Multiple sequence alignment - TraesCS2A01G376000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G376000 chr2A 100.000 2618 0 0 1 2618 618268526 618265909 0.000000e+00 4835
1 TraesCS2A01G376000 chr2A 88.496 113 7 3 2505 2617 735860820 735860714 5.880000e-27 132
2 TraesCS2A01G376000 chr2A 87.719 114 8 1 2505 2618 699909686 699909579 7.610000e-26 128
3 TraesCS2A01G376000 chr2D 89.013 2594 109 63 1 2506 476347050 476344545 0.000000e+00 3049
4 TraesCS2A01G376000 chr2B 88.328 1842 63 53 756 2506 557228077 557226297 0.000000e+00 2071
5 TraesCS2A01G376000 chr2B 80.824 850 57 38 1 791 557228892 557228090 1.050000e-158 569
6 TraesCS2A01G376000 chr3A 88.696 230 19 5 1233 1462 59431059 59431281 9.230000e-70 274
7 TraesCS2A01G376000 chr6A 86.726 226 28 2 1176 1400 614381577 614381801 1.560000e-62 250
8 TraesCS2A01G376000 chr6A 89.381 113 6 1 2505 2617 20748507 20748401 1.260000e-28 137
9 TraesCS2A01G376000 chr6A 87.931 116 7 4 2502 2617 4854885 4854993 2.110000e-26 130
10 TraesCS2A01G376000 chr3D 86.638 232 24 5 1233 1463 47344783 47345008 1.560000e-62 250
11 TraesCS2A01G376000 chr6D 85.408 233 30 4 1168 1396 469205347 469205579 3.370000e-59 239
12 TraesCS2A01G376000 chr1A 90.265 113 5 2 2505 2617 14477626 14477732 2.720000e-30 143
13 TraesCS2A01G376000 chr6B 89.381 113 6 2 2505 2617 693130571 693130465 1.260000e-28 137
14 TraesCS2A01G376000 chr4D 88.496 113 7 3 2505 2617 422955558 422955452 5.880000e-27 132
15 TraesCS2A01G376000 chr4D 87.611 113 8 3 2505 2617 254662977 254662871 2.740000e-25 126
16 TraesCS2A01G376000 chr7A 87.719 114 8 1 2504 2617 198001443 198001550 7.610000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G376000 chr2A 618265909 618268526 2617 True 4835 4835 100.000 1 2618 1 chr2A.!!$R1 2617
1 TraesCS2A01G376000 chr2D 476344545 476347050 2505 True 3049 3049 89.013 1 2506 1 chr2D.!!$R1 2505
2 TraesCS2A01G376000 chr2B 557226297 557228892 2595 True 1320 2071 84.576 1 2506 2 chr2B.!!$R1 2505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 412 0.250038 CCTACAGTGCACAGTGCTGT 60.25 55.0 25.83 22.96 45.31 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2322 0.108186 CAGTTACCGCAGATGCCAGA 60.108 55.0 0.0 0.0 37.91 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 61 0.755686 GTAGCTGGGTCTCCATCAGG 59.244 60.000 0.00 0.00 43.11 3.86
58 63 2.373707 GCTGGGTCTCCATCAGGCT 61.374 63.158 0.00 0.00 43.11 4.58
75 80 0.890996 GCTATCGCCATTTCCAGGGG 60.891 60.000 0.00 0.00 40.19 4.79
78 83 2.006748 TCGCCATTTCCAGGGGAAT 58.993 52.632 0.00 0.00 44.03 3.01
80 85 1.142870 TCGCCATTTCCAGGGGAATAG 59.857 52.381 0.00 0.00 44.03 1.73
81 86 1.332195 GCCATTTCCAGGGGAATAGC 58.668 55.000 0.00 0.00 41.71 2.97
82 87 1.411501 GCCATTTCCAGGGGAATAGCA 60.412 52.381 5.05 0.00 41.71 3.49
83 88 2.757606 GCCATTTCCAGGGGAATAGCAT 60.758 50.000 5.05 0.00 41.71 3.79
84 89 3.160269 CCATTTCCAGGGGAATAGCATC 58.840 50.000 0.00 0.00 41.71 3.91
85 90 3.160269 CATTTCCAGGGGAATAGCATCC 58.840 50.000 0.00 0.00 41.71 3.51
86 91 1.905839 TTCCAGGGGAATAGCATCCA 58.094 50.000 5.69 0.00 41.55 3.41
87 92 2.138535 TCCAGGGGAATAGCATCCAT 57.861 50.000 5.69 0.00 41.55 3.41
163 169 3.881688 GAGCTAGGCATGACAAATGACAT 59.118 43.478 0.00 0.00 0.00 3.06
164 170 4.275810 AGCTAGGCATGACAAATGACATT 58.724 39.130 0.00 0.00 0.00 2.71
165 171 4.708421 AGCTAGGCATGACAAATGACATTT 59.292 37.500 7.62 7.62 0.00 2.32
166 172 5.039333 GCTAGGCATGACAAATGACATTTC 58.961 41.667 10.52 1.89 0.00 2.17
167 173 5.393352 GCTAGGCATGACAAATGACATTTCA 60.393 40.000 10.52 7.64 35.73 2.69
168 174 5.670792 AGGCATGACAAATGACATTTCAT 57.329 34.783 10.52 9.56 44.98 2.57
169 175 5.416083 AGGCATGACAAATGACATTTCATG 58.584 37.500 25.49 25.49 42.00 3.07
170 176 5.186215 AGGCATGACAAATGACATTTCATGA 59.814 36.000 30.09 12.63 42.00 3.07
171 177 6.046593 GGCATGACAAATGACATTTCATGAT 58.953 36.000 30.09 13.92 42.00 2.45
172 178 6.537301 GGCATGACAAATGACATTTCATGATT 59.463 34.615 30.09 7.20 42.00 2.57
173 179 7.065324 GGCATGACAAATGACATTTCATGATTT 59.935 33.333 30.09 6.93 42.00 2.17
