00 0.00 2.40
429 431 4.081031 GGTTAGGGGAGAAAGACGAGATTT 60.081 45.833 0.00 0.00 0.00 2.17
430 432 5.489249 GTTAGGGGAGAAAGACGAGATTTT 58.511 41.667 0.00 0.00 0.00 1.82
431 433 4.642466 AGGGGAGAAAGACGAGATTTTT 57.358 40.909 0.00 0.00 0.00 1.94
465 467 8.902806 TCTCATAGTGACAAAATTTGAAACACT 58.097 29.630 25.46 25.46 41.42 3.55
467 469 8.465999 TCATAGTGACAAAATTTGAAACACTGT 58.534 29.630 27.72 23.28 40.19 3.55
480 482 7.490962 TTGAAACACTGTTGTATAGAGTTGG 57.509 36.000 0.00 0.00 33.55 3.77
501 504 4.251268 GGCTGTAAACCGAACATAAGAGT 58.749 43.478 0.00 0.00 0.00 3.24
670 682 6.798315 TTTAGACGAGTATAGATTCTCCCG 57.202 41.667 0.00 0.00 0.00 5.14
675 687 3.193691 CGAGTATAGATTCTCCCGGCAAT 59.806 47.826 0.00 0.00 0.00 3.56
679 691 2.806945 AGATTCTCCCGGCAATTTGA 57.193 45.000 0.00 0.00 0.00 2.69
715 727 2.101582 GAGAAGTGCTACCACGGATCAT 59.898 50.000 0.00 0.00 46.62 2.45
728 740 0.604780 GGATCATGATCCGTGGCCAG 60.605 60.000 33.48 0.00 46.84 4.85
729 741 1.228063 ATCATGATCCGTGGCCAGC 60.228 57.895 5.11 0.00 0.00 4.85
739 751 4.149019 TGGCCAGCCCCACACAAA 62.149 61.111 0.00 0.00 34.56 2.83
741 753 2.837291 GCCAGCCCCACACAAACA 60.837 61.111 0.00 0.00 0.00 2.83
747 759 0.598065 GCCCCACACAAACACATCTC 59.402 55.000 0.00 0.00 0.00 2.75
755 767 1.416401 ACAAACACATCTCCACCGTCT 59.584 47.619 0.00 0.00 0.00 4.18
756 768 2.069273 CAAACACATCTCCACCGTCTC 58.931 52.381 0.00 0.00 0.00 3.36
757 769 0.608640 AACACATCTCCACCGTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
758 770 1.258445 ACACATCTCCACCGTCTCCC 61.258 60.000 0.00 0.00 0.00 4.30
759 771 1.078528 ACATCTCCACCGTCTCCCA 59.921 57.895 0.00 0.00 0.00 4.37
760 772 0.325671 ACATCTCCACCGTCTCCCAT 60.326 55.000 0.00 0.00 0.00 4.00
761 773 0.833287 CATCTCCACCGTCTCCCATT 59.167 55.000 0.00 0.00 0.00 3.16
762 774 1.123928 ATCTCCACCGTCTCCCATTC 58.876 55.000 0.00 0.00 0.00 2.67
763 775 0.976073 TCTCCACCGTCTCCCATTCC 60.976 60.000 0.00 0.00 0.00 3.01
767 779 2.298661 ACCGTCTCCCATTCCCCAC 61.299 63.158 0.00 0.00 0.00 4.61
768 780 2.186903 CGTCTCCCATTCCCCACG 59.813 66.667 0.00 0.00 0.00 4.94
771 783 4.506255 CTCCCATTCCCCACGCCC 62.506 72.222 0.00 0.00 0.00 6.13
776 788 3.873812 ATTCCCCACGCCCGATCC 61.874 66.667 0.00 0.00 0.00 3.36
810 822 3.905678 CGCGCTCCTCGATCCCTT 61.906 66.667 5.56 0.00 41.67 3.95
812 824 2.786495 GCGCTCCTCGATCCCTTCA 61.786 63.158 0.00 0.00 41.67 3.02
820 832 2.192979 GATCCCTTCATGGCGCCA 59.807 61.111 34.80 34.80 0.00 5.69
822 834 0.825010 GATCCCTTCATGGCGCCATT 60.825 55.000 38.86 23.10 33.90 3.16
824 836 0.478072 TCCCTTCATGGCGCCATTAT 59.522 50.000 38.86 18.34 33.90 1.28
827 839 0.518636 CTTCATGGCGCCATTATCCG 59.481 55.000 38.86 26.32 33.90 4.18
838 850 0.944386 CATTATCCGTCCAAAGCCCG 59.056 55.000 0.00 0.00 0.00 6.13
888 902 1.571955 GCCAACCTCCAAATTCCCAT 58.428 50.000 0.00 0.00 0.00 4.00
898 916 5.456763 CCTCCAAATTCCCATCCCTACTTAG 60.457 48.000 0.00 0.00 0.00 2.18
901 919 2.579624 TTCCCATCCCTACTTAGCCA 57.420 50.000 0.00 0.00 0.00 4.75
904 922 2.182312 TCCCATCCCTACTTAGCCATCT 59.818 50.000 0.00 0.00 0.00 2.90
908 926 4.421131 CATCCCTACTTAGCCATCTACCT 58.579 47.826 0.00 0.00 0.00 3.08
909 927 3.845860 TCCCTACTTAGCCATCTACCTG 58.154 50.000 0.00 0.00 0.00 4.00
911 930 2.965831 CCTACTTAGCCATCTACCTGCA 59.034 50.000 0.00 0.00 0.00 4.41
914 933 0.464036 TTAGCCATCTACCTGCACCG 59.536 55.000 0.00 0.00 0.00 4.94
925 944 4.526770 TGCACCGCAGATCATCAG 57.473 55.556 0.00 0.00 33.32 2.90
933 952 1.405933 CGCAGATCATCAGAACCCACA 60.406 52.381 0.00 0.00 0.00 4.17
940 959 4.619227 CAGAACCCACACCGCCGT 62.619 66.667 0.00 0.00 0.00 5.68
953 980 2.124695 GCCGTCCCAATCTCCCAC 60.125 66.667 0.00 0.00 0.00 4.61
954 981 2.590092 CCGTCCCAATCTCCCACC 59.410 66.667 0.00 0.00 0.00 4.61
1272 1299 4.803426 CAGAGCTCCGCCGTGTCC 62.803 72.222 10.93 0.00 0.00 4.02
1430 1457 2.125147 TCCGAATGCTTCCTGCCG 60.125 61.111 0.00 0.00 42.00 5.69
1438 1465 2.825836 CTTCCTGCCGCCATGGTC 60.826 66.667 14.67 4.79 41.21 4.02
1443 1470 4.424711 TGCCGCCATGGTCCCTTC 62.425 66.667 14.67 0.00 41.21 3.46
1447 1474 1.750399 CGCCATGGTCCCTTCTTGG 60.750 63.158 14.67 0.00 33.94 3.61
1448 1475 1.384191 GCCATGGTCCCTTCTTGGT 59.616 57.895 14.67 0.00 33.52 3.67
1449 1476 0.251787 GCCATGGTCCCTTCTTGGTT 60.252 55.000 14.67 0.00 33.52 3.67
1450 1477 1.549203 CCATGGTCCCTTCTTGGTTG 58.451 55.000 2.57 0.00 0.00 3.77
1455 1482 1.636003 GGTCCCTTCTTGGTTGATCCT 59.364 52.381 0.00 0.00 37.07 3.24
1479 1506 2.949644 GGGGATTTATTTCGTCCACCTG 59.050 50.000 0.00 0.00 33.62 4.00
1483 1510 1.434555 TTATTTCGTCCACCTGTGCG 58.565 50.000 0.00 0.00 0.00 5.34
1491 1518 2.310233 CCACCTGTGCGTCGAGTTG 61.310 63.158 0.00 0.00 0.00 3.16
1492 1519 1.591594 CACCTGTGCGTCGAGTTGT 60.592 57.895 0.00 0.00 0.00 3.32
1494 1521 0.461339 ACCTGTGCGTCGAGTTGTTT 60.461 50.000 0.00 0.00 0.00 2.83
1495 1522 1.202440 ACCTGTGCGTCGAGTTGTTTA 60.202 47.619 0.00 0.00 0.00 2.01
1496 1523 1.455786 CCTGTGCGTCGAGTTGTTTAG 59.544 52.381 0.00 0.00 0.00 1.85
1497 1524 1.455786 CTGTGCGTCGAGTTGTTTAGG 59.544 52.381 0.00 0.00 0.00 2.69