174 180 8.114290 GCATGACAAATGACATTTCATGATTTC 58.886 33.333 30.09 17.32 42.00 2.17
175 181 9.145865 CATGACAAATGACATTTCATGATTTCA 57.854 29.630 25.57 14.11 42.00 2.69
176 182 8.751302 TGACAAATGACATTTCATGATTTCAG 57.249 30.769 10.52 0.00 42.00 3.02
177 183 7.329962 TGACAAATGACATTTCATGATTTCAGC 59.670 33.333 10.52 0.00 42.00 4.26
178 184 7.156000 ACAAATGACATTTCATGATTTCAGCA 58.844 30.769 10.52 0.00 42.00 4.41
195 201 0.815615 GCATTTCAGAGGGCCTACCG 60.816 60.000 5.73 0.00 46.96 4.02
219 225 1.563111 CCAATGGAATGCAATGCGAC 58.437 50.000 0.00 0.00 0.00 5.19
220 226 1.135053 CCAATGGAATGCAATGCGACA 60.135 47.619 0.00 0.00 0.00 4.35
221 227 1.921887 CAATGGAATGCAATGCGACAC 59.078 47.619 0.00 0.00 0.00 3.67
223 229 0.892814 TGGAATGCAATGCGACACCA 60.893 50.000 0.00 5.01 0.00 4.17
227 240 0.672889 ATGCAATGCGACACCACAAA 59.327 45.000 0.00 0.00 0.00 2.83
248 267 4.794248 AAAATTTGCAAACCTCGAAAGC 57.206 36.364 15.41 0.00 0.00 3.51
252 271 1.512926 TGCAAACCTCGAAAGCTCTC 58.487 50.000 0.00 0.00 0.00 3.20
275 294 7.286316 TCTCTCTATGCAGATCAATGTTACAGA 59.714 37.037 0.00 0.00 0.00 3.41
276 295 7.432059 TCTCTATGCAGATCAATGTTACAGAG 58.568 38.462 0.00 0.00 0.00 3.35
290 309 1.352083 ACAGAGGCTTGAGCAAGGTA 58.648 50.000 11.78 0.00 44.36 3.08
293 312 2.027745 CAGAGGCTTGAGCAAGGTAAGA 60.028 50.000 11.78 0.00 44.36 2.10
295 314 4.033709 AGAGGCTTGAGCAAGGTAAGATA 58.966 43.478 11.78 0.00 44.36 1.98
296 315 4.100808 AGAGGCTTGAGCAAGGTAAGATAG 59.899 45.833 11.78 0.00 44.36 2.08
372 402 1.754234 CCCCCAATGCCTACAGTGC 60.754 63.158 0.00 0.00 40.52 4.40
373 403 1.001020 CCCCAATGCCTACAGTGCA 60.001 57.895 0.00 0.00 40.52 4.57
374 404 1.315257 CCCCAATGCCTACAGTGCAC 61.315 60.000 9.40 9.40 42.38 4.57
375 405 0.608856 CCCAATGCCTACAGTGCACA 60.609 55.000 21.04 0.00 42.38 4.57
376 406 0.806868 CCAATGCCTACAGTGCACAG 59.193 55.000 21.04 14.44 42.38 3.66
377 407 1.527034 CAATGCCTACAGTGCACAGT 58.473 50.000 21.04 20.13 42.38 3.55
378 408 1.198408 CAATGCCTACAGTGCACAGTG 59.802 52.381 23.60 14.32 42.38 3.66
379 409 0.957395 ATGCCTACAGTGCACAGTGC 60.957 55.000 23.60 19.37 42.38 4.40
380 410 1.302033 GCCTACAGTGCACAGTGCT 60.302 57.895 25.83 8.64 45.31 4.40
381 411 1.572085 GCCTACAGTGCACAGTGCTG 61.572 60.000 25.83 18.62 45.31 4.41
382 412 0.250038 CCTACAGTGCACAGTGCTGT 60.250 55.000 25.83 22.96 45.31 4.40
419 449 1.975407 GCAGTGCTCCATGCCTGTT 60.975 57.895 8.18 0.00 40.05 3.16
449 479 1.217779 GCAGTGCTCCTGTCCTCTC 59.782 63.158 8.18 0.00 43.55 3.20
505 550 3.943671 TTCAGGTTTTCAGGGTCAGAA 57.056 42.857 0.00 0.00 0.00 3.02
580 625 3.306294 CCCCAAAAGCTGAAAACCTCATC 60.306 47.826 0.00 0.00 32.14 2.92
620 675 3.499918 CCTCATGTTCAAGTTGGACTCAC 59.500 47.826 15.37 0.47 0.00 3.51
621 676 4.384056 CTCATGTTCAAGTTGGACTCACT 58.616 43.478 15.37 0.00 0.00 3.41
622 677 4.380531 TCATGTTCAAGTTGGACTCACTC 58.619 43.478 15.37 0.00 0.00 3.51
623 678 3.904800 TGTTCAAGTTGGACTCACTCA 57.095 42.857 15.37 0.00 0.00 3.41
641 696 8.017373 ACTCACTCATAATTTTCGTCACAATTG 58.983 33.333 3.24 3.24 0.00 2.32
645 700 7.867403 ACTCATAATTTTCGTCACAATTGCTTT 59.133 29.630 5.05 0.00 0.00 3.51
652 707 9.649024 ATTTTCGTCACAATTGCTTTTAAATTG 57.351 25.926 5.05 7.21 46.06 2.32
666 721 9.932699 TGCTTTTAAATTGTTTTTCATCATGTG 57.067 25.926 0.00 0.00 0.00 3.21
686 758 6.572167 TGTGAATCAACTTCATATGTGCAA 57.428 33.333 1.90 0.00 45.36 4.08
701 773 4.362932 TGTGCAATTTCGACAAAGTCAA 57.637 36.364 0.00 0.00 32.09 3.18
702 774 4.738124 TGTGCAATTTCGACAAAGTCAAA 58.262 34.783 0.00 0.00 32.09 2.69
703 775 4.797868 TGTGCAATTTCGACAAAGTCAAAG 59.202 37.500 0.00 0.00 32.09 2.77
704 776 4.798387 GTGCAATTTCGACAAAGTCAAAGT 59.202 37.500 0.00 0.00 32.09 2.66
705 777 5.034152 TGCAATTTCGACAAAGTCAAAGTC 58.966 37.500 0.00 0.00 32.09 3.01
706 778 5.163663 TGCAATTTCGACAAAGTCAAAGTCT 60.164 36.000 0.00 0.00 32.09 3.24
730 802 4.937620 GTGTATTTTCCTCATGCAGAGTCA 59.062 41.667 10.86 0.00 43.12 3.41
732 804 6.094603 GTGTATTTTCCTCATGCAGAGTCAAT 59.905 38.462 10.86 8.53 43.12 2.57
749 824 6.314896 AGAGTCAATGTAAAGCAGCTTCATAC 59.685 38.462 8.48 8.99 0.00 2.39
767 844 5.868257 TCATACGTGCATTTTTCTGACATC 58.132 37.500 0.00 0.00 0.00 3.06
768 845 5.643348 TCATACGTGCATTTTTCTGACATCT 59.357 36.000 0.00 0.00 0.00 2.90
771 848 4.154195 ACGTGCATTTTTCTGACATCTACC 59.846 41.667 0.00 0.00 0.00 3.18
775 852 5.189180 GCATTTTTCTGACATCTACCCTCT 58.811 41.667 0.00 0.00 0.00 3.69
788 913 5.023533 TCTACCCTCTGAAATGTGTATGC 57.976 43.478 0.00 0.00 0.00 3.14
858 995 7.924103 ATACAAAGAAAATGAACGTGAAACC 57.076 32.000 0.00 0.00 0.00 3.27
859 996 5.961272 ACAAAGAAAATGAACGTGAAACCT 58.039 33.333 0.00 0.00 0.00 3.50
860 997 5.804979 ACAAAGAAAATGAACGTGAAACCTG 59.195 36.000 0.00 0.00 0.00 4.00
862 999 5.424121 AGAAAATGAACGTGAAACCTGAG 57.576 39.130 0.00 0.00 0.00 3.35
883 1020 4.361783 AGGCCCCTTTATAAATTTGCACT 58.638 39.130 0.00 0.04 0.00 4.40
888 1025 5.422012 CCCCTTTATAAATTTGCACTCCACT 59.578 40.000 0.00 0.00 0.00 4.00
1308 1445 4.320456 ACCGTGGAGTGGCTGCTG 62.320 66.667 0.00 0.00 0.00 4.41
1663 1814 0.660300 CTACGTGATCGCATGCGCTA 60.660 55.000 34.45 19.76 41.18 4.26
1664 1815 0.660300 TACGTGATCGCATGCGCTAG 60.660 55.000 34.45 23.24 41.18 3.42
1666 1817 1.953138 GTGATCGCATGCGCTAGCT 60.953 57.895 34.45 15.90 45.42 3.32
1667 1818 1.952635 TGATCGCATGCGCTAGCTG 60.953 57.895 34.45 7.74 45.42 4.24
1668 1819 1.662760 GATCGCATGCGCTAGCTGA 60.663 57.895 34.45 16.56 45.42 4.26
1671 1822 3.634072 GCATGCGCTAGCTGACCG 61.634 66.667 13.93 0.00 45.42 4.79
1673 1824 4.899239 ATGCGCTAGCTGACCGCC 62.899 66.667 19.78 7.23 46.50 6.13
1678 1834 4.514577 CTAGCTGACCGCCCGTGG 62.515 72.222 0.00 0.00 40.39 4.94
1692 1848 1.065418 CCCGTGGCTAATTCTTGGAGT 60.065 52.381 0.00 0.00 0.00 3.85
1695 1851 2.932614 CGTGGCTAATTCTTGGAGTCAG 59.067 50.000 0.00 0.00 0.00 3.51
1696 1852 2.680339 GTGGCTAATTCTTGGAGTCAGC 59.320 50.000 0.00 0.00 0.00 4.26
1697 1853 2.573462 TGGCTAATTCTTGGAGTCAGCT 59.427 45.455 0.00 0.00 0.00 4.24
1698 1854 2.941720 GGCTAATTCTTGGAGTCAGCTG 59.058 50.000 7.63 7.63 0.00 4.24
1699 1855 3.604582 GCTAATTCTTGGAGTCAGCTGT 58.395 45.455 14.67 0.00 0.00 4.40
1700 1856 4.006319 GCTAATTCTTGGAGTCAGCTGTT 58.994 43.478 14.67 3.13 0.00 3.16
1702 1858 4.363991 AATTCTTGGAGTCAGCTGTTCT 57.636 40.909 14.67 13.30 0.00 3.01
1703 1859 3.845781 TTCTTGGAGTCAGCTGTTCTT 57.154 42.857 14.67 0.00 0.00 2.52
1705 1861 2.435805 TCTTGGAGTCAGCTGTTCTTGT 59.564 45.455 14.67 0.00 0.00 3.16
1708 1864 1.265365 GGAGTCAGCTGTTCTTGTTGC 59.735 52.381 14.67 1.91 0.00 4.17
1792 1982 1.930503 CTTTTGCGTGGTTTTTGGTCC 59.069 47.619 0.00 0.00 0.00 4.46
1865 2055 3.261897 AGCAACTGTAGATACAAGCCTGT 59.738 43.478 0.00 0.00 39.75 4.00
1868 2058 5.817816 GCAACTGTAGATACAAGCCTGTTAT 59.182 40.000 0.00 0.00 36.96 1.89
1869 2059 6.238211 GCAACTGTAGATACAAGCCTGTTATG 60.238 42.308 0.00 0.00 36.96 1.90
1870 2060 5.360591 ACTGTAGATACAAGCCTGTTATGC 58.639 41.667 0.00 0.00 36.96 3.14
1871 2061 5.129485 ACTGTAGATACAAGCCTGTTATGCT 59.871 40.000 0.00 0.00 41.89 3.79
1885 2076 5.196341 TGTTATGCTAGATCTTACCACCG 57.804 43.478 0.00 0.00 0.00 4.94
1886 2077 2.821991 ATGCTAGATCTTACCACCGC 57.178 50.000 0.00 0.00 0.00 5.68
1887 2078 1.776662 TGCTAGATCTTACCACCGCT 58.223 50.000 0.00 0.00 0.00 5.52
1971 2173 0.037512 CACTCCCTGCTGTCTGTGAG 60.038 60.000 0.00 0.00 0.00 3.51
1972 2174 0.470833 ACTCCCTGCTGTCTGTGAGT 60.471 55.000 0.00 0.00 0.00 3.41
2087 2290 4.950479 CCGATGCAAAGGCTCTCT 57.050 55.556 0.00 0.00 41.91 3.10
2089 2292 2.540265 CCGATGCAAAGGCTCTCTAT 57.460 50.000 0.00 0.00 41.91 1.98
2090 2293 2.411904 CCGATGCAAAGGCTCTCTATC 58.588 52.381 0.00 0.00 41.91 2.08
2091 2294 2.036992 CCGATGCAAAGGCTCTCTATCT 59.963 50.000 0.00 0.00 41.91 1.98
2092 2295 3.256879 CCGATGCAAAGGCTCTCTATCTA 59.743 47.826 0.00 0.00 41.91 1.98
2093 2296 4.081752 CCGATGCAAAGGCTCTCTATCTAT 60.082 45.833 0.00 0.00 41.91 1.98
2094 2297 5.101628 CGATGCAAAGGCTCTCTATCTATC 58.898 45.833 0.00 0.00 41.91 2.08
2095 2298 5.105797 CGATGCAAAGGCTCTCTATCTATCT 60.106 44.000 0.00 0.00 41.91 1.98
2096 2299 5.465532 TGCAAAGGCTCTCTATCTATCTG 57.534 43.478 0.00 0.00 41.91 2.90