1498 1525 1.202440 TGTGCGTCGAGTTGTTTAGGT 60.202 47.619 0.00 0.00 0.00 3.08
1499 1526 1.862827 GTGCGTCGAGTTGTTTAGGTT 59.137 47.619 0.00 0.00 0.00 3.50
1500 1527 2.097056 GTGCGTCGAGTTGTTTAGGTTC 60.097 50.000 0.00 0.00 0.00 3.62
1502 1529 3.004629 TGCGTCGAGTTGTTTAGGTTCTA 59.995 43.478 0.00 0.00 0.00 2.10
1503 1530 3.363128 GCGTCGAGTTGTTTAGGTTCTAC 59.637 47.826 0.00 0.00 0.00 2.59
1518 1545 8.563123 TTAGGTTCTACTAGTCGATGATATGG 57.437 38.462 0.00 0.00 0.00 2.74
1538 1565 3.587061 TGGTCCTGTGATGTTGATTACCT 59.413 43.478 0.00 0.00 0.00 3.08
1539 1566 4.780554 TGGTCCTGTGATGTTGATTACCTA 59.219 41.667 0.00 0.00 0.00 3.08
1542 1569 6.260936 GGTCCTGTGATGTTGATTACCTATTG 59.739 42.308 0.00 0.00 0.00 1.90
1544 1571 5.532406 CCTGTGATGTTGATTACCTATTGGG 59.468 44.000 0.00 0.00 41.89 4.12
1563 1590 3.581770 TGGGAAATTGCAATGGATGTGAA 59.418 39.130 13.82 0.00 0.00 3.18
1564 1591 4.225492 TGGGAAATTGCAATGGATGTGAAT 59.775 37.500 13.82 0.00 0.00 2.57
1565 1592 4.573201 GGGAAATTGCAATGGATGTGAATG 59.427 41.667 13.82 0.00 0.00 2.67
1566 1593 5.180271 GGAAATTGCAATGGATGTGAATGT 58.820 37.500 13.82 0.00 0.00 2.71
1567 1594 5.064198 GGAAATTGCAATGGATGTGAATGTG 59.936 40.000 13.82 0.00 0.00 3.21
1568 1595 5.408880 AATTGCAATGGATGTGAATGTGA 57.591 34.783 13.82 0.00 0.00 3.58
1569 1596 5.607939 ATTGCAATGGATGTGAATGTGAT 57.392 34.783 12.09 0.00 0.00 3.06
1570 1597 6.718522 ATTGCAATGGATGTGAATGTGATA 57.281 33.333 12.09 0.00 0.00 2.15
1603 1630 6.069789 TCCTCATTTCAGAGATCTGGTGAATT 60.070 38.462 14.89 10.34 43.91 2.17
1604 1631 6.038382 CCTCATTTCAGAGATCTGGTGAATTG 59.962 42.308 20.85 20.85 43.91 2.32
1609 1636 7.621428 TTCAGAGATCTGGTGAATTGAATTC 57.379 36.000 10.85 10.85 43.91 2.17
1611 1638 7.046652 TCAGAGATCTGGTGAATTGAATTCTC 58.953 38.462 17.76 14.08 43.91 2.87
1628 1655 3.465742 TCTCTGCTTGGATGCTATGTC 57.534 47.619 0.00 0.00 0.00 3.06
1643 1670 5.121105 TGCTATGTCTGGTGAATGATTCTG 58.879 41.667 6.73 0.00 0.00 3.02
1646 1673 6.201806 GCTATGTCTGGTGAATGATTCTGTAC 59.798 42.308 6.73 0.00 0.00 2.90
1660 1687 5.307976 TGATTCTGTACCATCCTAGGAATGG 59.692 44.000 26.33 26.33 41.10 3.16
1670 1714 4.993705 TCCTAGGAATGGTTCTGTTTGT 57.006 40.909 9.71 0.00 0.00 2.83
1689 1733 8.296799 TGTTTGTGTATCAGAAATTTGCAATC 57.703 30.769 0.00 0.00 29.84 2.67
1692 1736 6.314018 TGTGTATCAGAAATTTGCAATCGAC 58.686 36.000 0.00 0.00 0.00 4.20
1709 1753 6.481134 CAATCGACAATTACTGTGGAGATTG 58.519 40.000 0.00 10.30 44.78 2.67
1712 1756 4.201753 CGACAATTACTGTGGAGATTGCAG 60.202 45.833 0.00 0.00 38.84 4.41
1714 1758 5.316167 ACAATTACTGTGGAGATTGCAGAA 58.684 37.500 0.00 0.00 36.69 3.02
1721 1765 5.769662 ACTGTGGAGATTGCAGAATTTTGTA 59.230 36.000 0.00 0.00 34.60 2.41
1731 1775 6.825284 TGCAGAATTTTGTACATGTTTGTG 57.175 33.333 2.30 0.76 36.53 3.33
1736 1780 8.109391 CAGAATTTTGTACATGTTTGTGTGTTG 58.891 33.333 2.30 0.00 36.53 3.33
1753 1797 7.093354 TGTGTGTTGTTTAATTCTTTTGAGCA 58.907 30.769 0.00 0.00 0.00 4.26
1773 1817 3.181510 GCACCGGCTATTTTGTCTAACAG 60.182 47.826 0.00 0.00 36.96 3.16
1774 1818 4.000988 CACCGGCTATTTTGTCTAACAGT 58.999 43.478 0.00 0.00 0.00 3.55
1800 1844 7.744087 TGTTAACTGACAGAATGCATAACTT 57.256 32.000 10.08 0.00 42.53 2.66
1801 1845 8.840833 TGTTAACTGACAGAATGCATAACTTA 57.159 30.769 10.08 0.00 42.53 2.24
1802 1846 8.935844 TGTTAACTGACAGAATGCATAACTTAG 58.064 33.333 10.08 4.25 42.53 2.18
1803 1847 8.936864 GTTAACTGACAGAATGCATAACTTAGT 58.063 33.333 10.08 4.81 42.53 2.24
1804 1848 6.974932 ACTGACAGAATGCATAACTTAGTG 57.025 37.500 10.08 0.00 42.53 2.74
1805 1849 6.467677 ACTGACAGAATGCATAACTTAGTGT 58.532 36.000 10.08 0.00 42.53 3.55
1806 1850 6.936900 ACTGACAGAATGCATAACTTAGTGTT 59.063 34.615 10.08 0.00 42.53 3.32
1807 1851 8.094548 ACTGACAGAATGCATAACTTAGTGTTA 58.905 33.333 10.08 0.00 42.16 2.41
1808 1852 8.840833 TGACAGAATGCATAACTTAGTGTTAA 57.159 30.769 0.00 0.00 41.61 2.01
1809 1853 8.717821 TGACAGAATGCATAACTTAGTGTTAAC 58.282 33.333 0.00 0.00 41.61 2.01
1810 1854 8.848474 ACAGAATGCATAACTTAGTGTTAACT 57.152 30.769 0.00 0.00 41.61 2.24
1811 1855 8.721478 ACAGAATGCATAACTTAGTGTTAACTG 58.279 33.333 0.00 0.00 41.61 3.16
1812 1856 8.935844 CAGAATGCATAACTTAGTGTTAACTGA 58.064 33.333 0.00 0.00 43.45 3.41
1813 1857 8.936864 AGAATGCATAACTTAGTGTTAACTGAC 58.063 33.333 0.00 0.00 43.45 3.51
1814 1858 8.615878 AATGCATAACTTAGTGTTAACTGACA 57.384 30.769 0.00 0.00 43.45 3.58
1815 1859 7.652300 TGCATAACTTAGTGTTAACTGACAG 57.348 36.000 7.22 0.00 43.45 3.51
1816 1860 7.438564 TGCATAACTTAGTGTTAACTGACAGA 58.561 34.615 10.08 0.00 43.45 3.41
1817 1861 7.929245 TGCATAACTTAGTGTTAACTGACAGAA 59.071 33.333 10.08 0.00 43.45 3.02
1818 1862 8.936864 GCATAACTTAGTGTTAACTGACAGAAT 58.063 33.333 10.08 0.00 43.45 2.40
1820 1864 6.787085 ACTTAGTGTTAACTGACAGAATGC 57.213 37.500 10.08 0.00 36.99 3.56
1821 1865 6.288294 ACTTAGTGTTAACTGACAGAATGCA 58.712 36.000 10.08 0.00 36.99 3.96
1822 1866 6.936900 ACTTAGTGTTAACTGACAGAATGCAT 59.063 34.615 10.08 0.00 36.99 3.96
1823 1867 8.094548 ACTTAGTGTTAACTGACAGAATGCATA 58.905 33.333 10.08 0.00 36.99 3.14
1824 1868 8.840833 TTAGTGTTAACTGACAGAATGCATAA 57.159 30.769 10.08 0.00 36.99 1.90
1834 1878 9.448438 ACTGACAGAATGCATAATTTAGTGTTA 57.552 29.630 10.08 0.00 42.53 2.41
1843 1887 8.840833 TGCATAATTTAGTGTTAACTGACAGA 57.159 30.769 10.08 0.00 37.19 3.41
1856 1900 8.791675 TGTTAACTGACAGAATGCATAATTTGA 58.208 29.630 10.08 0.00 42.53 2.69
1913 1979 5.126396 GCTACTTCTGCCAAAGTTTTGAT 57.874 39.130 6.18 0.00 40.01 2.57
1914 1980 5.532557 GCTACTTCTGCCAAAGTTTTGATT 58.467 37.500 6.18 0.00 40.01 2.57
1937 2003 1.822990 TCGGAAGGTGGATGTGAGTAC 59.177 52.381 0.00 0.00 0.00 2.73
1952 2018 0.818296 AGTACGAGCCACTCATCACC 59.182 55.000 0.00 0.00 0.00 4.02
1975 2041 5.449041 CCGCAGTTGCTATGATATTGTTTGT 60.449 40.000 2.29 0.00 39.32 2.83
1978 2044 7.465916 CGCAGTTGCTATGATATTGTTTGTAGT 60.466 37.037 2.29 0.00 39.32 2.73
1994 2060 8.208718 TGTTTGTAGTTATTGTGGCATAGATC 57.791 34.615 0.00 0.00 0.00 2.75
2002 2068 2.421725 TGTGGCATAGATCCCATCCTT 58.578 47.619 0.00 0.00 32.95 3.36
2007 2073 2.039480 GCATAGATCCCATCCTTGCTCA 59.961 50.000 0.00 0.00 35.79 4.26
2018 2084 1.071605 CCTTGCTCACGTAGTTCTGC 58.928 55.000 0.00 0.00 41.61 4.26
2025 2091 0.456312 CACGTAGTTCTGCGGGTCTC 60.456 60.000 13.86 0.00 41.61 3.36
2026 2092 1.226323 CGTAGTTCTGCGGGTCTCG 60.226 63.158 2.60 0.00 42.76 4.04
2046 2112 1.234821 GAGGACCGTCACAATTGCAA 58.765 50.000 5.05 0.00 0.00 4.08
2047 2113 1.606668 GAGGACCGTCACAATTGCAAA 59.393 47.619 1.71 0.00 0.00 3.68
2050 2116 2.223711 GGACCGTCACAATTGCAAAGTT 60.224 45.455 1.71 0.00 0.00 2.66
2067 2133 5.966335 CAAAGTTGCTGTTTACAATCTTGC 58.034 37.500 0.00 0.00 0.00 4.01
2132 2198 1.068127 GCTCCGTTACCGTATCCACAT 59.932 52.381 0.00 0.00 0.00 3.21
2141 2207 1.942657 CCGTATCCACATCAAGCCTTG 59.057 52.381 0.00 0.00 0.00 3.61
2143 2209 2.680805 CGTATCCACATCAAGCCTTGGT 60.681 50.000 4.30 0.00 0.00 3.67
2144 2210 2.134789 ATCCACATCAAGCCTTGGTC 57.865 50.000 4.30 0.00 0.00 4.02
2145 2211 0.038166 TCCACATCAAGCCTTGGTCC 59.962 55.000 4.30 0.00 0.00 4.46
2147 2213 0.251297 CACATCAAGCCTTGGTCCCA 60.251 55.000 4.30 0.00 0.00 4.37
2148 2214 0.706433 ACATCAAGCCTTGGTCCCAT 59.294 50.000 4.30 0.00 0.00 4.00
2149 2215 1.922447 ACATCAAGCCTTGGTCCCATA 59.078 47.619 4.30 0.00 0.00 2.74
2150 2216 2.301346 CATCAAGCCTTGGTCCCATAC 58.699 52.381 4.30 0.00 0.00 2.39
2151 2217 1.668826 TCAAGCCTTGGTCCCATACT 58.331 50.000 4.30 0.00 0.00 2.12
2190 2256 4.039973 CCACCTGACCAGTTTCAGTAGTAA 59.960 45.833 0.00 0.00 41.40 2.24
2216 2288 7.016153 TGACACTTGTAATTTCAGATAGGGT 57.984 36.000 0.00 0.00 0.00 4.34
2220 2292 9.396022 ACACTTGTAATTTCAGATAGGGTTATG 57.604 33.333 0.00 0.00 0.00 1.90
2246 2318 4.574013 CCAAGCCAATTGATCTACTCACTC 59.426 45.833 7.12 0.00 41.83 3.51
2265 2337 1.019673 CGATGGCAGACAGGATTTGG 58.980 55.000 0.00 0.00 0.00 3.28
2298 2370 0.957888 GAGCTTCTGGGTGCCTGAAC 60.958 60.000 0.00 0.00 36.73 3.18
2303 2375 1.673665 CTGGGTGCCTGAACAGCTC 60.674 63.158 0.00 0.00 38.14 4.09
2305 2377 2.343758 GGTGCCTGAACAGCTCGA 59.656 61.111 0.00 0.00 35.19 4.04
2324 2396 4.188462 TCGAGCATGACGGAATATTTGTT 58.812 39.130 0.00 0.00 0.00 2.83
2325 2397 4.634004 TCGAGCATGACGGAATATTTGTTT 59.366 37.500 0.00 0.00 0.00 2.83
2326 2398 5.123186 TCGAGCATGACGGAATATTTGTTTT 59.877 36.000 0.00 0.00 0.00 2.43
2327 2399 5.799936 CGAGCATGACGGAATATTTGTTTTT 59.200 36.000 0.00 0.00 0.00 1.94
2349 2421 3.865477 TGCGGGTGACGGAATATTT 57.135 47.368 0.00 0.00 41.04 1.40
2350 2422 1.374560 TGCGGGTGACGGAATATTTG 58.625 50.000 0.00 0.00 41.04 2.32
2351 2423 1.339247 TGCGGGTGACGGAATATTTGT 60.339 47.619 0.00 0.00 41.04 2.83
2352 2424 1.741145 GCGGGTGACGGAATATTTGTT 59.259 47.619 0.00 0.00 44.51 2.83
2353 2425 2.477189 GCGGGTGACGGAATATTTGTTG 60.477 50.000 0.00 0.00 44.51 3.33
2354 2426 3.004171 CGGGTGACGGAATATTTGTTGA 58.996 45.455 0.00 0.00 39.42 3.18
2355 2427 3.181514 CGGGTGACGGAATATTTGTTGAC 60.182 47.826 0.00 0.00 39.42 3.18
2356 2428 3.181514 GGGTGACGGAATATTTGTTGACG 60.182 47.826 0.00 0.00 0.00 4.35
2357 2429 3.434299 GGTGACGGAATATTTGTTGACGT 59.566 43.478 0.00 0.00 35.64 4.34
2358 2430 4.626604 GGTGACGGAATATTTGTTGACGTA 59.373 41.667 0.00 0.00 32.84 3.57
2359 2431 5.445010 GGTGACGGAATATTTGTTGACGTAC 60.445 44.000 0.00 0.00 32.84 3.67
2360 2432 5.118971 GTGACGGAATATTTGTTGACGTACA 59.881 40.000 0.00 0.00 32.84 2.90
2361 2433 5.118971 TGACGGAATATTTGTTGACGTACAC 59.881 40.000 0.00 0.00 32.84 2.90
2362 2434 4.989797 ACGGAATATTTGTTGACGTACACA 59.010 37.500 0.00 0.00 0.00 3.72
2363 2435 5.107375 ACGGAATATTTGTTGACGTACACAC 60.107 40.000 0.00 0.00 0.00 3.82
2364 2436 5.107414 CGGAATATTTGTTGACGTACACACA 60.107 40.000 0.00 0.00 0.00 3.72
2365 2437 6.564312 CGGAATATTTGTTGACGTACACACAA 60.564 38.462 0.00 0.00 32.37 3.33
2366 2438 7.302524 GGAATATTTGTTGACGTACACACAAT 58.697 34.615 0.00 5.83 33.38 2.71
2367 2439 7.480542 GGAATATTTGTTGACGTACACACAATC 59.519 37.037 0.00 0.00 33.38 2.67
2368 2440 3.845231 TTGTTGACGTACACACAATCG 57.155 42.857 0.00 0.00 30.75 3.34
2369 2441 3.081329 TGTTGACGTACACACAATCGA 57.919 42.857 0.00 0.00 0.00 3.59