2097 2300 4.282957 TGCAAAGGCTCTCTATCTATCTGG 59.717 45.833 0.00 0.00 41.91 3.86
2098 2301 4.283212 GCAAAGGCTCTCTATCTATCTGGT 59.717 45.833 0.00 0.00 36.96 4.00
2099 2302 5.782047 CAAAGGCTCTCTATCTATCTGGTG 58.218 45.833 0.00 0.00 0.00 4.17
2107 2322 4.610333 TCTATCTATCTGGTGTGGTGTGT 58.390 43.478 0.00 0.00 0.00 3.72
2108 2323 3.895232 ATCTATCTGGTGTGGTGTGTC 57.105 47.619 0.00 0.00 0.00 3.67
2131 2346 1.550065 CATCTGCGGTAACTGTCGAG 58.450 55.000 0.00 0.00 0.00 4.04
2165 2380 2.597117 GATGACCCATTTGGCGCACG 62.597 60.000 10.83 0.00 37.83 5.34
2180 2395 1.080093 CACGGCCATCACACTACGT 60.080 57.895 2.24 0.00 34.61 3.57
2181 2396 0.171679 CACGGCCATCACACTACGTA 59.828 55.000 2.24 0.00 32.85 3.57
2182 2397 0.454600 ACGGCCATCACACTACGTAG 59.545 55.000 20.97 20.97 32.30 3.51
2184 2399 1.672363 CGGCCATCACACTACGTAGTA 59.328 52.381 26.95 13.25 45.11 1.82
2185 2400 2.540361 CGGCCATCACACTACGTAGTAC 60.540 54.545 26.95 10.77 45.11 2.73
2186 2401 2.686915 GGCCATCACACTACGTAGTACT 59.313 50.000 26.95 12.95 45.11 2.73
2187 2402 3.879295 GGCCATCACACTACGTAGTACTA 59.121 47.826 26.95 15.26 45.11 1.82
2188 2403 4.260948 GGCCATCACACTACGTAGTACTAC 60.261 50.000 26.95 21.06 45.11 2.73
2226 2445 2.790468 GCTTTGCTGCGAGACAATGATC 60.790 50.000 6.98 0.00 0.00 2.92
2242 2461 9.270640 AGACAATGATCTAGATTGATGTTTAGC 57.729 33.333 6.70 1.54 35.23 3.09
2365 2584 3.819188 GCCCTGATGAAAGGCTCG 58.181 61.111 0.00 0.00 43.62 5.03
2484 2723 2.983592 CTGCACCCCCAACGGTTC 60.984 66.667 0.00 0.00 32.17 3.62
2506 2745 0.305922 GTTGCCATGCTCGCAGATAC 59.694 55.000 0.00 0.00 37.57 2.24
2507 2746 0.178767 TTGCCATGCTCGCAGATACT 59.821 50.000 0.00 0.00 37.57 2.12
2508 2747 0.249615 TGCCATGCTCGCAGATACTC 60.250 55.000 0.00 0.00 33.89 2.59
2509 2748 0.948141 GCCATGCTCGCAGATACTCC 60.948 60.000 0.00 0.00 33.89 3.85
2510 2749 0.320247 CCATGCTCGCAGATACTCCC 60.320 60.000 0.00 0.00 33.89 4.30
2511 2750 0.678395 CATGCTCGCAGATACTCCCT 59.322 55.000 0.00 0.00 33.89 4.20
2512 2751 0.965439 ATGCTCGCAGATACTCCCTC 59.035 55.000 0.00 0.00 33.89 4.30
2513 2752 0.106469 TGCTCGCAGATACTCCCTCT 60.106 55.000 0.00 0.00 33.89 3.69
2514 2753 0.313672 GCTCGCAGATACTCCCTCTG 59.686 60.000 0.00 0.00 42.47 3.35
2515 2754 1.686355 CTCGCAGATACTCCCTCTGT 58.314 55.000 2.63 0.00 41.77 3.41
2516 2755 2.028130 CTCGCAGATACTCCCTCTGTT 58.972 52.381 2.63 0.00 41.77 3.16
2517 2756 2.428890 CTCGCAGATACTCCCTCTGTTT 59.571 50.000 2.63 0.00 41.77 2.83
2518 2757 2.427453 TCGCAGATACTCCCTCTGTTTC 59.573 50.000 2.63 0.00 41.77 2.78
2519 2758 2.166459 CGCAGATACTCCCTCTGTTTCA 59.834 50.000 2.63 0.00 41.77 2.69
2520 2759 3.368427 CGCAGATACTCCCTCTGTTTCAA 60.368 47.826 2.63 0.00 41.77 2.69
2521 2760 4.579869 GCAGATACTCCCTCTGTTTCAAA 58.420 43.478 2.63 0.00 41.77 2.69
2522 2761 5.189180 GCAGATACTCCCTCTGTTTCAAAT 58.811 41.667 2.63 0.00 41.77 2.32
2523 2762 5.649831 GCAGATACTCCCTCTGTTTCAAATT 59.350 40.000 2.63 0.00 41.77 1.82
2524 2763 6.823689 GCAGATACTCCCTCTGTTTCAAATTA 59.176 38.462 2.63 0.00 41.77 1.40
2525 2764 7.201652 GCAGATACTCCCTCTGTTTCAAATTAC 60.202 40.741 2.63 0.00 41.77 1.89
2526 2765 8.043710 CAGATACTCCCTCTGTTTCAAATTACT 58.956 37.037 0.00 0.00 36.26 2.24
2527 2766 8.261522 AGATACTCCCTCTGTTTCAAATTACTC 58.738 37.037 0.00 0.00 0.00 2.59
2528 2767 5.238583 ACTCCCTCTGTTTCAAATTACTCG 58.761 41.667 0.00 0.00 0.00 4.18
2529 2768 5.221661 ACTCCCTCTGTTTCAAATTACTCGT 60.222 40.000 0.00 0.00 0.00 4.18
2530 2769 5.235516 TCCCTCTGTTTCAAATTACTCGTC 58.764 41.667 0.00 0.00 0.00 4.20
2531 2770 4.091509 CCCTCTGTTTCAAATTACTCGTCG 59.908 45.833 0.00 0.00 0.00 5.12
2532 2771 4.684703 CCTCTGTTTCAAATTACTCGTCGT 59.315 41.667 0.00 0.00 0.00 4.34
2533 2772 5.860182 CCTCTGTTTCAAATTACTCGTCGTA 59.140 40.000 0.00 0.00 0.00 3.43
2534 2773 6.033619 CCTCTGTTTCAAATTACTCGTCGTAG 59.966 42.308 0.00 0.00 0.00 3.51
2535 2774 6.671190 TCTGTTTCAAATTACTCGTCGTAGA 58.329 36.000 0.00 0.00 0.00 2.59
2536 2775 7.140705 TCTGTTTCAAATTACTCGTCGTAGAA 58.859 34.615 0.00 0.00 39.69 2.10