2370 2442 3.644823 TGTTGACGTACACACAATCGAT 58.355 40.909 0.00 0.00 0.00 3.59
2371 2443 3.427193 TGTTGACGTACACACAATCGATG 59.573 43.478 0.00 0.00 0.00 3.84
2372 2444 1.989864 TGACGTACACACAATCGATGC 59.010 47.619 0.00 0.00 0.00 3.91
2373 2445 1.989864 GACGTACACACAATCGATGCA 59.010 47.619 0.00 0.00 0.00 3.96
2374 2446 2.603110 GACGTACACACAATCGATGCAT 59.397 45.455 0.00 0.00 0.00 3.96
2375 2447 2.603110 ACGTACACACAATCGATGCATC 59.397 45.455 17.10 17.10 0.00 3.91
2376 2448 2.033747 CGTACACACAATCGATGCATCC 60.034 50.000 20.87 3.71 0.00 3.51
2377 2449 2.408271 ACACACAATCGATGCATCCT 57.592 45.000 20.87 5.86 0.00 3.24
2378 2450 3.541996 ACACACAATCGATGCATCCTA 57.458 42.857 20.87 9.86 0.00 2.94
2379 2451 3.872696 ACACACAATCGATGCATCCTAA 58.127 40.909 20.87 7.29 0.00 2.69
2380 2452 4.260985 ACACACAATCGATGCATCCTAAA 58.739 39.130 20.87 4.76 0.00 1.85
2381 2453 4.883585 ACACACAATCGATGCATCCTAAAT 59.116 37.500 20.87 6.88 0.00 1.40
2382 2454 5.008019 ACACACAATCGATGCATCCTAAATC 59.992 40.000 20.87 0.00 0.00 2.17
2383 2455 4.212004 ACACAATCGATGCATCCTAAATCG 59.788 41.667 20.87 9.18 43.47 3.34
2384 2456 4.212004 CACAATCGATGCATCCTAAATCGT 59.788 41.667 20.87 6.52 42.83 3.73
2385 2457 4.449068 ACAATCGATGCATCCTAAATCGTC 59.551 41.667 20.87 0.00 42.83 4.20
2386 2458 4.527509 ATCGATGCATCCTAAATCGTCT 57.472 40.909 20.87 0.00 42.83 4.18
2387 2459 4.322080 TCGATGCATCCTAAATCGTCTT 57.678 40.909 20.87 0.00 42.83 3.01
2388 2460 4.299155 TCGATGCATCCTAAATCGTCTTC 58.701 43.478 20.87 0.00 42.83 2.87
2389 2461 3.430218 CGATGCATCCTAAATCGTCTTCC 59.570 47.826 20.87 0.00 38.65 3.46
2390 2462 4.636249 GATGCATCCTAAATCGTCTTCCT 58.364 43.478 16.23 0.00 0.00 3.36
2391 2463 5.564848 CGATGCATCCTAAATCGTCTTCCTA 60.565 44.000 20.87 0.00 38.65 2.94
2392 2464 4.945246 TGCATCCTAAATCGTCTTCCTAC 58.055 43.478 0.00 0.00 0.00 3.18
2393 2465 4.202223 TGCATCCTAAATCGTCTTCCTACC 60.202 45.833 0.00 0.00 0.00 3.18
2394 2466 4.799917 GCATCCTAAATCGTCTTCCTACCC 60.800 50.000 0.00 0.00 0.00 3.69
2395 2467 2.954318 TCCTAAATCGTCTTCCTACCCG 59.046 50.000 0.00 0.00 0.00 5.28
2396 2468 2.545322 CCTAAATCGTCTTCCTACCCGC 60.545 54.545 0.00 0.00 0.00 6.13
2397 2469 0.179119 AAATCGTCTTCCTACCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
2398 2470 2.624437 AATCGTCTTCCTACCCGCGC 62.624 60.000 0.00 0.00 0.00 6.86
2399 2471 4.867599 CGTCTTCCTACCCGCGCC 62.868 72.222 0.00 0.00 0.00 6.53
2400 2472 4.525949 GTCTTCCTACCCGCGCCC 62.526 72.222 0.00 0.00 0.00 6.13
2402 2474 4.090588 CTTCCTACCCGCGCCCAA 62.091 66.667 0.00 0.00 0.00 4.12
2403 2475 4.090588 TTCCTACCCGCGCCCAAG 62.091 66.667 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.158460 AGGGGCATTAGTTCATAAGGGC 60.158 50.000 0.00 0.00 46.63 5.19
2 3 3.884037 AGGGGCATTAGTTCATAAGGG 57.116 47.619 0.00 0.00 0.00 3.95
3 4 4.792068 TCAAGGGGCATTAGTTCATAAGG 58.208 43.478 0.00 0.00 0.00 2.69
4 5 5.067805 GGTTCAAGGGGCATTAGTTCATAAG 59.932 44.000 0.00 0.00 0.00 1.73
5 6 4.953579 GGTTCAAGGGGCATTAGTTCATAA 59.046 41.667 0.00 0.00 0.00 1.90
6 7 4.532834 GGTTCAAGGGGCATTAGTTCATA 58.467 43.478 0.00 0.00 0.00 2.15
7 8 3.365472 GGTTCAAGGGGCATTAGTTCAT 58.635 45.455 0.00 0.00 0.00 2.57
8 9 2.802719 GGTTCAAGGGGCATTAGTTCA 58.197 47.619 0.00 0.00 0.00 3.18
9 10 1.743394 CGGTTCAAGGGGCATTAGTTC 59.257 52.381 0.00 0.00 0.00 3.01
10 11 1.834188 CGGTTCAAGGGGCATTAGTT 58.166 50.000 0.00 0.00 0.00 2.24
11 12 0.679960 GCGGTTCAAGGGGCATTAGT 60.680 55.000 0.00 0.00 0.00 2.24
12 13 0.679640 TGCGGTTCAAGGGGCATTAG 60.680 55.000 0.00 0.00 0.00 1.73
13 14 0.251386 TTGCGGTTCAAGGGGCATTA 60.251 50.000 0.00 0.00 35.03 1.90
14 15 0.904394 ATTGCGGTTCAAGGGGCATT 60.904 50.000 0.00 0.00 38.22 3.56
15 16 0.904394 AATTGCGGTTCAAGGGGCAT 60.904 50.000 0.00 0.00 38.22 4.40
16 17 1.532794 AATTGCGGTTCAAGGGGCA 60.533 52.632 0.00 0.00 38.22 5.36
17 18 1.079888 CAATTGCGGTTCAAGGGGC 60.080 57.895 0.00 0.00 38.22 5.80
18 19 0.243636 GACAATTGCGGTTCAAGGGG 59.756 55.000 5.05 0.00 38.22 4.79
19 20 0.958091 TGACAATTGCGGTTCAAGGG 59.042 50.000 5.05 0.00 38.22 3.95
20 21 1.335872 GGTGACAATTGCGGTTCAAGG 60.336 52.381 5.05 0.00 38.22 3.61
21 22 1.662876 CGGTGACAATTGCGGTTCAAG 60.663 52.381 5.05 0.00 38.22 3.02
22 23 0.309302 CGGTGACAATTGCGGTTCAA 59.691 50.000 5.05 0.00 39.32 2.69
23 24 0.816018 ACGGTGACAATTGCGGTTCA 60.816 50.000 5.05 0.00 0.00 3.18
24 25 0.309612 AACGGTGACAATTGCGGTTC 59.690 50.000 5.05 0.00 0.00 3.62
25 26 0.030101 CAACGGTGACAATTGCGGTT 59.970 50.000 5.05 3.73 0.00 4.44
26 27 0.816018 TCAACGGTGACAATTGCGGT 60.816 50.000 0.00 0.00 0.00 5.68
27 28 0.309302 TTCAACGGTGACAATTGCGG 59.691 50.000 0.44 0.00 31.90 5.69
28 29 1.394697 GTTCAACGGTGACAATTGCG 58.605 50.000 0.44 3.40 31.90 4.85
29 30 1.601914 GGGTTCAACGGTGACAATTGC 60.602 52.381 0.44 0.00 31.90 3.56
30 31 1.953686 AGGGTTCAACGGTGACAATTG 59.046 47.619 0.44 3.24 31.90 2.32
31 32 2.358322 AGGGTTCAACGGTGACAATT 57.642 45.000 0.44 0.00 31.90 2.32
32 33 1.953686 CAAGGGTTCAACGGTGACAAT 59.046 47.619 0.44 0.00 31.90 2.71