2537 2776 7.648908 TCTGTTTCAAATTACTCGTCGTAGAAA 59.351 33.333 0.00 0.00 39.69 2.52
2538 2777 8.301730 TGTTTCAAATTACTCGTCGTAGAAAT 57.698 30.769 0.00 0.00 39.69 2.17
2539 2778 9.409312 TGTTTCAAATTACTCGTCGTAGAAATA 57.591 29.630 0.00 0.00 39.69 1.40
2540 2779 9.882856 GTTTCAAATTACTCGTCGTAGAAATAG 57.117 33.333 0.00 0.00 39.69 1.73
2541 2780 9.844790 TTTCAAATTACTCGTCGTAGAAATAGA 57.155 29.630 0.00 0.00 39.69 1.98
2543 2782 9.447040 TCAAATTACTCGTCGTAGAAATAGATG 57.553 33.333 0.00 0.00 39.69 2.90
2544 2783 9.234384 CAAATTACTCGTCGTAGAAATAGATGT 57.766 33.333 0.00 0.00 39.69 3.06
2548 2787 7.966246 ACTCGTCGTAGAAATAGATGTATCT 57.034 36.000 0.00 0.00 39.69 1.98
2550 2789 9.142515 ACTCGTCGTAGAAATAGATGTATCTAG 57.857 37.037 7.57 0.00 39.84 2.43
2551 2790 9.356433 CTCGTCGTAGAAATAGATGTATCTAGA 57.644 37.037 7.57 0.00 39.84 2.43
2552 2791 9.702494 TCGTCGTAGAAATAGATGTATCTAGAA 57.298 33.333 0.00 0.00 39.84 2.10
2589 2828 9.306777 TCTAGATACATCCATATCCATATCTGC 57.693 37.037 0.00 0.00 32.76 4.26
2590 2829 6.990798 AGATACATCCATATCCATATCTGCG 58.009 40.000 0.00 0.00 32.76 5.18
2591 2830 6.779539 AGATACATCCATATCCATATCTGCGA 59.220 38.462 0.00 0.00 32.76 5.10
2592 2831 5.016051 ACATCCATATCCATATCTGCGAC 57.984 43.478 0.00 0.00 0.00 5.19
2593 2832 4.467438 ACATCCATATCCATATCTGCGACA 59.533 41.667 0.00 0.00 0.00 4.35
2594 2833 5.046376 ACATCCATATCCATATCTGCGACAA 60.046 40.000 0.00 0.00 0.00 3.18
2595 2834 5.077134 TCCATATCCATATCTGCGACAAG 57.923 43.478 0.00 0.00 0.00 3.16
2596 2835 4.528206 TCCATATCCATATCTGCGACAAGT 59.472 41.667 0.00 0.00 0.00 3.16
2597 2836 5.714806 TCCATATCCATATCTGCGACAAGTA 59.285 40.000 0.00 0.00 0.00 2.24
2598 2837 6.210584 TCCATATCCATATCTGCGACAAGTAA 59.789 38.462 0.00 0.00 0.00 2.24
2599 2838 7.044181 CCATATCCATATCTGCGACAAGTAAT 58.956 38.462 0.00 0.00 0.00 1.89
2600 2839 7.550551 CCATATCCATATCTGCGACAAGTAATT 59.449 37.037 0.00 0.00 0.00 1.40
2601 2840 8.598924 CATATCCATATCTGCGACAAGTAATTC 58.401 37.037 0.00 0.00 0.00 2.17
2602 2841 4.982295 TCCATATCTGCGACAAGTAATTCG 59.018 41.667 0.00 0.00 38.31 3.34
2603 2842 4.150627 CCATATCTGCGACAAGTAATTCGG 59.849 45.833 0.00 0.00 35.73 4.30
2604 2843 3.520290 ATCTGCGACAAGTAATTCGGA 57.480 42.857 0.00 0.00 35.73 4.55
2605 2844 3.306917 TCTGCGACAAGTAATTCGGAA 57.693 42.857 0.00 0.00 35.02 4.30
2606 2845 2.991190 TCTGCGACAAGTAATTCGGAAC 59.009 45.455 0.00 0.00 35.02 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 63 1.217916 TTCCCCTGGAAATGGCGATA 58.782 50.000 0.00 0.00 38.93 2.92
111 117 1.743394 GTCCGTATGCAAAGAAAGGGG 59.257 52.381 0.00 0.00 0.00 4.79
112 118 1.396996 CGTCCGTATGCAAAGAAAGGG 59.603 52.381 0.00 0.00 0.00 3.95
163 169 6.350696 CCCTCTGAAATGCTGAAATCATGAAA 60.351 38.462 0.00 0.00 0.00 2.69
164 170 5.126545 CCCTCTGAAATGCTGAAATCATGAA 59.873 40.000 0.00 0.00 0.00 2.57
165 171 4.643334 CCCTCTGAAATGCTGAAATCATGA 59.357 41.667 0.00 0.00 0.00 3.07
166 172 4.736759 GCCCTCTGAAATGCTGAAATCATG 60.737 45.833 0.00 0.00 0.00 3.07
167 173 3.383825 GCCCTCTGAAATGCTGAAATCAT 59.616 43.478 0.00 0.00 0.00 2.45
168 174 2.756760 GCCCTCTGAAATGCTGAAATCA 59.243 45.455 0.00 0.00 0.00 2.57
169 175 2.100418 GGCCCTCTGAAATGCTGAAATC 59.900 50.000 0.00 0.00 0.00 2.17
170 176 2.105766 GGCCCTCTGAAATGCTGAAAT 58.894 47.619 0.00 0.00 0.00 2.17
171 177 1.076024 AGGCCCTCTGAAATGCTGAAA 59.924 47.619 0.00 0.00 0.00 2.69
172 178 0.700564 AGGCCCTCTGAAATGCTGAA 59.299 50.000 0.00 0.00 0.00 3.02
173 179 1.210478 GTAGGCCCTCTGAAATGCTGA 59.790 52.381 0.00 0.00 0.00 4.26
174 180 1.673168 GTAGGCCCTCTGAAATGCTG 58.327 55.000 0.00 0.00 0.00 4.41
175 181 0.548510 GGTAGGCCCTCTGAAATGCT 59.451 55.000 0.00 0.00 0.00 3.79
176 182 0.815615 CGGTAGGCCCTCTGAAATGC 60.816 60.000 0.00 0.00 0.00 3.56
177 183 0.179045 CCGGTAGGCCCTCTGAAATG 60.179 60.000 0.00 0.00 0.00 2.32
178 184 0.326238 TCCGGTAGGCCCTCTGAAAT 60.326 55.000 0.00 0.00 37.47 2.17
195 201 2.557317 CATTGCATTCCATTGGCTTCC 58.443 47.619 0.00 0.00 0.00 3.46
227 240 4.441792 AGCTTTCGAGGTTTGCAAATTTT 58.558 34.783 16.21 3.94 0.00 1.82