33 34 1.384525 CAAGGGTTCAACGGTGACAA 58.615 50.000 0.44 0.00 31.90 3.18
34 35 1.098712 GCAAGGGTTCAACGGTGACA 61.099 55.000 0.44 0.00 31.90 3.58
35 36 1.098712 TGCAAGGGTTCAACGGTGAC 61.099 55.000 0.44 0.00 31.90 3.67
36 37 1.098712 GTGCAAGGGTTCAACGGTGA 61.099 55.000 0.00 0.00 0.00 4.02
37 38 1.358759 GTGCAAGGGTTCAACGGTG 59.641 57.895 0.00 0.00 0.00 4.94
38 39 0.467290 ATGTGCAAGGGTTCAACGGT 60.467 50.000 0.00 0.00 0.00 4.83
39 40 1.529226 TATGTGCAAGGGTTCAACGG 58.471 50.000 0.00 0.00 0.00 4.44
40 41 3.009723 AGATATGTGCAAGGGTTCAACG 58.990 45.455 0.00 0.00 0.00 4.10
81 82 1.266718 GCTTTCTCGTCATGTGGCAAA 59.733 47.619 0.00 0.00 0.00 3.68
84 85 0.674895 AGGCTTTCTCGTCATGTGGC 60.675 55.000 0.00 0.00 0.00 5.01
85 86 2.672961 TAGGCTTTCTCGTCATGTGG 57.327 50.000 0.00 0.00 0.00 4.17
90 91 3.056322 GGTAAGGTTAGGCTTTCTCGTCA 60.056 47.826 0.00 0.00 0.00 4.35
100 101 2.692041 TCTTAGAGCGGTAAGGTTAGGC 59.308 50.000 7.91 0.00 31.82 3.93
109 110 0.822164 GCCACCTTCTTAGAGCGGTA 59.178 55.000 5.24 0.00 0.00 4.02
113 114 0.905357 TCCTGCCACCTTCTTAGAGC 59.095 55.000 0.00 0.00 0.00 4.09
115 116 3.454858 AGATTCCTGCCACCTTCTTAGA 58.545 45.455 0.00 0.00 0.00 2.10
117 118 3.132289 CGTAGATTCCTGCCACCTTCTTA 59.868 47.826 0.00 0.00 0.00 2.10
121 122 0.107654 GCGTAGATTCCTGCCACCTT 60.108 55.000 0.00 0.00 0.00 3.50
143 144 2.358267 CTGGTTATAGTCGACGGAGCTT 59.642 50.000 10.46 0.00 0.00 3.74
157 158 3.021695 TCGAGTTCGTCCATCTGGTTAT 58.978 45.455 1.07 0.00 40.80 1.89
158 159 2.422479 CTCGAGTTCGTCCATCTGGTTA 59.578 50.000 3.62 0.00 40.80 2.85
161 162 1.095600 TCTCGAGTTCGTCCATCTGG 58.904 55.000 13.13 0.00 40.80 3.86
166 167 1.835494 ATCCTTCTCGAGTTCGTCCA 58.165 50.000 13.13 0.00 40.80 4.02
170 171 3.549221 GGCTCTAATCCTTCTCGAGTTCG 60.549 52.174 13.13 1.97 41.45 3.95
180 181 2.838202 TGTCTTTCGGGCTCTAATCCTT 59.162 45.455 0.00 0.00 0.00 3.36
186 187 2.631062 TGAGTTTGTCTTTCGGGCTCTA 59.369 45.455 0.00 0.00 0.00 2.43
191 192 4.574828 TCTTCTTTGAGTTTGTCTTTCGGG 59.425 41.667 0.00 0.00 0.00 5.14
193 194 6.195428 GCTTTCTTCTTTGAGTTTGTCTTTCG 59.805 38.462 0.00 0.00 0.00 3.46
195 196 6.924111 TGCTTTCTTCTTTGAGTTTGTCTTT 58.076 32.000 0.00 0.00 0.00 2.52
204 205 2.485426 TGGCGATGCTTTCTTCTTTGAG 59.515 45.455 0.00 0.00 0.00 3.02
232 233 4.228567 TCACTGGTGCGGCGTTCA 62.229 61.111 9.37 3.74 0.00 3.18
237 238 2.167398 TTAGTCCTCACTGGTGCGGC 62.167 60.000 5.01 0.00 35.52 6.53
263 264 9.740239 CCGCACTAATTAGTAGTTTACAATAGA 57.260 33.333 17.62 0.00 41.37 1.98
267 268 7.037438 CCTCCGCACTAATTAGTAGTTTACAA 58.963 38.462 17.62 0.00 41.37 2.41
268 269 6.567050 CCTCCGCACTAATTAGTAGTTTACA 58.433 40.000 17.62 0.00 41.37 2.41
274 275 3.728076 TGCCTCCGCACTAATTAGTAG 57.272 47.619 17.62 13.96 41.12 2.57
300 301 3.256960 TGGTGGCAGGGAGGGAAC 61.257 66.667 0.00 0.00 0.00 3.62
335 337 0.471617 ATTGATTCGCCTCCCCTCTG 59.528 55.000 0.00 0.00 0.00 3.35
339 341 1.529244 CCCATTGATTCGCCTCCCC 60.529 63.158 0.00 0.00 0.00 4.81
343 345 1.524621 CGAGCCCATTGATTCGCCT 60.525 57.895 0.00 0.00 0.00 5.52
347 349 0.749454 ACTGGCGAGCCCATTGATTC 60.749 55.000 12.05 0.00 44.33 2.52
352 354 0.962356 CTTTCACTGGCGAGCCCATT 60.962 55.000 12.05 0.00 44.33 3.16
373 375 1.450360 AAGGAAAACTCCCTGCTCCT 58.550 50.000 0.00 0.00 38.17 3.69
378 380 1.003233 ACGGCTAAGGAAAACTCCCTG 59.997 52.381 0.00 0.00 33.55 4.45
380 382 1.278413 AGACGGCTAAGGAAAACTCCC 59.722 52.381 0.00 0.00 0.00 4.30
381 383 2.764439 AGACGGCTAAGGAAAACTCC 57.236 50.000 0.00 0.00 0.00 3.85
391 393 2.381911 CTAACCACCCTAGACGGCTAA 58.618 52.381 0.00 0.00 0.00 3.09
394 396 1.683418 CCCTAACCACCCTAGACGGC 61.683 65.000 0.00 0.00 0.00 5.68
396 398 0.032813 TCCCCTAACCACCCTAGACG 60.033 60.000 0.00 0.00 0.00 4.18
398 400 1.702699 TCTCCCCTAACCACCCTAGA 58.297 55.000 0.00 0.00 0.00 2.43
438 440 9.515020 GTGTTTCAAATTTTGTCACTATGAGAA 57.485 29.630 8.89 0.00 0.00 2.87
440 442 8.961092 CAGTGTTTCAAATTTTGTCACTATGAG 58.039 33.333 22.59 14.23 36.90 2.90
441 443 8.465999 ACAGTGTTTCAAATTTTGTCACTATGA 58.534 29.630 22.59 0.27 36.90 2.15
442 444 8.633075 ACAGTGTTTCAAATTTTGTCACTATG 57.367 30.769 22.59 18.20 36.90 2.23
443 445 9.086336 CAACAGTGTTTCAAATTTTGTCACTAT 57.914 29.630 22.59 16.03 36.90 2.12
444 446 8.085296 ACAACAGTGTTTCAAATTTTGTCACTA 58.915 29.630 22.59 1.95 36.90 2.74
445 447 6.928492 ACAACAGTGTTTCAAATTTTGTCACT 59.072 30.769 20.06 20.06 38.00 3.41
446 448 7.116061 ACAACAGTGTTTCAAATTTTGTCAC 57.884 32.000 5.57 17.71 32.58 3.67
447 449 8.994429 ATACAACAGTGTTTCAAATTTTGTCA 57.006 26.923 5.57 5.08 39.30 3.58
465 467 5.935789 GGTTTACAGCCAACTCTATACAACA 59.064 40.000 0.00 0.00 0.00 3.33
467 469 5.047164 TCGGTTTACAGCCAACTCTATACAA 60.047 40.000 0.00 0.00 0.00 2.41
473 475 2.158871 TGTTCGGTTTACAGCCAACTCT 60.159 45.455 0.00 0.00 0.00 3.24
477 479 4.643463 TCTTATGTTCGGTTTACAGCCAA 58.357 39.130 0.00 0.00 0.00 4.52
480 482 6.035758 CCTTACTCTTATGTTCGGTTTACAGC 59.964 42.308 0.00 0.00 0.00 4.40
644 651 8.944029 CGGGAGAATCTATACTCGTCTAAATTA 58.056 37.037 0.00 0.00 34.40 1.40
649 661 4.829968 CCGGGAGAATCTATACTCGTCTA 58.170 47.826 0.00 0.00 34.40 2.59
651 663 2.162008 GCCGGGAGAATCTATACTCGTC 59.838 54.545 2.18 0.00 34.40 4.20
653 665 2.160205 TGCCGGGAGAATCTATACTCG 58.840 52.381 2.18 0.00 34.40 4.18
657 669 5.305585 GTCAAATTGCCGGGAGAATCTATA 58.694 41.667 2.18 0.00 33.73 1.31
658 670 4.137543 GTCAAATTGCCGGGAGAATCTAT 58.862 43.478 2.18 0.00 33.73 1.98
679 691 1.407656 TTCTCGCCTGTTGAGTGGGT 61.408 55.000 0.00 0.00 34.99 4.51
728 740 0.598065 GAGATGTGTTTGTGTGGGGC 59.402 55.000 0.00 0.00 0.00 5.80
729 741 1.247567 GGAGATGTGTTTGTGTGGGG 58.752 55.000 0.00 0.00 0.00 4.96
733 745 1.134220 ACGGTGGAGATGTGTTTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
739 751 1.258445 GGGAGACGGTGGAGATGTGT 61.258 60.000 0.00 0.00 0.00 3.72
741 753 0.325671 ATGGGAGACGGTGGAGATGT 60.326 55.000 0.00 0.00 0.00 3.06
747 759 2.590092 GGGAATGGGAGACGGTGG 59.410 66.667 0.00 0.00 0.00 4.61
757 769 4.189580 ATCGGGCGTGGGGAATGG 62.190 66.667 0.00 0.00 0.00 3.16
758 770 2.591715 GATCGGGCGTGGGGAATG 60.592 66.667 0.00 0.00 0.00 2.67
759 771 3.873812 GGATCGGGCGTGGGGAAT 61.874 66.667 0.00 0.00 0.00 3.01
771 783 2.892425 GGCTGAGCCGTTGGATCG 60.892 66.667 8.16 0.00 41.58 3.69
791 803 4.632458 GGGATCGAGGAGCGCGTC 62.632 72.222 8.43 3.87 40.61 5.19
794 806 2.028337 GAAGGGATCGAGGAGCGC 59.972 66.667 0.00 0.00 40.61 5.92
795 807 0.319383 CATGAAGGGATCGAGGAGCG 60.319 60.000 0.00 0.00 42.69 5.03
796 808 0.034616 CCATGAAGGGATCGAGGAGC 59.965 60.000 0.00 0.00 0.00 4.70
797 809 0.034616 GCCATGAAGGGATCGAGGAG 59.965 60.000 0.00 0.00 38.09 3.69
798 810 1.748329 CGCCATGAAGGGATCGAGGA 61.748 60.000 0.00 0.00 38.09 3.71
799 811 1.301244 CGCCATGAAGGGATCGAGG 60.301 63.158 0.00 0.00 38.09 4.63
801 813 2.108976 GCGCCATGAAGGGATCGA 59.891 61.111 0.00 0.00 38.09 3.59
803 815 0.825010 AATGGCGCCATGAAGGGATC 60.825 55.000 41.00 3.50 36.68 3.36
804 816 0.478072 TAATGGCGCCATGAAGGGAT 59.522 50.000 41.00 25.73 36.68 3.85
810 822 0.602638 GACGGATAATGGCGCCATGA 60.603 55.000 41.00 35.09 36.68 3.07
812 824 1.302511 GGACGGATAATGGCGCCAT 60.303 57.895 36.10 36.10 38.46 4.40
820 832 0.834612 TCGGGCTTTGGACGGATAAT 59.165 50.000 0.00 0.00 0.00 1.28
822 834 0.614294 TTTCGGGCTTTGGACGGATA 59.386 50.000 0.00 0.00 29.85 2.59
824 836 0.250989 AATTTCGGGCTTTGGACGGA 60.251 50.000 0.00 0.00 0.00 4.69
838 850 6.362686 GTTGAAAAATGGGAGCGAAAATTTC 58.637 36.000 0.00 0.00 0.00 2.17
873 887 1.698874 AGGGATGGGAATTTGGAGGT 58.301 50.000 0.00 0.00 0.00 3.85
888 902 3.845860 CAGGTAGATGGCTAAGTAGGGA 58.154 50.000 0.00 0.00 0.00 4.20
898 916 2.897350 GCGGTGCAGGTAGATGGC 60.897 66.667 0.00 0.00 0.00 4.40
908 926 0.249955 TTCTGATGATCTGCGGTGCA 59.750 50.000 0.00 0.00 36.92 4.57
909 927 0.654683 GTTCTGATGATCTGCGGTGC 59.345 55.000 0.00 0.00 0.00 5.01
911 930 0.179000 GGGTTCTGATGATCTGCGGT 59.821 55.000 0.00 0.00 0.00 5.68
914 933 2.012673 GTGTGGGTTCTGATGATCTGC 58.987 52.381 0.00 0.00 0.00 4.26
917 936 1.656652 CGGTGTGGGTTCTGATGATC 58.343 55.000 0.00 0.00 0.00 2.92
933 952 3.782443 GGAGATTGGGACGGCGGT 61.782 66.667 13.24 0.00 0.00 5.68
940 959 1.753903 TTCTTGGTGGGAGATTGGGA 58.246 50.000 0.00 0.00 0.00 4.37
953 980 1.515521 GGAGTGCGGTGGTTTCTTGG 61.516 60.000 0.00 0.00 0.00 3.61
954 981 1.515521 GGGAGTGCGGTGGTTTCTTG 61.516 60.000 0.00 0.00 0.00 3.02
988 1015 4.247380 GGCCATCGGAGCTGGAGG 62.247 72.222 0.00 0.00 35.70 4.30
1053 1080 2.203337 TTGGTCGCCAGCTGCTTT 60.203 55.556 8.66 0.00 38.05 3.51
1430 1457 0.251787 AACCAAGAAGGGACCATGGC 60.252 55.000 13.04 4.47 43.89 4.40
1438 1465 2.356535 CCTCAGGATCAACCAAGAAGGG 60.357 54.545 0.00 0.00 43.89 3.95
1443 1470 1.289160 TCCCCTCAGGATCAACCAAG 58.711 55.000 0.00 0.00 40.93 3.61
1455 1482 3.371166 GGTGGACGAAATAAATCCCCTCA 60.371 47.826 0.00 0.00 0.00 3.86
1471 1498 2.430921 CTCGACGCACAGGTGGAC 60.431 66.667 1.10 0.00 0.00 4.02
1479 1506 1.494824 ACCTAAACAACTCGACGCAC 58.505 50.000 0.00 0.00 0.00 5.34
1483 1510 6.907741 ACTAGTAGAACCTAAACAACTCGAC 58.092 40.000 3.59 0.00 0.00 4.20
1491 1518 9.828852 CATATCATCGACTAGTAGAACCTAAAC 57.171 37.037 9.88 0.00 0.00 2.01
1492 1519 9.011095 CCATATCATCGACTAGTAGAACCTAAA 57.989 37.037 9.88 0.00 0.00 1.85
1494 1521 7.687388 ACCATATCATCGACTAGTAGAACCTA 58.313 38.462 9.88 2.71 0.00 3.08
1495 1522 6.544650 ACCATATCATCGACTAGTAGAACCT 58.455 40.000 9.88 0.63 0.00 3.50
1496 1523 6.127952 GGACCATATCATCGACTAGTAGAACC 60.128 46.154 9.88 0.50 0.00 3.62
1497 1524 6.655848 AGGACCATATCATCGACTAGTAGAAC 59.344 42.308 9.88 0.00 0.00 3.01
1498 1525 6.655425 CAGGACCATATCATCGACTAGTAGAA 59.345 42.308 9.88 0.00 0.00 2.10
1499 1526 6.174049 CAGGACCATATCATCGACTAGTAGA 58.826 44.000 8.21 8.21 0.00 2.59
1500 1527 5.941058 ACAGGACCATATCATCGACTAGTAG 59.059 44.000 0.00 0.00 0.00 2.57
1502 1529 4.520874 CACAGGACCATATCATCGACTAGT 59.479 45.833 0.00 0.00 0.00 2.57
1503 1530 4.762251 TCACAGGACCATATCATCGACTAG 59.238 45.833 0.00 0.00 0.00 2.57
1518 1545 6.260936 CCAATAGGTAATCAACATCACAGGAC 59.739 42.308 0.00 0.00 0.00 3.85
1538 1565 5.424573 TCACATCCATTGCAATTTCCCAATA 59.575 36.000 9.83 0.00 30.96 1.90