235 254 3.311486 AGAGAGAGCTTTCGAGGTTTG 57.689 47.619 0.00 0.00 0.00 2.93
248 267 7.432059 TGTAACATTGATCTGCATAGAGAGAG 58.568 38.462 0.00 0.00 36.14 3.20
252 271 6.645827 CCTCTGTAACATTGATCTGCATAGAG 59.354 42.308 0.00 0.00 36.14 2.43
275 294 4.033709 TCTATCTTACCTTGCTCAAGCCT 58.966 43.478 4.17 0.00 41.18 4.58
276 295 4.408182 TCTATCTTACCTTGCTCAAGCC 57.592 45.455 4.17 0.00 41.18 4.35
290 309 5.254901 ACGGACGGCTCTATTATCTATCTT 58.745 41.667 0.00 0.00 0.00 2.40
293 312 5.987098 TCTACGGACGGCTCTATTATCTAT 58.013 41.667 0.00 0.00 0.00 1.98
295 314 4.255301 CTCTACGGACGGCTCTATTATCT 58.745 47.826 0.00 0.00 0.00 1.98
296 315 3.374678 CCTCTACGGACGGCTCTATTATC 59.625 52.174 0.00 0.00 33.16 1.75
573 618 0.400213 TGCGGGTTTGAAGATGAGGT 59.600 50.000 0.00 0.00 0.00 3.85
611 666 6.147164 GTGACGAAAATTATGAGTGAGTCCAA 59.853 38.462 0.00 0.00 0.00 3.53
620 675 7.801547 AAGCAATTGTGACGAAAATTATGAG 57.198 32.000 7.40 0.00 0.00 2.90
621 676 8.586570 AAAAGCAATTGTGACGAAAATTATGA 57.413 26.923 7.40 0.00 0.00 2.15
666 721 7.697710 TCGAAATTGCACATATGAAGTTGATTC 59.302 33.333 10.38 5.02 38.50 2.52
667 722 7.485913 GTCGAAATTGCACATATGAAGTTGATT 59.514 33.333 10.38 0.00 0.00 2.57
669 724 6.072783 TGTCGAAATTGCACATATGAAGTTGA 60.073 34.615 10.38 0.00 0.00 3.18
680 752 4.362932 TTGACTTTGTCGAAATTGCACA 57.637 36.364 0.00 0.00 34.95 4.57
686 758 5.354234 ACACAGACTTTGACTTTGTCGAAAT 59.646 36.000 0.00 0.00 35.78 2.17
701 773 5.316167 TGCATGAGGAAAATACACAGACTT 58.684 37.500 0.00 0.00 0.00 3.01
702 774 4.910195 TGCATGAGGAAAATACACAGACT 58.090 39.130 0.00 0.00 0.00 3.24
703 775 4.937620 TCTGCATGAGGAAAATACACAGAC 59.062 41.667 0.00 0.00 0.00 3.51
704 776 5.164620 TCTGCATGAGGAAAATACACAGA 57.835 39.130 0.00 0.00 0.00 3.41
705 777 4.940046 ACTCTGCATGAGGAAAATACACAG 59.060 41.667 14.88 0.00 46.72 3.66
706 778 4.910195 ACTCTGCATGAGGAAAATACACA 58.090 39.130 14.88 0.00 46.72 3.72
730 802 4.437390 GCACGTATGAAGCTGCTTTACATT 60.437 41.667 17.10 0.11 0.00 2.71
732 804 2.415168 GCACGTATGAAGCTGCTTTACA 59.585 45.455 17.10 11.15 0.00 2.41
749 824 4.437390 GGGTAGATGTCAGAAAAATGCACG 60.437 45.833 0.00 0.00 0.00 5.34
767 844 4.130118 GGCATACACATTTCAGAGGGTAG 58.870 47.826 0.00 0.00 0.00 3.18
768 845 3.780294 AGGCATACACATTTCAGAGGGTA 59.220 43.478 0.00 0.00 0.00 3.69
771 848 4.460382 ACAAAGGCATACACATTTCAGAGG 59.540 41.667 0.00 0.00 0.00 3.69
775 852 3.894427 ACCACAAAGGCATACACATTTCA 59.106 39.130 0.00 0.00 43.14 2.69
788 913 4.151689 CGTCACAAGTATGTACCACAAAGG 59.848 45.833 0.00 0.00 40.01 3.11
848 985 1.228154 GGGCCTCAGGTTTCACGTT 60.228 57.895 0.84 0.00 0.00 3.99
851 988 0.178961 AAAGGGGCCTCAGGTTTCAC 60.179 55.000 4.79 0.00 0.00 3.18
858 995 4.405358 TGCAAATTTATAAAGGGGCCTCAG 59.595 41.667 4.79 0.00 0.00 3.35
859 996 4.161377 GTGCAAATTTATAAAGGGGCCTCA 59.839 41.667 4.79 0.00 0.00 3.86
860 997 4.405680 AGTGCAAATTTATAAAGGGGCCTC 59.594 41.667 0.84 0.00 0.00 4.70
862 999 4.442893 GGAGTGCAAATTTATAAAGGGGCC 60.443 45.833 3.94 0.00 0.00 5.80
883 1020 2.203938 GGTCCCTGACCCAGTGGA 60.204 66.667 11.95 0.00 46.19 4.02
975 1112 2.033141 TGCTGGTGGCTGAGCTTC 59.967 61.111 3.72 0.00 42.39 3.86
992 1129 1.370437 CGAGATGCCATGGCTAGCT 59.630 57.895 35.53 27.92 42.51 3.32
993 1130 2.323580 GCGAGATGCCATGGCTAGC 61.324 63.158 35.53 26.60 42.51 3.42
994 1131 2.025969 CGCGAGATGCCATGGCTAG 61.026 63.158 35.53 21.91 42.08 3.42
995 1132 2.029518 CGCGAGATGCCATGGCTA 59.970 61.111 35.53 22.71 42.08 3.93
1059 1196 2.436646 GTCTGGGACATGGGCGTG 60.437 66.667 0.00 0.00 38.20 5.34
1636 1786 1.719709 CGATCACGTAGACAGGCGA 59.280 57.895 0.00 0.00 34.56 5.54
1672 1823 1.065418 ACTCCAAGAATTAGCCACGGG 60.065 52.381 0.00 0.00 0.00 5.28
1673 1824 2.280628 GACTCCAAGAATTAGCCACGG 58.719 52.381 0.00 0.00 0.00 4.94
1674 1825 2.932614 CTGACTCCAAGAATTAGCCACG 59.067 50.000 0.00 0.00 0.00 4.94
1675 1826 2.680339 GCTGACTCCAAGAATTAGCCAC 59.320 50.000 0.00 0.00 0.00 5.01
1678 1834 3.604582 ACAGCTGACTCCAAGAATTAGC 58.395 45.455 23.35 0.00 0.00 3.09
1695 1851 1.534595 CCACACAGCAACAAGAACAGC 60.535 52.381 0.00 0.00 0.00 4.40
1696 1852 1.534595 GCCACACAGCAACAAGAACAG 60.535 52.381 0.00 0.00 0.00 3.16
1697 1853 0.455410 GCCACACAGCAACAAGAACA 59.545 50.000 0.00 0.00 0.00 3.18
1698 1854 0.740737 AGCCACACAGCAACAAGAAC 59.259 50.000 0.00 0.00 34.23 3.01
1699 1855 1.134753 CAAGCCACACAGCAACAAGAA 59.865 47.619 0.00 0.00 34.23 2.52
1700 1856 0.740149 CAAGCCACACAGCAACAAGA 59.260 50.000 0.00 0.00 34.23 3.02
1702 1858 1.141449 GCAAGCCACACAGCAACAA 59.859 52.632 0.00 0.00 34.23 2.83
1703 1859 2.784356 GGCAAGCCACACAGCAACA 61.784 57.895 6.14 0.00 35.81 3.33
1705 1861 2.350511 TAGGGCAAGCCACACAGCAA 62.351 55.000 13.87 0.00 37.98 3.91
1708 1864 2.034879 CGTAGGGCAAGCCACACAG 61.035 63.158 13.87 3.29 37.98 3.66
1792 1982 6.903883 TTCTCGATTAATTCTTTCTTCCCG 57.096 37.500 0.00 0.00 0.00 5.14
1865 2055 3.895656 AGCGGTGGTAAGATCTAGCATAA 59.104 43.478 0.00 0.00 0.00 1.90
1868 2058 1.681793 GAGCGGTGGTAAGATCTAGCA 59.318 52.381 0.00 0.00 0.00 3.49
1869 2059 1.000052 GGAGCGGTGGTAAGATCTAGC 60.000 57.143 0.00 0.00 0.00 3.42
1870 2060 2.307768 TGGAGCGGTGGTAAGATCTAG 58.692 52.381 0.00 0.00 0.00 2.43
1871 2061 2.447408 TGGAGCGGTGGTAAGATCTA 57.553 50.000 0.00 0.00 0.00 1.98
1885 2076 1.212616 CAAATCCGACGAGATGGAGC 58.787 55.000 0.00 0.00 37.76 4.70
1886 2077 2.159240 TCACAAATCCGACGAGATGGAG 60.159 50.000 0.00 0.00 37.76 3.86
1887 2078 1.822371 TCACAAATCCGACGAGATGGA 59.178 47.619 0.00 0.00 38.95 3.41
1971 2173 7.166638 CACTGTGTTAGATAGATCAATCGTCAC 59.833 40.741 0.00 0.00 0.00 3.67
1972 2174 7.196331 CACTGTGTTAGATAGATCAATCGTCA 58.804 38.462 0.00 0.00 0.00 4.35
2040 2243 4.733077 TTCCTACAGATAGAGGGAGAGG 57.267 50.000 0.00 0.00 33.27 3.69
2041 2244 4.941263 CGATTCCTACAGATAGAGGGAGAG 59.059 50.000 0.00 0.00 33.27 3.20
2042 2245 4.351407 ACGATTCCTACAGATAGAGGGAGA 59.649 45.833 0.00 0.00 33.27 3.71
2043 2246 4.658063 ACGATTCCTACAGATAGAGGGAG 58.342 47.826 0.00 0.00 33.27 4.30
2085 2288 4.610333 ACACACCACACCAGATAGATAGA 58.390 43.478 0.00 0.00 0.00 1.98
2086 2289 4.646945 AGACACACCACACCAGATAGATAG 59.353 45.833 0.00 0.00 0.00 2.08
2087 2290 4.402474 CAGACACACCACACCAGATAGATA 59.598 45.833 0.00 0.00 0.00 1.98
2088 2291 3.196469 CAGACACACCACACCAGATAGAT 59.804 47.826 0.00 0.00 0.00 1.98
2089 2292 2.562738 CAGACACACCACACCAGATAGA 59.437 50.000 0.00 0.00 0.00 1.98
2090 2293 2.354103 CCAGACACACCACACCAGATAG 60.354 54.545 0.00 0.00 0.00 2.08
2091 2294 1.623311 CCAGACACACCACACCAGATA 59.377 52.381 0.00 0.00 0.00 1.98
2092 2295 0.397941 CCAGACACACCACACCAGAT 59.602 55.000 0.00 0.00 0.00 2.90
2093 2296 1.829456 CCAGACACACCACACCAGA 59.171 57.895 0.00 0.00 0.00 3.86
2094 2297 1.893808 GCCAGACACACCACACCAG 60.894 63.158 0.00 0.00 0.00 4.00
2095 2298 1.993701 ATGCCAGACACACCACACCA 61.994 55.000 0.00 0.00 0.00 4.17
2096 2299 1.228245 ATGCCAGACACACCACACC 60.228 57.895 0.00 0.00 0.00 4.16
2097 2300 0.250467 AGATGCCAGACACACCACAC 60.250 55.000 0.00 0.00 0.00 3.82
2098 2301 0.250424 CAGATGCCAGACACACCACA 60.250 55.000 0.00 0.00 0.00 4.17
2099 2302 1.580845 GCAGATGCCAGACACACCAC 61.581 60.000 0.00 0.00 34.31 4.16
2107 2322 0.108186 CAGTTACCGCAGATGCCAGA 60.108 55.000 0.00 0.00 37.91 3.86
2108 2323 0.391661 ACAGTTACCGCAGATGCCAG 60.392 55.000 0.00 0.00 37.91 4.85
2131 2346 2.289002 GGTCATCTCGTTCCATCATTGC 59.711 50.000 0.00 0.00 0.00 3.56
2165 2380 2.686915 AGTACTACGTAGTGTGATGGCC 59.313 50.000 33.23 13.17 45.73 5.36
2180 2395 3.117246 AGCCCTGCCATGTAGTAGTACTA 60.117 47.826 5.90 5.90 0.00 1.82
2181 2396 2.040178 GCCCTGCCATGTAGTAGTACT 58.960 52.381 8.14 8.14 0.00 2.73
2182 2397 2.040178 AGCCCTGCCATGTAGTAGTAC 58.960 52.381 0.37 0.37 0.00 2.73
2183 2398 2.039418 CAGCCCTGCCATGTAGTAGTA 58.961 52.381 0.00 0.00 0.00 1.82
2184 2399 0.833287 CAGCCCTGCCATGTAGTAGT 59.167 55.000 0.00 0.00 0.00 2.73
2185 2400 3.694364 CAGCCCTGCCATGTAGTAG 57.306 57.895 0.00 0.00 0.00 2.57
2242 2461 6.475207 CGAACCCACGATTAAAGTAAATCTG 58.525 40.000 0.00 0.00 34.34 2.90
2280 2499 1.525535 CCCCAGCAGCAGCAGTATC 60.526 63.158 3.17 0.00 45.49 2.24
2318 2537 3.558411 GCCGTTAGCAGAGCAGCG 61.558 66.667 0.00 0.00 42.97 5.18