1539 1566 4.225492 TCACATCCATTGCAATTTCCCAAT 59.775 37.500 9.83 0.00 32.20 3.16
1542 1569 3.891422 TCACATCCATTGCAATTTCCC 57.109 42.857 9.83 0.00 0.00 3.97
1544 1571 5.870433 TCACATTCACATCCATTGCAATTTC 59.130 36.000 9.83 0.00 0.00 2.17
1582 1609 6.997239 TCAATTCACCAGATCTCTGAAATG 57.003 37.500 15.77 15.77 46.59 2.32
1583 1610 8.591114 AATTCAATTCACCAGATCTCTGAAAT 57.409 30.769 13.84 5.71 46.59 2.17
1588 1615 7.049133 CAGAGAATTCAATTCACCAGATCTCT 58.951 38.462 12.74 0.89 41.15 3.10
1596 1623 4.460382 TCCAAGCAGAGAATTCAATTCACC 59.540 41.667 12.74 3.95 41.71 4.02
1603 1630 3.361281 AGCATCCAAGCAGAGAATTCA 57.639 42.857 8.44 0.00 36.85 2.57
1604 1631 4.820716 ACATAGCATCCAAGCAGAGAATTC 59.179 41.667 0.00 0.00 36.85 2.17
1609 1636 3.132160 CAGACATAGCATCCAAGCAGAG 58.868 50.000 0.00 0.00 36.85 3.35
1611 1638 2.219458 CCAGACATAGCATCCAAGCAG 58.781 52.381 0.00 0.00 36.85 4.24
1646 1673 4.510167 AACAGAACCATTCCTAGGATGG 57.490 45.455 26.33 26.33 41.10 3.51
1660 1687 7.434897 TGCAAATTTCTGATACACAAACAGAAC 59.565 33.333 0.00 0.00 45.87 3.01
1670 1714 6.493449 TGTCGATTGCAAATTTCTGATACA 57.507 33.333 1.71 0.00 0.00 2.29
1689 1733 3.684305 TGCAATCTCCACAGTAATTGTCG 59.316 43.478 0.00 0.00 38.16 4.35
1692 1736 5.885230 TTCTGCAATCTCCACAGTAATTG 57.115 39.130 0.00 0.00 33.12 2.32
1709 1753 6.255453 ACACACAAACATGTACAAAATTCTGC 59.745 34.615 0.00 0.00 0.00 4.26
1712 1756 7.958674 ACAACACACAAACATGTACAAAATTC 58.041 30.769 0.00 0.00 0.00 2.17
1714 1758 7.897575 AACAACACACAAACATGTACAAAAT 57.102 28.000 0.00 0.00 0.00 1.82
1721 1765 8.770438 AAGAATTAAACAACACACAAACATGT 57.230 26.923 0.00 0.00 0.00 3.21
1731 1775 6.291585 CGGTGCTCAAAAGAATTAAACAACAC 60.292 38.462 0.00 0.00 0.00 3.32
1736 1780 3.673338 GCCGGTGCTCAAAAGAATTAAAC 59.327 43.478 1.90 0.00 33.53 2.01
1753 1797 4.020485 AGACTGTTAGACAAAATAGCCGGT 60.020 41.667 1.90 0.00 0.00 5.28
1798 1842 6.785488 TGCATTCTGTCAGTTAACACTAAG 57.215 37.500 8.61 0.51 0.00 2.18
1799 1843 8.840833 TTATGCATTCTGTCAGTTAACACTAA 57.159 30.769 3.54 0.00 0.00 2.24
1800 1844 9.448438 AATTATGCATTCTGTCAGTTAACACTA 57.552 29.630 3.54 0.00 0.00 2.74
1801 1845 7.928307 ATTATGCATTCTGTCAGTTAACACT 57.072 32.000 3.54 0.00 0.00 3.55
1802 1846 8.970691 AAATTATGCATTCTGTCAGTTAACAC 57.029 30.769 3.54 0.00 0.00 3.32
1806 1850 9.448438 ACACTAAATTATGCATTCTGTCAGTTA 57.552 29.630 3.54 0.00 0.00 2.24
1807 1851 8.340618 ACACTAAATTATGCATTCTGTCAGTT 57.659 30.769 3.54 0.00 0.00 3.16
1808 1852 7.928307 ACACTAAATTATGCATTCTGTCAGT 57.072 32.000 3.54 0.00 0.00 3.41
1817 1861 9.448438 TCTGTCAGTTAACACTAAATTATGCAT 57.552 29.630 8.61 3.79 0.00 3.96
1818 1862 8.840833 TCTGTCAGTTAACACTAAATTATGCA 57.159 30.769 8.61 0.00 0.00 3.96
1822 1866 9.278978 TGCATTCTGTCAGTTAACACTAAATTA 57.721 29.630 8.61 0.00 0.00 1.40
1823 1867 8.165239 TGCATTCTGTCAGTTAACACTAAATT 57.835 30.769 8.61 0.00 0.00 1.82
1824 1868 7.744087 TGCATTCTGTCAGTTAACACTAAAT 57.256 32.000 8.61 0.67 0.00 1.40
1828 1872 7.928307 ATTATGCATTCTGTCAGTTAACACT 57.072 32.000 3.54 0.00 0.00 3.55
1834 1878 7.833786 ACATCAAATTATGCATTCTGTCAGTT 58.166 30.769 3.54 0.00 0.00 3.16
1838 1882 7.700505 TCTGACATCAAATTATGCATTCTGTC 58.299 34.615 3.54 8.42 33.42 3.51
1872 1930 7.473041 AGTAGCCTCATAGGGATCATATCTA 57.527 40.000 0.00 0.00 35.37 1.98
1881 1947 2.320781 GCAGAAGTAGCCTCATAGGGA 58.679 52.381 0.00 0.00 35.37 4.20
1913 1979 1.905894 TCACATCCACCTTCCGATCAA 59.094 47.619 0.00 0.00 0.00 2.57
1914 1980 1.482182 CTCACATCCACCTTCCGATCA 59.518 52.381 0.00 0.00 0.00 2.92
1937 2003 2.887568 GCGGTGATGAGTGGCTCG 60.888 66.667 0.00 0.00 32.35 5.03
1985 2051 1.353694 AGCAAGGATGGGATCTATGCC 59.646 52.381 0.00 0.00 39.75 4.40
1986 2052 2.039480 TGAGCAAGGATGGGATCTATGC 59.961 50.000 0.00 0.00 39.44 3.14
1994 2060 0.537188 ACTACGTGAGCAAGGATGGG 59.463 55.000 0.00 0.00 0.00 4.00
2002 2068 1.080772 CCGCAGAACTACGTGAGCA 60.081 57.895 0.00 0.00 0.00 4.26
2007 2073 1.881602 GAGACCCGCAGAACTACGT 59.118 57.895 0.00 0.00 0.00 3.57
2026 2092 0.605319 TGCAATTGTGACGGTCCTCC 60.605 55.000 7.40 0.00 0.00 4.30
2046 2112 5.284079 CAGCAAGATTGTAAACAGCAACTT 58.716 37.500 0.00 0.00 0.00 2.66
2047 2113 4.261741 CCAGCAAGATTGTAAACAGCAACT 60.262 41.667 0.00 0.00 0.00 3.16
2050 2116 3.004629 CACCAGCAAGATTGTAAACAGCA 59.995 43.478 0.00 0.00 0.00 4.41
2052 2118 3.568538 GCACCAGCAAGATTGTAAACAG 58.431 45.455 0.00 0.00 41.58 3.16
2132 2198 1.668826 AGTATGGGACCAAGGCTTGA 58.331 50.000 28.18 8.46 0.00 3.02
2141 2207 0.181350 CAGGGCTGAAGTATGGGACC 59.819 60.000 0.00 0.00 0.00 4.46
2143 2209 1.965414 TTCAGGGCTGAAGTATGGGA 58.035 50.000 0.00 0.00 43.90 4.37
2151 2217 1.547675 GGTGGTGATTTCAGGGCTGAA 60.548 52.381 0.00 0.00 46.72 3.02
2190 2256 8.109634 ACCCTATCTGAAATTACAAGTGTCAAT 58.890 33.333 0.00 0.00 0.00 2.57
2216 2288 7.118723 AGTAGATCAATTGGCTTGGTTCATAA 58.881 34.615 5.42 0.00 35.43 1.90
2220 2292 4.943705 TGAGTAGATCAATTGGCTTGGTTC 59.056 41.667 5.42 0.00 34.02 3.62
2230 2302 4.100035 TGCCATCGAGTGAGTAGATCAATT 59.900 41.667 0.00 0.00 40.43 2.32