2365 2584 3.062466 GGCCGGAGAAAACAGCCC 61.062 66.667 5.05 0.00 37.66 5.19
2506 2745 5.238583 ACGAGTAATTTGAAACAGAGGGAG 58.761 41.667 0.00 0.00 0.00 4.30
2507 2746 5.223449 ACGAGTAATTTGAAACAGAGGGA 57.777 39.130 0.00 0.00 0.00 4.20
2508 2747 4.091509 CGACGAGTAATTTGAAACAGAGGG 59.908 45.833 0.00 0.00 0.00 4.30
2509 2748 4.684703 ACGACGAGTAATTTGAAACAGAGG 59.315 41.667 0.00 0.00 0.00 3.69
2510 2749 5.824243 ACGACGAGTAATTTGAAACAGAG 57.176 39.130 0.00 0.00 0.00 3.35
2511 2750 6.671190 TCTACGACGAGTAATTTGAAACAGA 58.329 36.000 0.00 0.00 34.45 3.41
2512 2751 6.922980 TCTACGACGAGTAATTTGAAACAG 57.077 37.500 0.00 0.00 34.45 3.16
2513 2752 7.697352 TTTCTACGACGAGTAATTTGAAACA 57.303 32.000 0.00 0.00 34.45 2.83
2514 2753 9.882856 CTATTTCTACGACGAGTAATTTGAAAC 57.117 33.333 0.00 0.00 32.37 2.78
2515 2754 9.844790 TCTATTTCTACGACGAGTAATTTGAAA 57.155 29.630 0.00 0.00 33.36 2.69
2517 2756 9.447040 CATCTATTTCTACGACGAGTAATTTGA 57.553 33.333 0.00 4.02 34.45 2.69
2518 2757 9.234384 ACATCTATTTCTACGACGAGTAATTTG 57.766 33.333 0.00 3.31 34.45 2.32
2522 2761 9.486497 AGATACATCTATTTCTACGACGAGTAA 57.514 33.333 0.00 0.00 34.85 2.24
2524 2763 7.966246 AGATACATCTATTTCTACGACGAGT 57.034 36.000 0.00 0.00 34.85 4.18
2525 2764 9.356433 TCTAGATACATCTATTTCTACGACGAG 57.644 37.037 0.00 0.00 38.60 4.18
2526 2765 9.702494 TTCTAGATACATCTATTTCTACGACGA 57.298 33.333 0.00 0.00 38.60 4.20
2563 2802 9.306777 GCAGATATGGATATGGATGTATCTAGA 57.693 37.037 0.00 0.00 32.78 2.43
2564 2803 8.242739 CGCAGATATGGATATGGATGTATCTAG 58.757 40.741 0.00 0.00 32.78 2.43
2565 2804 7.944554 TCGCAGATATGGATATGGATGTATCTA 59.055 37.037 0.00 0.00 32.78 1.98
2566 2805 6.779539 TCGCAGATATGGATATGGATGTATCT 59.220 38.462 0.00 0.00 32.78 1.98
2567 2806 6.865726 GTCGCAGATATGGATATGGATGTATC 59.134 42.308 0.00 0.00 40.67 2.24
2568 2807 6.324770 TGTCGCAGATATGGATATGGATGTAT 59.675 38.462 0.00 0.00 40.67 2.29
2569 2808 5.656416 TGTCGCAGATATGGATATGGATGTA 59.344 40.000 0.00 0.00 40.67 2.29
2570 2809 4.467438 TGTCGCAGATATGGATATGGATGT 59.533 41.667 0.00 0.00 40.67 3.06
2571 2810 5.014808 TGTCGCAGATATGGATATGGATG 57.985 43.478 0.00 0.00 40.67 3.51
2572 2811 5.188555 ACTTGTCGCAGATATGGATATGGAT 59.811 40.000 0.00 0.00 40.67 3.41
2573 2812 4.528206 ACTTGTCGCAGATATGGATATGGA 59.472 41.667 0.00 0.00 40.67 3.41
2574 2813 4.825422 ACTTGTCGCAGATATGGATATGG 58.175 43.478 0.00 0.00 40.67 2.74
2575 2814 8.484641 AATTACTTGTCGCAGATATGGATATG 57.515 34.615 0.00 0.00 40.67 1.78
2576 2815 7.489435 CGAATTACTTGTCGCAGATATGGATAT 59.511 37.037 0.00 0.00 40.67 1.63
2577 2816 6.806739 CGAATTACTTGTCGCAGATATGGATA 59.193 38.462 0.00 0.00 40.67 2.59
2578 2817 5.635280 CGAATTACTTGTCGCAGATATGGAT 59.365 40.000 0.00 0.00 40.67 3.41
2579 2818 4.982295 CGAATTACTTGTCGCAGATATGGA 59.018 41.667 0.00 0.00 40.67 3.41
2580 2819 4.150627 CCGAATTACTTGTCGCAGATATGG 59.849 45.833 0.00 0.00 40.67 2.74
2581 2820 4.982295 TCCGAATTACTTGTCGCAGATATG 59.018 41.667 0.00 0.00 40.67 1.78
2582 2821 5.196341 TCCGAATTACTTGTCGCAGATAT 57.804 39.130 0.00 0.00 40.67 1.63
2583 2822 4.642445 TCCGAATTACTTGTCGCAGATA 57.358 40.909 0.00 0.00 40.67 1.98
2584 2823 3.520290 TCCGAATTACTTGTCGCAGAT 57.480 42.857 0.00 0.00 40.67 2.90
2585 2824 2.991190 GTTCCGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 35.93 4.26
2586 2825 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
2587 2826 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2588 2827 1.987770 TCGTTCCGAATTACTTGTCGC 59.012 47.619 0.00 0.00 35.93 5.19
2589 2828 3.060363 CCTTCGTTCCGAATTACTTGTCG 59.940 47.826 0.00 0.00 44.85 4.35
2590 2829 4.240096 TCCTTCGTTCCGAATTACTTGTC 58.760 43.478 0.00 0.00 44.85 3.18
2591 2830 4.261578 TCCTTCGTTCCGAATTACTTGT 57.738 40.909 0.00 0.00 44.85 3.16
2592 2831 4.689345 ACTTCCTTCGTTCCGAATTACTTG 59.311 41.667 0.00 0.00 44.85 3.16
2593 2832 4.891260 ACTTCCTTCGTTCCGAATTACTT 58.109 39.130 0.00 0.00 44.85 2.24
2594 2833 4.532314 ACTTCCTTCGTTCCGAATTACT 57.468 40.909 0.00 0.00 44.85 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.