2246 2318 1.019673 CCAAATCCTGTCTGCCATCG 58.980 55.000 0.00 0.00 0.00 3.84
2288 2360 1.739562 CTCGAGCTGTTCAGGCACC 60.740 63.158 0.00 0.00 0.00 5.01
2298 2370 0.529337 ATTCCGTCATGCTCGAGCTG 60.529 55.000 35.27 28.28 42.66 4.24
2303 2375 4.536364 AACAAATATTCCGTCATGCTCG 57.464 40.909 0.00 0.00 0.00 5.03
2327 2399 1.893544 TATTCCGTCACCCGCAAAAA 58.106 45.000 0.00 0.00 34.38 1.94
2328 2400 2.116827 ATATTCCGTCACCCGCAAAA 57.883 45.000 0.00 0.00 34.38 2.44
2329 2401 2.116827 AATATTCCGTCACCCGCAAA 57.883 45.000 0.00 0.00 34.38 3.68
2330 2402 1.740585 CAAATATTCCGTCACCCGCAA 59.259 47.619 0.00 0.00 34.38 4.85
2331 2403 1.339247 ACAAATATTCCGTCACCCGCA 60.339 47.619 0.00 0.00 34.38 5.69
2332 2404 1.375551 ACAAATATTCCGTCACCCGC 58.624 50.000 0.00 0.00 34.38 6.13
2333 2405 3.004171 TCAACAAATATTCCGTCACCCG 58.996 45.455 0.00 0.00 0.00 5.28
2334 2406 3.181514 CGTCAACAAATATTCCGTCACCC 60.182 47.826 0.00 0.00 0.00 4.61
2335 2407 3.434299 ACGTCAACAAATATTCCGTCACC 59.566 43.478 0.00 0.00 0.00 4.02
2336 2408 4.657075 ACGTCAACAAATATTCCGTCAC 57.343 40.909 0.00 0.00 0.00 3.67
2337 2409 5.118971 GTGTACGTCAACAAATATTCCGTCA 59.881 40.000 0.00 0.00 0.00 4.35
2338 2410 5.118971 TGTGTACGTCAACAAATATTCCGTC 59.881 40.000 0.00 0.00 0.00 4.79
2339 2411 4.989797 TGTGTACGTCAACAAATATTCCGT 59.010 37.500 0.00 0.00 0.00 4.69
2340 2412 5.107414 TGTGTGTACGTCAACAAATATTCCG 60.107 40.000 4.92 0.00 0.00 4.30
2341 2413 6.230849 TGTGTGTACGTCAACAAATATTCC 57.769 37.500 4.92 0.00 0.00 3.01
2342 2414 7.213706 CGATTGTGTGTACGTCAACAAATATTC 59.786 37.037 4.92 0.00 0.00 1.75
2343 2415 7.012943 CGATTGTGTGTACGTCAACAAATATT 58.987 34.615 4.92 0.00 0.00 1.28
2344 2416 6.366604 TCGATTGTGTGTACGTCAACAAATAT 59.633 34.615 4.92 0.51 0.00 1.28
2345 2417 5.690857 TCGATTGTGTGTACGTCAACAAATA 59.309 36.000 4.92 0.00 0.00 1.40
2346 2418 4.508492 TCGATTGTGTGTACGTCAACAAAT 59.492 37.500 4.92 7.41 0.00 2.32
2347 2419 3.864003 TCGATTGTGTGTACGTCAACAAA 59.136 39.130 4.92 0.00 0.00 2.83
2348 2420 3.445857 TCGATTGTGTGTACGTCAACAA 58.554 40.909 4.92 6.32 0.00 2.83
2349 2421 3.081329 TCGATTGTGTGTACGTCAACA 57.919 42.857 0.00 0.00 0.00 3.33
2350 2422 3.720920 GCATCGATTGTGTGTACGTCAAC 60.721 47.826 0.00 0.00 0.00 3.18
2351 2423 2.410392 GCATCGATTGTGTGTACGTCAA 59.590 45.455 0.00 0.00 0.00 3.18
2352 2424 1.989864 GCATCGATTGTGTGTACGTCA 59.010 47.619 0.00 0.00 0.00 4.35
2353 2425 1.989864 TGCATCGATTGTGTGTACGTC 59.010 47.619 0.00 0.00 0.00 4.34
2354 2426 2.073117 TGCATCGATTGTGTGTACGT 57.927 45.000 0.00 0.00 0.00 3.57
2355 2427 2.033747 GGATGCATCGATTGTGTGTACG 60.034 50.000 20.15 0.00 0.00 3.67
2356 2428 3.198068 AGGATGCATCGATTGTGTGTAC 58.802 45.455 20.15 2.06 0.00 2.90
2357 2429 3.541996 AGGATGCATCGATTGTGTGTA 57.458 42.857 20.15 0.00 0.00 2.90
2358 2430 2.408271 AGGATGCATCGATTGTGTGT 57.592 45.000 20.15 0.00 0.00 3.72
2359 2431 4.880886 TTTAGGATGCATCGATTGTGTG 57.119 40.909 20.15 0.00 0.00 3.82
2360 2432 4.212004 CGATTTAGGATGCATCGATTGTGT 59.788 41.667 20.15 3.26 41.96 3.72
2361 2433 4.212004 ACGATTTAGGATGCATCGATTGTG 59.788 41.667 20.15 9.67 41.96 3.33
2362 2434 4.380531 ACGATTTAGGATGCATCGATTGT 58.619 39.130 20.15 16.19 41.96 2.71
2363 2435 4.687948 AGACGATTTAGGATGCATCGATTG 59.312 41.667 20.15 15.64 41.96 2.67
2364 2436 4.887748 AGACGATTTAGGATGCATCGATT 58.112 39.130 20.15 10.84 41.96 3.34
2365 2437 4.527509 AGACGATTTAGGATGCATCGAT 57.472 40.909 20.15 13.63 41.96 3.59
2366 2438 4.299155 GAAGACGATTTAGGATGCATCGA 58.701 43.478 20.15 8.18 41.96 3.59
2367 2439 3.430218 GGAAGACGATTTAGGATGCATCG 59.570 47.826 20.15 11.16 44.37 3.84
2368 2440 4.636249 AGGAAGACGATTTAGGATGCATC 58.364 43.478 18.81 18.81 0.00 3.91
2369 2441 4.696479 AGGAAGACGATTTAGGATGCAT 57.304 40.909 0.00 0.00 0.00 3.96
2370 2442 4.202223 GGTAGGAAGACGATTTAGGATGCA 60.202 45.833 0.00 0.00 0.00 3.96
2371 2443 4.308265 GGTAGGAAGACGATTTAGGATGC 58.692 47.826 0.00 0.00 0.00 3.91
2372 2444 4.558898 CGGGTAGGAAGACGATTTAGGATG 60.559 50.000 0.00 0.00 0.00 3.51
2373 2445 3.573110 CGGGTAGGAAGACGATTTAGGAT 59.427 47.826 0.00 0.00 0.00 3.24
2374 2446 2.954318 CGGGTAGGAAGACGATTTAGGA 59.046 50.000 0.00 0.00 0.00 2.94
2375 2447 2.545322 GCGGGTAGGAAGACGATTTAGG 60.545 54.545 0.00 0.00 0.00 2.69
2376 2448 2.740452 GCGGGTAGGAAGACGATTTAG 58.260 52.381 0.00 0.00 0.00 1.85
2377 2449 1.066002 CGCGGGTAGGAAGACGATTTA 59.934 52.381 0.00 0.00 0.00 1.40
2378 2450 0.179119 CGCGGGTAGGAAGACGATTT 60.179 55.000 0.00 0.00 0.00 2.17
2379 2451 1.436336 CGCGGGTAGGAAGACGATT 59.564 57.895 0.00 0.00 0.00 3.34
2380 2452 3.117372 CGCGGGTAGGAAGACGAT 58.883 61.111 0.00 0.00 0.00 3.73
2381 2453 3.818787 GCGCGGGTAGGAAGACGA 61.819 66.667 8.83 0.00 0.00 4.20
2382 2454 4.867599 GGCGCGGGTAGGAAGACG 62.868 72.222 8.83 0.00 0.00 4.18
2383 2455 4.525949 GGGCGCGGGTAGGAAGAC 62.526 72.222 8.83 0.00 0.00 3.01
2385 2457 4.090588 TTGGGCGCGGGTAGGAAG 62.091 66.667 8.83 0.00 0.00 3.46
2386 2458 4.090588 CTTGGGCGCGGGTAGGAA 62.091 66.667 8.83 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.